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CpG interval report generated on 20/05/20 with pycoMeth 0.4.6
Interval details
| pvalue rank | chromosome | start | end | length | number of samples | number of CpGs | pvalue | adjusted pvalue |
|---|---|---|---|---|---|---|---|---|
| #124 | 16 | 1019132 | 1020232 | 1100 | 3 | 37 | 1.49948e-16 | 1.20261e-14 |
Methylation log-likelihood ratio by CpG position
Distribution of CpG methylation log-likelihood ratio by sample
Closest transcripts TSS
| distance to tss | transcript id | gene id | transcript name | chromosome | start | end | strand | feature type | transcript biotype |
|---|---|---|---|---|---|---|---|---|---|
| -18206 | enst00000599946 | sg00000260496 | ac009041.1-202 | 16 | 991151 | 1000926 | - | lnc_RNA | lncrna |
| -21225 | enst00000565401 | sg00000260496 | ac009041.1-201 | 16 | 996319 | 997907 | - | lnc_RNA | lncrna |
| -37046 | enst00000566034 | sg00000005513 | sox8-202 | 16 | 982086 | 986978 | + | lnc_RNA | retained_intron |
| -37362 | enst00000293894 | sg00000005513 | sox8-201 | 16 | 981770 | 986979 | + | mRNA | protein_coding |
| -37536 | enst00000565467 | sg00000260807 | cerox1-206 | 16 | 975761 | 981596 | - | lnc_RNA | lncrna |
| -37542 | enst00000568394 | sg00000260807 | cerox1-208 | 16 | 975761 | 981590 | - | lnc_RNA | lncrna |
| -37814 | enst00000545827 | sg00000103227 | lmf1-203 | 16 | 853638 | 981318 | - | mRNA | nonsense_mediated_decay |
| -37834 | enst00000563863 | sg00000260807 | cerox1-203 | 16 | 975764 | 981298 | - | lnc_RNA | lncrna |
| -37834 | enst00000565069 | sg00000260807 | cerox1-204 | 16 | 976521 | 981298 | - | lnc_RNA | lncrna |
| -37835 | enst00000570014 | sg00000103227 | lmf1-215 | 16 | 871317 | 981297 | - | mRNA | protein_coding |
| -37839 | enst00000563837 | sg00000260807 | cerox1-202 | 16 | 976787 | 981293 | - | lnc_RNA | lncrna |
| -38219 | enst00000562570 | sg00000260807 | cerox1-201 | 16 | 975761 | 980913 | - | lnc_RNA | lncrna |
| -38892 | enst00000669274 | sg00000260807 | cerox1-211 | 16 | 976154 | 980240 | - | lnc_RNA | lncrna |
| -38900 | enst00000655952 | sg00000260807 | cerox1-209 | 16 | 976154 | 980232 | - | lnc_RNA | lncrna |
| -39484 | enst00000662104 | sg00000260807 | cerox1-210 | 16 | 976084 | 979648 | - | lnc_RNA | lncrna |
| -42206 | enst00000565139 | sg00000260807 | cerox1-205 | 16 | 975761 | 976926 | - | lnc_RNA | lncrna |
| -42220 | enst00000567961 | sg00000260807 | cerox1-207 | 16 | 975761 | 976912 | - | lnc_RNA | lncrna |
| 45008 | enst00000564390 | sg00000261720 | ac009041.2-201 | 16 | 1065240 | 1066502 | + | lnc_RNA | lncrna |
| 47004 | enst00000569734 | sg00000261713 | sstr5-as1-203 | 16 | 1066376 | 1067236 | - | lnc_RNA | lncrna |
| -48133 | enst00000262301 | sg00000103227 | lmf1-201 | 16 | 853634 | 970999 | - | mRNA | protein_coding |
| -48150 | enst00000566609 | sg00000103227 | lmf1-208 | 16 | 952575 | 970982 | - | lnc_RNA | processed_transcript |
| -48150 | enst00000562226 | sg00000103227 | lmf1-204 | 16 | 879688 | 970982 | - | mRNA | nonsense_mediated_decay |
| -48169 | enst00000568964 | sg00000103227 | lmf1-213 | 16 | 881419 | 970963 | - | mRNA | nonsense_mediated_decay |
| -48172 | enst00000543238 | sg00000103227 | lmf1-202 | 16 | 853643 | 970960 | - | mRNA | protein_coding |
| -48222 | enst00000567595 | sg00000103227 | lmf1-210 | 16 | 911016 | 970910 | - | mRNA | nonsense_mediated_decay |
| -48266 | enst00000568897 | sg00000103227 | lmf1-212 | 16 | 854512 | 970866 | - | mRNA | protein_coding |
| -50120 | enst00000620075 | sg00000276931 | ac009041.3-201 | 16 | 968375 | 969012 | - | lnc_RNA | lncrna |
| 53371 | enst00000565992 | sg00000261713 | sstr5-as1-201 | 16 | 1066248 | 1073603 | - | lnc_RNA | lncrna |
| -55010 | enst00000562380 | sg00000103227 | lmf1-205 | 16 | 910980 | 964122 | - | mRNA | protein_coding |
| 58441 | enst00000569832 | sg00000261713 | sstr5-as1-204 | 16 | 1064093 | 1078673 | - | lnc_RNA | lncrna |
| 58475 | enst00000566499 | sg00000261713 | sstr5-as1-202 | 16 | 1066494 | 1078707 | - | lnc_RNA | lncrna |
| 58499 | enst00000624643 | sg00000261713 | sstr5-as1-205 | 16 | 1077722 | 1078731 | - | unconfirmed_transcript | tec |
| 58549 | enst00000293897 | sg00000162009 | sstr5-201 | 16 | 1078781 | 1080142 | + | mRNA | protein_coding |
| -71488 | enst00000566627 | sg00000103227 | lmf1-209 | 16 | 871287 | 947644 | - | mRNA | protein_coding |
