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CpG interval report generated on 20/05/20 with pycoMeth 0.4.6
Interval details
| pvalue rank | chromosome | start | end | length | number of samples | number of CpGs | pvalue | adjusted pvalue |
|---|---|---|---|---|---|---|---|---|
| #132 | 12 | 54018428 | 54019691 | 1263 | 3 | 37 | 2.65561e-16 | 2.00011e-14 |
Methylation log-likelihood ratio by CpG position
Distribution of CpG methylation log-likelihood ratio by sample
Closest transcripts TSS
| distance to tss | transcript id | gene id | transcript name | chromosome | start | end | strand | feature type | transcript biotype |
|---|---|---|---|---|---|---|---|---|---|
| 219 | enst00000562848 | sg00000260597 | ac012531.1-201 | 12 | 54019910 | 54022589 | + | lnc_RNA | lncrna |
| -1318 | enst00000512206 | sg00000273046 | ac012531.2-201 | 12 | 54017110 | 54035361 | + | lnc_RNA | lncrna |
| -1497 | enst00000303406 | sg00000198353 | hoxc4-201 | 12 | 54016931 | 54055327 | + | mRNA | protein_coding |
| -2531 | enst00000394331 | sg00000197757 | hoxc6-202 | 12 | 54015897 | 54030733 | + | mRNA | protein_coding |
| 8749 | enst00000243108 | sg00000197757 | hoxc6-201 | 12 | 54028440 | 54030823 | + | mRNA | protein_coding |
| -9443 | enst00000040584 | sg00000037965 | hoxc8-201 | 12 | 54008985 | 54012769 | + | mRNA | protein_coding |
| 13162 | enst00000312492 | sg00000172789 | hoxc5-201 | 12 | 54032853 | 54035358 | + | mRNA | protein_coding |
| 14259 | enst00000384839 | sg00000207571 | mir615-201 | 12 | 54033950 | 54034045 | + | miRNA | mirna |
| 18163 | enst00000507650 | sg00000198353 | hoxc4-203 | 12 | 54037854 | 54053424 | + | lnc_RNA | processed_transcript |
| -18267 | enst00000303450 | sg00000180806 | hoxc9-201 | 12 | 54000161 | 54003337 | + | mRNA | protein_coding |
| -18418 | enst00000505700 | sg00000250451 | hoxc-as1-201 | 12 | 53999022 | 54000010 | - | lnc_RNA | lncrna |
| -18808 | enst00000512427 | sg00000250451 | hoxc-as1-202 | 12 | 53999022 | 53999620 | - | lnc_RNA | lncrna |
| -21643 | enst00000513533 | sg00000250133 | hoxc-as2-201 | 12 | 53995208 | 53996785 | - | lnc_RNA | lncrna |
| -22529 | enst00000604081 | sg00000250133 | hoxc-as2-202 | 12 | 53993810 | 53995899 | - | lnc_RNA | retained_intron |
| -22919 | enst00000508190 | sg00000180806 | hoxc9-203 | 12 | 53995509 | 54003298 | + | mRNA | protein_coding |
| -23484 | enst00000509328 | sg00000197757 | hoxc6-204 | 12 | 53994944 | 54029689 | + | mRNA | protein_coding |
| -23533 | enst00000504557 | sg00000180806 | hoxc9-202 | 12 | 53994895 | 54002888 | + | lnc_RNA | processed_transcript |
| -26690 | enst00000385189 | sg00000207924 | mir196a2-201 | 12 | 53991738 | 53991847 | + | miRNA | mirna |
| -27804 | enst00000504315 | sg00000197757 | hoxc6-203 | 12 | 53990624 | 54028922 | + | mRNA | protein_coding |
| -31998 | enst00000513413 | sg00000180818 | hoxc10-203 | 12 | 53986430 | 53989710 | + | lnc_RNA | processed_transcript |
| -32090 | enst00000514415 | sg00000180818 | hoxc10-204 | 12 | 53986338 | 53989675 | + | lnc_RNA | processed_transcript |
| -32296 | enst00000511575 | sg00000180818 | hoxc10-202 | 12 | 53986132 | 53989993 | + | lnc_RNA | processed_transcript |
| -32583 | enst00000513209 | sg00000273049 | ac012531.3-201 | 12 | 53985845 | 54034888 | + | mRNA | protein_coding |
| -32909 | enst00000514702 | sg00000251151 | hoxc-as3-203 | 12 | 53983951 | 53985519 | - | lnc_RNA | lncrna |
| -33282 | enst00000303460 | sg00000180818 | hoxc10-201 | 12 | 53985146 | 53990279 | + | mRNA | protein_coding |
| -33363 | enst00000515593 | sg00000180818 | hoxc10-205 | 12 | 53985065 | 53985977 | + | mRNA | protein_coding |
| -33590 | enst00000509870 | sg00000251151 | hoxc-as3-201 | 12 | 53983450 | 53984838 | - | lnc_RNA | lncrna |
