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CpG interval report generated on 20/05/20 with pycoMeth 0.4.6
Interval details
| pvalue rank | chromosome | start | end | length | number of samples | number of CpGs | pvalue | adjusted pvalue |
|---|---|---|---|---|---|---|---|---|
| #141 | 19 | 7868132 | 7870134 | 2002 | 3 | 63 | 4.89887e-16 | 3.45527e-14 |
Methylation log-likelihood ratio by CpG position
Distribution of CpG methylation log-likelihood ratio by sample
Closest transcripts TSS
| distance to tss | transcript id | gene id | transcript name | chromosome | start | end | strand | feature type | transcript biotype |
|---|---|---|---|---|---|---|---|---|---|
| 427 | enst00000597156 | sg00000268120 | ac010336.3-201 | 19 | 7870561 | 7871296 | + | lnc_RNA | lncrna |
| 3463 | enst00000615988 | sg00000183248 | prr36-201 | 19 | 7869064 | 7873597 | - | mRNA | protein_coding |
| 4256 | enst00000618550 | sg00000183248 | prr36-202 | 19 | 7868719 | 7874390 | - | mRNA | protein_coding |
| -7547 | enst00000601766 | sg00000142459 | evi5l-206 | 19 | 7860585 | 7863567 | + | mRNA | protein_coding |
| -9939 | enst00000600802 | sg00000142459 | evi5l-205 | 19 | 7858193 | 7858506 | + | lnc_RNA | processed_transcript |
| 9986 | enst00000600506 | sg00000269153 | lypla2p2-201 | 19 | 7879445 | 7880120 | - | pseudogenic_transcript | processed_pseudogene |
| -16643 | enst00000601984 | sg00000142459 | evi5l-207 | 19 | 7851489 | 7859190 | + | lnc_RNA | retained_intron |
| 16962 | enst00000363030 | sg00000199900 | rna5sp463-201 | 19 | 7886977 | 7887096 | - | rRNA | rrna |
| 16962 | enst00000648813 | sg00000285674 | ac010336.7-201 | 19 | 7886977 | 7887096 | - | pseudogenic_transcript | rrna_pseudogene |
| -18111 | enst00000599036 | sg00000142459 | evi5l-204 | 19 | 7850021 | 7853616 | + | mRNA | protein_coding |
| 18371 | enst00000618098 | sg00000171017 | lrrc8e-206 | 19 | 7888505 | 7902021 | + | mRNA | protein_coding |
| 18376 | enst00000306708 | sg00000171017 | lrrc8e-201 | 19 | 7888510 | 7902016 | + | mRNA | protein_coding |
| 18406 | enst00000600345 | sg00000171017 | lrrc8e-205 | 19 | 7888540 | 7899130 | + | mRNA | protein_coding |
| 18417 | enst00000598224 | sg00000171017 | lrrc8e-203 | 19 | 7888551 | 7899084 | + | mRNA | protein_coding |
| -19222 | enst00000597440 | sg00000142459 | evi5l-203 | 19 | 7848910 | 7853006 | + | lnc_RNA | retained_intron |
| -21589 | enst00000538904 | sg00000142459 | evi5l-202 | 19 | 7846543 | 7863702 | + | mRNA | protein_coding |
| 23462 | enst00000593511 | sg00000171017 | lrrc8e-202 | 19 | 7893596 | 7898808 | + | mRNA | protein_coding |
| 25000 | enst00000599367 | sg00000171017 | lrrc8e-204 | 19 | 7895134 | 7898933 | + | mRNA | protein_coding |
| 33408 | enst00000539278 | sg00000214248 | ac010336.1-201 | 19 | 7898804 | 7903542 | - | lnc_RNA | lncrna |
| 33709 | enst00000397981 | sg00000076984 | map2k7-202 | 19 | 7903843 | 7914478 | + | mRNA | protein_coding |
| 33746 | enst00000468058 | sg00000076984 | map2k7-205 | 19 | 7903880 | 7912565 | + | lnc_RNA | retained_intron |
| 33751 | enst00000397983 | sg00000076984 | map2k7-203 | 19 | 7903885 | 7914459 | + | mRNA | protein_coding |
| 33757 | enst00000397979 | sg00000076984 | map2k7-201 | 19 | 7903891 | 7914478 | + | mRNA | protein_coding |
| 33773 | enst00000475022 | sg00000076984 | map2k7-206 | 19 | 7903907 | 7907066 | + | lnc_RNA | retained_intron |
| -37899 | enst00000270530 | sg00000142459 | evi5l-201 | 19 | 7830233 | 7864976 | + | mRNA | protein_coding |
| 39942 | enst00000494348 | sg00000076984 | map2k7-207 | 19 | 7910076 | 7911105 | + | lnc_RNA | retained_intron |
| 40080 | enst00000465324 | sg00000076984 | map2k7-204 | 19 | 7910214 | 7910735 | + | lnc_RNA | retained_intron |
| 40965 | enst00000498118 | sg00000076984 | map2k7-208 | 19 | 7911099 | 7911356 | + | lnc_RNA | retained_intron |
| 43384 | enst00000595655 | sg00000268149 | ac010336.4-201 | 19 | 7912648 | 7913518 | - | lnc_RNA | lncrna |
| 46011 | enst00000565886 | sg00000260001 | tgfbr3l-202 | 19 | 7916145 | 7919097 | + | mRNA | protein_coding |
| 46822 | enst00000564348 | sg00000260001 | tgfbr3l-201 | 19 | 7916956 | 7919093 | + | lnc_RNA | processed_transcript |
