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CpG interval report generated on 20/05/20 with pycoMeth 0.4.6
Interval details
| pvalue rank | chromosome | start | end | length | number of samples | number of CpGs | pvalue | adjusted pvalue |
|---|---|---|---|---|---|---|---|---|
| #136 | 8 | 902134 | 903249 | 1115 | 3 | 36 | 3.20677e-16 | 2.34495e-14 |
Methylation log-likelihood ratio by CpG position
Distribution of CpG methylation log-likelihood ratio by sample
Closest transcripts TSS
| distance to tss | transcript id | gene id | transcript name | chromosome | start | end | strand | feature type | transcript biotype |
|---|---|---|---|---|---|---|---|---|---|
| -9022 | enst00000633456 | sg00000282759 | ac026950.2-201 | 8 | 891251 | 893112 | - | lnc_RNA | lncrna |
| -18806 | enst00000578889 | sg00000198010 | dlgap2-213 | 8 | 883328 | 1105066 | + | lnc_RNA | processed_transcript |
| -18936 | enst00000524139 | sg00000198010 | dlgap2-211 | 8 | 883198 | 1032931 | + | lnc_RNA | processed_transcript |
| -79955 | enst00000421627 | sg00000198010 | dlgap2-201 | 8 | 822179 | 1701406 | + | mRNA | protein_coding |
| 115508 | enst00000634128 | sg00000282692 | ac129915.3-201 | 8 | 1018757 | 1019704 | + | lnc_RNA | lncrna |
| -163586 | enst00000631653 | sg00000282375 | ac100797.5-201 | 8 | 738548 | 740374 | + | lnc_RNA | lncrna |
| -164028 | enst00000518277 | sg00000104714 | erich1-202 | 8 | 673865 | 738106 | - | lnc_RNA | processed_transcript |
| -164392 | enst00000577187 | sg00000198010 | dlgap2-212 | 8 | 737742 | 910575 | + | lnc_RNA | processed_transcript |
| -164470 | enst00000520816 | sg00000198010 | dlgap2-204 | 8 | 737664 | 754258 | + | lnc_RNA | processed_transcript |
| -164483 | enst00000522092 | sg00000198010 | dlgap2-206 | 8 | 737651 | 1137777 | + | lnc_RNA | processed_transcript |
| -164538 | enst00000637795 | sg00000198010 | dlgap2-215 | 8 | 737596 | 1701406 | + | mRNA | protein_coding |
| -170910 | enst00000262109 | sg00000104714 | erich1-201 | 8 | 664200 | 731224 | - | mRNA | protein_coding |
| -170937 | enst00000522706 | sg00000104714 | erich1-206 | 8 | 614746 | 731197 | - | mRNA | protein_coding |
| -176257 | enst00000520760 | sg00000254207 | ac100797.1-201 | 8 | 725188 | 725877 | - | lnc_RNA | lncrna |
| -186207 | enst00000524138 | sg00000104714 | erich1-211 | 8 | 673767 | 715927 | - | lnc_RNA | processed_transcript |
| 201633 | enst00000520524 | sg00000198010 | dlgap2-203 | 8 | 1104882 | 1262580 | + | lnc_RNA | processed_transcript |
| -215410 | enst00000518313 | sg00000104714 | erich1-203 | 8 | 673844 | 686724 | - | lnc_RNA | processed_transcript |
| -228477 | enst00000522893 | sg00000104714 | erich1-207 | 8 | 665992 | 673657 | - | mRNA | protein_coding |
| -228672 | enst00000518895 | sg00000104714 | erich1-204 | 8 | 671794 | 673462 | - | lnc_RNA | processed_transcript |
| -228808 | enst00000523415 | sg00000104714 | erich1-209 | 8 | 614749 | 673326 | - | mRNA | nonsense_mediated_decay |
| -232857 | enst00000523053 | sg00000104714 | erich1-208 | 8 | 664622 | 669277 | - | lnc_RNA | retained_intron |
