CpG interval report generated on 20/05/20 with pycoMeth 0.4.6

Interval details
pvalue rank chromosome start end length number of samples number of CpGs pvalue adjusted pvalue
#135 20 40682660 40683906 1246 3 37 3.06953e-16 2.26122e-14
Methylation log-likelihood ratio by CpG position
Distribution of CpG methylation log-likelihood ratio by sample
Closest transcripts TSS
distance to tss transcript id gene id transcript name chromosome start end strand feature type transcript biotype
5330 enst00000373313 sg00000204103 mafb-201 20 40685848 40689236 - mRNA protein_coding
14710 enst00000428495 sg00000229771 al035665.1-201 20 40696499 40698616 - lnc_RNA lncrna
33351 enst00000655799 sg00000286972 al035665.2-201 20 40717257 40758636 + lnc_RNA lncrna
170323 enst00000458857 sg00000238908 rna5sp484-201 20 40854119 40854229 - pseudogenic_transcript rrna_pseudogene
340299 enst00000410680 sg00000222612 rnu2-52p-201 20 41024205 41024394 + snRNA snrna
344916 enst00000361337 sg00000198900 top1-201 20 41028822 41124487 + mRNA protein_coding
453054 enst00000244007 sg00000124181 plcg1-201 20 41136960 41175721 + mRNA protein_coding
453179 enst00000660264 sg00000226648 plcg1-as1-202 20 41130658 41137085 - lnc_RNA lncrna
453179 enst00000667669 sg00000226648 plcg1-as1-205 20 41129996 41137085 - lnc_RNA lncrna
453179 enst00000661983 sg00000226648 plcg1-as1-203 20 41098417 41137085 - lnc_RNA lncrna
453179 enst00000669288 sg00000226648 plcg1-as1-206 20 41098019 41137085 - lnc_RNA lncrna
453331 enst00000373271 sg00000124181 plcg1-202 20 41137237 41177626 + mRNA protein_coding
453644 enst00000490253 sg00000124181 plcg1-211 20 41137550 41159823 + lnc_RNA retained_intron
453826 enst00000483646 sg00000124181 plcg1-210 20 41137732 41162647 + lnc_RNA processed_transcript
454076 enst00000662554 sg00000226648 plcg1-as1-204 20 41109501 41137982 - lnc_RNA lncrna
454097 enst00000454626 sg00000226648 plcg1-as1-201 20 41098329 41138003 - lnc_RNA lncrna
479056 enst00000492148 sg00000124181 plcg1-212 20 41162962 41163982 + lnc_RNA retained_intron
479268 enst00000470528 sg00000124181 plcg1-206 20 41163174 41164005 + lnc_RNA retained_intron
481374 enst00000473632 sg00000124181 plcg1-207 20 41165280 41165860 + lnc_RNA retained_intron
481901 enst00000465571 sg00000124181 plcg1-205 20 41165807 41166880 + lnc_RNA retained_intron
482822 enst00000617873 sg00000124181 plcg1-220 20 41166728 41169628 + lnc_RNA processed_transcript
483751 enst00000477870 sg00000124181 plcg1-208 20 41167657 41170618 + lnc_RNA retained_intron
484010 enst00000483175 sg00000124181 plcg1-209 20 41167916 41170910 + lnc_RNA retained_intron
484893 enst00000619272 sg00000124181 plcg1-221 20 41168799 41170251 + lnc_RNA processed_transcript
484935 enst00000612731 sg00000124181 plcg1-219 20 41168841 41176281 + mRNA protein_coding
485117 enst00000613433 sg00000276169 mir6871-201 20 41169023 41169078 + miRNA mirna
486283 enst00000599785 sg00000124181 plcg1-213 20 41170189 41182989 + mRNA nonsense_mediated_decay
488505 enst00000461641 sg00000124181 plcg1-204 20 41172411 41174312 + lnc_RNA retained_intron
488533 enst00000608689 sg00000124181 plcg1-215 20 41172439 41182989 + lnc_RNA processed_transcript
488610 enst00000608885 sg00000124181 plcg1-216 20 41172516 41182989 + mRNA nonsense_mediated_decay
489601 enst00000609821 sg00000124181 plcg1-218 20 41173507 41182960 + lnc_RNA processed_transcript
489825 enst00000609257 sg00000124181 plcg1-217 20 41173731 41182960 + mRNA nonsense_mediated_decay
489898 enst00000607954 sg00000124181 plcg1-214 20 41173804 41182989 + mRNA nonsense_mediated_decay
496550 enst00000423733 sg00000124181 plcg1-203 20 41180456 41196787 + lnc_RNA processed_transcript
496629 enst00000630423 sg00000124181 plcg1-222 20 41180535 41196801 + lnc_RNA processed_transcript

Source file: /hps/research1/birney/users/adrien/analyses/cancer_DNA_promethion/run_1_2_3_4/DNA_pipeline_2/results/methylation/pycometh_meth_comp_CGI_3/out.tsv.gz

MD5 hash: 9aa0e3f69cb4e12345c3758eb68a5efc