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CpG interval report generated on 20/05/20 with pycoMeth 0.4.6
Interval details
| pvalue rank | chromosome | start | end | length | number of samples | number of CpGs | pvalue | adjusted pvalue |
|---|---|---|---|---|---|---|---|---|
| #131 | 19 | 48442368 | 48444808 | 2440 | 3 | 68 | 2.50732e-16 | 1.90345e-14 |
Methylation log-likelihood ratio by CpG position
Distribution of CpG methylation log-likelihood ratio by sample
Closest transcripts TSS
| distance to tss | transcript id | gene id | transcript name | chromosome | start | end | strand | feature type | transcript biotype |
|---|---|---|---|---|---|---|---|---|---|
| 1033 | enst00000598711 | sg00000105447 | grwd1-202 | 19 | 48445841 | 48451202 | + | mRNA | protein_coding |
| 1175 | enst00000253237 | sg00000105447 | grwd1-201 | 19 | 48445983 | 48457022 | + | mRNA | protein_coding |
| 1184 | enst00000599949 | sg00000105447 | grwd1-203 | 19 | 48445992 | 48446687 | + | lnc_RNA | retained_intron |
| 10766 | enst00000342291 | sg00000182324 | kcnj14-201 | 19 | 48455574 | 48466980 | + | mRNA | protein_coding |
| 16441 | enst00000391884 | sg00000182324 | kcnj14-202 | 19 | 48461249 | 48466980 | + | mRNA | protein_coding |
| 21029 | enst00000595676 | sg00000268465 | ac008403.1-201 | 19 | 48465837 | 48472431 | + | mRNA | protein_coding |
| 22129 | enst00000600529 | sg00000268530 | ac008403.2-203 | 19 | 48465593 | 48466937 | - | lnc_RNA | lncrna |
| 22347 | enst00000660043 | sg00000268530 | ac008403.2-201 | 19 | 48465348 | 48467155 | - | lnc_RNA | lncrna |
| 24400 | enst00000427476 | sg00000105443 | cyth2-203 | 19 | 48469208 | 48482313 | + | mRNA | protein_coding |
| 24498 | enst00000460595 | sg00000105443 | cyth2-205 | 19 | 48469306 | 48474275 | + | mRNA | protein_coding |
| 24513 | enst00000391881 | sg00000105443 | cyth2-202 | 19 | 48469321 | 48479365 | + | mRNA | nonsense_mediated_decay |
| 24539 | enst00000493260 | sg00000105443 | cyth2-210 | 19 | 48469347 | 48479382 | + | lnc_RNA | retained_intron |
| 24543 | enst00000462117 | sg00000105443 | cyth2-206 | 19 | 48469351 | 48472540 | + | lnc_RNA | retained_intron |
| 24557 | enst00000474049 | sg00000105443 | cyth2-208 | 19 | 48469365 | 48472523 | + | lnc_RNA | retained_intron |
| 24561 | enst00000452733 | sg00000105443 | cyth2-204 | 19 | 48469369 | 48482314 | + | mRNA | protein_coding |
| 24625 | enst00000641098 | sg00000105443 | cyth2-214 | 19 | 48469433 | 48480653 | + | mRNA | protein_coding |
| 24671 | enst00000596497 | sg00000268530 | ac008403.2-202 | 19 | 48465467 | 48469479 | - | lnc_RNA | lncrna |
| 24699 | enst00000600650 | sg00000268530 | ac008403.2-205 | 19 | 48465663 | 48469507 | - | lnc_RNA | lncrna |
| 24826 | enst00000325139 | sg00000105443 | cyth2-201 | 19 | 48469634 | 48474330 | + | mRNA | protein_coding |
| 24885 | enst00000593476 | sg00000268530 | ac008403.2-204 | 19 | 48465611 | 48469693 | - | lnc_RNA | lncrna |
| 27544 | enst00000595765 | sg00000105443 | cyth2-211 | 19 | 48472352 | 48475148 | + | mRNA | protein_coding |
| 27913 | enst00000467412 | sg00000105443 | cyth2-207 | 19 | 48472721 | 48476276 | + | lnc_RNA | retained_intron |
| 27913 | enst00000474209 | sg00000105443 | cyth2-209 | 19 | 48472721 | 48474009 | + | lnc_RNA | retained_intron |
| 30292 | enst00000620214 | sg00000105443 | cyth2-213 | 19 | 48475100 | 48482313 | + | mRNA | protein_coding |
| 35118 | enst00000600597 | sg00000105443 | cyth2-212 | 19 | 48479926 | 48480879 | + | lnc_RNA | processed_transcript |
| -47493 | enst00000263269 | sg00000105464 | grin2d-201 | 19 | 48394875 | 48444931 | + | mRNA | protein_coding |
| -50817 | enst00000330720 | sg00000105438 | kdelr1-201 | 19 | 48382575 | 48391551 | - | mRNA | protein_coding |
| -50850 | enst00000599084 | sg00000105438 | kdelr1-204 | 19 | 48389482 | 48391518 | - | lnc_RNA | retained_intron |
| -50857 | enst00000600980 | sg00000105438 | kdelr1-205 | 19 | 48384239 | 48391511 | - | mRNA | protein_coding |
| -50866 | enst00000594643 | sg00000105438 | kdelr1-202 | 19 | 48390199 | 48391502 | - | lnc_RNA | retained_intron |
| -51513 | enst00000597017 | sg00000105438 | kdelr1-203 | 19 | 48382578 | 48390855 | - | mRNA | protein_coding |
| 53597 | enst00000648216 | sg00000142235 | lmtk3-205 | 19 | 48485271 | 48498405 | - | mRNA | protein_coding |
| 57029 | enst00000672160 | sg00000142235 | lmtk3-207 | 19 | 48485271 | 48501837 | - | mRNA | protein_coding |
| 66996 | enst00000600059 | sg00000142235 | lmtk3-203 | 19 | 48485271 | 48511804 | - | mRNA | protein_coding |
| 66996 | enst00000647709 | sg00000142235 | lmtk3-204 | 19 | 48501283 | 48511804 | - | mRNA | nonsense_mediated_decay |
