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CpG interval report generated on 20/05/20 with pycoMeth 0.4.6
Interval details
| pvalue rank | chromosome | start | end | length | number of samples | number of CpGs | pvalue | adjusted pvalue |
|---|---|---|---|---|---|---|---|---|
| #139 | 3 | 9945833 | 9948110 | 2277 | 3 | 72 | 4.64386e-16 | 3.32253e-14 |
Methylation log-likelihood ratio by CpG position
Distribution of CpG methylation log-likelihood ratio by sample
Closest transcripts TSS
| distance to tss | transcript id | gene id | transcript name | chromosome | start | end | strand | feature type | transcript biotype |
|---|---|---|---|---|---|---|---|---|---|
| 0 | enst00000431558 | sg00000230082 | prrt3-as1-201 | 3 | 9947404 | 9954787 | + | lnc_RNA | lncrna |
| -3020 | enst00000482691 | sg00000163703 | creld1-209 | 3 | 9942813 | 9944531 | + | lnc_RNA | retained_intron |
| 4264 | enst00000295984 | sg00000163704 | prrt3-201 | 3 | 9945542 | 9952374 | - | mRNA | nonsense_mediated_decay |
| 4280 | enst00000411976 | sg00000163704 | prrt3-202 | 3 | 9948580 | 9952390 | - | mRNA | protein_coding |
| 4298 | enst00000412055 | sg00000163704 | prrt3-203 | 3 | 9945542 | 9952408 | - | mRNA | protein_coding |
| -4678 | enst00000467713 | sg00000163703 | creld1-208 | 3 | 9941155 | 9943480 | + | lnc_RNA | retained_intron |
| -4709 | enst00000489674 | sg00000163703 | creld1-210 | 3 | 9941124 | 9944423 | + | lnc_RNA | processed_transcript |
| -4719 | enst00000435417 | sg00000163703 | creld1-205 | 3 | 9941114 | 9945014 | + | mRNA | protein_coding |
| -4970 | enst00000673935 | sg00000163703 | creld1-214 | 3 | 9940863 | 9944983 | + | mRNA | protein_coding |
| -10127 | enst00000602411 | sg00000269894 | ac018809.1-201 | 3 | 9935706 | 9936258 | + | lnc_RNA | lncrna |
| 10607 | enst00000602436 | sg00000269982 | ac018809.2-201 | 3 | 9958717 | 9962539 | + | lnc_RNA | lncrna |
| -10989 | enst00000673635 | sg00000163703 | creld1-212 | 3 | 9934844 | 9944972 | + | mRNA | nonsense_mediated_decay |
| -11328 | enst00000491527 | sg00000163703 | creld1-211 | 3 | 9934505 | 9935086 | + | lnc_RNA | retained_intron |
| -11350 | enst00000465716 | sg00000163703 | creld1-207 | 3 | 9934483 | 9938579 | + | lnc_RNA | retained_intron |
| -11414 | enst00000414117 | sg00000163703 | creld1-204 | 3 | 9934419 | 9943175 | + | mRNA | nonsense_mediated_decay |
| -11977 | enst00000326434 | sg00000163703 | creld1-201 | 3 | 9933856 | 9945032 | + | mRNA | protein_coding |
| -11988 | enst00000452070 | sg00000163703 | creld1-206 | 3 | 9933845 | 9944999 | + | mRNA | protein_coding |
| -11998 | enst00000674057 | sg00000163703 | creld1-215 | 3 | 9933835 | 9944973 | + | mRNA | nonsense_mediated_decay |
| -11999 | enst00000383811 | sg00000163703 | creld1-202 | 3 | 9933834 | 9945406 | + | mRNA | protein_coding |
| -12011 | enst00000397170 | sg00000163703 | creld1-203 | 3 | 9933822 | 9944994 | + | mRNA | protein_coding |
| -12017 | enst00000673737 | sg00000163703 | creld1-213 | 3 | 9933816 | 9945196 | + | mRNA | nonsense_mediated_decay |
| -13160 | enst00000674067 | sg00000288550 | ac018809.3-202 | 3 | 9932673 | 9945358 | + | mRNA | nonsense_mediated_decay |
| -15010 | enst00000465794 | sg00000163702 | il17rc-218 | 3 | 9930823 | 9932958 | + | lnc_RNA | retained_intron |
| -15251 | enst00000466712 | sg00000163702 | il17rc-220 | 3 | 9930582 | 9932703 | + | lnc_RNA | retained_intron |
| -15981 | enst00000673677 | sg00000288550 | ac018809.3-201 | 3 | 9929852 | 9944995 | + | mRNA | nonsense_mediated_decay |
| -16805 | enst00000497387 | sg00000163702 | il17rc-229 | 3 | 9929028 | 9933620 | + | lnc_RNA | retained_intron |
| -17672 | enst00000461995 | sg00000163702 | il17rc-216 | 3 | 9928161 | 9933148 | + | lnc_RNA | retained_intron |
| -21811 | enst00000464406 | sg00000163702 | il17rc-217 | 3 | 9924022 | 9932701 | + | lnc_RNA | retained_intron |
| -25439 | enst00000478206 | sg00000163702 | il17rc-223 | 3 | 9920394 | 9924268 | + | lnc_RNA | retained_intron |
| -26680 | enst00000391025 | sg00000212327 | rnu6-882p-201 | 3 | 9919051 | 9919153 | - | snRNA | snrna |
| -28450 | enst00000451165 | sg00000163702 | il17rc-212 | 3 | 9917383 | 9924283 | + | mRNA | protein_coding |
| -28517 | enst00000413608 | sg00000163702 | il17rc-205 | 3 | 9917316 | 9933616 | + | mRNA | protein_coding |
| -28670 | enst00000455057 | sg00000163702 | il17rc-215 | 3 | 9917163 | 9933617 | + | mRNA | protein_coding |
| -28678 | enst00000440502 | sg00000163702 | il17rc-211 | 3 | 9917155 | 9920600 | + | mRNA | nonsense_mediated_decay |
| -28691 | enst00000490512 | sg00000163702 | il17rc-226 | 3 | 9917142 | 9924263 | + | lnc_RNA | retained_intron |