| 47494 | enst00000566166 | sg00000260001 | tgfbr3l-203 | 19 | 7917628 | 7919090 | + | lnc_RNA | retained_intron |
| 49023 | enst00000564226 | sg00000260500 | ac010336.2-201 | 19 | 7918652 | 7919157 | - | lnc_RNA | lncrna |
| 50204 | enst00000221573 | sg00000104976 | snapc2-201 | 19 | 7920338 | 7923250 | + | mRNA | protein_coding |
| 50253 | enst00000595637 | sg00000104976 | snapc2-204 | 19 | 7920387 | 7922657 | + | mRNA | protein_coding |
| 50703 | enst00000593598 | sg00000104976 | snapc2-202 | 19 | 7920837 | 7921746 | + | lnc_RNA | processed_transcript |
| 50879 | enst00000595035 | sg00000104976 | snapc2-203 | 19 | 7921013 | 7922193 | + | lnc_RNA | processed_transcript |
| 50881 | enst00000597584 | sg00000104976 | snapc2-206 | 19 | 7921015 | 7923250 | + | mRNA | protein_coding |
| 51184 | enst00000596520 | sg00000104976 | snapc2-205 | 19 | 7921318 | 7922197 | + | lnc_RNA | processed_transcript |
| -53707 | enst00000594464 | sg00000269763 | exosc3p2-201 | 19 | 7813615 | 7814425 | - | pseudogenic_transcript | processed_pseudogene |
| 55867 | enst00000594308 | sg00000269139 | ac010336.5-201 | 19 | 7926001 | 7926763 | + | lnc_RNA | lncrna |
| 56001 | enst00000318978 | sg00000178531 | ctxn1-201 | 19 | 7924491 | 7926135 | - | mRNA | protein_coding |
| 56089 | enst00000620586 | sg00000269139 | ac010336.5-202 | 19 | 7926223 | 7926810 | + | lnc_RNA | retained_intron |
| 58810 | enst00000599939 | sg00000104980 | timm44-210 | 19 | 7926718 | 7928944 | - | lnc_RNA | retained_intron |
| 61247 | enst00000598481 | sg00000104980 | timm44-206 | 19 | 7927824 | 7931381 | - | lnc_RNA | retained_intron |
| 61465 | enst00000599650 | sg00000104980 | timm44-209 | 19 | 7927049 | 7931599 | - | lnc_RNA | retained_intron |
| 61696 | enst00000598968 | sg00000104980 | timm44-208 | 19 | 7926914 | 7931830 | - | lnc_RNA | processed_transcript |
| 62612 | enst00000595565 | sg00000104980 | timm44-202 | 19 | 7926721 | 7932746 | - | mRNA | protein_coding |
| 63818 | enst00000598675 | sg00000104980 | timm44-207 | 19 | 7932276 | 7933952 | - | lnc_RNA | retained_intron |
| 73501 | enst00000595831 | sg00000104980 | timm44-203 | 19 | 7926736 | 7943635 | - | mRNA | nonsense_mediated_decay |
| 73502 | enst00000600748 | sg00000104980 | timm44-212 | 19 | 7933764 | 7943636 | - | lnc_RNA | retained_intron |
| 73517 | enst00000597926 | sg00000104980 | timm44-205 | 19 | 7932699 | 7943651 | - | mRNA | protein_coding |
| 73532 | enst00000270538 | sg00000104980 | timm44-201 | 19 | 7926718 | 7943666 | - | mRNA | protein_coding |
| 73532 | enst00000600000 | sg00000104980 | timm44-211 | 19 | 7937798 | 7943666 | - | lnc_RNA | retained_intron |
| 73533 | enst00000595876 | sg00000104980 | timm44-204 | 19 | 7928123 | 7943667 | - | mRNA | nonsense_mediated_decay |
| 74107 | enst00000652364 | sg00000286138 | ac010336.8-201 | 19 | 7944241 | 7945400 | + | lnc_RNA | lncrna |
| -80583 | enst00000596555 | sg00000268297 | clec4gp1-201 | 19 | 7787549 | 7790621 | + | pseudogenic_transcript | unprocessed_pseudogene |
| 88989 | enst00000595107 | sg00000269813 | ac010336.6-201 | 19 | 7959123 | 7960012 | + | lnc_RNA | lncrna |
| -101538 | enst00000602143 | sg00000104938 | clec4m-214 | 19 | 7766594 | 7769118 | + | lnc_RNA | retained_intron |
| 103651 | enst00000595499 | sg00000066044 | elavl1-203 | 19 | 7972888 | 7973785 | - | lnc_RNA | retained_intron |
| -104865 | enst00000595496 | sg00000104938 | clec4m-206 | 19 | 7763267 | 7768988 | + | mRNA | protein_coding |
| -104865 | enst00000599333 | sg00000104938 | clec4m-212 | 19 | 7763267 | 7768988 | + | lnc_RNA | retained_intron |
| -104865 | enst00000598879 | sg00000104938 | clec4m-211 | 19 | 7763267 | 7768988 | + | lnc_RNA | retained_intron |
| -104865 | enst00000597522 | sg00000104938 | clec4m-210 | 19 | 7763267 | 7768988 | + | mRNA | protein_coding |
| -104865 | enst00000596707 | sg00000104938 | clec4m-209 | 19 | 7763267 | 7768988 | + | mRNA | protein_coding |
| -104870 | enst00000601089 | sg00000104938 | clec4m-213 | 19 | 7763262 | 7768575 | + | lnc_RNA | retained_intron |