| 68381 | enst00000270238 | sg00000142235 | lmtk3-201 | 19 | 48485271 | 48513189 | - | mRNA | protein_coding |
| 68381 | enst00000673139 | sg00000142235 | lmtk3-208 | 19 | 48485271 | 48513189 | - | mRNA | protein_coding |
| 68852 | enst00000598924 | sg00000142235 | lmtk3-202 | 19 | 48513207 | 48513660 | - | mRNA | protein_coding |
| 69127 | enst00000650440 | sg00000142235 | lmtk3-206 | 19 | 48485773 | 48513935 | - | mRNA | protein_coding |
| -69260 | enst00000595322 | sg00000105467 | syngr4-202 | 19 | 48373108 | 48376271 | + | mRNA | protein_coding |
| -69265 | enst00000601610 | sg00000105467 | syngr4-204 | 19 | 48373103 | 48376376 | + | mRNA | protein_coding |
| -69325 | enst00000600863 | sg00000105467 | syngr4-203 | 19 | 48373043 | 48375701 | + | mRNA | protein_coding |
| -78001 | enst00000344846 | sg00000105467 | syngr4-201 | 19 | 48364367 | 48376377 | + | mRNA | protein_coding |
| -78309 | enst00000435956 | sg00000161558 | tmem143-203 | 19 | 48332361 | 48364059 | - | mRNA | protein_coding |
| -78428 | enst00000293261 | sg00000161558 | tmem143-201 | 19 | 48332356 | 48363940 | - | mRNA | protein_coding |
| -78428 | enst00000595720 | sg00000161558 | tmem143-205 | 19 | 48342747 | 48363940 | - | lnc_RNA | retained_intron |
| -78428 | enst00000598258 | sg00000161558 | tmem143-208 | 19 | 48343345 | 48363940 | - | lnc_RNA | processed_transcript |
| -78430 | enst00000377431 | sg00000161558 | tmem143-202 | 19 | 48332357 | 48363938 | - | mRNA | protein_coding |
| -78430 | enst00000601332 | sg00000161558 | tmem143-212 | 19 | 48342877 | 48363938 | - | lnc_RNA | retained_intron |
| -78430 | enst00000593914 | sg00000161558 | tmem143-204 | 19 | 48359876 | 48363938 | - | lnc_RNA | retained_intron |
| -78430 | enst00000599220 | sg00000161558 | tmem143-210 | 19 | 48345269 | 48363938 | - | mRNA | nonsense_mediated_decay |
| -78430 | enst00000598012 | sg00000161558 | tmem143-207 | 19 | 48360287 | 48363938 | - | lnc_RNA | processed_transcript |
| -78447 | enst00000597370 | sg00000161558 | tmem143-206 | 19 | 48343414 | 48363921 | - | mRNA | nonsense_mediated_decay |
| -78692 | enst00000598926 | sg00000161558 | tmem143-209 | 19 | 48342798 | 48363676 | - | mRNA | protein_coding |
| -78694 | enst00000601522 | sg00000161558 | tmem143-213 | 19 | 48345273 | 48363674 | - | mRNA | protein_coding |
| -99377 | enst00000600816 | sg00000161558 | tmem143-211 | 19 | 48333276 | 48342991 | - | lnc_RNA | retained_intron |
| 107267 | enst00000201586 | sg00000088002 | sult2b1-201 | 19 | 48552075 | 48599425 | + | mRNA | protein_coding |
| -113098 | enst00000597057 | sg00000142227 | emp3-205 | 19 | 48329270 | 48330483 | + | lnc_RNA | retained_intron |
| -116760 | enst00000593437 | sg00000142227 | emp3-202 | 19 | 48325608 | 48330524 | + | mRNA | protein_coding |
| -116787 | enst00000597279 | sg00000142227 | emp3-206 | 19 | 48325581 | 48330553 | + | mRNA | protein_coding |
| -116807 | enst00000599255 | sg00000142227 | emp3-208 | 19 | 48325561 | 48330539 | + | mRNA | nonsense_mediated_decay |
| -116816 | enst00000270221 | sg00000142227 | emp3-201 | 19 | 48325552 | 48330553 | + | mRNA | protein_coding |
| -116821 | enst00000597529 | sg00000142227 | emp3-207 | 19 | 48325547 | 48327800 | + | lnc_RNA | retained_intron |
| -116824 | enst00000594198 | sg00000142227 | emp3-203 | 19 | 48325544 | 48330355 | + | mRNA | protein_coding |
| -117021 | enst00000596315 | sg00000142227 | emp3-204 | 19 | 48325347 | 48330553 | + | mRNA | protein_coding |
| -120474 | enst00000504608 | sg00000105479 | ccdc114-206 | 19 | 48306300 | 48321894 | - | lnc_RNA | processed_transcript |
| -120495 | enst00000497803 | sg00000105479 | ccdc114-205 | 19 | 48318465 | 48321873 | - | lnc_RNA | processed_transcript |
| -120859 | enst00000599704 | sg00000142227 | emp3-209 | 19 | 48321509 | 48329439 | + | mRNA | protein_coding |
| -121572 | enst00000483610 | sg00000105479 | ccdc114-203 | 19 | 48319860 | 48320796 | - | lnc_RNA | retained_intron |
| -121983 | enst00000474199 | sg00000105479 | ccdc114-202 | 19 | 48296462 | 48320385 | - | lnc_RNA | retained_intron |
| -122293 | enst00000315396 | sg00000105479 | ccdc114-201 | 19 | 48296457 | 48320075 | - | mRNA | protein_coding |
| 130732 | enst00000323090 | sg00000088002 | sult2b1-202 | 19 | 48575540 | 48599425 | + | mRNA | protein_coding |
| -138967 | enst00000497273 | sg00000105479 | ccdc114-204 | 19 | 48296464 | 48303401 | - | lnc_RNA | retained_intron |
| 146293 | enst00000594274 | sg00000088002 | sult2b1-203 | 19 | 48591101 | 48599274 | + | lnc_RNA | processed_transcript |
| 150978 | enst00000597923 | sg00000088002 | sult2b1-204 | 19 | 48595786 | 48599423 | + | lnc_RNA | retained_intron |
| 152430 | enst00000666424 | sg00000287603 | ac008403.3-201 | 19 | 48547637 | 48597238 | - | lnc_RNA | lncrna |