| -28699 | enst00000424206 | sg00000163702 | il17rc-207 | 3 | 9917134 | 9924292 | + | mRNA | nonsense_mediated_decay |
| -28708 | enst00000476810 | sg00000163702 | il17rc-222 | 3 | 9917125 | 9924045 | + | mRNA | nonsense_mediated_decay |
| -28708 | enst00000451271 | sg00000163702 | il17rc-214 | 3 | 9917125 | 9933617 | + | mRNA | nonsense_mediated_decay |
| -28714 | enst00000436503 | sg00000163702 | il17rc-209 | 3 | 9917119 | 9930444 | + | mRNA | protein_coding |
| -28724 | enst00000494365 | sg00000163702 | il17rc-227 | 3 | 9917109 | 9933616 | + | lnc_RNA | retained_intron |
| -28724 | enst00000497102 | sg00000163702 | il17rc-228 | 3 | 9917109 | 9918076 | + | lnc_RNA | retained_intron |
| -28731 | enst00000481032 | sg00000163702 | il17rc-224 | 3 | 9917102 | 9917957 | + | lnc_RNA | retained_intron |
| -28735 | enst00000295981 | sg00000163702 | il17rc-201 | 3 | 9917098 | 9933620 | + | mRNA | protein_coding |
| -28735 | enst00000403601 | sg00000163702 | il17rc-203 | 3 | 9917098 | 9933621 | + | mRNA | protein_coding |
| -28735 | enst00000469686 | sg00000163702 | il17rc-221 | 3 | 9917098 | 9917965 | + | lnc_RNA | retained_intron |
| -28735 | enst00000434756 | sg00000163702 | il17rc-208 | 3 | 9917098 | 9928385 | + | mRNA | nonsense_mediated_decay |
| -28735 | enst00000438091 | sg00000163702 | il17rc-210 | 3 | 9917098 | 9928630 | + | mRNA | protein_coding |
| -28735 | enst00000412901 | sg00000163702 | il17rc-204 | 3 | 9917098 | 9929880 | + | mRNA | nonsense_mediated_decay |
| -28735 | enst00000466046 | sg00000163702 | il17rc-219 | 3 | 9917098 | 9933593 | + | lnc_RNA | retained_intron |
| -28735 | enst00000498214 | sg00000163702 | il17rc-230 | 3 | 9917098 | 9933617 | + | mRNA | nonsense_mediated_decay |
| -28735 | enst00000451231 | sg00000163702 | il17rc-213 | 3 | 9917098 | 9933620 | + | mRNA | nonsense_mediated_decay |
| -28735 | enst00000483582 | sg00000163702 | il17rc-225 | 3 | 9917098 | 9933630 | + | lnc_RNA | retained_intron |
| -28759 | enst00000383812 | sg00000163702 | il17rc-202 | 3 | 9917074 | 9933621 | + | mRNA | protein_coding |
| -28759 | enst00000416074 | sg00000163702 | il17rc-206 | 3 | 9917074 | 9933620 | + | mRNA | protein_coding |
| 30187 | enst00000497557 | sg00000125037 | emc3-205 | 3 | 9969729 | 9978297 | - | lnc_RNA | processed_transcript |
| -34576 | enst00000480244 | sg00000163701 | il17re-209 | 3 | 9911257 | 9911814 | + | lnc_RNA | retained_intron |
| -34968 | enst00000483258 | sg00000163701 | il17re-210 | 3 | 9910865 | 9911405 | + | lnc_RNA | retained_intron |
| 38572 | enst00000429759 | sg00000125037 | emc3-202 | 3 | 9973506 | 9986682 | - | mRNA | protein_coding |
| 38728 | enst00000487465 | sg00000125037 | emc3-204 | 3 | 9968644 | 9986838 | - | lnc_RNA | retained_intron |
| 38783 | enst00000366264 | sg00000180385 | emc3-as1-202 | 3 | 9986893 | 10002765 | + | lnc_RNA | processed_transcript |
| 38801 | enst00000326237 | sg00000180385 | emc3-as1-201 | 3 | 9986911 | 10005244 | + | lnc_RNA | processed_transcript |
| 39010 | enst00000245046 | sg00000125037 | emc3-201 | 3 | 9962537 | 9987120 | - | mRNA | protein_coding |
| 39105 | enst00000440568 | sg00000180385 | emc3-as1-206 | 3 | 9987215 | 10003097 | + | lnc_RNA | processed_transcript |
| 39794 | enst00000438698 | sg00000180385 | emc3-as1-205 | 3 | 9987904 | 9994331 | + | pseudogenic_transcript | transcribed_unprocessed_pseudogene |
| 40595 | enst00000424904 | sg00000180385 | emc3-as1-203 | 3 | 9988705 | 10003106 | + | lnc_RNA | processed_transcript |
| -42951 | enst00000454992 | sg00000163701 | il17re-207 | 3 | 9902882 | 9907074 | + | mRNA | protein_coding |
| -42983 | enst00000383815 | sg00000163701 | il17re-202 | 3 | 9902850 | 9916398 | + | mRNA | nonsense_mediated_decay |
| -42985 | enst00000454190 | sg00000163701 | il17re-206 | 3 | 9902848 | 9916402 | + | mRNA | protein_coding |
| -42985 | enst00000434065 | sg00000163701 | il17re-204 | 3 | 9902848 | 9916395 | + | mRNA | nonsense_mediated_decay |
| -42985 | enst00000444427 | sg00000163701 | il17re-205 | 3 | 9902848 | 9911538 | + | mRNA | nonsense_mediated_decay |
| -42985 | enst00000383814 | sg00000163701 | il17re-201 | 3 | 9902848 | 9916397 | + | mRNA | protein_coding |
| -43002 | enst00000489181 | sg00000163701 | il17re-211 | 3 | 9902831 | 9910390 | + | lnc_RNA | retained_intron |
| -43214 | enst00000421412 | sg00000163701 | il17re-203 | 3 | 9902619 | 9915844 | + | mRNA | protein_coding |
| -43221 | enst00000461534 | sg00000163701 | il17re-208 | 3 | 9902612 | 9903380 | + | lnc_RNA | retained_intron |
| 52830 | enst00000417973 | sg00000232901 | cycsp10-201 | 3 | 10000647 | 10000940 | - | pseudogenic_transcript | processed_pseudogene |