| -33670 | enst00000513165 | sg00000251151 | hoxc-as3-202 | 12 | 53983671 | 53984758 | - | lnc_RNA | lncrna |
| -34104 | enst00000567780 | sg00000251151 | hoxc-as3-204 | 12 | 53981509 | 53984324 | - | lnc_RNA | retained_intron |
| 34144 | enst00000430889 | sg00000198353 | hoxc4-202 | 12 | 54053835 | 54056030 | + | mRNA | protein_coding |
| 38563 | enst00000515617 | sg00000248265 | ac023794.2-201 | 12 | 54058254 | 54122234 | + | lnc_RNA | lncrna |
| -43472 | enst00000424518 | sg00000228630 | hotair-201 | 12 | 53962308 | 53974956 | - | lnc_RNA | lncrna |
| -43481 | enst00000455246 | sg00000228630 | hotair-205 | 12 | 53963749 | 53974947 | - | lnc_RNA | lncrna |
| -45300 | enst00000243082 | sg00000123388 | hoxc11-201 | 12 | 53973128 | 53976419 | + | mRNA | protein_coding |
| -45302 | enst00000546378 | sg00000123388 | hoxc11-202 | 12 | 53973126 | 53977643 | + | mRNA | protein_coding |
| -49514 | enst00000439545 | sg00000228630 | hotair-203 | 12 | 53964085 | 53968914 | - | lnc_RNA | lncrna |
| -50077 | enst00000611375 | sg00000277129 | ac012531.6-201 | 12 | 53968351 | 53968501 | + | ncRNA | misc_rna |
| -50426 | enst00000616509 | sg00000274817 | ac012531.4-201 | 12 | 53968002 | 53968178 | + | ncRNA | misc_rna |
| -51073 | enst00000453875 | sg00000228630 | hotair-204 | 12 | 53963901 | 53967355 | - | lnc_RNA | lncrna |
| -51798 | enst00000425595 | sg00000228630 | hotair-202 | 12 | 53963802 | 53966630 | - | lnc_RNA | lncrna |
| -52463 | enst00000611352 | sg00000277994 | ac012531.7-201 | 12 | 53965965 | 53966061 | + | ncRNA | misc_rna |
| -54799 | enst00000611210 | sg00000275589 | ac012531.5-201 | 12 | 53963629 | 53963697 | + | ncRNA | misc_rna |
| 60597 | enst00000510754 | sg00000250654 | ac023794.5-204 | 12 | 54079267 | 54080288 | - | pseudogenic_transcript | transcribed_unprocessed_pseudogene |
| 60742 | enst00000607809 | sg00000250654 | ac023794.5-202 | 12 | 54078923 | 54080433 | - | lnc_RNA | processed_transcript |
| 62045 | enst00000659052 | sg00000249388 | ac023794.4-207 | 12 | 54081736 | 54102699 | + | lnc_RNA | lncrna |
| 62132 | enst00000505259 | sg00000250654 | ac023794.5-203 | 12 | 54078923 | 54081823 | - | lnc_RNA | processed_transcript |
| 62212 | enst00000514503 | sg00000250654 | ac023794.5-201 | 12 | 54076838 | 54081903 | - | lnc_RNA | processed_transcript |
| 62427 | enst00000504891 | sg00000249388 | ac023794.4-201 | 12 | 54082118 | 54102693 | + | lnc_RNA | lncrna |
| 63007 | enst00000666027 | sg00000249388 | ac023794.4-203 | 12 | 54082698 | 54102699 | + | lnc_RNA | lncrna |
| 63029 | enst00000650963 | sg00000249388 | ac023794.4-202 | 12 | 54082720 | 54102699 | + | lnc_RNA | lncrna |
| 63050 | enst00000669366 | sg00000249388 | ac023794.4-208 | 12 | 54082741 | 54102699 | + | lnc_RNA | lncrna |
| 63054 | enst00000652824 | sg00000249388 | ac023794.4-204 | 12 | 54082745 | 54102699 | + | lnc_RNA | lncrna |
| 63066 | enst00000656116 | sg00000249388 | ac023794.4-205 | 12 | 54082757 | 54102699 | + | lnc_RNA | lncrna |
| 63263 | enst00000659851 | sg00000249388 | ac023794.4-206 | 12 | 54082954 | 54102699 | + | lnc_RNA | lncrna |
| -63525 | enst00000243103 | sg00000123407 | hoxc12-201 | 12 | 53954903 | 53958956 | + | mRNA | protein_coding |
| -78785 | enst00000512916 | sg00000249641 | hoxc13-as-201 | 12 | 53935328 | 53939643 | - | lnc_RNA | lncrna |
| -79597 | enst00000243056 | sg00000123364 | hoxc13-201 | 12 | 53938831 | 53946544 | + | mRNA | protein_coding |
| 79611 | enst00000365276 | sg00000202146 | ac023794.1-201 | 12 | 54099191 | 54099302 | - | ncRNA | misc_rna |
| 87196 | enst00000651657 | sg00000248265 | ac023794.2-202 | 12 | 54106887 | 54122235 | + | lnc_RNA | lncrna |
| 106139 | enst00000513381 | sg00000250432 | fam242c-204 | 12 | 54085132 | 54125830 | - | lnc_RNA | lncrna |