| -160206 | enst00000598898 | sg00000178150 | znf114-205 | 19 | 48282162 | 48285776 | + | lnc_RNA | retained_intron |
| 161934 | enst00000321762 | sg00000177202 | spaca4-201 | 19 | 48606742 | 48607714 | + | mRNA | protein_coding |
| 168754 | enst00000263266 | sg00000105523 | fam83e-201 | 19 | 48600810 | 48613562 | - | mRNA | protein_coding |
| 170007 | enst00000593772 | sg00000105523 | fam83e-202 | 19 | 48610791 | 48614815 | - | mRNA | protein_coding |
| 170033 | enst00000595110 | sg00000105523 | fam83e-203 | 19 | 48614172 | 48614841 | - | lnc_RNA | processed_transcript |
| 170046 | enst00000599126 | sg00000105523 | fam83e-204 | 19 | 48614195 | 48614854 | - | lnc_RNA | processed_transcript |
| -170745 | enst00000601320 | sg00000178150 | znf114-207 | 19 | 48271623 | 48282405 | + | mRNA | protein_coding |
| -170971 | enst00000315849 | sg00000178150 | znf114-201 | 19 | 48271397 | 48287606 | + | mRNA | protein_coding |
| -170986 | enst00000595408 | sg00000178150 | znf114-203 | 19 | 48271382 | 48285881 | + | mRNA | protein_coding |
| -170996 | enst00000594024 | sg00000178150 | znf114-202 | 19 | 48271372 | 48285828 | + | mRNA | protein_coding |
| -171085 | enst00000600941 | sg00000268186 | znf114-as1-201 | 19 | 48262900 | 48271283 | - | lnc_RNA | lncrna |
| -171312 | enst00000600687 | sg00000178150 | znf114-206 | 19 | 48271056 | 48287070 | + | mRNA | protein_coding |
| 171617 | enst00000549533 | sg00000063177 | rpl18-207 | 19 | 48615331 | 48616425 | - | lnc_RNA | retained_intron |
| -172287 | enst00000595607 | sg00000178150 | znf114-204 | 19 | 48270081 | 48287608 | + | mRNA | protein_coding |
| 172989 | enst00000546623 | sg00000063177 | rpl18-202 | 19 | 48615333 | 48617797 | - | mRNA | protein_coding |
| 173076 | enst00000084795 | sg00000063177 | rpl18-201 | 19 | 48615331 | 48617884 | - | mRNA | protein_coding |
| 174319 | enst00000550973 | sg00000063177 | rpl18-211 | 19 | 48615393 | 48619127 | - | mRNA | protein_coding |
| 174355 | enst00000552347 | sg00000063177 | rpl18-213 | 19 | 48615328 | 48619163 | - | lnc_RNA | retained_intron |
| 174355 | enst00000550645 | sg00000063177 | rpl18-209 | 19 | 48615331 | 48619163 | - | mRNA | protein_coding |
| 174356 | enst00000552851 | sg00000063177 | rpl18-216 | 19 | 48616266 | 48619164 | - | lnc_RNA | retained_intron |
| 174360 | enst00000547897 | sg00000063177 | rpl18-204 | 19 | 48615330 | 48619168 | - | mRNA | non_stop_decay |
| 174367 | enst00000547892 | sg00000063177 | rpl18-203 | 19 | 48615332 | 48619175 | - | lnc_RNA | retained_intron |
| 174368 | enst00000549370 | sg00000063177 | rpl18-206 | 19 | 48615336 | 48619176 | - | mRNA | nonsense_mediated_decay |
| 174369 | enst00000549273 | sg00000063177 | rpl18-205 | 19 | 48615366 | 48619177 | - | mRNA | protein_coding |
| 174370 | enst00000549920 | sg00000063177 | rpl18-208 | 19 | 48615331 | 48619178 | - | mRNA | protein_coding |
| 174373 | enst00000552588 | sg00000063177 | rpl18-214 | 19 | 48615331 | 48619181 | - | mRNA | protein_coding |
| 174375 | enst00000552705 | sg00000063177 | rpl18-215 | 19 | 48615982 | 48619183 | - | lnc_RNA | retained_intron |
| 174375 | enst00000551749 | sg00000063177 | rpl18-212 | 19 | 48615331 | 48619183 | - | lnc_RNA | retained_intron |
| 174376 | enst00000550671 | sg00000063177 | rpl18-210 | 19 | 48617158 | 48619184 | - | lnc_RNA | retained_intron |
| 174483 | enst00000340932 | sg00000063176 | sphk2-202 | 19 | 48619291 | 48630406 | + | mRNA | protein_coding |
| 174642 | enst00000601712 | sg00000063176 | sphk2-213 | 19 | 48619450 | 48628651 | + | mRNA | protein_coding |
| 174644 | enst00000600537 | sg00000063176 | sphk2-211 | 19 | 48619452 | 48629916 | + | mRNA | protein_coding |
| 174698 | enst00000245222 | sg00000063176 | sphk2-201 | 19 | 48619506 | 48630405 | + | mRNA | protein_coding |
| 174726 | enst00000598088 | sg00000063176 | sphk2-206 | 19 | 48619534 | 48630405 | + | mRNA | protein_coding |
| 175707 | enst00000426514 | sg00000063176 | sphk2-203 | 19 | 48620515 | 48629773 | + | mRNA | nonsense_mediated_decay |
| 178593 | enst00000598735 | sg00000268093 | ac022154.1-202 | 19 | 48619569 | 48623401 | - | lnc_RNA | lncrna |
| 179050 | enst00000600303 | sg00000268093 | ac022154.1-201 | 19 | 48619272 | 48623858 | - | lnc_RNA | lncrna |
| 179198 | enst00000597434 | sg00000063176 | sphk2-205 | 19 | 48624006 | 48630717 | + | mRNA | non_stop_decay |
| 179324 | enst00000594850 | sg00000268093 | ac022154.1-203 | 19 | 48620504 | 48624132 | - | lnc_RNA | lncrna |
| 179535 | enst00000601704 | sg00000063176 | sphk2-212 | 19 | 48624343 | 48626358 | + | mRNA | protein_coding |
| 179620 | enst00000593308 | sg00000063176 | sphk2-204 | 19 | 48624428 | 48626175 | + | mRNA | protein_coding |