| -55223 | enst00000647897 | sg00000171135 | jagn1-202 | 3 | 9890610 | 9894349 | + | mRNA | protein_coding |
| -55259 | enst00000489724 | sg00000171135 | jagn1-201 | 3 | 9890574 | 9893883 | + | mRNA | protein_coding |
| 56158 | enst00000430621 | sg00000180385 | emc3-as1-204 | 3 | 10004268 | 10006990 | + | lnc_RNA | processed_transcript |
| 60370 | enst00000621000 | sg00000206567 | ac022007.1-207 | 3 | 10007344 | 10008480 | - | lnc_RNA | lncrna |
| 61021 | enst00000420091 | sg00000206567 | ac022007.1-202 | 3 | 10006445 | 10009131 | - | lnc_RNA | lncrna |
| 62985 | enst00000383808 | sg00000206567 | ac022007.1-201 | 3 | 10004048 | 10011095 | - | lnc_RNA | lncrna |
| 63004 | enst00000426698 | sg00000206567 | ac022007.1-205 | 3 | 10008303 | 10011114 | - | lnc_RNA | lncrna |
| 63006 | enst00000470827 | sg00000125037 | emc3-203 | 3 | 9977029 | 10011116 | - | mRNA | protein_coding |
| 63066 | enst00000437616 | sg00000206567 | ac022007.1-203 | 3 | 10007426 | 10011176 | - | lnc_RNA | lncrna |
| 63067 | enst00000429065 | sg00000206567 | ac022007.1-206 | 3 | 10009888 | 10011177 | - | lnc_RNA | lncrna |
| 63099 | enst00000454232 | sg00000206567 | ac022007.1-204 | 3 | 10007462 | 10011209 | - | lnc_RNA | lncrna |
| -65579 | enst00000487454 | sg00000187288 | cidec-207 | 3 | 9877883 | 9880254 | - | lnc_RNA | retained_intron |
| -65579 | enst00000618572 | sg00000187288 | cidec-208 | 3 | 9866711 | 9880254 | - | mRNA | protein_coding |
| -65582 | enst00000423850 | sg00000187288 | cidec-203 | 3 | 9866714 | 9880251 | - | mRNA | protein_coding |
| -66777 | enst00000336832 | sg00000187288 | cidec-201 | 3 | 9866714 | 9879056 | - | mRNA | protein_coding |
| -66777 | enst00000455015 | sg00000187288 | cidec-206 | 3 | 9866714 | 9879056 | - | mRNA | protein_coding |
| -67021 | enst00000383817 | sg00000187288 | cidec-202 | 3 | 9866711 | 9878812 | - | mRNA | protein_coding |
| -67322 | enst00000430427 | sg00000187288 | cidec-204 | 3 | 9867029 | 9878511 | - | mRNA | protein_coding |
| -67345 | enst00000443115 | sg00000187288 | cidec-205 | 3 | 9867063 | 9878488 | - | mRNA | protein_coding |
| 75637 | enst00000433871 | sg00000186162 | cidecp1-205 | 3 | 10017490 | 10023747 | - | pseudogenic_transcript | transcribed_unprocessed_pseudogene |
| 78216 | enst00000445082 | sg00000186162 | cidecp1-206 | 3 | 10022927 | 10026326 | - | lnc_RNA | processed_transcript |
| 78247 | enst00000424471 | sg00000186162 | cidecp1-202 | 3 | 10017753 | 10026357 | - | lnc_RNA | processed_transcript |
| 78247 | enst00000432401 | sg00000186162 | cidecp1-204 | 3 | 10014238 | 10026357 | - | lnc_RNA | processed_transcript |
| 78250 | enst00000335507 | sg00000186162 | cidecp1-201 | 3 | 10015123 | 10026360 | - | lnc_RNA | processed_transcript |
| 78255 | enst00000424691 | sg00000186162 | cidecp1-203 | 3 | 10017497 | 10026365 | - | lnc_RNA | processed_transcript |
| 78304 | enst00000287647 | sg00000144554 | fancd2-201 | 3 | 10026414 | 10099660 | + | mRNA | protein_coding |
| 78319 | enst00000383807 | sg00000144554 | fancd2-202 | 3 | 10026429 | 10101930 | + | mRNA | protein_coding |
| 78358 | enst00000435522 | sg00000144554 | fancd2-206 | 3 | 10026468 | 10034513 | + | mRNA | nonsense_mediated_decay |
| 78389 | enst00000419585 | sg00000144554 | fancd2-203 | 3 | 10026499 | 10101930 | + | mRNA | protein_coding |
| 80510 | enst00000431693 | sg00000144554 | fancd2-205 | 3 | 10028620 | 10041562 | + | mRNA | protein_coding |
| 80548 | enst00000625535 | sg00000144554 | fancd2-213 | 3 | 10028658 | 10032351 | + | mRNA | protein_coding |
| 86597 | enst00000438741 | sg00000144554 | fancd2-207 | 3 | 10034707 | 10040684 | + | lnc_RNA | processed_transcript |
| 89442 | enst00000364312 | sg00000201182 | rnu6-670p-201 | 3 | 10037552 | 10037655 | + | snRNA | snrna |
| 97417 | enst00000483276 | sg00000144554 | fancd2-212 | 3 | 10045527 | 10048059 | + | lnc_RNA | processed_transcript |
| 98317 | enst00000464934 | sg00000144554 | fancd2-208 | 3 | 10046427 | 10049504 | + | lnc_RNA | retained_intron |
| -101231 | enst00000485705 | sg00000156990 | rpusd3-217 | 3 | 9841736 | 9844602 | - | lnc_RNA | processed_transcript |
| 101352 | enst00000421731 | sg00000144554 | fancd2-204 | 3 | 10049462 | 10101926 | + | mRNA | nonsense_mediated_decay |
| -101774 | enst00000433972 | sg00000156990 | rpusd3-208 | 3 | 9841257 | 9844059 | - | mRNA | protein_coding |
| -101815 | enst00000472381 | sg00000156990 | rpusd3-213 | 3 | 9840682 | 9844018 | - | lnc_RNA | retained_intron |
| -101817 | enst00000484134 | sg00000156990 | rpusd3-216 | 3 | 9839901 | 9844016 | - | lnc_RNA | retained_intron |