| -104888 | enst00000595751 | sg00000104938 | clec4m-207 | 19 | 7763244 | 7766802 | + | mRNA | protein_coding |
| -104889 | enst00000327325 | sg00000104938 | clec4m-202 | 19 | 7763243 | 7769605 | + | mRNA | protein_coding |
| -104915 | enst00000596363 | sg00000104938 | clec4m-208 | 19 | 7763217 | 7769604 | + | mRNA | protein_coding |
| -104983 | enst00000248228 | sg00000104938 | clec4m-201 | 19 | 7763149 | 7769604 | + | mRNA | protein_coding |
| -104983 | enst00000334806 | sg00000104938 | clec4m-203 | 19 | 7763149 | 7769604 | + | mRNA | protein_coding |
| -104983 | enst00000359059 | sg00000104938 | clec4m-204 | 19 | 7763149 | 7769604 | + | mRNA | protein_coding |
| -104983 | enst00000394122 | sg00000104938 | clec4m-205 | 19 | 7763149 | 7769604 | + | mRNA | protein_coding |
| 110978 | enst00000596154 | sg00000066044 | elavl1-204 | 19 | 7960917 | 7981112 | - | mRNA | protein_coding |
| -117448 | enst00000491732 | sg00000242636 | rpl21p129-201 | 19 | 7750684 | 7751161 | + | pseudogenic_transcript | processed_pseudogene |
| -120568 | enst00000394173 | sg00000090659 | cd209-206 | 19 | 7742511 | 7747564 | - | mRNA | protein_coding |
| -120598 | enst00000315599 | sg00000090659 | cd209-203 | 19 | 7739993 | 7747534 | - | mRNA | protein_coding |
| -120614 | enst00000601951 | sg00000090659 | cd209-210 | 19 | 7742850 | 7747518 | - | mRNA | protein_coding |
| -120621 | enst00000601256 | sg00000090659 | cd209-209 | 19 | 7743175 | 7747511 | - | mRNA | protein_coding |
| -120621 | enst00000602261 | sg00000090659 | cd209-211 | 19 | 7743039 | 7747511 | - | mRNA | protein_coding |
| -120621 | enst00000394161 | sg00000090659 | cd209-205 | 19 | 7743039 | 7747511 | - | mRNA | protein_coding |
| -120621 | enst00000354397 | sg00000090659 | cd209-204 | 19 | 7743039 | 7747511 | - | mRNA | protein_coding |
| -120621 | enst00000315591 | sg00000090659 | cd209-202 | 19 | 7743039 | 7747511 | - | mRNA | protein_coding |
| -120621 | enst00000204801 | sg00000090659 | cd209-201 | 19 | 7743039 | 7747511 | - | mRNA | protein_coding |
| -120621 | enst00000593660 | sg00000090659 | cd209-207 | 19 | 7742647 | 7747511 | - | mRNA | protein_coding |
| -120621 | enst00000593821 | sg00000090659 | cd209-208 | 19 | 7743039 | 7747511 | - | mRNA | protein_coding |
| 132069 | enst00000596459 | sg00000066044 | elavl1-205 | 19 | 7963159 | 8002203 | - | mRNA | protein_coding |
| -134226 | enst00000599020 | sg00000182566 | clec4g-203 | 19 | 7730821 | 7733906 | - | mRNA | protein_coding |
| 135507 | enst00000407627 | sg00000066044 | elavl1-201 | 19 | 7958573 | 8005641 | - | mRNA | protein_coding |
| 135525 | enst00000593807 | sg00000066044 | elavl1-202 | 19 | 7963630 | 8005659 | - | mRNA | protein_coding |
| -135927 | enst00000598081 | sg00000182566 | clec4g-202 | 19 | 7731039 | 7732205 | - | lnc_RNA | processed_transcript |
| -135961 | enst00000328853 | sg00000182566 | clec4g-201 | 19 | 7728957 | 7732171 | - | mRNA | protein_coding |
| 138595 | enst00000599756 | sg00000267939 | ac008946.1-201 | 19 | 8008729 | 8016025 | + | lnc_RNA | lncrna |
| -165986 | enst00000346664 | sg00000104921 | fcer2-201 | 19 | 7688776 | 7702146 | - | mRNA | protein_coding |
| -166001 | enst00000597921 | sg00000104921 | fcer2-205 | 19 | 7688776 | 7702131 | - | mRNA | protein_coding |
| -166001 | enst00000597934 | sg00000104921 | fcer2-206 | 19 | 7688944 | 7702131 | - | lnc_RNA | retained_intron |
| -166039 | enst00000598803 | sg00000104921 | fcer2-207 | 19 | 7688782 | 7702093 | - | lnc_RNA | retained_intron |
| -168048 | enst00000593418 | sg00000104921 | fcer2-203 | 19 | 7690487 | 7700084 | - | mRNA | protein_coding |
| -168049 | enst00000597312 | sg00000104921 | fcer2-204 | 19 | 7688774 | 7700083 | - | lnc_RNA | retained_intron |
| -168653 | enst00000360067 | sg00000104921 | fcer2-202 | 19 | 7688758 | 7699479 | - | mRNA | protein_coding |
| 182633 | enst00000253451 | sg00000131142 | ccl25-201 | 19 | 8052767 | 8062622 | + | mRNA | protein_coding |
| 182866 | enst00000390669 | sg00000131142 | ccl25-203 | 19 | 8053000 | 8062646 | + | mRNA | protein_coding |
| 182916 | enst00000315626 | sg00000131142 | ccl25-202 | 19 | 8053050 | 8057925 | + | mRNA | protein_coding |