| 179664 | enst00000599033 | sg00000063176 | sphk2-209 | 19 | 48624472 | 48626301 | + | lnc_RNA | processed_transcript |
| 180144 | enst00000599748 | sg00000063176 | sphk2-210 | 19 | 48624952 | 48630405 | + | mRNA | protein_coding |
| 180161 | enst00000599029 | sg00000063176 | sphk2-208 | 19 | 48624969 | 48630717 | + | mRNA | protein_coding |
| 180221 | enst00000598574 | sg00000063176 | sphk2-207 | 19 | 48625029 | 48626814 | + | lnc_RNA | retained_intron |
| -186422 | enst00000521613 | sg00000105483 | card8-221 | 19 | 48211566 | 48255946 | - | mRNA | protein_coding |
| -186456 | enst00000651546 | sg00000105483 | card8-231 | 19 | 48208086 | 48255912 | - | mRNA | protein_coding |
| -186457 | enst00000522068 | sg00000105483 | card8-223 | 19 | 48231729 | 48255911 | - | lnc_RNA | processed_transcript |
| -186470 | enst00000520007 | sg00000105483 | card8-214 | 19 | 48238336 | 48255898 | - | mRNA | protein_coding |
| -186470 | enst00000517510 | sg00000105483 | card8-204 | 19 | 48203632 | 48255898 | - | mRNA | nonsense_mediated_decay |
| -186471 | enst00000521437 | sg00000105483 | card8-220 | 19 | 48238475 | 48255897 | - | mRNA | protein_coding |
| -186475 | enst00000519332 | sg00000105483 | card8-211 | 19 | 48238334 | 48255893 | - | mRNA | protein_coding |
| -186482 | enst00000520753 | sg00000105483 | card8-217 | 19 | 48210487 | 48255886 | - | mRNA | protein_coding |
| -186495 | enst00000519940 | sg00000105483 | card8-213 | 19 | 48209668 | 48255873 | - | mRNA | protein_coding |
| -186497 | enst00000522889 | sg00000105483 | card8-226 | 19 | 48234472 | 48255871 | - | mRNA | protein_coding |
| -186693 | enst00000602172 | sg00000268001 | card8-as1-201 | 19 | 48255675 | 48258199 | + | lnc_RNA | lncrna |
| 189718 | enst00000593500 | sg00000105516 | dbp-202 | 19 | 48630731 | 48634526 | - | mRNA | protein_coding |
| 189828 | enst00000599385 | sg00000105516 | dbp-204 | 19 | 48630685 | 48634636 | - | mRNA | protein_coding |
| 192505 | enst00000594723 | sg00000105516 | dbp-203 | 19 | 48630693 | 48637313 | - | lnc_RNA | retained_intron |
| -192521 | enst00000447740 | sg00000105483 | card8-203 | 19 | 48208104 | 48249847 | - | mRNA | protein_coding |
| -192535 | enst00000520015 | sg00000105483 | card8-215 | 19 | 48211377 | 48249833 | - | mRNA | protein_coding |
| -192535 | enst00000522051 | sg00000105483 | card8-222 | 19 | 48210790 | 48249833 | - | lnc_RNA | retained_intron |
| -192540 | enst00000518596 | sg00000105483 | card8-207 | 19 | 48233821 | 48249828 | - | lnc_RNA | retained_intron |
| -192542 | enst00000519646 | sg00000105483 | card8-212 | 19 | 48211152 | 48249826 | - | mRNA | nonsense_mediated_decay |
| -192542 | enst00000521092 | sg00000105483 | card8-218 | 19 | 48234278 | 48249826 | - | lnc_RNA | retained_intron |
| -192542 | enst00000520153 | sg00000105483 | card8-216 | 19 | 48210787 | 48249826 | - | mRNA | protein_coding |
| -192552 | enst00000519302 | sg00000105483 | card8-210 | 19 | 48211897 | 48249816 | - | mRNA | nonsense_mediated_decay |
| 192555 | enst00000601104 | sg00000105516 | dbp-205 | 19 | 48633086 | 48637363 | - | mRNA | protein_coding |
| -192558 | enst00000522773 | sg00000105483 | card8-225 | 19 | 48210787 | 48249810 | - | mRNA | nonsense_mediated_decay |
| 192571 | enst00000222122 | sg00000105516 | dbp-201 | 19 | 48630030 | 48637379 | - | mRNA | protein_coding |
| -192597 | enst00000522431 | sg00000105483 | card8-224 | 19 | 48238262 | 48249771 | - | mRNA | protein_coding |
| -192700 | enst00000518979 | sg00000105483 | card8-209 | 19 | 48209644 | 48249668 | - | mRNA | nonsense_mediated_decay |
| -192700 | enst00000518622 | sg00000105483 | card8-208 | 19 | 48208086 | 48249668 | - | mRNA | nonsense_mediated_decay |
| -192754 | enst00000517778 | sg00000105483 | card8-205 | 19 | 48233846 | 48249614 | - | lnc_RNA | processed_transcript |
| 193263 | enst00000474419 | sg00000232871 | sec1p-203 | 19 | 48638071 | 48680225 | + | lnc_RNA | processed_transcript |
| 193263 | enst00000483163 | sg00000232871 | sec1p-204 | 19 | 48638071 | 48680225 | + | lnc_RNA | processed_transcript |
| 193291 | enst00000430145 | sg00000232871 | sec1p-201 | 19 | 48638099 | 48682245 | + | lnc_RNA | processed_transcript |
| 193577 | enst00000594088 | sg00000063180 | ca11-202 | 19 | 48638016 | 48638385 | - | lnc_RNA | retained_intron |
| 194330 | enst00000599267 | sg00000063180 | ca11-204 | 19 | 48638015 | 48639138 | - | lnc_RNA | retained_intron |
| 194651 | enst00000596080 | sg00000063180 | ca11-203 | 19 | 48638022 | 48639459 | - | mRNA | protein_coding |
| -201305 | enst00000521415 | sg00000105483 | card8-219 | 19 | 48211617 | 48241063 | - | mRNA | nonsense_mediated_decay |