| -101817 | enst00000383820 | sg00000156990 | rpusd3-201 | 3 | 9837849 | 9844016 | - | mRNA | protein_coding |
| -101817 | enst00000460909 | sg00000156990 | rpusd3-210 | 3 | 9843151 | 9844016 | - | lnc_RNA | retained_intron |
| -101819 | enst00000433535 | sg00000156990 | rpusd3-206 | 3 | 9837849 | 9844014 | - | mRNA | protein_coding |
| -101831 | enst00000418713 | sg00000156990 | rpusd3-202 | 3 | 9839941 | 9844002 | - | mRNA | protein_coding |
| -101838 | enst00000451405 | sg00000156990 | rpusd3-209 | 3 | 9841698 | 9843995 | - | mRNA | nonsense_mediated_decay |
| -101847 | enst00000427174 | sg00000156990 | rpusd3-205 | 3 | 9838165 | 9843986 | - | mRNA | protein_coding |
| -101857 | enst00000433555 | sg00000156990 | rpusd3-207 | 3 | 9841408 | 9843976 | - | mRNA | protein_coding |
| -101891 | enst00000424438 | sg00000156990 | rpusd3-204 | 3 | 9838020 | 9843942 | - | mRNA | protein_coding |
| -102096 | enst00000473522 | sg00000156990 | rpusd3-214 | 3 | 9841854 | 9843737 | - | lnc_RNA | processed_transcript |
| -102262 | enst00000475470 | sg00000156990 | rpusd3-215 | 3 | 9839901 | 9843571 | - | lnc_RNA | retained_intron |
| -104967 | enst00000464783 | sg00000156990 | rpusd3-211 | 3 | 9837882 | 9840866 | - | lnc_RNA | retained_intron |
| -105216 | enst00000423108 | sg00000156990 | rpusd3-203 | 3 | 9837849 | 9840617 | - | mRNA | protein_coding |
| -106120 | enst00000466141 | sg00000156990 | rpusd3-212 | 3 | 9837894 | 9839713 | - | lnc_RNA | retained_intron |
| 110177 | enst00000436426 | sg00000229217 | cycsp11-201 | 3 | 10057973 | 10058287 | - | pseudogenic_transcript | processed_pseudogene |
| -111749 | enst00000493241 | sg00000214021 | ttll3-230 | 3 | 9834084 | 9835208 | + | lnc_RNA | retained_intron |
| 116245 | enst00000470757 | sg00000144554 | fancd2-210 | 3 | 10064355 | 10072978 | + | lnc_RNA | processed_transcript |
| 116583 | enst00000480909 | sg00000144554 | fancd2-211 | 3 | 10064693 | 10072964 | + | lnc_RNA | retained_intron |
| -116670 | enst00000471058 | sg00000214021 | ttll3-224 | 3 | 9829163 | 9835403 | + | mRNA | protein_coding |
| -119972 | enst00000466245 | sg00000214021 | ttll3-223 | 3 | 9825861 | 9829335 | + | lnc_RNA | processed_transcript |
| -120267 | enst00000492440 | sg00000214021 | ttll3-229 | 3 | 9825566 | 9828162 | + | lnc_RNA | retained_intron |
| -120427 | enst00000482269 | sg00000214021 | ttll3-227 | 3 | 9825406 | 9829054 | + | lnc_RNA | retained_intron |
| -125484 | enst00000602338 | sg00000214021 | ttll3-233 | 3 | 9820349 | 9821041 | + | lnc_RNA | retained_intron |
| -125539 | enst00000430793 | sg00000214021 | ttll3-213 | 3 | 9820294 | 9835358 | + | mRNA | protein_coding |
| -125539 | enst00000438141 | sg00000214021 | ttll3-215 | 3 | 9820294 | 9835332 | + | mRNA | nonsense_mediated_decay |
| -126530 | enst00000455274 | sg00000214021 | ttll3-221 | 3 | 9819303 | 9855138 | + | mRNA | protein_coding |
| -127272 | enst00000473661 | sg00000214021 | ttll3-225 | 3 | 9818561 | 9835404 | + | mRNA | nonsense_mediated_decay |
| -127461 | enst00000383827 | sg00000214021 | ttll3-202 | 3 | 9818372 | 9836315 | + | mRNA | protein_coding |
| -129759 | enst00000443148 | sg00000214021 | ttll3-218 | 3 | 9816074 | 9835096 | + | mRNA | protein_coding |
| -132524 | enst00000474948 | sg00000214021 | ttll3-226 | 3 | 9813309 | 9820616 | + | mRNA | nonsense_mediated_decay |
| -132524 | enst00000452823 | sg00000214021 | ttll3-220 | 3 | 9813309 | 9825901 | + | mRNA | protein_coding |
| -132526 | enst00000496246 | sg00000214021 | ttll3-231 | 3 | 9813307 | 9820647 | + | mRNA | nonsense_mediated_decay |
| -132530 | enst00000496526 | sg00000214021 | ttll3-232 | 3 | 9813303 | 9835403 | + | lnc_RNA | retained_intron |
| -132539 | enst00000310252 | sg00000214021 | ttll3-201 | 3 | 9813294 | 9834821 | + | mRNA | protein_coding |
| -132585 | enst00000483051 | sg00000214021 | ttll3-228 | 3 | 9813248 | 9836315 | + | lnc_RNA | retained_intron |
| -132736 | enst00000602768 | sg00000269886 | ac022382.1-201 | 3 | 9812762 | 9813097 | - | lnc_RNA | lncrna |
| -135163 | enst00000430390 | sg00000214021 | ttll3-211 | 3 | 9810670 | 9835404 | + | mRNA | nonsense_mediated_decay |
| -135231 | enst00000422738 | sg00000214021 | ttll3-207 | 3 | 9810602 | 9818921 | + | mRNA | protein_coding |
| -135586 | enst00000426827 | sg00000214021 | ttll3-208 | 3 | 9810247 | 9817767 | + | mRNA | protein_coding |
| -135586 | enst00000431204 | sg00000214021 | ttll3-214 | 3 | 9810247 | 9829252 | + | mRNA | nonsense_mediated_decay |
| -135845 | enst00000426895 | sg00000214021 | ttll3-209 | 3 | 9809988 | 9836354 | + | mRNA | protein_coding |