| 182916 | enst00000458625 | sg00000131142 | ccl25-204 | 19 | 8053050 | 8062650 | + | mRNA | nonsense_mediated_decay |
| -185889 | enst00000595985 | sg00000181029 | trappc5-203 | 19 | 7682243 | 7682854 | + | mRNA | protein_coding |
| -187253 | enst00000426877 | sg00000181029 | trappc5-202 | 19 | 7680879 | 7682858 | + | mRNA | protein_coding |
| -187257 | enst00000317378 | sg00000181029 | trappc5-201 | 19 | 7680875 | 7682856 | + | mRNA | protein_coding |
| -187299 | enst00000596148 | sg00000181029 | trappc5-204 | 19 | 7680833 | 7687703 | + | mRNA | protein_coding |
| -189631 | enst00000597959 | sg00000269711 | ac008763.3-201 | 19 | 7678501 | 7682854 | + | mRNA | protein_coding |
| -190203 | enst00000598851 | sg00000183019 | mcemp1-203 | 19 | 7677929 | 7678984 | + | lnc_RNA | retained_intron |
| -191044 | enst00000597445 | sg00000183019 | mcemp1-202 | 19 | 7677088 | 7679409 | + | mRNA | protein_coding |
| -191504 | enst00000333598 | sg00000183019 | mcemp1-201 | 19 | 7676628 | 7679826 | + | mRNA | protein_coding |
| -198805 | enst00000381324 | sg00000104918 | retn-202 | 19 | 7669327 | 7670349 | + | mRNA | protein_coding |
| -199046 | enst00000629642 | sg00000104918 | retn-203 | 19 | 7669086 | 7670454 | + | mRNA | protein_coding |
| -199083 | enst00000221515 | sg00000104918 | retn-201 | 19 | 7669049 | 7670455 | + | mRNA | protein_coding |
| -202415 | enst00000597285 | sg00000269228 | rps27ap19-201 | 19 | 7665717 | 7666476 | + | pseudogenic_transcript | processed_pseudogene |
| 210922 | enst00000595036 | sg00000142449 | fbn3-203 | 19 | 8074766 | 8081056 | - | lnc_RNA | retained_intron |
| 219843 | enst00000598269 | sg00000142449 | fbn3-204 | 19 | 8087825 | 8089977 | - | lnc_RNA | retained_intron |
| 220099 | enst00000601281 | sg00000142449 | fbn3-206 | 19 | 8087204 | 8090233 | - | mRNA | protein_coding |
| -221077 | enst00000599278 | sg00000076944 | stxbp2-213 | 19 | 7647055 | 7647455 | + | lnc_RNA | retained_intron |
| -222173 | enst00000602355 | sg00000076944 | stxbp2-221 | 19 | 7645959 | 7647810 | + | mRNA | protein_coding |
| -222936 | enst00000601061 | sg00000076944 | stxbp2-220 | 19 | 7645196 | 7647873 | + | lnc_RNA | retained_intron |
| -223566 | enst00000599558 | sg00000076944 | stxbp2-215 | 19 | 7644566 | 7645394 | + | lnc_RNA | retained_intron |
| -223619 | enst00000595800 | sg00000076944 | stxbp2-208 | 19 | 7644513 | 7647872 | + | lnc_RNA | retained_intron |
| -223783 | enst00000593854 | sg00000076944 | stxbp2-205 | 19 | 7644349 | 7646438 | + | lnc_RNA | retained_intron |
| -224917 | enst00000599400 | sg00000076944 | stxbp2-214 | 19 | 7643215 | 7647838 | + | mRNA | nonsense_mediated_decay |
| -225351 | enst00000600702 | sg00000076944 | stxbp2-219 | 19 | 7642781 | 7647873 | + | mRNA | protein_coding |
| -225886 | enst00000595861 | sg00000076944 | stxbp2-209 | 19 | 7642246 | 7643274 | + | lnc_RNA | retained_intron |
| -226302 | enst00000594221 | sg00000076944 | stxbp2-206 | 19 | 7641830 | 7643210 | + | lnc_RNA | retained_intron |
| -227391 | enst00000599648 | sg00000076944 | stxbp2-216 | 19 | 7640741 | 7641913 | + | lnc_RNA | retained_intron |
| -228291 | enst00000612033 | sg00000076944 | stxbp2-222 | 19 | 7639841 | 7641201 | + | mRNA | protein_coding |
| -229395 | enst00000599737 | sg00000076944 | stxbp2-217 | 19 | 7638737 | 7647844 | + | mRNA | nonsense_mediated_decay |
| 230834 | enst00000602121 | sg00000142449 | fbn3-208 | 19 | 8095379 | 8100968 | - | mRNA | protein_coding |
| -231005 | enst00000414284 | sg00000076944 | stxbp2-202 | 19 | 7637127 | 7647873 | + | mRNA | protein_coding |
| -231010 | enst00000597068 | sg00000076944 | stxbp2-211 | 19 | 7637122 | 7647810 | + | mRNA | nonsense_mediated_decay |
| -231017 | enst00000599905 | sg00000076944 | stxbp2-218 | 19 | 7637115 | 7639485 | + | lnc_RNA | retained_intron |
| -231019 | enst00000595181 | sg00000076944 | stxbp2-207 | 19 | 7637113 | 7640156 | + | lnc_RNA | retained_intron |
| -231019 | enst00000441779 | sg00000076944 | stxbp2-203 | 19 | 7637113 | 7647872 | + | mRNA | protein_coding |
| -231022 | enst00000221283 | sg00000076944 | stxbp2-201 | 19 | 7637110 | 7647873 | + | mRNA | protein_coding |