| 75415 | enst00000621771 | sg00000184471 | c1qtnf8-202 | 16 | 1090517 | 1095647 | - | mRNA | protein_coding |
| 76012 | enst00000328449 | sg00000184471 | c1qtnf8-201 | 16 | 1088226 | 1096244 | - | mRNA | protein_coding |
| 85229 | enst00000564813 | sg00000260702 | al031713.1-201 | 16 | 1101260 | 1105461 | - | pseudogenic_transcript | unprocessed_pseudogene |
| 91395 | enst00000561511 | sg00000260532 | al031598.1-201 | 16 | 1111627 | 1113399 | + | lnc_RNA | lncrna |
| -98059 | enst00000569574 | sg00000260439 | lmf1-as1-202 | 16 | 921073 | 934495 | + | lnc_RNA | lncrna |
| -98099 | enst00000567820 | sg00000260439 | lmf1-as1-201 | 16 | 921033 | 934266 | + | lnc_RNA | lncrna |
| -113908 | enst00000564460 | sg00000260316 | al008727.1-201 | 16 | 898967 | 905224 | - | lnc_RNA | lncrna |
| -125880 | enst00000565198 | sg00000103227 | lmf1-206 | 16 | 870874 | 893252 | - | lnc_RNA | retained_intron |
| 128522 | enst00000614275 | sg00000273551 | ac120498.8-201 | 16 | 1148224 | 1148754 | - | lnc_RNA | lncrna |
| -132001 | enst00000568268 | sg00000103227 | lmf1-211 | 16 | 870833 | 887131 | - | lnc_RNA | processed_transcript |
| 132874 | enst00000348261 | sg00000196557 | cacna1h-201 | 16 | 1153106 | 1221768 | + | mRNA | protein_coding |
| 133009 | enst00000640028 | sg00000196557 | cacna1h-212 | 16 | 1153241 | 1221771 | + | mRNA | nonsense_mediated_decay |
| 133009 | enst00000639478 | sg00000196557 | cacna1h-211 | 16 | 1153241 | 1221771 | + | mRNA | nonsense_mediated_decay |
| 133009 | enst00000358590 | sg00000196557 | cacna1h-202 | 16 | 1153241 | 1221771 | + | mRNA | protein_coding |
| 133009 | enst00000638323 | sg00000196557 | cacna1h-210 | 16 | 1153241 | 1221771 | + | mRNA | protein_coding |
| 133506 | enst00000565831 | sg00000196557 | cacna1h-206 | 16 | 1153738 | 1221765 | + | mRNA | protein_coding |
| -135352 | enst00000569106 | sg00000260022 | al031716.1-201 | 16 | 883780 | 885090 | + | lnc_RNA | lncrna |
| 137742 | enst00000568884 | sg00000260403 | ac120498.3-201 | 16 | 1156976 | 1157974 | - | lnc_RNA | lncrna |
| 139944 | enst00000563593 | sg00000259910 | ac120498.1-201 | 16 | 1159548 | 1160176 | - | lnc_RNA | lncrna |
| -145272 | enst00000569516 | sg00000103227 | lmf1-214 | 16 | 854500 | 873860 | - | lnc_RNA | retained_intron |
| -148383 | enst00000570168 | sg00000103227 | lmf1-216 | 16 | 869180 | 870749 | - | lnc_RNA | processed_transcript |
| -150164 | enst00000565276 | sg00000103227 | lmf1-207 | 16 | 854500 | 868968 | - | mRNA | nonsense_mediated_decay |
| -163184 | enst00000611669 | sg00000103227 | lmf1-217 | 16 | 854501 | 855948 | - | lnc_RNA | retained_intron |
| -170067 | enst00000619963 | sg00000275438 | al031008.1-201 | 16 | 848525 | 849065 | - | lnc_RNA | lncrna |
| 174797 | enst00000564954 | sg00000196557 | cacna1h-205 | 16 | 1195029 | 1198934 | + | lnc_RNA | retained_intron |
| 186892 | enst00000564700 | sg00000261294 | ac120498.6-201 | 16 | 1206560 | 1207124 | - | lnc_RNA | lncrna |
| 189124 | enst00000637236 | sg00000196557 | cacna1h-209 | 16 | 1209356 | 1211294 | + | mRNA | nonsense_mediated_decay |
| 189835 | enst00000562079 | sg00000196557 | cacna1h-203 | 16 | 1210067 | 1221084 | + | mRNA | protein_coding |
| 189835 | enst00000564231 | sg00000196557 | cacna1h-204 | 16 | 1210067 | 1221084 | + | mRNA | protein_coding |
| 189835 | enst00000569107 | sg00000196557 | cacna1h-207 | 16 | 1210067 | 1221084 | + | mRNA | protein_coding |
| 190376 | enst00000569953 | sg00000196557 | cacna1h-208 | 16 | 1210608 | 1211448 | + | lnc_RNA | retained_intron |
| -201643 | enst00000655150 | sg00000287855 | al023882.1-201 | 16 | 817489 | 862843 | + | lnc_RNA | lncrna |
| 203407 | enst00000621827 | sg00000277010 | ac120498.10-201 | 16 | 1223639 | 1224143 | + | lnc_RNA | lncrna |
| 204543 | enst00000564684 | sg00000116176 | tpsg1-202 | 16 | 1222659 | 1224775 | - | lnc_RNA | retained_intron |
| 205025 | enst00000234798 | sg00000116176 | tpsg1-201 | 16 | 1221651 | 1225257 | - | mRNA | protein_coding |
| 209930 | enst00000612142 | sg00000197253 | tpsb2-203 | 16 | 1228337 | 1230162 | - | mRNA | protein_coding |
| 209952 | enst00000606293 | sg00000197253 | tpsb2-201 | 16 | 1228336 | 1230184 | - | mRNA | protein_coding |
| 209952 | enst00000611196 | sg00000197253 | tpsb2-202 | 16 | 1227272 | 1230184 | - | mRNA | nonsense_mediated_decay |