| 106200 | enst00000508763 | sg00000250432 | fam242c-203 | 12 | 54114013 | 54125891 | - | lnc_RNA | lncrna |
| 106203 | enst00000504278 | sg00000250432 | fam242c-201 | 12 | 54121276 | 54125894 | - | lnc_RNA | lncrna |
| 106301 | enst00000505661 | sg00000250432 | fam242c-202 | 12 | 54121279 | 54125992 | - | lnc_RNA | lncrna |
| 106391 | enst00000660808 | sg00000250742 | linc02381-205 | 12 | 54126082 | 54132857 | + | lnc_RNA | lncrna |
| 106407 | enst00000508564 | sg00000250742 | linc02381-201 | 12 | 54126098 | 54132843 | + | lnc_RNA | lncrna |
| 106500 | enst00000652305 | sg00000250742 | linc02381-204 | 12 | 54126191 | 54147483 | + | lnc_RNA | lncrna |
| 106522 | enst00000635070 | sg00000250742 | linc02381-203 | 12 | 54126213 | 54142493 | + | lnc_RNA | lncrna |
| 122900 | enst00000634796 | sg00000250742 | linc02381-202 | 12 | 54142591 | 54147485 | + | lnc_RNA | lncrna |
| 127534 | enst00000564380 | sg00000260470 | ac023794.7-201 | 12 | 54145069 | 54147225 | - | lnc_RNA | lncrna |
| 143448 | enst00000504210 | sg00000248576 | ac023794.3-201 | 12 | 54163139 | 54168595 | + | lnc_RNA | lncrna |
| 144761 | enst00000551732 | sg00000257534 | ac023794.6-201 | 12 | 54162065 | 54164452 | - | lnc_RNA | lncrna |
| 153538 | enst00000634429 | sg00000123415 | smug1-223 | 12 | 54121277 | 54173229 | - | lnc_RNA | processed_transcript |
| 163068 | enst00000511854 | sg00000123415 | smug1-219 | 12 | 54181453 | 54182759 | - | lnc_RNA | retained_intron |
| 164242 | enst00000509864 | sg00000123415 | smug1-217 | 12 | 54164745 | 54183933 | - | mRNA | nonsense_mediated_decay |
| 164605 | enst00000509078 | sg00000123415 | smug1-216 | 12 | 54182558 | 54184296 | - | lnc_RNA | retained_intron |
| 168215 | enst00000505662 | sg00000123415 | smug1-211 | 12 | 54181485 | 54187906 | - | lnc_RNA | processed_transcript |
| 168916 | enst00000506595 | sg00000123415 | smug1-213 | 12 | 54181453 | 54188607 | - | mRNA | protein_coding |
| 168931 | enst00000401977 | sg00000123415 | smug1-203 | 12 | 54181954 | 54188622 | - | mRNA | protein_coding |
| 169180 | enst00000504338 | sg00000123415 | smug1-207 | 12 | 54182392 | 54188871 | - | mRNA | protein_coding |
| 169249 | enst00000514685 | sg00000123415 | smug1-222 | 12 | 54181453 | 54188940 | - | mRNA | protein_coding |
| 169255 | enst00000504797 | sg00000123415 | smug1-208 | 12 | 54183654 | 54188946 | - | mRNA | protein_coding |
| 169266 | enst00000513838 | sg00000123415 | smug1-220 | 12 | 54180358 | 54188957 | - | mRNA | protein_coding |
| 169266 | enst00000503231 | sg00000123415 | smug1-204 | 12 | 54187214 | 54188957 | - | lnc_RNA | processed_transcript |
| 169266 | enst00000505597 | sg00000123415 | smug1-210 | 12 | 54186983 | 54188957 | - | lnc_RNA | processed_transcript |
| 169281 | enst00000505128 | sg00000123415 | smug1-209 | 12 | 54181457 | 54188972 | - | mRNA | protein_coding |
| 169283 | enst00000337581 | sg00000123415 | smug1-202 | 12 | 54181468 | 54188974 | - | mRNA | protein_coding |
| 169283 | enst00000503306 | sg00000123415 | smug1-205 | 12 | 54183695 | 54188974 | - | mRNA | protein_coding |
| 169285 | enst00000243112 | sg00000123415 | smug1-201 | 12 | 54181471 | 54188976 | - | mRNA | protein_coding |
| 169289 | enst00000514196 | sg00000123415 | smug1-221 | 12 | 54182072 | 54188980 | - | mRNA | protein_coding |
| 169292 | enst00000635234 | sg00000123415 | smug1-224 | 12 | 54121277 | 54188983 | - | lnc_RNA | processed_transcript |
| 169294 | enst00000511522 | sg00000123415 | smug1-218 | 12 | 54182098 | 54188985 | - | lnc_RNA | retained_intron |
| 169294 | enst00000506169 | sg00000123415 | smug1-212 | 12 | 54183670 | 54188985 | - | mRNA | protein_coding |
| 169299 | enst00000507904 | sg00000123415 | smug1-214 | 12 | 54182585 | 54188990 | - | mRNA | protein_coding |