| -201305 | enst00000391898 | sg00000105483 | card8-202 | 19 | 48208104 | 48241063 | - | mRNA | protein_coding |
| 201379 | enst00000084798 | sg00000063180 | ca11-201 | 19 | 48637946 | 48646187 | - | mRNA | protein_coding |
| -207904 | enst00000523750 | sg00000105483 | card8-229 | 19 | 48233410 | 48234464 | - | lnc_RNA | processed_transcript |
| -210254 | enst00000377461 | sg00000105483 | card8-201 | 19 | 48209644 | 48232114 | - | lnc_RNA | retained_intron |
| -211721 | enst00000523668 | sg00000105483 | card8-228 | 19 | 48215138 | 48230647 | - | lnc_RNA | retained_intron |
| -211870 | enst00000523579 | sg00000105483 | card8-227 | 19 | 48211827 | 48230498 | - | mRNA | nonsense_mediated_decay |
| -223415 | enst00000518450 | sg00000105483 | card8-206 | 19 | 48203146 | 48218953 | - | mRNA | nonsense_mediated_decay |
| 228199 | enst00000270235 | sg00000142233 | ntn5-201 | 19 | 48661407 | 48673007 | - | mRNA | protein_coding |
| 228219 | enst00000600468 | sg00000142233 | ntn5-203 | 19 | 48662475 | 48673027 | - | lnc_RNA | retained_intron |
| 228273 | enst00000596844 | sg00000142233 | ntn5-202 | 19 | 48661965 | 48673081 | - | mRNA | protein_coding |
| 235273 | enst00000473944 | sg00000232871 | sec1p-202 | 19 | 48680081 | 48681020 | + | pseudogenic_transcript | transcribed_unitary_pseudogene |
| -238297 | enst00000595201 | sg00000268583 | ac011466.1-201 | 19 | 48204071 | 48214751 | + | lnc_RNA | lncrna |
| -238416 | enst00000600800 | sg00000105483 | card8-230 | 19 | 48180770 | 48203952 | - | lnc_RNA | processed_transcript |
| -242648 | enst00000623064 | sg00000280353 | ac011466.4-201 | 19 | 48198107 | 48199720 | - | unconfirmed_transcript | tec |
| 251163 | enst00000522966 | sg00000176920 | fut2-204 | 19 | 48695971 | 48704294 | + | mRNA | protein_coding |
| 251163 | enst00000425340 | sg00000176920 | fut2-202 | 19 | 48695971 | 48705951 | + | mRNA | protein_coding |
| 251225 | enst00000522283 | sg00000176920 | fut2-203 | 19 | 48696033 | 48696643 | + | lnc_RNA | processed_transcript |
| 251231 | enst00000391876 | sg00000176920 | fut2-201 | 19 | 48696039 | 48705614 | + | mRNA | protein_coding |
| -270446 | enst00000593921 | sg00000185453 | zswim9-202 | 19 | 48171922 | 48174855 | + | lnc_RNA | processed_transcript |
| -271676 | enst00000328759 | sg00000185453 | zswim9-201 | 19 | 48170692 | 48197620 | + | mRNA | protein_coding |
| -271688 | enst00000614654 | sg00000185453 | zswim9-203 | 19 | 48170680 | 48197620 | + | mRNA | protein_coding |
| -271765 | enst00000536218 | sg00000105486 | lig1-203 | 19 | 48115446 | 48170603 | - | mRNA | protein_coding |
| -272024 | enst00000600055 | sg00000105486 | lig1-219 | 19 | 48161174 | 48170344 | - | lnc_RNA | retained_intron |
| -272024 | enst00000263274 | sg00000105486 | lig1-201 | 19 | 48115445 | 48170344 | - | mRNA | protein_coding |
| -272024 | enst00000427526 | sg00000105486 | lig1-202 | 19 | 48115450 | 48170344 | - | mRNA | protein_coding |
| 272035 | enst00000595591 | sg00000176909 | mamstr-204 | 19 | 48715344 | 48716843 | - | mRNA | protein_coding |
| -272039 | enst00000599165 | sg00000105486 | lig1-217 | 19 | 48149826 | 48170329 | - | lnc_RNA | processed_transcript |
| -272042 | enst00000594759 | sg00000105486 | lig1-207 | 19 | 48115450 | 48170326 | - | mRNA | nonsense_mediated_decay |
| -272046 | enst00000542460 | sg00000105486 | lig1-204 | 19 | 48136044 | 48170322 | - | mRNA | nonsense_mediated_decay |
| -272054 | enst00000596549 | sg00000105486 | lig1-212 | 19 | 48150132 | 48170314 | - | mRNA | protein_coding |
| -272116 | enst00000601091 | sg00000105486 | lig1-220 | 19 | 48115524 | 48170252 | - | mRNA | nonsense_mediated_decay |
| 272149 | enst00000356751 | sg00000176909 | mamstr-202 | 19 | 48712996 | 48716957 | - | mRNA | protein_coding |
| -272160 | enst00000598938 | sg00000105486 | lig1-216 | 19 | 48162284 | 48170208 | - | mRNA | protein_coding |
| 272213 | enst00000594582 | sg00000176909 | mamstr-203 | 19 | 48712997 | 48717021 | - | mRNA | protein_coding |
| -272679 | enst00000593425 | sg00000105486 | lig1-205 | 19 | 48153901 | 48169689 | - | mRNA | protein_coding |
| 274905 | enst00000599703 | sg00000176909 | mamstr-205 | 19 | 48714826 | 48719713 | - | mRNA | protein_coding |
| 274917 | enst00000318083 | sg00000176909 | mamstr-201 | 19 | 48712725 | 48719725 | - | mRNA | protein_coding |
| -276741 | enst00000613670 | sg00000105486 | lig1-221 | 19 | 48115524 | 48165627 | - | mRNA | protein_coding |
| 280773 | enst00000601530 | sg00000105538 | rasip1-204 | 19 | 48720587 | 48725581 | - | lnc_RNA | retained_intron |
| -287804 | enst00000596104 | sg00000105486 | lig1-209 | 19 | 48149810 | 48154564 | - | lnc_RNA | processed_transcript |