| -218398 | enst00000248150 | sg00000127588 | gng13-201 | 16 | 798041 | 800734 | - | mRNA | protein_coding |
| 220473 | enst00000338844 | sg00000172236 | tpsab1-201 | 16 | 1240705 | 1242554 | + | mRNA | protein_coding |
| 220492 | enst00000461509 | sg00000172236 | tpsab1-202 | 16 | 1240724 | 1242554 | + | mRNA | protein_coding |
| 220706 | enst00000562432 | sg00000172236 | tpsab1-204 | 16 | 1240938 | 1242093 | + | lnc_RNA | retained_intron |
| 221019 | enst00000561736 | sg00000172236 | tpsab1-203 | 16 | 1241251 | 1242516 | + | mRNA | protein_coding |
| -221091 | enst00000564940 | sg00000127586 | chtf18-215 | 16 | 798041 | 800737 | + | lnc_RNA | processed_transcript |
| -222517 | enst00000498439 | sg00000127586 | chtf18-213 | 16 | 796615 | 798074 | + | lnc_RNA | retained_intron |
| -224430 | enst00000493715 | sg00000127586 | chtf18-212 | 16 | 794702 | 796758 | + | lnc_RNA | processed_transcript |
| -226608 | enst00000461268 | sg00000127586 | chtf18-206 | 16 | 792524 | 795720 | + | lnc_RNA | processed_transcript |
| -227995 | enst00000565787 | sg00000127586 | chtf18-216 | 16 | 791137 | 792814 | + | lnc_RNA | retained_intron |
| -228433 | enst00000567620 | sg00000127586 | chtf18-217 | 16 | 790699 | 791879 | + | lnc_RNA | retained_intron |
| -228881 | enst00000569270 | sg00000127586 | chtf18-218 | 16 | 790251 | 793006 | + | mRNA | nonsense_mediated_decay |
| -229813 | enst00000484349 | sg00000127586 | chtf18-210 | 16 | 789319 | 790549 | + | lnc_RNA | retained_intron |
| -229819 | enst00000426047 | sg00000127586 | chtf18-203 | 16 | 789313 | 791370 | + | mRNA | protein_coding |
| -229918 | enst00000491530 | sg00000127586 | chtf18-211 | 16 | 789214 | 791370 | + | lnc_RNA | processed_transcript |
| -230497 | enst00000471202 | sg00000127586 | chtf18-208 | 16 | 788635 | 798072 | + | lnc_RNA | retained_intron |
| -230507 | enst00000317063 | sg00000127586 | chtf18-202 | 16 | 788625 | 797975 | + | mRNA | protein_coding |
| -230507 | enst00000440239 | sg00000127586 | chtf18-204 | 16 | 788625 | 793190 | + | mRNA | nonsense_mediated_decay |
| -230508 | enst00000570058 | sg00000127586 | chtf18-219 | 16 | 788624 | 789340 | + | lnc_RNA | processed_transcript |
| -230508 | enst00000563545 | sg00000127586 | chtf18-214 | 16 | 788624 | 789636 | + | mRNA | nonsense_mediated_decay |
| -230508 | enst00000479976 | sg00000127586 | chtf18-209 | 16 | 788624 | 790805 | + | lnc_RNA | retained_intron |
| -230508 | enst00000455171 | sg00000127586 | chtf18-205 | 16 | 788624 | 798074 | + | mRNA | protein_coding |
| -230510 | enst00000464728 | sg00000127586 | chtf18-207 | 16 | 788622 | 798063 | + | lnc_RNA | retained_intron |
| -230512 | enst00000262315 | sg00000127586 | chtf18-201 | 16 | 788620 | 798074 | + | mRNA | protein_coding |
| -230735 | enst00000567114 | sg00000007376 | rpusd1-208 | 16 | 785014 | 788397 | - | mRNA | protein_coding |
| -230751 | enst00000565377 | sg00000007376 | rpusd1-205 | 16 | 785983 | 788381 | - | mRNA | protein_coding |
| -230751 | enst00000007264 | sg00000007376 | rpusd1-201 | 16 | 784974 | 788381 | - | mRNA | protein_coding |
| -230761 | enst00000565809 | sg00000007376 | rpusd1-207 | 16 | 784991 | 788371 | - | mRNA | protein_coding |
| -230792 | enst00000565503 | sg00000007376 | rpusd1-206 | 16 | 786826 | 788340 | - | mRNA | nonsense_mediated_decay |
| -230798 | enst00000569601 | sg00000007376 | rpusd1-210 | 16 | 785968 | 788334 | - | mRNA | protein_coding |
| -230799 | enst00000567283 | sg00000007376 | rpusd1-209 | 16 | 786149 | 788333 | - | mRNA | nonsense_mediated_decay |
| -230803 | enst00000563560 | sg00000007376 | rpusd1-204 | 16 | 786841 | 788329 | - | mRNA | protein_coding |
| -231086 | enst00000631357 | sg00000127586 | chtf18-220 | 16 | 788046 | 797975 | + | mRNA | protein_coding |
| -231151 | enst00000561734 | sg00000007376 | rpusd1-202 | 16 | 784974 | 787981 | - | mRNA | protein_coding |
| -231663 | enst00000562070 | sg00000007376 | rpusd1-203 | 16 | 786194 | 787469 | - | mRNA | protein_coding |
| -235762 | enst00000442466 | sg00000162006 | mslnl-201 | 16 | 769428 | 783370 | - | mRNA | protein_coding |
| 235827 | enst00000397534 | sg00000095917 | tpsd1-202 | 16 | 1256059 | 1258531 | + | mRNA | protein_coding |
| 235837 | enst00000211076 | sg00000095917 | tpsd1-201 | 16 | 1256069 | 1259008 | + | mRNA | protein_coding |
| -237078 | enst00000543963 | sg00000162006 | mslnl-203 | 16 | 769428 | 782054 | - | mRNA | protein_coding |