| 169301 | enst00000503447 | sg00000123415 | smug1-206 | 12 | 54183417 | 54188992 | - | lnc_RNA | retained_intron |
| 169303 | enst00000508394 | sg00000123415 | smug1-215 | 12 | 54181275 | 54188994 | - | mRNA | protein_coding |
| 169317 | enst00000635546 | sg00000123415 | smug1-225 | 12 | 54121279 | 54189008 | - | mRNA | nonsense_mediated_decay |
| -202243 | enst00000517244 | sg00000253053 | rn7skp289-201 | 12 | 53816185 | 53816479 | + | ncRNA | misc_rna |
| 211785 | enst00000577868 | sg00000283803 | mir3198-2-201 | 12 | 54231397 | 54231476 | - | miRNA | mirna |
| 232834 | enst00000547872 | sg00000094916 | cbx5-203 | 12 | 54241747 | 54252525 | - | lnc_RNA | retained_intron |
| 236219 | enst00000470634 | sg00000241785 | rn7sl390p-201 | 12 | 54255627 | 54255910 | - | ncRNA | misc_rna |
| 238736 | enst00000552562 | sg00000094916 | cbx5-205 | 12 | 54252091 | 54258427 | - | mRNA | protein_coding |
| 239854 | enst00000550411 | sg00000094916 | cbx5-204 | 12 | 54241755 | 54259545 | - | mRNA | protein_coding |
| 239901 | enst00000439541 | sg00000094916 | cbx5-202 | 12 | 54240625 | 54259592 | - | mRNA | protein_coding |
| 242924 | enst00000547177 | sg00000257596 | scat2-201 | 12 | 54262615 | 54279063 | + | lnc_RNA | lncrna |
| 256940 | enst00000553061 | sg00000258344 | ac078778.1-201 | 12 | 54276631 | 54345083 | + | lnc_RNA | lncrna |
| 260431 | enst00000209875 | sg00000094916 | cbx5-201 | 12 | 54230942 | 54280122 | - | mRNA | protein_coding |
| 260442 | enst00000618078 | sg00000094916 | cbx5-206 | 12 | 54271841 | 54280133 | - | lnc_RNA | processed_transcript |
| 260502 | enst00000546500 | sg00000135486 | hnrnpa1-203 | 12 | 54280193 | 54287087 | + | mRNA | protein_coding |
| 261057 | enst00000547566 | sg00000135486 | hnrnpa1-205 | 12 | 54280748 | 54287088 | + | mRNA | nonsense_mediated_decay |
| 261057 | enst00000547708 | sg00000135486 | hnrnpa1-206 | 12 | 54280748 | 54283878 | + | mRNA | protein_coding |
| 261058 | enst00000547870 | sg00000135486 | hnrnpa1-207 | 12 | 54280749 | 54282472 | + | lnc_RNA | retained_intron |
| 261064 | enst00000340913 | sg00000135486 | hnrnpa1-202 | 12 | 54280755 | 54285214 | + | mRNA | protein_coding |
| 261072 | enst00000551702 | sg00000135486 | hnrnpa1-213 | 12 | 54280763 | 54282486 | + | mRNA | protein_coding |
| 261084 | enst00000330752 | sg00000135486 | hnrnpa1-201 | 12 | 54280775 | 54284881 | + | mRNA | protein_coding |
| 261089 | enst00000547276 | sg00000135486 | hnrnpa1-204 | 12 | 54280780 | 54285251 | + | mRNA | protein_coding |
| -261201 | enst00000669269 | sg00000260492 | cistr-204 | 12 | 53746346 | 53757227 | - | lnc_RNA | lncrna |
| 261315 | enst00000548688 | sg00000135486 | hnrnpa1-208 | 12 | 54281006 | 54282626 | + | mRNA | protein_coding |
| -261394 | enst00000626733 | sg00000260492 | cistr-202 | 12 | 53750839 | 53757034 | - | lnc_RNA | lncrna |
| 261495 | enst00000550994 | sg00000135486 | hnrnpa1-210 | 12 | 54281186 | 54282284 | + | mRNA | protein_coding |
| -262380 | enst00000570015 | sg00000260492 | cistr-201 | 12 | 53750582 | 53756048 | - | lnc_RNA | lncrna |
| 262507 | enst00000550482 | sg00000135486 | hnrnpa1-209 | 12 | 54282198 | 54284569 | + | mRNA | protein_coding |
| 264032 | enst00000551679 | sg00000135486 | hnrnpa1-212 | 12 | 54283723 | 54284371 | + | lnc_RNA | retained_intron |
| -264070 | enst00000566418 | sg00000260030 | ac076968.1-201 | 12 | 53754358 | 53762104 | + | lnc_RNA | lncrna |
| 266216 | enst00000551665 | sg00000135486 | hnrnpa1-211 | 12 | 54285907 | 54287051 | + | lnc_RNA | retained_intron |
| 266256 | enst00000551803 | sg00000135486 | hnrnpa1-214 | 12 | 54285947 | 54287087 | + | lnc_RNA | processed_transcript |
| -266426 | enst00000663667 | sg00000260492 | cistr-203 | 12 | 53746337 | 53752002 | - | lnc_RNA | lncrna |