| -135898 | enst00000427220 | sg00000214021 | ttll3-210 | 3 | 9809935 | 9835404 | + | mRNA | nonsense_mediated_decay |
| -135959 | enst00000430718 | sg00000214021 | ttll3-212 | 3 | 9809874 | 9816204 | + | mRNA | protein_coding |
| -136093 | enst00000418745 | sg00000214021 | ttll3-205 | 3 | 9809740 | 9816125 | + | mRNA | protein_coding |
| -136093 | enst00000439814 | sg00000214021 | ttll3-217 | 3 | 9809740 | 9816105 | + | mRNA | protein_coding |
| -136112 | enst00000417065 | sg00000214021 | ttll3-204 | 3 | 9809721 | 9818871 | + | mRNA | protein_coding |
| -136112 | enst00000459758 | sg00000214021 | ttll3-222 | 3 | 9809721 | 9817799 | + | lnc_RNA | retained_intron |
| -136112 | enst00000438596 | sg00000214021 | ttll3-216 | 3 | 9809721 | 9817658 | + | mRNA | protein_coding |
| -136133 | enst00000419081 | sg00000214021 | ttll3-206 | 3 | 9809700 | 9817656 | + | mRNA | protein_coding |
| -137316 | enst00000452597 | sg00000214021 | ttll3-219 | 3 | 9808517 | 9816179 | + | mRNA | protein_coding |
| 137718 | enst00000450616 | sg00000163705 | fancd2os-203 | 3 | 10081320 | 10085828 | - | lnc_RNA | processed_transcript |
| -137747 | enst00000414814 | sg00000214021 | ttll3-203 | 3 | 9808086 | 9816094 | + | mRNA | protein_coding |
| 145178 | enst00000470028 | sg00000144554 | fancd2-209 | 3 | 10093288 | 10101282 | + | lnc_RNA | processed_transcript |
| 147237 | enst00000436517 | sg00000163705 | fancd2os-202 | 3 | 10081320 | 10095347 | - | lnc_RNA | processed_transcript |
| -148175 | enst00000453882 | sg00000250151 | arpc4-ttll3-204 | 3 | 9797658 | 9813038 | + | mRNA | protein_coding |
| -152716 | enst00000433034 | sg00000241553 | arpc4-203 | 3 | 9793117 | 9806572 | + | mRNA | protein_coding |
| -152719 | enst00000397256 | sg00000250151 | arpc4-ttll3-201 | 3 | 9793114 | 9835401 | + | mRNA | protein_coding |
| -152737 | enst00000485273 | sg00000241553 | arpc4-207 | 3 | 9793096 | 9804013 | + | mRNA | protein_coding |
| -152738 | enst00000467289 | sg00000241553 | arpc4-205 | 3 | 9793095 | 9804214 | + | lnc_RNA | retained_intron |
| -152740 | enst00000440787 | sg00000241553 | arpc4-204 | 3 | 9793093 | 9806417 | + | mRNA | nonsense_mediated_decay |
| -152751 | enst00000424442 | sg00000250151 | arpc4-ttll3-203 | 3 | 9793082 | 9813351 | + | mRNA | nonsense_mediated_decay |
| -152751 | enst00000418163 | sg00000250151 | arpc4-ttll3-202 | 3 | 9793082 | 9813071 | + | mRNA | nonsense_mediated_decay |
| -152751 | enst00000417500 | sg00000241553 | arpc4-202 | 3 | 9793082 | 9806436 | + | mRNA | nonsense_mediated_decay |
| -152751 | enst00000479956 | sg00000241553 | arpc4-206 | 3 | 9793082 | 9798121 | + | lnc_RNA | retained_intron |
| -152822 | enst00000440161 | sg00000171148 | tada3-204 | 3 | 9780256 | 9793011 | - | mRNA | protein_coding |
| -153050 | enst00000439043 | sg00000171148 | tada3-203 | 3 | 9789885 | 9792783 | - | mRNA | protein_coding |
| -153086 | enst00000301964 | sg00000171148 | tada3-201 | 3 | 9779860 | 9792747 | - | mRNA | protein_coding |
| -153097 | enst00000343450 | sg00000171148 | tada3-202 | 3 | 9783128 | 9792736 | - | mRNA | protein_coding |
| -153275 | enst00000397261 | sg00000241553 | arpc4-201 | 3 | 9792558 | 9807726 | + | mRNA | protein_coding |
| -153338 | enst00000498623 | sg00000241553 | arpc4-208 | 3 | 9792495 | 9806442 | + | mRNA | protein_coding |
| -153425 | enst00000492635 | sg00000171148 | tada3-206 | 3 | 9789703 | 9792408 | - | lnc_RNA | processed_transcript |
| 156658 | enst00000453223 | sg00000163705 | fancd2os-205 | 3 | 10102903 | 10104768 | - | mRNA | protein_coding |
| -157750 | enst00000492103 | sg00000171148 | tada3-205 | 3 | 9779967 | 9788083 | - | lnc_RNA | retained_intron |
| 159974 | enst00000431315 | sg00000163705 | fancd2os-201 | 3 | 10081317 | 10108084 | - | lnc_RNA | processed_transcript |
| 160121 | enst00000524279 | sg00000163705 | fancd2os-206 | 3 | 10081320 | 10108231 | - | mRNA | protein_coding |
| 160145 | enst00000450660 | sg00000163705 | fancd2os-204 | 3 | 10103937 | 10108255 | - | mRNA | protein_coding |
| 167565 | enst00000530758 | sg00000254999 | brk1-201 | 3 | 10115675 | 10127190 | + | mRNA | protein_coding |
| -175841 | enst00000411972 | sg00000134072 | camk1-203 | 3 | 9761688 | 9769992 | - | mRNA | protein_coding |
| -175872 | enst00000397277 | sg00000134072 | camk1-202 | 3 | 9757392 | 9769961 | - | mRNA | nonsense_mediated_decay |
| -175886 | enst00000256460 | sg00000134072 | camk1-201 | 3 | 9757347 | 9769947 | - | mRNA | protein_coding |
| -184108 | enst00000421120 | sg00000134072 | camk1-204 | 3 | 9757348 | 9761725 | - | mRNA | protein_coding |
| -185263 | enst00000496534 | sg00000134072 | camk1-206 | 3 | 9757347 | 9760570 | - | lnc_RNA | retained_intron |