| -288161 | enst00000595758 | sg00000105486 | lig1-208 | 19 | 48149803 | 48154207 | - | lnc_RNA | retained_intron |
| -288321 | enst00000594067 | sg00000105486 | lig1-206 | 19 | 48115468 | 48154047 | - | lnc_RNA | retained_intron |
| 293897 | enst00000594232 | sg00000105538 | rasip1-202 | 19 | 48729553 | 48738705 | - | lnc_RNA | processed_transcript |
| 294210 | enst00000599291 | sg00000105538 | rasip1-203 | 19 | 48724830 | 48739018 | - | mRNA | protein_coding |
| 295802 | enst00000222145 | sg00000105538 | rasip1-201 | 19 | 48720585 | 48740610 | - | mRNA | protein_coding |
| -296460 | enst00000594589 | sg00000269321 | ac011466.2-201 | 19 | 48145908 | 48147413 | + | lnc_RNA | lncrna |
| 296715 | enst00000599871 | sg00000182264 | izumo1-205 | 19 | 48740852 | 48741523 | - | lnc_RNA | retained_intron |
| 301051 | enst00000595517 | sg00000182264 | izumo1-202 | 19 | 48740908 | 48745859 | - | mRNA | nonsense_mediated_decay |
| 301051 | enst00000595937 | sg00000182264 | izumo1-203 | 19 | 48740908 | 48745859 | - | mRNA | nonsense_mediated_decay |
| 301372 | enst00000597553 | sg00000182264 | izumo1-204 | 19 | 48743032 | 48746180 | - | lnc_RNA | retained_intron |
| 301989 | enst00000602105 | sg00000182264 | izumo1-206 | 19 | 48744464 | 48746797 | - | mRNA | protein_coding |
| 302101 | enst00000332955 | sg00000182264 | izumo1-201 | 19 | 48740852 | 48746909 | - | mRNA | protein_coding |
| -304477 | enst00000597901 | sg00000105486 | lig1-215 | 19 | 48135754 | 48137891 | - | lnc_RNA | retained_intron |
| -306646 | enst00000596672 | sg00000105486 | lig1-213 | 19 | 48121197 | 48135722 | - | mRNA | nonsense_mediated_decay |
| 308852 | enst00000601931 | sg00000174951 | fut1-204 | 19 | 48752612 | 48753660 | - | lnc_RNA | processed_transcript |
| 308852 | enst00000643950 | sg00000174951 | fut1-206 | 19 | 48752612 | 48753660 | - | lnc_RNA | processed_transcript |
| 308852 | enst00000645652 | sg00000174951 | fut1-207 | 19 | 48748011 | 48753660 | - | mRNA | protein_coding |
| 308852 | enst00000599826 | sg00000174951 | fut1-203 | 19 | 48752612 | 48753660 | - | lnc_RNA | processed_transcript |
| -308874 | enst00000596457 | sg00000105486 | lig1-211 | 19 | 48127277 | 48133494 | - | lnc_RNA | retained_intron |
| 310582 | enst00000597220 | sg00000174951 | fut1-202 | 19 | 48752612 | 48755390 | - | lnc_RNA | processed_transcript |
| 310582 | enst00000310160 | sg00000174951 | fut1-201 | 19 | 48748011 | 48755390 | - | mRNA | protein_coding |
| 310582 | enst00000601988 | sg00000174951 | fut1-205 | 19 | 48752612 | 48755390 | - | lnc_RNA | processed_transcript |
| 310716 | enst00000593756 | sg00000105550 | fgf21-202 | 19 | 48755524 | 48758330 | + | mRNA | protein_coding |
| 311279 | enst00000222157 | sg00000105550 | fgf21-201 | 19 | 48756087 | 48758333 | + | mRNA | protein_coding |
| -318745 | enst00000596332 | sg00000105486 | lig1-210 | 19 | 48121272 | 48123623 | - | lnc_RNA | retained_intron |
| -323930 | enst00000596839 | sg00000269534 | ac011466.3-202 | 19 | 48118438 | 48127384 | + | lnc_RNA | lncrna |
| -323936 | enst00000596563 | sg00000269534 | ac011466.3-201 | 19 | 48118432 | 48127706 | + | lnc_RNA | lncrna |
| -324488 | enst00000599322 | sg00000105486 | lig1-218 | 19 | 48115449 | 48117880 | - | lnc_RNA | retained_intron |
| -326194 | enst00000597146 | sg00000105486 | lig1-214 | 19 | 48115446 | 48116174 | - | lnc_RNA | retained_intron |
| -331551 | enst00000599921 | sg00000105499 | pla2g4c-222 | 19 | 48047846 | 48110817 | - | mRNA | protein_coding |
| -331551 | enst00000599111 | sg00000105499 | pla2g4c-219 | 19 | 48047843 | 48110817 | - | mRNA | protein_coding |
| -331555 | enst00000594156 | sg00000105499 | pla2g4c-203 | 19 | 48099798 | 48110813 | - | lnc_RNA | processed_transcript |
| -331586 | enst00000354276 | sg00000105499 | pla2g4c-201 | 19 | 48047844 | 48110782 | - | mRNA | protein_coding |
| -331601 | enst00000599063 | sg00000105499 | pla2g4c-218 | 19 | 48097765 | 48110767 | - | lnc_RNA | retained_intron |
| -331622 | enst00000596138 | sg00000105499 | pla2g4c-208 | 19 | 48105334 | 48110746 | - | mRNA | protein_coding |
| -331805 | enst00000598813 | sg00000105499 | pla2g4c-217 | 19 | 48103420 | 48110563 | - | lnc_RNA | processed_transcript |
| -331805 | enst00000598488 | sg00000105499 | pla2g4c-216 | 19 | 48105403 | 48110563 | - | mRNA | nonsense_mediated_decay |
| -331805 | enst00000596352 | sg00000105499 | pla2g4c-209 | 19 | 48099782 | 48110563 | - | mRNA | protein_coding |
| -331805 | enst00000595899 | sg00000105499 | pla2g4c-207 | 19 | 48099772 | 48110563 | - | lnc_RNA | processed_transcript |
| -331807 | enst00000595487 | sg00000105499 | pla2g4c-206 | 19 | 48099744 | 48110561 | - | mRNA | nonsense_mediated_decay |