| -267580 | enst00000656247 | sg00000286069 | ac076968.2-204 | 12 | 53750848 | 53898976 | + | lnc_RNA | lncrna |
| 276067 | enst00000540264 | sg00000123405 | nfe2-203 | 12 | 54292173 | 54295758 | - | mRNA | protein_coding |
| 276069 | enst00000312156 | sg00000123405 | nfe2-201 | 12 | 54292111 | 54295760 | - | mRNA | protein_coding |
| 278193 | enst00000553198 | sg00000123405 | nfe2-205 | 12 | 54292465 | 54297884 | - | mRNA | protein_coding |
| -278752 | enst00000652339 | sg00000286069 | ac076968.2-203 | 12 | 53739676 | 53898044 | + | lnc_RNA | lncrna |
| -278753 | enst00000654713 | sg00000286069 | ac076968.2-202 | 12 | 53739675 | 53897895 | + | lnc_RNA | lncrna |
| -278817 | enst00000663306 | sg00000286069 | ac076968.2-201 | 12 | 53739611 | 53898044 | + | lnc_RNA | lncrna |
| 281324 | enst00000553070 | sg00000123405 | nfe2-204 | 12 | 54292374 | 54301015 | - | mRNA | protein_coding |
| 281324 | enst00000435572 | sg00000123405 | nfe2-202 | 12 | 54292111 | 54301015 | - | mRNA | protein_coding |
| 281511 | enst00000552848 | sg00000111481 | copz1-216 | 12 | 54301202 | 54345475 | + | mRNA | protein_coding |
| 281529 | enst00000548076 | sg00000111481 | copz1-203 | 12 | 54301220 | 54343279 | + | lnc_RNA | processed_transcript |
| -290683 | enst00000262059 | sg00000012822 | calcoco1-201 | 12 | 53708517 | 53727745 | - | mRNA | protein_coding |
| -290822 | enst00000549784 | sg00000012822 | calcoco1-216 | 12 | 53723594 | 53727606 | - | mRNA | protein_coding |
| -290937 | enst00000548431 | sg00000012822 | calcoco1-211 | 12 | 53724404 | 53727491 | - | lnc_RNA | retained_intron |
| -290961 | enst00000547885 | sg00000012822 | calcoco1-206 | 12 | 53724044 | 53727467 | - | lnc_RNA | processed_transcript |
| -290971 | enst00000549349 | sg00000012822 | calcoco1-213 | 12 | 53723696 | 53727457 | - | mRNA | protein_coding |
| -290976 | enst00000548177 | sg00000012822 | calcoco1-209 | 12 | 53723640 | 53727452 | - | mRNA | protein_coding |
| -290976 | enst00000553154 | sg00000012822 | calcoco1-222 | 12 | 53723550 | 53727452 | - | lnc_RNA | retained_intron |
| -290976 | enst00000546619 | sg00000012822 | calcoco1-204 | 12 | 53722155 | 53727452 | - | mRNA | protein_coding |
| -290976 | enst00000551900 | sg00000012822 | calcoco1-219 | 12 | 53722140 | 53727452 | - | mRNA | protein_coding |
| -290976 | enst00000547988 | sg00000012822 | calcoco1-208 | 12 | 53719772 | 53727452 | - | lnc_RNA | retained_intron |
| -290976 | enst00000549935 | sg00000012822 | calcoco1-217 | 12 | 53713170 | 53727452 | - | lnc_RNA | retained_intron |
| -290976 | enst00000546774 | sg00000012822 | calcoco1-205 | 12 | 53724583 | 53727452 | - | lnc_RNA | retained_intron |
| -290976 | enst00000550804 | sg00000012822 | calcoco1-218 | 12 | 53708517 | 53727452 | - | mRNA | protein_coding |
| -290977 | enst00000549173 | sg00000012822 | calcoco1-212 | 12 | 53723621 | 53727451 | - | mRNA | protein_coding |
| -290989 | enst00000430117 | sg00000012822 | calcoco1-202 | 12 | 53711119 | 53727439 | - | mRNA | protein_coding |
| -291000 | enst00000548263 | sg00000012822 | calcoco1-210 | 12 | 53711159 | 53727428 | - | mRNA | protein_coding |
| -292088 | enst00000549688 | sg00000012822 | calcoco1-215 | 12 | 53723729 | 53726340 | - | mRNA | protein_coding |
| -292088 | enst00000552623 | sg00000012822 | calcoco1-221 | 12 | 53723683 | 53726340 | - | mRNA | protein_coding |
| -293161 | enst00000547949 | sg00000012822 | calcoco1-207 | 12 | 53722164 | 53725267 | - | lnc_RNA | processed_transcript |
| 298196 | enst00000384651 | sg00000207381 | rnu6-950p-201 | 12 | 54317781 | 54317887 | - | snRNA | snrna |
| -298650 | enst00000552282 | sg00000012822 | calcoco1-220 | 12 | 53715675 | 53719778 | - | lnc_RNA | retained_intron |