| -187786 | enst00000482803 | sg00000134072 | camk1-205 | 3 | 9757354 | 9758047 | - | lnc_RNA | retained_intron |
| -188485 | enst00000602976 | sg00000114026 | ogg1-218 | 3 | 9757348 | 9762324 | + | lnc_RNA | retained_intron |
| 192898 | enst00000256474 | sg00000134086 | vhl-201 | 3 | 10141008 | 10152220 | + | mRNA | protein_coding |
| 193678 | enst00000345392 | sg00000134086 | vhl-202 | 3 | 10141788 | 10152082 | + | mRNA | protein_coding |
| -193930 | enst00000416333 | sg00000114026 | ogg1-210 | 3 | 9751903 | 9757191 | + | mRNA | protein_coding |
| -193930 | enst00000383825 | sg00000114026 | ogg1-208 | 3 | 9751903 | 9757191 | + | lnc_RNA | processed_transcript |
| 194436 | enst00000477538 | sg00000134086 | vhl-203 | 3 | 10142546 | 10150145 | + | lnc_RNA | processed_transcript |
| -194741 | enst00000352937 | sg00000114026 | ogg1-207 | 3 | 9751092 | 9766737 | + | mRNA | protein_coding |
| -194754 | enst00000426518 | sg00000114026 | ogg1-212 | 3 | 9751079 | 9788219 | + | mRNA | protein_coding |
| -194869 | enst00000432857 | sg00000114026 | ogg1-214 | 3 | 9750964 | 9752094 | + | lnc_RNA | retained_intron |
| -195478 | enst00000429146 | sg00000114026 | ogg1-213 | 3 | 9750355 | 9756865 | + | mRNA | nonsense_mediated_decay |
| -195487 | enst00000441094 | sg00000114026 | ogg1-216 | 3 | 9750346 | 9757035 | + | mRNA | protein_coding |
| -195746 | enst00000383826 | sg00000114026 | ogg1-209 | 3 | 9750087 | 9766112 | + | mRNA | protein_coding |
| -195750 | enst00000425665 | sg00000114026 | ogg1-211 | 3 | 9750083 | 9757204 | + | mRNA | nonsense_mediated_decay |
| -195760 | enst00000302008 | sg00000114026 | ogg1-202 | 3 | 9750073 | 9766737 | + | mRNA | protein_coding |
| -195761 | enst00000449570 | sg00000114026 | ogg1-217 | 3 | 9750072 | 9766540 | + | mRNA | protein_coding |
| -195815 | enst00000436092 | sg00000114026 | ogg1-215 | 3 | 9750018 | 9751072 | + | lnc_RNA | processed_transcript |
| -195852 | enst00000339511 | sg00000114026 | ogg1-204 | 3 | 9749981 | 9757377 | + | mRNA | protein_coding |
| -195889 | enst00000302036 | sg00000114026 | ogg1-203 | 3 | 9749944 | 9766737 | + | mRNA | protein_coding |
| -195889 | enst00000349503 | sg00000114026 | ogg1-206 | 3 | 9749944 | 9766668 | + | mRNA | protein_coding |
| -195889 | enst00000344629 | sg00000114026 | ogg1-205 | 3 | 9749944 | 9757513 | + | mRNA | protein_coding |
| -195889 | enst00000302003 | sg00000114026 | ogg1-201 | 3 | 9749944 | 9757407 | + | mRNA | protein_coding |
| -203512 | enst00000497565 | sg00000156983 | brpf1-207 | 3 | 9742321 | 9747603 | + | lnc_RNA | retained_intron |
| 205216 | enst00000660063 | sg00000287086 | ac034193.1-201 | 3 | 10149986 | 10153326 | - | lnc_RNA | lncrna |
| -211684 | enst00000672515 | sg00000156983 | brpf1-209 | 3 | 9734149 | 9747491 | + | mRNA | protein_coding |
| -211692 | enst00000672126 | sg00000156983 | brpf1-208 | 3 | 9734141 | 9747817 | + | mRNA | nonsense_mediated_decay |
| -211702 | enst00000673551 | sg00000156983 | brpf1-210 | 3 | 9734131 | 9747830 | + | mRNA | nonsense_mediated_decay |
| -211703 | enst00000457855 | sg00000156983 | brpf1-206 | 3 | 9734130 | 9748001 | + | mRNA | protein_coding |
| -213353 | enst00000426583 | sg00000156983 | brpf1-204 | 3 | 9732480 | 9734456 | + | mRNA | protein_coding |
| -213913 | enst00000424362 | sg00000156983 | brpf1-203 | 3 | 9731920 | 9747998 | + | mRNA | protein_coding |
| -214045 | enst00000420291 | sg00000156983 | brpf1-202 | 3 | 9731788 | 9734350 | + | mRNA | protein_coding |
| -214098 | enst00000383829 | sg00000156983 | brpf1-201 | 3 | 9731735 | 9748015 | + | mRNA | protein_coding |
| -214104 | enst00000433861 | sg00000156983 | brpf1-205 | 3 | 9731729 | 9747873 | + | mRNA | protein_coding |
| 216809 | enst00000256458 | sg00000134070 | irak2-201 | 3 | 10164919 | 10243745 | + | mRNA | protein_coding |
| -224434 | enst00000670966 | sg00000287878 | ac022382.2-201 | 3 | 9693182 | 9721399 | - | lnc_RNA | lncrna |
| -230493 | enst00000273027 | sg00000144550 | cpne9-201 | 3 | 9715340 | 9726713 | + | mRNA | protein_coding |
| -242000 | enst00000383832 | sg00000144550 | cpne9-203 | 3 | 9703833 | 9729908 | + | mRNA | protein_coding |
| -242000 | enst00000491802 | sg00000144550 | cpne9-204 | 3 | 9703833 | 9705033 | + | lnc_RNA | retained_intron |
| -242007 | enst00000613455 | sg00000144550 | cpne9-205 | 3 | 9703826 | 9727441 | + | mRNA | protein_coding |
| -242007 | enst00000383831 | sg00000144550 | cpne9-202 | 3 | 9703826 | 9727450 | + | mRNA | protein_coding |
| -246406 | enst00000606184 | sg00000163719 | mtmr14-213 | 3 | 9699427 | 9702392 | + | lnc_RNA | retained_intron |