| -260927 | enst00000523709 | sg00000104714 | erich1-210 | 8 | 637536 | 641207 | - | lnc_RNA | processed_transcript |
| -261502 | enst00000519909 | sg00000104714 | erich1-205 | 8 | 616526 | 640632 | - | lnc_RNA | processed_transcript |
| 345511 | enst00000517950 | sg00000254160 | ac110288.1-201 | 8 | 1246789 | 1248760 | - | lnc_RNA | lncrna |
| 347124 | enst00000522989 | sg00000198010 | dlgap2-209 | 8 | 1250373 | 1262580 | + | lnc_RNA | processed_transcript |
| 356330 | enst00000522626 | sg00000198010 | dlgap2-208 | 8 | 1259579 | 1262580 | + | lnc_RNA | retained_intron |
| -356353 | enst00000523656 | sg00000180190 | tdrp-203 | 8 | 489803 | 545781 | - | mRNA | protein_coding |
| -356353 | enst00000613071 | sg00000180190 | tdrp-205 | 8 | 489792 | 545781 | - | mRNA | protein_coding |
| -357136 | enst00000324079 | sg00000180190 | tdrp-201 | 8 | 489803 | 544998 | - | mRNA | protein_coding |
| -357289 | enst00000427263 | sg00000180190 | tdrp-202 | 8 | 489792 | 544845 | - | mRNA | protein_coding |
| 399358 | enst00000617093 | sg00000275427 | af067845.2-201 | 8 | 1296034 | 1302607 | - | lnc_RNA | lncrna |
| -407124 | enst00000524229 | sg00000180190 | tdrp-204 | 8 | 492630 | 495010 | - | lnc_RNA | processed_transcript |
| -413622 | enst00000623988 | sg00000279852 | ac083964.2-201 | 8 | 486117 | 488512 | - | unconfirmed_transcript | tec |
| -433419 | enst00000519274 | sg00000147364 | fbxo25-207 | 8 | 468715 | 471225 | + | mRNA | nonsense_mediated_decay |
| -443624 | enst00000517464 | sg00000147364 | fbxo25-205 | 8 | 458510 | 468180 | + | lnc_RNA | retained_intron |
| -443765 | enst00000519376 | sg00000147364 | fbxo25-208 | 8 | 458369 | 468014 | + | lnc_RNA | processed_transcript |
| -450791 | enst00000607549 | sg00000272293 | ac083964.1-201 | 8 | 450714 | 451343 | - | lnc_RNA | lncrna |
| 466584 | enst00000567210 | sg00000260721 | af067845.1-201 | 8 | 1368642 | 1369833 | - | lnc_RNA | lncrna |
| -466686 | enst00000524015 | sg00000147364 | fbxo25-209 | 8 | 435448 | 451380 | + | lnc_RNA | retained_intron |
| 470436 | enst00000633906 | sg00000282160 | af067845.5-201 | 8 | 1373685 | 1381394 | + | lnc_RNA | lncrna |
| 474618 | enst00000633198 | sg00000281961 | af067845.4-201 | 8 | 1377867 | 1380307 | + | lnc_RNA | lncrna |
| -481737 | enst00000524125 | sg00000147364 | fbxo25-210 | 8 | 420397 | 451320 | + | lnc_RNA | processed_transcript |
| -489062 | enst00000276326 | sg00000147364 | fbxo25-201 | 8 | 413072 | 469873 | + | mRNA | protein_coding |
| -495179 | enst00000382824 | sg00000147364 | fbxo25-204 | 8 | 406955 | 477967 | + | mRNA | protein_coding |
| -495326 | enst00000352684 | sg00000147364 | fbxo25-203 | 8 | 406808 | 469871 | + | mRNA | protein_coding |
| -495326 | enst00000350302 | sg00000147364 | fbxo25-202 | 8 | 406808 | 469690 | + | mRNA | protein_coding |
| -495706 | enst00000518240 | sg00000147364 | fbxo25-206 | 8 | 406428 | 435700 | + | mRNA | protein_coding |
Source file: /hps/research1/birney/users/adrien/analyses/cancer_DNA_promethion/run_1_2_3_4/DNA_pipeline_2/results/methylation/pycometh_meth_comp_CGI_3/out.tsv.gz
MD5 hash: 9aa0e3f69cb4e12345c3758eb68a5efc