| -302079 | enst00000549613 | sg00000012822 | calcoco1-214 | 12 | 53714137 | 53716349 | - | lnc_RNA | retained_intron |
| -303799 | enst00000546443 | sg00000012822 | calcoco1-203 | 12 | 53711119 | 53714629 | - | mRNA | protein_coding |
| 305418 | enst00000553009 | sg00000111481 | copz1-217 | 12 | 54325109 | 54342630 | + | lnc_RNA | retained_intron |
| 305438 | enst00000549043 | sg00000111481 | copz1-206 | 12 | 54325129 | 54351102 | + | mRNA | protein_coding |
| 305440 | enst00000552218 | sg00000111481 | copz1-214 | 12 | 54325131 | 54350690 | + | mRNA | protein_coding |
| 305440 | enst00000551962 | sg00000111481 | copz1-213 | 12 | 54325131 | 54350590 | + | mRNA | nonsense_mediated_decay |
| 305440 | enst00000262061 | sg00000111481 | copz1-201 | 12 | 54325131 | 54351846 | + | mRNA | protein_coding |
| 305448 | enst00000550027 | sg00000111481 | copz1-208 | 12 | 54325139 | 54348132 | + | lnc_RNA | retained_intron |
| 305448 | enst00000550171 | sg00000111481 | copz1-209 | 12 | 54325139 | 54351082 | + | mRNA | nonsense_mediated_decay |
| 305448 | enst00000553231 | sg00000111481 | copz1-218 | 12 | 54325139 | 54350354 | + | mRNA | protein_coding |
| 305448 | enst00000551412 | sg00000111481 | copz1-211 | 12 | 54325139 | 54347972 | + | lnc_RNA | retained_intron |
| 305448 | enst00000455864 | sg00000111481 | copz1-202 | 12 | 54325139 | 54350913 | + | mRNA | protein_coding |
| 305448 | enst00000552362 | sg00000111481 | copz1-215 | 12 | 54325139 | 54350590 | + | mRNA | protein_coding |
| 305453 | enst00000549116 | sg00000111481 | copz1-207 | 12 | 54325144 | 54350879 | + | mRNA | protein_coding |
| 305460 | enst00000551779 | sg00000111481 | copz1-212 | 12 | 54325151 | 54350621 | + | mRNA | protein_coding |
| 305511 | enst00000548281 | sg00000111481 | copz1-204 | 12 | 54325202 | 54350578 | + | lnc_RNA | processed_transcript |
| 305893 | enst00000548753 | sg00000111481 | copz1-205 | 12 | 54325584 | 54350686 | + | mRNA | protein_coding |
| 317525 | enst00000362252 | sg00000199122 | mir148b-201 | 12 | 54337216 | 54337314 | + | miRNA | mirna |
| 320681 | enst00000550713 | sg00000111481 | copz1-210 | 12 | 54340372 | 54347840 | + | mRNA | protein_coding |
| 324919 | enst00000577604 | sg00000264028 | rn7sl744p-201 | 12 | 54344610 | 54344876 | + | ncRNA | misc_rna |
| 333970 | enst00000550474 | sg00000258137 | ac079313.2-201 | 12 | 54353661 | 54497688 | + | lnc_RNA | lncrna |
| 334101 | enst00000552785 | sg00000258086 | ac079313.1-201 | 12 | 54353792 | 54466985 | + | lnc_RNA | lncrna |
| -341020 | enst00000552242 | sg00000135390 | atp5mc2-208 | 12 | 53665171 | 53677408 | - | mRNA | protein_coding |
| -341030 | enst00000338662 | sg00000135390 | atp5mc2-201 | 12 | 53665202 | 53677398 | - | mRNA | protein_coding |
| -341700 | enst00000673498 | sg00000135390 | atp5mc2-209 | 12 | 53665161 | 53676728 | - | mRNA | protein_coding |
| -342030 | enst00000549164 | sg00000135390 | atp5mc2-204 | 12 | 53665183 | 53676398 | - | mRNA | protein_coding |
| -342103 | enst00000394349 | sg00000135390 | atp5mc2-202 | 12 | 53665166 | 53676325 | - | mRNA | protein_coding |
| -342346 | enst00000549748 | sg00000135390 | atp5mc2-205 | 12 | 53665239 | 53676082 | - | mRNA | protein_coding |
| -344407 | enst00000495596 | sg00000135390 | atp5mc2-203 | 12 | 53665171 | 53674021 | - | lnc_RNA | retained_intron |
| 344795 | enst00000267015 | sg00000139572 | gpr84-201 | 12 | 54362445 | 54364486 | - | mRNA | protein_coding |
| 344796 | enst00000551809 | sg00000139572 | gpr84-202 | 12 | 54362447 | 54364487 | - | mRNA | protein_coding |
| -348167 | enst00000552120 | sg00000135390 | atp5mc2-207 | 12 | 53669222 | 53670261 | - | lnc_RNA | retained_intron |
| -349216 | enst00000550241 | sg00000135390 | atp5mc2-206 | 12 | 53632726 | 53669212 | - | lnc_RNA | processed_transcript |