| -270319 | enst00000431250 | sg00000163719 | mtmr14-208 | 3 | 9675514 | 9685229 | + | mRNA | protein_coding |
| -277090 | enst00000414996 | sg00000163719 | mtmr14-204 | 3 | 9668743 | 9702387 | + | mRNA | nonsense_mediated_decay |
| -286207 | enst00000449543 | sg00000163719 | mtmr14-211 | 3 | 9659626 | 9678058 | + | mRNA | nonsense_mediated_decay |
| -296224 | enst00000480578 | sg00000163719 | mtmr14-212 | 3 | 9649609 | 9653873 | + | lnc_RNA | retained_intron |
| -296314 | enst00000437997 | sg00000163719 | mtmr14-209 | 3 | 9649519 | 9668752 | + | mRNA | nonsense_mediated_decay |
| -296318 | enst00000416864 | sg00000163719 | mtmr14-205 | 3 | 9649515 | 9683217 | + | mRNA | nonsense_mediated_decay |
| -296321 | enst00000351233 | sg00000163719 | mtmr14-202 | 3 | 9649512 | 9702389 | + | mRNA | protein_coding |
| -296328 | enst00000430020 | sg00000163719 | mtmr14-207 | 3 | 9649505 | 9683728 | + | mRNA | nonsense_mediated_decay |
| -296360 | enst00000447144 | sg00000163719 | mtmr14-210 | 3 | 9649473 | 9702216 | + | mRNA | nonsense_mediated_decay |
| -296371 | enst00000296003 | sg00000163719 | mtmr14-201 | 3 | 9649462 | 9702392 | + | mRNA | protein_coding |
| -296383 | enst00000420925 | sg00000163719 | mtmr14-206 | 3 | 9649450 | 9702387 | + | mRNA | protein_coding |
| -296400 | enst00000353332 | sg00000163719 | mtmr14-203 | 3 | 9649433 | 9702393 | + | mRNA | protein_coding |
| 299913 | enst00000287652 | sg00000157014 | tatdn2-201 | 3 | 10248023 | 10281216 | + | mRNA | protein_coding |
| 300349 | enst00000448281 | sg00000157014 | tatdn2-203 | 3 | 10248459 | 10281218 | + | mRNA | protein_coding |
| 301262 | enst00000437082 | sg00000272410 | ac022384.1-201 | 3 | 10249372 | 10285796 | + | mRNA | nonsense_mediated_decay |
| 301262 | enst00000450534 | sg00000272410 | ac022384.1-202 | 3 | 10249372 | 10285796 | + | mRNA | nonsense_mediated_decay |
| 322810 | enst00000426850 | sg00000157014 | tatdn2-202 | 3 | 10270920 | 10279165 | + | mRNA | protein_coding |
| 328267 | enst00000496355 | sg00000157014 | tatdn2-204 | 3 | 10276377 | 10280133 | + | lnc_RNA | processed_transcript |
| 336309 | enst00000538717 | sg00000231177 | linc00852-202 | 3 | 10284419 | 10285745 | + | lnc_RNA | lncrna |
| 336309 | enst00000475197 | sg00000231177 | linc00852-201 | 3 | 10284419 | 10285746 | + | lnc_RNA | lncrna |
| 337644 | enst00000605014 | sg00000240288 | ghrlos-203 | 3 | 10285754 | 10292917 | + | lnc_RNA | lncrna |
| 337644 | enst00000605105 | sg00000240288 | ghrlos-204 | 3 | 10285754 | 10292917 | + | lnc_RNA | lncrna |
| 337644 | enst00000439539 | sg00000240288 | ghrlos-201 | 3 | 10285754 | 10293449 | + | lnc_RNA | lncrna |
| 339303 | enst00000610995 | sg00000276678 | ac022384.2-201 | 3 | 10287413 | 10287482 | + | ncRNA | misc_rna |
| 339847 | enst00000662597 | sg00000240288 | ghrlos-205 | 3 | 10287957 | 10294903 | + | lnc_RNA | lncrna |
| 339868 | enst00000603771 | sg00000240288 | ghrlos-202 | 3 | 10287978 | 10292580 | + | lnc_RNA | lncrna |
| 341697 | enst00000475759 | sg00000157017 | ghrl-212 | 3 | 10285813 | 10289807 | - | lnc_RNA | processed_transcript |
| 341697 | enst00000476283 | sg00000157017 | ghrl-213 | 3 | 10285813 | 10289807 | - | lnc_RNA | processed_transcript |
| 342102 | enst00000422159 | sg00000157017 | ghrl-203 | 3 | 10285751 | 10290212 | - | mRNA | protein_coding |
| 342247 | enst00000481287 | sg00000157017 | ghrl-214 | 3 | 10285750 | 10290357 | - | lnc_RNA | retained_intron |
| 342804 | enst00000491589 | sg00000157017 | ghrl-215 | 3 | 10285750 | 10290914 | - | lnc_RNA | processed_transcript |
| 344807 | enst00000430179 | sg00000157017 | ghrl-206 | 3 | 10285750 | 10292917 | - | mRNA | protein_coding |
| 344807 | enst00000287656 | sg00000157017 | ghrl-201 | 3 | 10285754 | 10292917 | - | mRNA | protein_coding |
| 344807 | enst00000437422 | sg00000157017 | ghrl-207 | 3 | 10285754 | 10292917 | - | mRNA | protein_coding |
| 344807 | enst00000449238 | sg00000157017 | ghrl-210 | 3 | 10285754 | 10292917 | - | mRNA | protein_coding |
| 344807 | enst00000457360 | sg00000157017 | ghrl-211 | 3 | 10285754 | 10292917 | - | mRNA | protein_coding |
| 344807 | enst00000446937 | sg00000157017 | ghrl-209 | 3 | 10285754 | 10292917 | - | mRNA | protein_coding |
| 344807 | enst00000439975 | sg00000157017 | ghrl-208 | 3 | 10285754 | 10292917 | - | mRNA | protein_coding |
| 344823 | enst00000429122 | sg00000157017 | ghrl-205 | 3 | 10285754 | 10292933 | - | mRNA | protein_coding |
| 344828 | enst00000425479 | sg00000157017 | ghrl-204 | 3 | 10290080 | 10292938 | - | mRNA | protein_coding |
| 344837 | enst00000335542 | sg00000157017 | ghrl-202 | 3 | 10285666 | 10292947 | - | mRNA | protein_coding |