| -336887 | enst00000600170 | sg00000105499 | pla2g4c-223 | 19 | 48104032 | 48105481 | - | lnc_RNA | retained_intron |
| -342362 | enst00000597377 | sg00000105499 | pla2g4c-212 | 19 | 48097022 | 48100006 | - | lnc_RNA | retained_intron |
| -342611 | enst00000598457 | sg00000105499 | pla2g4c-215 | 19 | 48090194 | 48099757 | - | lnc_RNA | retained_intron |
| -344131 | enst00000597713 | sg00000105499 | pla2g4c-213 | 19 | 48095464 | 48098237 | - | mRNA | nonsense_mediated_decay |
| -344160 | enst00000601946 | sg00000105499 | pla2g4c-224 | 19 | 48062122 | 48098208 | - | mRNA | protein_coding |
| -345431 | enst00000599239 | sg00000105499 | pla2g4c-220 | 19 | 48061632 | 48096937 | - | lnc_RNA | processed_transcript |
| 348450 | enst00000384031 | sg00000206758 | rnu6-317p-201 | 19 | 48793152 | 48793258 | - | snRNA | snrna |
| -351765 | enst00000598185 | sg00000105499 | pla2g4c-214 | 19 | 48074846 | 48090603 | - | lnc_RNA | retained_intron |
| -351959 | enst00000599300 | sg00000105499 | pla2g4c-221 | 19 | 48054922 | 48090409 | - | mRNA | protein_coding |
| 352735 | enst00000599510 | sg00000105552 | bcat2-210 | 19 | 48796247 | 48797543 | - | lnc_RNA | retained_intron |
| -357258 | enst00000593765 | sg00000105499 | pla2g4c-202 | 19 | 48074438 | 48085110 | - | lnc_RNA | retained_intron |
| 362266 | enst00000593515 | sg00000105552 | bcat2-204 | 19 | 48795100 | 48807074 | - | mRNA | protein_coding |
| 362513 | enst00000650724 | sg00000286024 | ac026803.3-201 | 19 | 48807321 | 48810717 | + | lnc_RNA | lncrna |
| 362984 | enst00000595376 | sg00000105552 | bcat2-205 | 19 | 48798810 | 48807792 | - | lnc_RNA | retained_intron |
| 366108 | enst00000597011 | sg00000105552 | bcat2-207 | 19 | 48795110 | 48810916 | - | mRNA | protein_coding |
| 366113 | enst00000601681 | sg00000105552 | bcat2-212 | 19 | 48800066 | 48810921 | - | mRNA | protein_coding |
| 366204 | enst00000545387 | sg00000105552 | bcat2-203 | 19 | 48795062 | 48811012 | - | mRNA | protein_coding |
| 366219 | enst00000598162 | sg00000105552 | bcat2-208 | 19 | 48796259 | 48811027 | - | mRNA | protein_coding |
| 366219 | enst00000402551 | sg00000105552 | bcat2-202 | 19 | 48795065 | 48811027 | - | mRNA | protein_coding |
| 366221 | enst00000599246 | sg00000105552 | bcat2-209 | 19 | 48795865 | 48811029 | - | mRNA | protein_coding |
| 366221 | enst00000596981 | sg00000105552 | bcat2-206 | 19 | 48807789 | 48811029 | - | lnc_RNA | processed_transcript |
| 366221 | enst00000316273 | sg00000105552 | bcat2-201 | 19 | 48795064 | 48811029 | - | mRNA | protein_coding |
| 366221 | enst00000601496 | sg00000105552 | bcat2-211 | 19 | 48807013 | 48811029 | - | lnc_RNA | processed_transcript |
| -367531 | enst00000595161 | sg00000105499 | pla2g4c-205 | 19 | 48061360 | 48074837 | - | mRNA | protein_coding |
| -369317 | enst00000596510 | sg00000105499 | pla2g4c-211 | 19 | 48051797 | 48073051 | - | lnc_RNA | processed_transcript |
| 370264 | enst00000596349 | sg00000087076 | hsd17b14-203 | 19 | 48813018 | 48815072 | - | mRNA | protein_coding |
| -374437 | enst00000596353 | sg00000105499 | pla2g4c-210 | 19 | 48054890 | 48067931 | - | lnc_RNA | retained_intron |
| -380930 | enst00000601950 | sg00000269420 | pla2g4c-as1-203 | 19 | 48061438 | 48062222 | + | lnc_RNA | lncrna |
| -380940 | enst00000596552 | sg00000269420 | pla2g4c-as1-201 | 19 | 48061428 | 48064945 | + | lnc_RNA | lncrna |
| -380997 | enst00000601548 | sg00000269420 | pla2g4c-as1-202 | 19 | 48061371 | 48062255 | + | lnc_RNA | lncrna |
| -387309 | enst00000594790 | sg00000105499 | pla2g4c-204 | 19 | 48047846 | 48055059 | - | lnc_RNA | retained_intron |
| 391015 | enst00000595764 | sg00000087076 | hsd17b14-202 | 19 | 48813109 | 48835823 | - | mRNA | protein_coding |
| 391683 | enst00000263278 | sg00000087076 | hsd17b14-201 | 19 | 48813018 | 48836491 | - | mRNA | protein_coding |
| 391702 | enst00000599157 | sg00000087076 | hsd17b14-204 | 19 | 48813024 | 48836510 | - | mRNA | protein_coding |
| 393506 | enst00000601146 | sg00000105559 | plekha4-211 | 19 | 48837183 | 48838314 | - | lnc_RNA | retained_intron |
| -398289 | enst00000293255 | sg00000105507 | cabp5-201 | 19 | 48029383 | 48044079 | - | mRNA | protein_coding |
| -398487 | enst00000602032 | sg00000105507 | cabp5-202 | 19 | 48041329 | 48043881 | - | lnc_RNA | retained_intron |
| 400743 | enst00000597129 | sg00000105559 | plekha4-209 | 19 | 48837110 | 48845551 | - | mRNA | protein_coding |
| 400788 | enst00000593696 | sg00000105559 | plekha4-203 | 19 | 48845141 | 48845596 | - | lnc_RNA | retained_intron |
| 407498 | enst00000597406 | sg00000105559 | plekha4-210 | 19 | 48845193 | 48852306 | - | lnc_RNA | retained_intron |
| 414566 | enst00000594195 | sg00000105559 | plekha4-205 | 19 | 48852238 | 48859374 | - | mRNA | protein_coding |