| 359498 | enst00000552382 | sg00000161642 | znf385a-215 | 12 | 54369878 | 54379189 | - | lnc_RNA | processed_transcript |
| 361756 | enst00000551864 | sg00000161642 | znf385a-214 | 12 | 54372914 | 54381447 | - | lnc_RNA | processed_transcript |
| 364769 | enst00000549937 | sg00000161642 | znf385a-207 | 12 | 54371024 | 54384460 | - | mRNA | protein_coding |
| 364778 | enst00000550779 | sg00000161642 | znf385a-211 | 12 | 54369140 | 54384469 | - | mRNA | nonsense_mediated_decay |
| 364982 | enst00000551771 | sg00000161642 | znf385a-213 | 12 | 54370162 | 54384673 | - | mRNA | protein_coding |
| 365018 | enst00000550120 | sg00000161642 | znf385a-209 | 12 | 54371684 | 54384709 | - | mRNA | protein_coding |
| 365032 | enst00000547210 | sg00000161642 | znf385a-206 | 12 | 54371583 | 54384723 | - | mRNA | protein_coding |
| 365032 | enst00000394313 | sg00000161642 | znf385a-203 | 12 | 54369136 | 54384723 | - | mRNA | protein_coding |
| 365573 | enst00000546919 | sg00000161642 | znf385a-204 | 12 | 54371006 | 54385264 | - | mRNA | protein_coding |
| 366076 | enst00000551109 | sg00000161642 | znf385a-212 | 12 | 54369133 | 54385767 | - | mRNA | protein_coding |
| 366077 | enst00000546970 | sg00000161642 | znf385a-205 | 12 | 54369153 | 54385768 | - | mRNA | protein_coding |
| 371590 | enst00000352268 | sg00000161642 | znf385a-202 | 12 | 54369135 | 54391281 | - | mRNA | protein_coding |
| 371590 | enst00000549962 | sg00000161642 | znf385a-208 | 12 | 54371491 | 54391281 | - | mRNA | protein_coding |
| 371607 | enst00000550774 | sg00000161642 | znf385a-210 | 12 | 54371642 | 54391298 | - | mRNA | protein_coding |
| 371607 | enst00000338010 | sg00000161642 | znf385a-201 | 12 | 54369140 | 54391298 | - | mRNA | protein_coding |
| 379132 | enst00000549601 | sg00000161638 | itga5-205 | 12 | 54396222 | 54398823 | - | lnc_RNA | retained_intron |
| 380222 | enst00000552431 | sg00000161638 | itga5-210 | 12 | 54397271 | 54399913 | - | lnc_RNA | retained_intron |
| 380222 | enst00000547197 | sg00000161638 | itga5-203 | 12 | 54395895 | 54399913 | - | mRNA | protein_coding |
| 381167 | enst00000552387 | sg00000161638 | itga5-209 | 12 | 54397366 | 54400858 | - | lnc_RNA | retained_intron |
| 382581 | enst00000552583 | sg00000161638 | itga5-212 | 12 | 54401560 | 54402272 | - | lnc_RNA | retained_intron |
| 383481 | enst00000551564 | sg00000161638 | itga5-207 | 12 | 54402081 | 54403172 | - | lnc_RNA | retained_intron |
| 384653 | enst00000550141 | sg00000161638 | itga5-206 | 12 | 54403632 | 54404344 | - | lnc_RNA | retained_intron |
| 384938 | enst00000551861 | sg00000161638 | itga5-208 | 12 | 54403916 | 54404629 | - | lnc_RNA | retained_intron |
| -385277 | enst00000462065 | sg00000213470 | ac073594.1-201 | 12 | 53632788 | 53633151 | - | pseudogenic_transcript | processed_pseudogene |
| 386425 | enst00000552564 | sg00000161638 | itga5-211 | 12 | 54395261 | 54406116 | - | lnc_RNA | retained_intron |
| -392018 | enst00000591397 | sg00000170653 | atf7-212 | 12 | 53542887 | 53626410 | - | mRNA | protein_coding |
| -392041 | enst00000589726 | sg00000170653 | atf7-211 | 12 | 53600752 | 53626387 | - | lnc_RNA | retained_intron |
| -392046 | enst00000420353 | sg00000170653 | atf7-201 | 12 | 53512054 | 53626382 | - | mRNA | protein_coding |
| -392058 | enst00000548446 | sg00000170653 | atf7-205 | 12 | 53507856 | 53626370 | - | mRNA | protein_coding |
| -392065 | enst00000588232 | sg00000170653 | atf7-210 | 12 | 53534540 | 53626363 | - | mRNA | protein_coding |
| -392428 | enst00000456903 | sg00000170653 | atf7-202 | 12 | 53513442 | 53626000 | - | mRNA | protein_coding |
| -392432 | enst00000548118 | sg00000170653 | atf7-204 | 12 | 53542887 | 53625996 | - | mRNA | protein_coding |