| -231027 | enst00000595950 | sg00000076944 | stxbp2-210 | 19 | 7637105 | 7642118 | + | mRNA | protein_coding |
| -231027 | enst00000597467 | sg00000076944 | stxbp2-212 | 19 | 7637105 | 7639464 | + | lnc_RNA | retained_intron |
| -231142 | enst00000601797 | sg00000268204 | ac008763.1-201 | 19 | 7633766 | 7636990 | - | lnc_RNA | lncrna |
| -231251 | enst00000593535 | sg00000076944 | stxbp2-204 | 19 | 7636881 | 7641005 | + | mRNA | protein_coding |
| -234413 | enst00000311069 | sg00000174788 | pcp2-201 | 19 | 7631615 | 7633719 | - | mRNA | protein_coding |
| -235161 | enst00000598935 | sg00000174788 | pcp2-202 | 19 | 7631611 | 7632971 | - | mRNA | protein_coding |
| -237607 | enst00000600836 | sg00000229833 | pet100-204 | 19 | 7630525 | 7631624 | + | lnc_RNA | retained_intron |
| -238293 | enst00000598540 | sg00000229833 | pet100-203 | 19 | 7629839 | 7631624 | + | mRNA | nonsense_mediated_decay |
| -238296 | enst00000595866 | sg00000268400 | ac008763.2-203 | 19 | 7629836 | 7642118 | + | mRNA | nonsense_mediated_decay |
| -238308 | enst00000601829 | sg00000229833 | pet100-206 | 19 | 7629824 | 7630852 | + | lnc_RNA | retained_intron |
| -238308 | enst00000601406 | sg00000229833 | pet100-205 | 19 | 7629824 | 7631030 | + | mRNA | protein_coding |
| -238318 | enst00000456958 | sg00000229833 | pet100-201 | 19 | 7629814 | 7631620 | + | mRNA | protein_coding |
| -238320 | enst00000599243 | sg00000268400 | ac008763.2-202 | 19 | 7629812 | 7639807 | + | mRNA | nonsense_mediated_decay |
| -238323 | enst00000623154 | sg00000229833 | pet100-207 | 19 | 7629809 | 7631623 | + | unconfirmed_transcript | tec |
| -238336 | enst00000598664 | sg00000268400 | ac008763.2-201 | 19 | 7629796 | 7643048 | + | mRNA | nonsense_mediated_decay |
| -238339 | enst00000594797 | sg00000229833 | pet100-202 | 19 | 7629793 | 7631956 | + | mRNA | protein_coding |
| -238587 | enst00000358368 | sg00000076924 | xab2-201 | 19 | 7619525 | 7629545 | - | mRNA | protein_coding |
| -239862 | enst00000595288 | sg00000076924 | xab2-202 | 19 | 7619526 | 7628270 | - | lnc_RNA | retained_intron |
| 241672 | enst00000594331 | sg00000142449 | fbn3-202 | 19 | 8110888 | 8111806 | - | lnc_RNA | retained_intron |
| -246599 | enst00000596134 | sg00000076924 | xab2-203 | 19 | 7620893 | 7621533 | - | lnc_RNA | retained_intron |
| -246835 | enst00000600230 | sg00000076924 | xab2-204 | 19 | 7620275 | 7621297 | - | lnc_RNA | retained_intron |
| -250693 | enst00000614460 | sg00000273657 | mir6792-201 | 19 | 7617439 | 7617505 | + | miRNA | mirna |
| -251726 | enst00000593434 | sg00000076826 | camsap3-203 | 19 | 7616406 | 7617431 | + | lnc_RNA | retained_intron |
| -253498 | enst00000595692 | sg00000076826 | camsap3-204 | 19 | 7614634 | 7618095 | + | lnc_RNA | retained_intron |
| -272230 | enst00000160298 | sg00000076826 | camsap3-201 | 19 | 7595902 | 7618095 | + | mRNA | protein_coding |
| -272230 | enst00000446248 | sg00000076826 | camsap3-202 | 19 | 7595902 | 7618304 | + | mRNA | protein_coding |
| 277363 | enst00000651877 | sg00000142449 | fbn3-209 | 19 | 8065402 | 8147497 | - | mRNA | protein_coding |
| 277632 | enst00000270509 | sg00000142449 | fbn3-201 | 19 | 8065403 | 8147766 | - | mRNA | protein_coding |
| 278735 | enst00000601739 | sg00000142449 | fbn3-207 | 19 | 8065403 | 8148869 | - | mRNA | protein_coding |
| 279458 | enst00000600128 | sg00000142449 | fbn3-205 | 19 | 8065402 | 8149592 | - | mRNA | protein_coding |
| 303138 | enst00000595307 | sg00000269651 | ac022146.1-201 | 19 | 8173272 | 8175567 | + | pseudogenic_transcript | unprocessed_pseudogene |
| -307541 | enst00000597202 | sg00000032444 | pnpla6-215 | 19 | 7560591 | 7561764 | + | lnc_RNA | retained_intron |
| -309165 | enst00000599947 | sg00000032444 | pnpla6-218 | 19 | 7558967 | 7561764 | + | mRNA | protein_coding |
| -311618 | enst00000595352 | sg00000032444 | pnpla6-212 | 19 | 7556514 | 7557519 | + | lnc_RNA | retained_intron |
| -312871 | enst00000646984 | sg00000032444 | pnpla6-225 | 19 | 7555261 | 7558953 | + | mRNA | protein_coding |
| -317306 | enst00000599951 | sg00000032444 | pnpla6-219 | 19 | 7550826 | 7554243 | + | lnc_RNA | retained_intron |