| 237107 | enst00000566997 | sg00000260182 | ac120498.2-201 | 16 | 1257339 | 1258074 | + | lnc_RNA | lncrna |
| -240432 | enst00000537221 | sg00000162006 | mslnl-202 | 16 | 774188 | 778700 | - | lnc_RNA | retained_intron |
| 242765 | enst00000440800 | sg00000196364 | prss29p-201 | 16 | 1261422 | 1262997 | - | pseudogenic_transcript | transcribed_unprocessed_pseudogene |
| 243613 | enst00000568091 | sg00000196364 | prss29p-202 | 16 | 1260952 | 1263845 | - | lnc_RNA | processed_transcript |
| -248949 | enst00000384847 | sg00000207579 | mir662-201 | 16 | 770183 | 770277 | + | miRNA | mirna |
| -249689 | enst00000623562 | sg00000279136 | al031258.1-201 | 16 | 769119 | 769443 | - | unconfirmed_transcript | tec |
| -253348 | enst00000561896 | sg00000102854 | msln-203 | 16 | 765784 | 768865 | + | mRNA | protein_coding |
| -253400 | enst00000566269 | sg00000102854 | msln-206 | 16 | 765732 | 768798 | + | mRNA | protein_coding |
| 256290 | enst00000562876 | sg00000261564 | ac120498.7-201 | 16 | 1273751 | 1276522 | - | pseudogenic_transcript | unprocessed_pseudogene |
| -256608 | enst00000569566 | sg00000102854 | msln-208 | 16 | 762524 | 765036 | + | mRNA | protein_coding |
| -258034 | enst00000563651 | sg00000102854 | msln-204 | 16 | 761098 | 766429 | + | mRNA | protein_coding |
| -258043 | enst00000382862 | sg00000102854 | msln-201 | 16 | 761089 | 768861 | + | mRNA | protein_coding |
| -258365 | enst00000566549 | sg00000102854 | msln-207 | 16 | 760767 | 768865 | + | mRNA | protein_coding |
| -258370 | enst00000563941 | sg00000102854 | msln-205 | 16 | 760762 | 768862 | + | mRNA | protein_coding |
| -258398 | enst00000545450 | sg00000102854 | msln-202 | 16 | 760734 | 768862 | + | mRNA | protein_coding |
| 260312 | enst00000561757 | sg00000260991 | ac120498.5-201 | 16 | 1280161 | 1280544 | - | pseudogenic_transcript | unprocessed_pseudogene |
| 268605 | enst00000561760 | sg00000260284 | tpsp2-201 | 16 | 1286351 | 1288837 | - | pseudogenic_transcript | unprocessed_pseudogene |
| -277803 | enst00000566614 | sg00000103245 | ciao3-213 | 16 | 734845 | 741329 | - | mRNA | protein_coding |
| -278117 | enst00000570066 | sg00000103245 | ciao3-220 | 16 | 736368 | 741015 | - | mRNA | nonsense_mediated_decay |
| -278135 | enst00000565341 | sg00000103245 | ciao3-210 | 16 | 733702 | 740997 | - | lnc_RNA | retained_intron |
| -278135 | enst00000565065 | sg00000103245 | ciao3-209 | 16 | 734771 | 740997 | - | mRNA | nonsense_mediated_decay |
| -278135 | enst00000565425 | sg00000103245 | ciao3-211 | 16 | 729809 | 740997 | - | mRNA | nonsense_mediated_decay |
| -278135 | enst00000562752 | sg00000103245 | ciao3-204 | 16 | 733841 | 740997 | - | lnc_RNA | retained_intron |
| -278135 | enst00000565693 | sg00000103245 | ciao3-212 | 16 | 737981 | 740997 | - | lnc_RNA | processed_transcript |
| -278135 | enst00000567172 | sg00000103245 | ciao3-215 | 16 | 739318 | 740997 | - | lnc_RNA | processed_transcript |
| -278135 | enst00000251588 | sg00000103245 | ciao3-201 | 16 | 729765 | 740997 | - | mRNA | protein_coding |
| -278135 | enst00000567455 | sg00000103245 | ciao3-217 | 16 | 736994 | 740997 | - | lnc_RNA | processed_transcript |
| -278144 | enst00000570289 | sg00000103245 | ciao3-221 | 16 | 736265 | 740988 | - | mRNA | nonsense_mediated_decay |
| -278198 | enst00000540986 | sg00000103245 | ciao3-202 | 16 | 729766 | 740934 | - | mRNA | protein_coding |
| 278934 | enst00000561649 | sg00000260710 | ac120498.4-201 | 16 | 1294551 | 1299166 | - | lnc_RNA | lncrna |
| -281243 | enst00000568545 | sg00000103245 | ciao3-218 | 16 | 729760 | 737889 | - | mRNA | protein_coding |
| -281377 | enst00000562421 | sg00000103245 | ciao3-203 | 16 | 732332 | 737755 | - | mRNA | protein_coding |
| -281380 | enst00000567403 | sg00000103245 | ciao3-216 | 16 | 734284 | 737752 | - | mRNA | protein_coding |
| -281668 | enst00000563534 | sg00000103245 | ciao3-207 | 16 | 734715 | 737464 | - | lnc_RNA | processed_transcript |
| -282762 | enst00000569759 | sg00000103245 | ciao3-219 | 16 | 734078 | 736370 | - | lnc_RNA | processed_transcript |
| -284894 | enst00000562862 | sg00000103245 | ciao3-205 | 16 | 730105 | 734238 | - | lnc_RNA | processed_transcript |
| -285798 | enst00000566650 | sg00000103245 | ciao3-214 | 16 | 729766 | 733334 | - | lnc_RNA | retained_intron |