| -345085 | enst00000426873 | sg00000235338 | dusp5p2-201 | 3 | 9600748 | 9602728 | + | pseudogenic_transcript | processed_pseudogene |
| 356962 | enst00000492602 | sg00000157020 | sec13-219 | 3 | 10293131 | 10305072 | - | lnc_RNA | processed_transcript |
| 357600 | enst00000490283 | sg00000157020 | sec13-218 | 3 | 10304111 | 10305710 | - | lnc_RNA | retained_intron |
| 357800 | enst00000476597 | sg00000157020 | sec13-214 | 3 | 10304035 | 10305910 | - | lnc_RNA | retained_intron |
| 364724 | enst00000482647 | sg00000157020 | sec13-217 | 3 | 10311573 | 10312834 | - | lnc_RNA | retained_intron |
| 365861 | enst00000479868 | sg00000157020 | sec13-216 | 3 | 10300933 | 10313971 | - | lnc_RNA | retained_intron |
| 369970 | enst00000477547 | sg00000157020 | sec13-215 | 3 | 10303551 | 10318080 | - | lnc_RNA | retained_intron |
| 372931 | enst00000397109 | sg00000157020 | sec13-208 | 3 | 10300931 | 10321041 | - | mRNA | protein_coding |
| 372946 | enst00000428626 | sg00000157020 | sec13-210 | 3 | 10318068 | 10321056 | - | mRNA | protein_coding |
| 372948 | enst00000445064 | sg00000157020 | sec13-213 | 3 | 10318070 | 10321058 | - | mRNA | protein_coding |
| 372950 | enst00000431352 | sg00000157020 | sec13-211 | 3 | 10312646 | 10321060 | - | mRNA | protein_coding |
| 372951 | enst00000397117 | sg00000157020 | sec13-209 | 3 | 10300950 | 10321061 | - | mRNA | protein_coding |
| 372972 | enst00000337354 | sg00000157020 | sec13-201 | 3 | 10300931 | 10321082 | - | mRNA | protein_coding |
| 372974 | enst00000383801 | sg00000157020 | sec13-203 | 3 | 10300961 | 10321084 | - | mRNA | protein_coding |
| 372976 | enst00000397099 | sg00000157020 | sec13-204 | 3 | 10315142 | 10321086 | - | lnc_RNA | retained_intron |
| 372983 | enst00000397105 | sg00000157020 | sec13-207 | 3 | 10311573 | 10321093 | - | lnc_RNA | retained_intron |
| 372983 | enst00000432213 | sg00000157020 | sec13-212 | 3 | 10319206 | 10321093 | - | mRNA | protein_coding |
| 373002 | enst00000350697 | sg00000157020 | sec13-202 | 3 | 10300931 | 10321112 | - | mRNA | protein_coding |
| 373002 | enst00000397102 | sg00000157020 | sec13-206 | 3 | 10313080 | 10321112 | - | lnc_RNA | retained_intron |
| 373002 | enst00000397101 | sg00000157020 | sec13-205 | 3 | 10314953 | 10321112 | - | lnc_RNA | retained_intron |
| 382119 | enst00000578876 | sg00000264534 | mir378b-201 | 3 | 10330229 | 10330285 | + | miRNA | mirna |
| 384214 | enst00000468426 | sg00000157087 | atp2b2-207 | 3 | 10328811 | 10332324 | - | lnc_RNA | processed_transcript |
| -392011 | enst00000287585 | sg00000156959 | lhfpl4-201 | 3 | 9498361 | 9553822 | - | mRNA | protein_coding |
| -392038 | enst00000498277 | sg00000156959 | lhfpl4-203 | 3 | 9552572 | 9553795 | - | lnc_RNA | processed_transcript |
| -393526 | enst00000495730 | sg00000156959 | lhfpl4-202 | 3 | 9550612 | 9552307 | - | lnc_RNA | processed_transcript |
| 397959 | enst00000467702 | sg00000157087 | atp2b2-206 | 3 | 10326228 | 10346069 | - | mRNA | protein_coding |
| 446452 | enst00000401316 | sg00000216135 | mir885-201 | 3 | 10394489 | 10394562 | - | miRNA | mirna |
| 452915 | enst00000644553 | sg00000157087 | atp2b2-211 | 3 | 10326271 | 10401025 | - | mRNA | protein_coding |
| -470783 | enst00000466826 | sg00000168137 | setd5-216 | 3 | 9475050 | 9475659 | + | lnc_RNA | retained_intron |
| -472410 | enst00000479538 | sg00000168137 | setd5-221 | 3 | 9473423 | 9474971 | + | lnc_RNA | processed_transcript |
| -472438 | enst00000459941 | sg00000168137 | setd5-211 | 3 | 9473395 | 9475705 | + | lnc_RNA | retained_intron |
| -472597 | enst00000492939 | sg00000168137 | setd5-225 | 3 | 9473236 | 9475265 | + | lnc_RNA | retained_intron |
| -475166 | enst00000486465 | sg00000168137 | setd5-222 | 3 | 9470667 | 9474769 | + | lnc_RNA | retained_intron |
| -497274 | enst00000476740 | sg00000168137 | setd5-218 | 3 | 9448559 | 9464693 | + | lnc_RNA | processed_transcript |
| -497358 | enst00000478961 | sg00000168137 | setd5-220 | 3 | 9448475 | 9464810 | + | lnc_RNA | processed_transcript |
| -497445 | enst00000664993 | sg00000168137 | setd5-229 | 3 | 9448388 | 9453868 | + | lnc_RNA | processed_transcript |
| -497863 | enst00000421188 | sg00000168137 | setd5-208 | 3 | 9447970 | 9473372 | + | mRNA | protein_coding |
| -498146 | enst00000488236 | sg00000168137 | setd5-223 | 3 | 9447687 | 9464954 | + | lnc_RNA | processed_transcript |
Source file: /hps/research1/birney/users/adrien/analyses/cancer_DNA_promethion/run_1_2_3_4/DNA_pipeline_2/results/methylation/pycometh_meth_comp_CGI_3/out.tsv.gz
MD5 hash: 9aa0e3f69cb4e12345c3758eb68a5efc