| -318431 | enst00000594864 | sg00000032444 | pnpla6-209 | 19 | 7549701 | 7551030 | + | lnc_RNA | processed_transcript |
| -325624 | enst00000595889 | sg00000032444 | pnpla6-213 | 19 | 7542508 | 7550099 | + | lnc_RNA | retained_intron |
| -326684 | enst00000595176 | sg00000032444 | pnpla6-210 | 19 | 7541448 | 7550413 | + | lnc_RNA | retained_intron |
| -326737 | enst00000599311 | sg00000032444 | pnpla6-217 | 19 | 7541395 | 7550375 | + | lnc_RNA | retained_intron |
| -328094 | enst00000594551 | sg00000032444 | pnpla6-207 | 19 | 7540038 | 7541632 | + | mRNA | protein_coding |
| -328149 | enst00000595264 | sg00000032444 | pnpla6-211 | 19 | 7539983 | 7542670 | + | mRNA | protein_coding |
| -331789 | enst00000598462 | sg00000032444 | pnpla6-216 | 19 | 7536343 | 7540709 | + | lnc_RNA | retained_intron |
| -332151 | enst00000602191 | sg00000032444 | pnpla6-224 | 19 | 7535981 | 7540158 | + | lnc_RNA | retained_intron |
| -332426 | enst00000600737 | sg00000032444 | pnpla6-220 | 19 | 7535706 | 7561576 | + | mRNA | protein_coding |
| -333107 | enst00000593924 | sg00000032444 | pnpla6-205 | 19 | 7535025 | 7539974 | + | mRNA | protein_coding |
| -333185 | enst00000600942 | sg00000032444 | pnpla6-221 | 19 | 7534947 | 7540172 | + | mRNA | protein_coding |
| -333382 | enst00000414982 | sg00000032444 | pnpla6-202 | 19 | 7534750 | 7561761 | + | mRNA | protein_coding |
| -333382 | enst00000450331 | sg00000032444 | pnpla6-203 | 19 | 7534750 | 7561764 | + | mRNA | protein_coding |
| -333615 | enst00000596515 | sg00000032444 | pnpla6-214 | 19 | 7534517 | 7536020 | + | mRNA | protein_coding |
| -333890 | enst00000545201 | sg00000032444 | pnpla6-204 | 19 | 7534242 | 7561761 | + | mRNA | protein_coding |
| -333933 | enst00000601001 | sg00000032444 | pnpla6-222 | 19 | 7534199 | 7540254 | + | mRNA | protein_coding |
| -333941 | enst00000594098 | sg00000032444 | pnpla6-206 | 19 | 7534191 | 7534834 | + | lnc_RNA | retained_intron |
| -333979 | enst00000601668 | sg00000032444 | pnpla6-223 | 19 | 7534153 | 7540024 | + | mRNA | protein_coding |
| -333980 | enst00000594754 | sg00000032444 | pnpla6-208 | 19 | 7534152 | 7535582 | + | lnc_RNA | retained_intron |
| -334128 | enst00000221249 | sg00000032444 | pnpla6-201 | 19 | 7534004 | 7561764 | + | mRNA | protein_coding |
| -334537 | enst00000601870 | sg00000268614 | ac008878.2-201 | 19 | 7533595 | 7540059 | + | mRNA | nonsense_mediated_decay |
| -334738 | enst00000602227 | sg00000090674 | mcoln1-210 | 19 | 7533394 | 7533990 | + | lnc_RNA | retained_intron |
| 336602 | enst00000561008 | sg00000090661 | cers4-212 | 19 | 8206736 | 8254602 | + | mRNA | protein_coding |
| -339161 | enst00000594692 | sg00000090674 | mcoln1-203 | 19 | 7528971 | 7530400 | + | lnc_RNA | retained_intron |
| 339169 | enst00000558268 | sg00000090661 | cers4-203 | 19 | 8209303 | 8255655 | + | mRNA | protein_coding |
| -339172 | enst00000599334 | sg00000090674 | mcoln1-208 | 19 | 7528960 | 7533990 | + | mRNA | protein_coding |
| 339179 | enst00000558331 | sg00000090661 | cers4-205 | 19 | 8209313 | 8262421 | + | mRNA | protein_coding |
| 339192 | enst00000561053 | sg00000090661 | cers4-213 | 19 | 8209326 | 8255724 | + | mRNA | protein_coding |
| 339206 | enst00000559490 | sg00000090661 | cers4-210 | 19 | 8209340 | 8241370 | + | lnc_RNA | processed_transcript |
| 339222 | enst00000559450 | sg00000090661 | cers4-209 | 19 | 8209356 | 8262421 | + | mRNA | protein_coding |
| 339236 | enst00000251363 | sg00000090661 | cers4-201 | 19 | 8209370 | 8262421 | + | mRNA | protein_coding |
| 339237 | enst00000559336 | sg00000090661 | cers4-208 | 19 | 8209371 | 8262421 | + | mRNA | protein_coding |
| 339242 | enst00000600912 | sg00000090661 | cers4-216 | 19 | 8209376 | 8214529 | + | lnc_RNA | processed_transcript |
| 339249 | enst00000595722 | sg00000090661 | cers4-214 | 19 | 8209383 | 8262421 | + | lnc_RNA | processed_transcript |
| 339297 | enst00000558501 | sg00000090661 | cers4-206 | 19 | 8209431 | 8257161 | + | lnc_RNA | retained_intron |
| -339478 | enst00000595860 | sg00000090674 | mcoln1-204 | 19 | 7528654 | 7530501 | + | lnc_RNA | retained_intron |