| -392449 | enst00000591834 | sg00000267281 | atf7-npff-202 | 12 | 53506691 | 53625979 | - | mRNA | protein_coding |
| -392449 | enst00000551480 | sg00000170653 | atf7-208 | 12 | 53534542 | 53625979 | - | mRNA | protein_coding |
| -392457 | enst00000588078 | sg00000170653 | atf7-209 | 12 | 53534606 | 53625971 | - | mRNA | protein_coding |
| 393737 | enst00000547744 | sg00000161638 | itga5-204 | 12 | 54411908 | 54413428 | - | lnc_RNA | processed_transcript |
| 399436 | enst00000553071 | sg00000161638 | itga5-213 | 12 | 54405194 | 54419127 | - | mRNA | nonsense_mediated_decay |
| 399529 | enst00000435631 | sg00000161638 | itga5-202 | 12 | 54404771 | 54419220 | - | mRNA | nonsense_mediated_decay |
| 399575 | enst00000293379 | sg00000161638 | itga5-201 | 12 | 54395261 | 54419266 | - | mRNA | protein_coding |
| 400094 | enst00000552053 | sg00000258137 | ac079313.2-202 | 12 | 54419785 | 54437104 | + | lnc_RNA | lncrna |
| 408612 | enst00000548617 | sg00000257477 | linc01154-201 | 12 | 54428303 | 54429403 | + | lnc_RNA | lncrna |
| 439911 | enst00000552336 | sg00000170627 | gtsf1-207 | 12 | 54455961 | 54459602 | - | lnc_RNA | processed_transcript |
| 443642 | enst00000546575 | sg00000170627 | gtsf1-202 | 12 | 54456139 | 54463333 | - | lnc_RNA | retained_intron |
| -443796 | enst00000617434 | sg00000275488 | ac023509.5-201 | 12 | 53574632 | 53576103 | + | pseudogenic_transcript | processed_pseudogene |
| 449256 | enst00000548538 | sg00000170627 | gtsf1-205 | 12 | 54464697 | 54468947 | - | lnc_RNA | processed_transcript |
| 452936 | enst00000552397 | sg00000170627 | gtsf1-209 | 12 | 54455954 | 54472627 | - | mRNA | protein_coding |
| 452953 | enst00000549083 | sg00000170627 | gtsf1-206 | 12 | 54468925 | 54472644 | - | lnc_RNA | processed_transcript |
| 453858 | enst00000546931 | sg00000170627 | gtsf1-204 | 12 | 54455950 | 54473549 | - | mRNA | nonsense_mediated_decay |
| 453879 | enst00000552395 | sg00000170627 | gtsf1-208 | 12 | 54455960 | 54473570 | - | lnc_RNA | processed_transcript |
| 453911 | enst00000305879 | sg00000170627 | gtsf1-201 | 12 | 54455957 | 54473602 | - | mRNA | protein_coding |
| 453911 | enst00000546739 | sg00000170627 | gtsf1-203 | 12 | 54464703 | 54473602 | - | lnc_RNA | retained_intron |
| -474477 | enst00000550373 | sg00000170653 | atf7-206 | 12 | 53543091 | 53543951 | - | lnc_RNA | processed_transcript |
| 478061 | enst00000293373 | sg00000123338 | nckap1l-201 | 12 | 54497752 | 54548243 | + | mRNA | protein_coding |
| 478067 | enst00000548221 | sg00000123338 | nckap1l-204 | 12 | 54497758 | 54542773 | + | mRNA | nonsense_mediated_decay |
| 478075 | enst00000547500 | sg00000123338 | nckap1l-203 | 12 | 54497766 | 54500931 | + | lnc_RNA | retained_intron |
| 479093 | enst00000545638 | sg00000123338 | nckap1l-202 | 12 | 54498784 | 54542963 | + | mRNA | protein_coding |
| -486676 | enst00000648881 | sg00000285692 | ac023509.6-201 | 12 | 53531752 | 53621218 | + | lnc_RNA | lncrna |
| 490182 | enst00000552211 | sg00000123338 | nckap1l-208 | 12 | 54509873 | 54517538 | + | lnc_RNA | processed_transcript |
| 490244 | enst00000548916 | sg00000123338 | nckap1l-205 | 12 | 54509935 | 54512556 | + | lnc_RNA | retained_intron |
| -493452 | enst00000546661 | sg00000170653 | atf7-203 | 12 | 53516649 | 53524976 | - | lnc_RNA | processed_transcript |
| -495159 | enst00000551087 | sg00000170653 | atf7-207 | 12 | 53515781 | 53523269 | - | lnc_RNA | processed_transcript |
| 499146 | enst00000549451 | sg00000123338 | nckap1l-207 | 12 | 54518837 | 54520826 | + | lnc_RNA | retained_intron |
Source file: /hps/research1/birney/users/adrien/analyses/cancer_DNA_promethion/run_1_2_3_4/DNA_pipeline_2/results/methylation/pycometh_meth_comp_CGI_3/out.tsv.gz
MD5 hash: 9aa0e3f69cb4e12345c3758eb68a5efc