| -286077 | enst00000569604 | sg00000103253 | haghl-219 | 16 | 733055 | 735525 | + | lnc_RNA | processed_transcript |
| -286232 | enst00000563051 | sg00000103245 | ciao3-206 | 16 | 729771 | 732900 | - | lnc_RNA | retained_intron |
| -286232 | enst00000564285 | sg00000103245 | ciao3-208 | 16 | 730202 | 732900 | - | lnc_RNA | retained_intron |
| 288648 | enst00000355803 | sg00000103275 | ube2i-202 | 16 | 1308880 | 1327018 | + | mRNA | protein_coding |
| 288921 | enst00000325437 | sg00000103275 | ube2i-201 | 16 | 1309153 | 1327018 | + | mRNA | protein_coding |
| 289181 | enst00000339021 | sg00000274751 | ac120498.9-201 | 16 | 1305547 | 1309413 | - | lnc_RNA | lncrna |
| 289403 | enst00000397515 | sg00000103275 | ube2i-204 | 16 | 1309635 | 1327018 | + | mRNA | protein_coding |
| 289404 | enst00000397514 | sg00000103275 | ube2i-203 | 16 | 1309636 | 1327017 | + | mRNA | protein_coding |
| 289404 | enst00000473256 | sg00000103275 | ube2i-208 | 16 | 1309636 | 1317125 | + | lnc_RNA | retained_intron |
| 289416 | enst00000568288 | sg00000103275 | ube2i-218 | 16 | 1309648 | 1324753 | + | lnc_RNA | processed_transcript |
| 289424 | enst00000567383 | sg00000103275 | ube2i-216 | 16 | 1309656 | 1314314 | + | mRNA | protein_coding |
| 289446 | enst00000403747 | sg00000103275 | ube2i-206 | 16 | 1309678 | 1325214 | + | mRNA | protein_coding |
| 289467 | enst00000568209 | sg00000103275 | ube2i-217 | 16 | 1309699 | 1320210 | + | lnc_RNA | processed_transcript |
| 289526 | enst00000562482 | sg00000103275 | ube2i-210 | 16 | 1309758 | 1314934 | + | lnc_RNA | retained_intron |
| 289571 | enst00000566587 | sg00000103275 | ube2i-213 | 16 | 1309803 | 1324952 | + | mRNA | protein_coding |
| -290560 | enst00000569385 | sg00000103253 | haghl-218 | 16 | 728572 | 729313 | + | mRNA | nonsense_mediated_decay |
| -290618 | enst00000563156 | sg00000103253 | haghl-210 | 16 | 728514 | 733847 | + | lnc_RNA | processed_transcript |
| -290621 | enst00000647875 | sg00000103253 | haghl-220 | 16 | 728511 | 735353 | + | lnc_RNA | processed_transcript |
| -290780 | enst00000561561 | sg00000103253 | haghl-206 | 16 | 728352 | 729087 | + | mRNA | nonsense_mediated_decay |
| -291393 | enst00000563792 | sg00000103253 | haghl-211 | 16 | 727739 | 728399 | + | mRNA | protein_coding |
| 291639 | enst00000406620 | sg00000103275 | ube2i-207 | 16 | 1311871 | 1325350 | + | mRNA | protein_coding |
| -291727 | enst00000389701 | sg00000103253 | haghl-202 | 16 | 727405 | 729715 | + | lnc_RNA | retained_intron |
| -291786 | enst00000568141 | sg00000103253 | haghl-216 | 16 | 727346 | 728603 | + | mRNA | protein_coding |
| -291814 | enst00000567696 | sg00000103253 | haghl-215 | 16 | 727318 | 729715 | + | lnc_RNA | retained_intron |
| -291814 | enst00000569143 | sg00000103253 | haghl-217 | 16 | 727318 | 728166 | + | lnc_RNA | retained_intron |
| -291839 | enst00000567414 | sg00000103253 | haghl-214 | 16 | 727293 | 728624 | + | mRNA | protein_coding |
| -291857 | enst00000561750 | sg00000103253 | haghl-207 | 16 | 727275 | 728532 | + | lnc_RNA | retained_intron |
| -291861 | enst00000389703 | sg00000103253 | haghl-203 | 16 | 727271 | 729715 | + | mRNA | protein_coding |
| -291870 | enst00000564545 | sg00000103253 | haghl-213 | 16 | 727262 | 728985 | + | mRNA | protein_coding |
| -291886 | enst00000561546 | sg00000103253 | haghl-205 | 16 | 727246 | 729185 | + | mRNA | protein_coding |
| 291953 | enst00000562470 | sg00000103275 | ube2i-209 | 16 | 1312185 | 1314033 | + | mRNA | protein_coding |
| -292013 | enst00000562141 | sg00000103253 | haghl-208 | 16 | 727119 | 728895 | + | mRNA | protein_coding |
| -292026 | enst00000564537 | sg00000103253 | haghl-212 | 16 | 727106 | 729715 | + | mRNA | protein_coding |
| -292026 | enst00000562187 | sg00000103253 | haghl-209 | 16 | 727106 | 727549 | + | mRNA | protein_coding |
| -292174 | enst00000341413 | sg00000103253 | haghl-201 | 16 | 726958 | 729715 | + | mRNA | protein_coding |
| -292178 | enst00000471861 | sg00000162004 | ccdc78-208 | 16 | 725001 | 726954 | - | lnc_RNA | retained_intron |
| -292196 | enst00000549114 | sg00000103253 | haghl-204 | 16 | 726936 | 729733 | + | mRNA | protein_coding |
| -292252 | enst00000466708 | sg00000162004 | ccdc78-207 | 16 | 722588 | 726880 | - | lnc_RNA | retained_intron |
| -292264 | enst00000474647 | sg00000162004 | ccdc78-209 | 16 | 725123 | 726868 | - | lnc_RNA | retained_intron |