| 339500 | enst00000560412 | sg00000090661 | cers4-211 | 19 | 8209634 | 8251171 | + | mRNA | protein_coding |
| -341751 | enst00000598406 | sg00000090674 | mcoln1-207 | 19 | 7526381 | 7527771 | + | lnc_RNA | retained_intron |
| -341892 | enst00000596008 | sg00000090674 | mcoln1-205 | 19 | 7526240 | 7527165 | + | lnc_RNA | retained_intron |
| -345445 | enst00000601003 | sg00000090674 | mcoln1-209 | 19 | 7522687 | 7527894 | + | mRNA | protein_coding |
| -345461 | enst00000394321 | sg00000090674 | mcoln1-202 | 19 | 7522671 | 7533990 | + | lnc_RNA | retained_intron |
| -345497 | enst00000596390 | sg00000090674 | mcoln1-206 | 19 | 7522635 | 7525991 | + | lnc_RNA | retained_intron |
| -345508 | enst00000264079 | sg00000090674 | mcoln1-201 | 19 | 7522624 | 7534009 | + | mRNA | protein_coding |
| -347672 | enst00000602083 | sg00000269371 | ac008878.4-201 | 19 | 7519916 | 7520460 | - | lnc_RNA | lncrna |
| -352029 | enst00000597229 | sg00000198816 | znf358-202 | 19 | 7516103 | 7521025 | + | mRNA | protein_coding |
| -352840 | enst00000596712 | sg00000198816 | znf358-201 | 19 | 7515292 | 7519751 | + | mRNA | protein_coding |
| 354893 | enst00000558877 | sg00000090661 | cers4-207 | 19 | 8225027 | 8256675 | + | mRNA | protein_coding |
| -361050 | enst00000599312 | sg00000267952 | ac008878.1-202 | 19 | 7507082 | 7519526 | + | mRNA | protein_coding |
| -361080 | enst00000597384 | sg00000267952 | ac008878.1-201 | 19 | 7507052 | 7519622 | + | lnc_RNA | retained_intron |
| -361337 | enst00000601292 | sg00000198723 | tex45-207 | 19 | 7506795 | 7508447 | + | lnc_RNA | retained_intron |
| -362612 | enst00000600112 | sg00000198723 | tex45-205 | 19 | 7505520 | 7506700 | + | lnc_RNA | retained_intron |
| -366859 | enst00000596524 | sg00000198723 | tex45-203 | 19 | 7501273 | 7506066 | + | mRNA | nonsense_mediated_decay |
| -368490 | enst00000601176 | sg00000198723 | tex45-206 | 19 | 7499642 | 7501399 | + | mRNA | protein_coding |
| -369205 | enst00000597207 | sg00000198723 | tex45-204 | 19 | 7498927 | 7501364 | + | mRNA | protein_coding |
| 369514 | enst00000605980 | sg00000271717 | ac022146.2-201 | 19 | 8222153 | 8239648 | - | lnc_RNA | lncrna |
| -370584 | enst00000361664 | sg00000198723 | tex45-201 | 19 | 7497548 | 7508450 | + | mRNA | protein_coding |
| -370683 | enst00000593942 | sg00000104883 | pex11g-203 | 19 | 7476876 | 7497449 | - | mRNA | protein_coding |
| -375156 | enst00000596132 | sg00000198723 | tex45-202 | 19 | 7492976 | 7504213 | + | mRNA | protein_coding |
| -379097 | enst00000221480 | sg00000104883 | pex11g-201 | 19 | 7476875 | 7489035 | - | mRNA | protein_coding |
| -379160 | enst00000593547 | sg00000104883 | pex11g-202 | 19 | 7476901 | 7488972 | - | mRNA | protein_coding |
| 380392 | enst00000557925 | sg00000090661 | cers4-202 | 19 | 8250526 | 8262418 | + | lnc_RNA | retained_intron |
| -384820 | enst00000599519 | sg00000104883 | pex11g-204 | 19 | 7476894 | 7483312 | - | lnc_RNA | processed_transcript |
| 390863 | enst00000558302 | sg00000090661 | cers4-204 | 19 | 8260997 | 8261779 | + | lnc_RNA | processed_transcript |
| 391493 | enst00000599275 | sg00000090661 | cers4-215 | 19 | 8261627 | 8262421 | + | lnc_RNA | retained_intron |
| -421069 | enst00000594665 | sg00000104880 | arhgef18-203 | 19 | 7447063 | 7472477 | + | mRNA | protein_coding |
| -426413 | enst00000595600 | sg00000104880 | arhgef18-204 | 19 | 7441719 | 7444429 | + | lnc_RNA | retained_intron |
| -428444 | enst00000617428 | sg00000104880 | arhgef18-206 | 19 | 7439688 | 7472484 | + | mRNA | protein_coding |
| -428444 | enst00000359920 | sg00000104880 | arhgef18-202 | 19 | 7439688 | 7472477 | + | mRNA | protein_coding |
| 438137 | enst00000599573 | sg00000167775 | cd320-206 | 19 | 8302317 | 8308271 | - | mRNA | nonsense_mediated_decay |
| 438166 | enst00000596002 | sg00000167775 | cd320-203 | 19 | 8302127 | 8308300 | - | mRNA | nonsense_mediated_decay |
| 438201 | enst00000598299 | sg00000167775 | cd320-205 | 19 | 8304767 | 8308335 | - | lnc_RNA | retained_intron |
| 438216 | enst00000537716 | sg00000167775 | cd320-202 | 19 | 8302127 | 8308350 | - | mRNA | protein_coding |