| 414574 | enst00000595867 | sg00000105559 | plekha4-206 | 19 | 48845551 | 48859382 | - | mRNA | protein_coding |
| 415310 | enst00000596713 | sg00000105559 | plekha4-207 | 19 | 48858861 | 48860118 | - | lnc_RNA | processed_transcript |
| 420749 | enst00000596982 | sg00000105559 | plekha4-208 | 19 | 48859097 | 48865557 | - | mRNA | nonsense_mediated_decay |
| -422563 | enst00000593413 | sg00000169393 | elspbp1-202 | 19 | 48019805 | 48025148 | + | mRNA | protein_coding |
| 422787 | enst00000594100 | sg00000105559 | plekha4-204 | 19 | 48859097 | 48867595 | - | mRNA | protein_coding |
| 423646 | enst00000355496 | sg00000105559 | plekha4-202 | 19 | 48837097 | 48868454 | - | mRNA | protein_coding |
| 423809 | enst00000263265 | sg00000105559 | plekha4-201 | 19 | 48837097 | 48868617 | - | mRNA | protein_coding |
| -426475 | enst00000593782 | sg00000169393 | elspbp1-203 | 19 | 48015893 | 48025134 | + | mRNA | protein_coding |
| 427613 | enst00000200453 | sg00000087074 | ppp1r15a-201 | 19 | 48872421 | 48876058 | + | mRNA | protein_coding |
| 429510 | enst00000600406 | sg00000087074 | ppp1r15a-202 | 19 | 48874318 | 48876042 | + | mRNA | protein_coding |
| -433719 | enst00000619003 | sg00000169393 | elspbp1-206 | 19 | 48008649 | 48025142 | + | mRNA | protein_coding |
| 437317 | enst00000522341 | sg00000104804 | tulp2-205 | 19 | 48880971 | 48882125 | - | mRNA | protein_coding |
| -447659 | enst00000597519 | sg00000169393 | elspbp1-205 | 19 | 47994709 | 48025153 | + | mRNA | protein_coding |
| -447663 | enst00000596043 | sg00000169393 | elspbp1-204 | 19 | 47994705 | 48022243 | + | mRNA | protein_coding |
| -447736 | enst00000339841 | sg00000169393 | elspbp1-201 | 19 | 47994632 | 48025154 | + | mRNA | protein_coding |
| -450198 | enst00000344839 | sg00000188334 | bsph1-201 | 19 | 47968046 | 47992170 | - | mRNA | protein_coding |
| 451931 | enst00000522229 | sg00000104804 | tulp2-204 | 19 | 48895375 | 48896739 | - | lnc_RNA | retained_intron |
| 452651 | enst00000520977 | sg00000104804 | tulp2-203 | 19 | 48889528 | 48897459 | - | mRNA | protein_coding |
| 453574 | enst00000522945 | sg00000104804 | tulp2-206 | 19 | 48888258 | 48898382 | - | mRNA | protein_coding |
| 453825 | enst00000518572 | sg00000104804 | tulp2-202 | 19 | 48888068 | 48898633 | - | mRNA | protein_coding |
| 453936 | enst00000221399 | sg00000104804 | tulp2-201 | 19 | 48880967 | 48898744 | - | mRNA | protein_coding |
| 455504 | enst00000405315 | sg00000104805 | nucb1-201 | 19 | 48900312 | 48923372 | + | mRNA | protein_coding |
| 455512 | enst00000407032 | sg00000104805 | nucb1-202 | 19 | 48900320 | 48923271 | + | mRNA | protein_coding |
| 455515 | enst00000452087 | sg00000104805 | nucb1-207 | 19 | 48900323 | 48918744 | + | mRNA | protein_coding |
| 455531 | enst00000485798 | sg00000104805 | nucb1-211 | 19 | 48900339 | 48922944 | + | lnc_RNA | processed_transcript |
| 455547 | enst00000443560 | sg00000104805 | nucb1-205 | 19 | 48900355 | 48905841 | + | mRNA | nonsense_mediated_decay |
| 455562 | enst00000411700 | sg00000104805 | nucb1-203 | 19 | 48900370 | 48905882 | + | mRNA | protein_coding |
| 455758 | enst00000451312 | sg00000104805 | nucb1-206 | 19 | 48900566 | 48905841 | + | mRNA | protein_coding |
| 455990 | enst00000424608 | sg00000104805 | nucb1-204 | 19 | 48900798 | 48919259 | + | mRNA | protein_coding |
| 466410 | enst00000465524 | sg00000104805 | nucb1-209 | 19 | 48911218 | 48921866 | + | lnc_RNA | retained_intron |
| 473568 | enst00000460125 | sg00000104805 | nucb1-208 | 19 | 48918376 | 48919148 | + | lnc_RNA | retained_intron |
| 473937 | enst00000469291 | sg00000104805 | nucb1-210 | 19 | 48918745 | 48921264 | + | lnc_RNA | retained_intron |
| 474083 | enst00000416432 | sg00000235191 | nucb1-as1-201 | 19 | 48910930 | 48918891 | - | lnc_RNA | lncrna |
| 474192 | enst00000492367 | sg00000104805 | nucb1-212 | 19 | 48919000 | 48923268 | + | lnc_RNA | retained_intron |
| 481363 | enst00000569130 | sg00000260366 | ac026803.1-201 | 19 | 48926171 | 48926444 | + | lnc_RNA | lncrna |
| 488891 | enst00000221403 | sg00000104808 | dhdh-201 | 19 | 48933699 | 48944969 | + | mRNA | protein_coding |
| 488894 | enst00000523250 | sg00000104808 | dhdh-204 | 19 | 48933702 | 48944959 | + | mRNA | protein_coding |
| 488897 | enst00000522614 | sg00000104808 | dhdh-203 | 19 | 48933705 | 48944963 | + | mRNA | protein_coding |
| 488950 | enst00000520557 | sg00000104808 | dhdh-202 | 19 | 48933758 | 48944968 | + | mRNA | nonsense_mediated_decay |
Source file: /hps/research1/birney/users/adrien/analyses/cancer_DNA_promethion/run_1_2_3_4/DNA_pipeline_2/results/methylation/pycometh_meth_comp_CGI_3/out.tsv.gz
MD5 hash: 9aa0e3f69cb4e12345c3758eb68a5efc