| -292286 | enst00000423653 | sg00000162004 | ccdc78-203 | 16 | 724927 | 726846 | - | mRNA | protein_coding |
| -292659 | enst00000293889 | sg00000162004 | ccdc78-201 | 16 | 722582 | 726473 | - | mRNA | protein_coding |
| -292674 | enst00000650995 | sg00000162004 | ccdc78-217 | 16 | 725794 | 726458 | - | mRNA | protein_coding |
| -292676 | enst00000482878 | sg00000162004 | ccdc78-213 | 16 | 722582 | 726456 | - | lnc_RNA | retained_intron |
| -292676 | enst00000345165 | sg00000162004 | ccdc78-202 | 16 | 722582 | 726456 | - | mRNA | protein_coding |
| -292688 | enst00000439619 | sg00000162004 | ccdc78-204 | 16 | 724550 | 726444 | - | lnc_RNA | retained_intron |
| -292689 | enst00000481804 | sg00000162004 | ccdc78-211 | 16 | 722588 | 726443 | - | lnc_RNA | retained_intron |
| -292689 | enst00000478979 | sg00000162004 | ccdc78-210 | 16 | 722583 | 726443 | - | lnc_RNA | retained_intron |
| -292695 | enst00000538176 | sg00000162004 | ccdc78-215 | 16 | 724542 | 726437 | - | lnc_RNA | retained_intron |
| -292702 | enst00000463539 | sg00000162004 | ccdc78-206 | 16 | 722582 | 726430 | - | lnc_RNA | retained_intron |
| -292703 | enst00000485091 | sg00000162004 | ccdc78-214 | 16 | 722582 | 726429 | - | lnc_RNA | retained_intron |
| -292765 | enst00000460023 | sg00000162004 | ccdc78-205 | 16 | 724907 | 726367 | - | lnc_RNA | retained_intron |
| -293277 | enst00000544996 | sg00000162004 | ccdc78-216 | 16 | 724984 | 725855 | - | lnc_RNA | retained_intron |
| 293328 | enst00000567074 | sg00000103275 | ube2i-215 | 16 | 1313560 | 1320517 | + | mRNA | protein_coding |
| 293763 | enst00000402301 | sg00000103275 | ube2i-205 | 16 | 1313995 | 1321776 | + | mRNA | protein_coding |
| 293813 | enst00000566775 | sg00000103275 | ube2i-214 | 16 | 1314045 | 1320199 | + | mRNA | nonsense_mediated_decay |
| 294317 | enst00000566159 | sg00000103275 | ube2i-212 | 16 | 1314549 | 1317190 | + | lnc_RNA | retained_intron |
| -294497 | enst00000482152 | sg00000162004 | ccdc78-212 | 16 | 722625 | 724635 | - | lnc_RNA | retained_intron |
| 295093 | enst00000564143 | sg00000103275 | ube2i-211 | 16 | 1315325 | 1317125 | + | lnc_RNA | retained_intron |
| -297190 | enst00000570237 | sg00000103254 | antkmt-208 | 16 | 721942 | 722590 | + | lnc_RNA | retained_intron |
| -297460 | enst00000568916 | sg00000103254 | antkmt-206 | 16 | 721672 | 722590 | + | mRNA | protein_coding |
| -297907 | enst00000566437 | sg00000103254 | antkmt-204 | 16 | 721225 | 722508 | + | lnc_RNA | retained_intron |
| -297986 | enst00000564640 | sg00000103254 | antkmt-203 | 16 | 721146 | 722312 | + | lnc_RNA | retained_intron |
| -297986 | enst00000569529 | sg00000103254 | antkmt-207 | 16 | 721146 | 722590 | + | mRNA | protein_coding |
| -297990 | enst00000219535 | sg00000103254 | antkmt-201 | 16 | 721142 | 722573 | + | mRNA | protein_coding |
| -298035 | enst00000564000 | sg00000103254 | antkmt-202 | 16 | 721097 | 722585 | + | mRNA | protein_coding |
| -298551 | enst00000566525 | sg00000103254 | antkmt-205 | 16 | 720581 | 722589 | + | lnc_RNA | retained_intron |
| 299649 | enst00000568989 | sg00000103275 | ube2i-219 | 16 | 1319881 | 1324744 | + | lnc_RNA | retained_intron |
| -302558 | enst00000568415 | sg00000103260 | metrn-205 | 16 | 716574 | 717480 | + | mRNA | protein_coding |
| 302595 | enst00000568106 | sg00000261505 | al031714.1-202 | 16 | 1319255 | 1322827 | - | lnc_RNA | lncrna |
| 302613 | enst00000567829 | sg00000261505 | al031714.1-201 | 16 | 1317891 | 1322845 | - | lnc_RNA | lncrna |
| -302705 | enst00000564661 | sg00000103260 | metrn-202 | 16 | 716427 | 717817 | + | lnc_RNA | retained_intron |
| -303491 | enst00000567076 | sg00000103260 | metrn-203 | 16 | 715641 | 717477 | + | mRNA | protein_coding |
| -303794 | enst00000219542 | sg00000103260 | metrn-201 | 16 | 715338 | 717390 | + | mRNA | protein_coding |
| -303895 | enst00000570132 | sg00000103260 | metrn-206 | 16 | 715237 | 717247 | + | mRNA | nonsense_mediated_decay |
| -304014 | enst00000568223 | sg00000103260 | metrn-204 | 16 | 715118 | 719655 | + | mRNA | protein_coding |
| -307855 | enst00000567096 | sg00000259840 | z97653.1-201 | 16 | 710746 | 711277 | - | lnc_RNA | lncrna |
| 308846 | enst00000402520 | sg00000219274 | rps20p2-201 | 16 | 1329078 | 1329777 | + | pseudogenic_transcript | processed_pseudogene |
