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CpG interval report generated on 20/05/20 with pycoMeth 0.4.6
Interval details
| pvalue rank | chromosome | start | end | length | number of samples | number of CpGs | pvalue | adjusted pvalue |
|---|---|---|---|---|---|---|---|---|
| #128 | 5 | 11384413 | 11385577 | 1164 | 3 | 36 | 2.02899e-16 | 1.57643e-14 |
Methylation log-likelihood ratio by CpG position
Distribution of CpG methylation log-likelihood ratio by sample
Closest transcripts TSS
| distance to tss | transcript id | gene id | transcript name | chromosome | start | end | strand | feature type | transcript biotype |
|---|---|---|---|---|---|---|---|---|---|
| 0 | enst00000495388 | sg00000169862 | ctnnd2-203 | 5 | 10972532 | 11384771 | - | lnc_RNA | processed_transcript |
| 0 | enst00000506735 | sg00000169862 | ctnnd2-209 | 5 | 11346595 | 11384912 | - | lnc_RNA | processed_transcript |
| 0 | enst00000507430 | sg00000169862 | ctnnd2-210 | 5 | 11364598 | 11384937 | - | lnc_RNA | retained_intron |
| 434 | enst00000514132 | sg00000169862 | ctnnd2-217 | 5 | 11384982 | 11386011 | - | lnc_RNA | processed_transcript |
| 203234 | enst00000513598 | sg00000169862 | ctnnd2-216 | 5 | 11385025 | 11588811 | - | mRNA | protein_coding |
| 203271 | enst00000503622 | sg00000169862 | ctnnd2-205 | 5 | 10973340 | 11588848 | - | mRNA | protein_coding |
| 203271 | enst00000504354 | sg00000169862 | ctnnd2-206 | 5 | 11346428 | 11588848 | - | lnc_RNA | processed_transcript |
| 203442 | enst00000511377 | sg00000169862 | ctnnd2-214 | 5 | 10972895 | 11589019 | - | mRNA | protein_coding |
| -266921 | enst00000458100 | sg00000169862 | ctnnd2-202 | 5 | 10972933 | 11117492 | - | mRNA | protein_coding |
| -357213 | enst00000384582 | sg00000207312 | rnu6-429p-201 | 5 | 11027200 | 11027307 | + | snRNA | snrna |
| -366353 | enst00000506324 | sg00000169862 | ctnnd2-208 | 5 | 10973587 | 11018060 | - | lnc_RNA | processed_transcript |
Source file: /hps/research1/birney/users/adrien/analyses/cancer_DNA_promethion/run_1_2_3_4/DNA_pipeline_2/results/methylation/pycometh_meth_comp_CGI_3/out.tsv.gz
MD5 hash: 9aa0e3f69cb4e12345c3758eb68a5efc