| 438222 | enst00000596246 | sg00000167775 | cd320-204 | 19 | 8305635 | 8308356 | - | lnc_RNA | processed_transcript |
| 438224 | enst00000301458 | sg00000167775 | cd320-201 | 19 | 8302127 | 8308358 | - | mRNA | protein_coding |
| 446678 | enst00000601258 | sg00000267855 | ndufa7-205 | 19 | 8311366 | 8316812 | - | lnc_RNA | retained_intron |
| 449426 | enst00000602059 | sg00000267855 | ndufa7-206 | 19 | 8310505 | 8319560 | - | lnc_RNA | retained_intron |
| 451024 | enst00000449223 | sg00000233927 | rps28-202 | 19 | 8321158 | 8322946 | + | lnc_RNA | retained_intron |
| 451241 | enst00000593729 | sg00000267855 | ndufa7-202 | 19 | 8308768 | 8321375 | - | mRNA | nonsense_mediated_decay |
| 451241 | enst00000601101 | sg00000267855 | ndufa7-204 | 19 | 8308773 | 8321375 | - | mRNA | nonsense_mediated_decay |
| 451241 | enst00000595856 | sg00000267855 | ndufa7-203 | 19 | 8308878 | 8321375 | - | mRNA | nonsense_mediated_decay |
| 451241 | enst00000301457 | sg00000267855 | ndufa7-201 | 19 | 8311284 | 8321375 | - | mRNA | protein_coding |
| 451245 | enst00000598884 | sg00000167774 | ac010323.1-201 | 19 | 8308283 | 8321379 | - | mRNA | nonsense_mediated_decay |
| 451361 | enst00000602140 | sg00000233927 | rps28-204 | 19 | 8321495 | 8322492 | + | lnc_RNA | retained_intron |
| 451362 | enst00000600659 | sg00000233927 | rps28-203 | 19 | 8321496 | 8323340 | + | mRNA | protein_coding |
| 451500 | enst00000417088 | sg00000233927 | rps28-201 | 19 | 8321634 | 8322396 | + | lnc_RNA | retained_intron |
| 464296 | enst00000610351 | sg00000186994 | kank3-205 | 19 | 8332745 | 8334430 | - | mRNA | protein_coding |
| 464648 | enst00000593331 | sg00000186994 | kank3-202 | 19 | 8334113 | 8334782 | - | lnc_RNA | retained_intron |
| -472980 | enst00000599752 | sg00000104880 | arhgef18-205 | 19 | 7395152 | 7441990 | + | mRNA | protein_coding |
| -473019 | enst00000319670 | sg00000104880 | arhgef18-201 | 19 | 7395113 | 7472477 | + | mRNA | protein_coding |
| -473093 | enst00000596946 | sg00000267852 | ac119396.2-201 | 19 | 7390522 | 7395039 | - | lnc_RNA | lncrna |
| 473128 | enst00000595639 | sg00000186994 | kank3-204 | 19 | 8333217 | 8343262 | - | mRNA | protein_coding |
| 473128 | enst00000330915 | sg00000186994 | kank3-201 | 19 | 8322584 | 8343262 | - | mRNA | protein_coding |
| 473128 | enst00000593649 | sg00000186994 | kank3-203 | 19 | 8323315 | 8343262 | - | mRNA | protein_coding |
| 476383 | enst00000596405 | sg00000268884 | ac010323.2-201 | 19 | 8346517 | 8347687 | + | pseudogenic_transcript | processed_pseudogene |
| -485298 | enst00000668164 | sg00000268861 | ac008878.3-201 | 19 | 7382834 | 7470241 | + | mRNA | protein_coding |
| 493155 | enst00000601886 | sg00000167772 | angptl4-211 | 19 | 8363289 | 8364609 | + | mRNA | protein_coding |
| 493165 | enst00000599192 | sg00000167772 | angptl4-209 | 19 | 8363299 | 8364635 | + | mRNA | protein_coding |
| 493165 | enst00000597137 | sg00000167772 | angptl4-207 | 19 | 8363299 | 8371230 | + | lnc_RNA | retained_intron |
| 493277 | enst00000601770 | sg00000167772 | angptl4-210 | 19 | 8363411 | 8364578 | + | mRNA | protein_coding |
| 494021 | enst00000301455 | sg00000167772 | angptl4-201 | 19 | 8364155 | 8374370 | + | mRNA | protein_coding |
| 494022 | enst00000595079 | sg00000167772 | angptl4-206 | 19 | 8364156 | 8374288 | + | mRNA | nonsense_mediated_decay |
| 494032 | enst00000598255 | sg00000167772 | angptl4-208 | 19 | 8364166 | 8371261 | + | lnc_RNA | retained_intron |
| 494035 | enst00000594348 | sg00000167772 | angptl4-204 | 19 | 8364169 | 8371262 | + | lnc_RNA | retained_intron |
| 494035 | enst00000393962 | sg00000167772 | angptl4-202 | 19 | 8364169 | 8374331 | + | mRNA | protein_coding |
| 494035 | enst00000593998 | sg00000167772 | angptl4-203 | 19 | 8364169 | 8374370 | + | mRNA | nonsense_mediated_decay |
| 494264 | enst00000594875 | sg00000167772 | angptl4-205 | 19 | 8364398 | 8374370 | + | mRNA | protein_coding |
Source file: /hps/research1/birney/users/adrien/analyses/cancer_DNA_promethion/run_1_2_3_4/DNA_pipeline_2/results/methylation/pycometh_meth_comp_CGI_3/out.tsv.gz
MD5 hash: 9aa0e3f69cb4e12345c3758eb68a5efc