| -311482 | enst00000623057 | sg00000279255 | z97653.2-201 | 16 | 707650 | 709067 | + | unconfirmed_transcript | tec |
| -313324 | enst00000324361 | sg00000127585 | fbxl16-201 | 16 | 692507 | 705808 | - | mRNA | protein_coding |
| -313331 | enst00000397621 | sg00000127585 | fbxl16-202 | 16 | 692500 | 705801 | - | mRNA | protein_coding |
| 313369 | enst00000426824 | sg00000007516 | baiap3-204 | 16 | 1333601 | 1348794 | + | mRNA | protein_coding |
| 313406 | enst00000565665 | sg00000007516 | baiap3-209 | 16 | 1333638 | 1339386 | + | lnc_RNA | retained_intron |
| 313411 | enst00000397488 | sg00000007516 | baiap3-202 | 16 | 1333643 | 1349438 | + | mRNA | protein_coding |
| 313413 | enst00000562208 | sg00000007516 | baiap3-207 | 16 | 1333645 | 1348640 | + | mRNA | protein_coding |
| 313413 | enst00000568887 | sg00000007516 | baiap3-215 | 16 | 1333645 | 1348755 | + | mRNA | protein_coding |
| 314272 | enst00000567825 | sg00000007516 | baiap3-213 | 16 | 1334504 | 1342421 | + | lnc_RNA | retained_intron |
| 314272 | enst00000324385 | sg00000007516 | baiap3-201 | 16 | 1334504 | 1349438 | + | mRNA | protein_coding |
| 314272 | enst00000628027 | sg00000007516 | baiap3-216 | 16 | 1334504 | 1349441 | + | mRNA | protein_coding |
| 315965 | enst00000421665 | sg00000007516 | baiap3-203 | 16 | 1336197 | 1348793 | + | mRNA | protein_coding |
| 323086 | enst00000568198 | sg00000007516 | baiap3-214 | 16 | 1343318 | 1345073 | + | lnc_RNA | retained_intron |
| -323107 | enst00000562563 | sg00000127585 | fbxl16-203 | 16 | 692927 | 696025 | - | mRNA | protein_coding |
| -323600 | enst00000562648 | sg00000127585 | fbxl16-205 | 16 | 692498 | 695532 | - | lnc_RNA | retained_intron |
| -323869 | enst00000562585 | sg00000127585 | fbxl16-204 | 16 | 694658 | 695263 | - | lnc_RNA | processed_transcript |
| 324436 | enst00000566162 | sg00000007516 | baiap3-210 | 16 | 1344668 | 1349438 | + | mRNA | protein_coding |
| 325186 | enst00000561602 | sg00000007516 | baiap3-205 | 16 | 1345418 | 1346225 | + | lnc_RNA | retained_intron |
| 325777 | enst00000561793 | sg00000007516 | baiap3-206 | 16 | 1346009 | 1347610 | + | mRNA | protein_coding |
| 326006 | enst00000564213 | sg00000007516 | baiap3-208 | 16 | 1346238 | 1347358 | + | lnc_RNA | processed_transcript |
| 326227 | enst00000567203 | sg00000007516 | baiap3-212 | 16 | 1346459 | 1347091 | + | lnc_RNA | retained_intron |
| 326487 | enst00000566389 | sg00000007516 | baiap3-211 | 16 | 1346719 | 1348301 | + | lnc_RNA | retained_intron |
| -328688 | enst00000248142 | sg00000127580 | wdr24-201 | 16 | 684734 | 690444 | - | mRNA | protein_coding |
| -328734 | enst00000293883 | sg00000127580 | wdr24-202 | 16 | 684622 | 690398 | - | mRNA | protein_coding |
| -328885 | enst00000647644 | sg00000127580 | wdr24-204 | 16 | 684633 | 690247 | - | mRNA | protein_coding |
| -329638 | enst00000566927 | sg00000261659 | z92544.2-202 | 16 | 689494 | 692554 | + | lnc_RNA | lncrna |
| -330131 | enst00000575305 | sg00000261659 | z92544.2-201 | 16 | 689001 | 692413 | + | lnc_RNA | retained_intron |
| 331241 | enst00000566296 | sg00000007520 | tsr3-202 | 16 | 1349426 | 1351473 | - | mRNA | nonsense_mediated_decay |
| 331646 | enst00000007390 | sg00000007520 | tsr3-201 | 16 | 1349240 | 1351878 | - | mRNA | protein_coding |
| 331699 | enst00000526820 | sg00000090581 | gnptg-202 | 16 | 1351931 | 1362124 | + | mRNA | nonsense_mediated_decay |
| 331699 | enst00000204679 | sg00000090581 | gnptg-201 | 16 | 1351931 | 1364113 | + | mRNA | protein_coding |
| 331712 | enst00000527876 | sg00000090581 | gnptg-206 | 16 | 1351944 | 1358417 | + | mRNA | nonsense_mediated_decay |
| 331714 | enst00000529957 | sg00000090581 | gnptg-208 | 16 | 1351946 | 1362906 | + | lnc_RNA | retained_intron |
| 331716 | enst00000534197 | sg00000090581 | gnptg-209 | 16 | 1351948 | 1357844 | + | lnc_RNA | retained_intron |
| 331719 | enst00000527137 | sg00000090581 | gnptg-204 | 16 | 1351951 | 1352499 | + | mRNA | protein_coding |
| 331722 | enst00000527168 | sg00000090581 | gnptg-205 | 16 | 1351954 | 1363323 | + | lnc_RNA | retained_intron |
| 331751 | enst00000529110 | sg00000090581 | gnptg-207 | 16 | 1351983 | 1362279 | + | mRNA | protein_coding |
| -332203 | enst00000567014 | sg00000127580 | wdr24-203 | 16 | 685450 | 686929 | - | lnc_RNA | retained_intron |
| -334604 | enst00000567120 | sg00000161999 | jmjd8-209 | 16 | 681671 | 684528 | - | lnc_RNA | retained_intron |
| -334750 | enst00000412368 | sg00000161999 | jmjd8-201 | 16 | 682794 | 684382 | - | mRNA | protein_coding |
| -334769 | enst00000562824 | sg00000161999 | jmjd8-203 | 16 | 682528 | 684363 | - | mRNA | protein_coding |
| -334786 | enst00000562111 | sg00000161999 | jmjd8-202 | 16 | 682658 | 684346 | - | mRNA | protein_coding |
| -334788 | enst00000568689 | sg00000161999 | jmjd8-212 | 16 | 681699 | 684344 | - | lnc_RNA | retained_intron |
| -334796 | enst00000565302 | sg00000161999 | jmjd8-207 | 16 | 681698 | 684336 | - | lnc_RNA | retained_intron |
| -334798 | enst00000609261 | sg00000161999 | jmjd8-216 | 16 | 681670 | 684334 | - | mRNA | protein_coding |
| -334801 | enst00000569396 | sg00000161999 | jmjd8-213 | 16 | 683185 | 684331 | - | lnc_RNA | retained_intron |
| -334812 | enst00000569441 | sg00000161999 | jmjd8-214 | 16 | 682406 | 684320 | - | lnc_RNA | retained_intron |
| -334818 | enst00000566199 | sg00000161999 | jmjd8-208 | 16 | 683343 | 684314 | - | lnc_RNA | retained_intron |
| -334829 | enst00000567901 | sg00000161999 | jmjd8-210 | 16 | 683355 | 684303 | - | lnc_RNA | retained_intron |
| -334977 | enst00000563088 | sg00000161999 | jmjd8-204 | 16 | 682543 | 684155 | - | lnc_RNA | retained_intron |
| -335031 | enst00000570037 | sg00000161999 | jmjd8-215 | 16 | 682658 | 684101 | - | lnc_RNA | retained_intron |
| -335532 | enst00000565258 | sg00000161999 | jmjd8-206 | 16 | 682772 | 683600 | - | mRNA | nonsense_mediated_decay |
| -335546 | enst00000564436 | sg00000161999 | jmjd8-205 | 16 | 682575 | 683586 | - | lnc_RNA | retained_intron |
| -336026 | enst00000568313 | sg00000161999 | jmjd8-211 | 16 | 682074 | 683106 | - | lnc_RNA | retained_intron |
| -336716 | enst00000565813 | sg00000103266 | stub1-206 | 16 | 682416 | 682870 | + | mRNA | nonsense_mediated_decay |
| -337651 | enst00000564316 | sg00000103266 | stub1-203 | 16 | 681481 | 682746 | + | mRNA | protein_coding |
| -337856 | enst00000566408 | sg00000103266 | stub1-208 | 16 | 681276 | 682462 | + | mRNA | protein_coding |
| -337908 | enst00000566181 | sg00000103266 | stub1-207 | 16 | 681224 | 682213 | + | lnc_RNA | processed_transcript |
| -338095 | enst00000564370 | sg00000103266 | stub1-204 | 16 | 681037 | 682496 | + | mRNA | protein_coding |
| -338693 | enst00000567790 | sg00000103266 | stub1-210 | 16 | 680439 | 681390 | + | lnc_RNA | retained_intron |
| -338702 | enst00000563505 | sg00000103266 | stub1-202 | 16 | 680430 | 682066 | + | lnc_RNA | retained_intron |
| -338708 | enst00000567173 | sg00000103266 | stub1-209 | 16 | 680424 | 682193 | + | mRNA | protein_coding |
| -338713 | enst00000569248 | sg00000103266 | stub1-211 | 16 | 680419 | 682717 | + | lnc_RNA | retained_intron |
| -338722 | enst00000219548 | sg00000103266 | stub1-201 | 16 | 680410 | 682801 | + | mRNA | protein_coding |
| -338908 | enst00000565677 | sg00000103266 | stub1-205 | 16 | 680224 | 682746 | + | mRNA | protein_coding |
| -339355 | enst00000567091 | sg00000260394 | z92544.1-201 | 16 | 678504 | 679777 | - | lnc_RNA | lncrna |
| -339395 | enst00000571933 | sg00000260394 | z92544.1-202 | 16 | 678518 | 679737 | - | lnc_RNA | lncrna |
| 340391 | enst00000527076 | sg00000090581 | gnptg-203 | 16 | 1360623 | 1363350 | + | lnc_RNA | retained_intron |
| -340487 | enst00000624747 | sg00000279441 | z92544.3-201 | 16 | 678645 | 679061 | + | unconfirmed_transcript | tec |
| 341173 | enst00000569831 | sg00000260425 | al031709.1-201 | 16 | 1358900 | 1361405 | - | lnc_RNA | lncrna |
| -343057 | enst00000219551 | sg00000103269 | rhbdl1-201 | 16 | 676075 | 678268 | + | mRNA | protein_coding |
| -343410 | enst00000450775 | sg00000103269 | rhbdl1-203 | 16 | 675722 | 678267 | + | lnc_RNA | retained_intron |
| -343449 | enst00000561556 | sg00000103269 | rhbdl1-204 | 16 | 675683 | 677843 | + | mRNA | protein_coding |
| -343466 | enst00000352681 | sg00000103269 | rhbdl1-202 | 16 | 675666 | 678268 | + | mRNA | protein_coding |
| 345916 | enst00000562537 | sg00000059145 | unkl-216 | 16 | 1364174 | 1366148 | - | lnc_RNA | processed_transcript |
| -346340 | enst00000562957 | sg00000140983 | rhot2-208 | 16 | 672792 | 673537 | + | lnc_RNA | retained_intron |
| -346383 | enst00000569197 | sg00000140983 | rhot2-220 | 16 | 672749 | 674165 | + | mRNA | protein_coding |
| -346464 | enst00000564659 | sg00000140983 | rhot2-212 | 16 | 672668 | 673972 | + | lnc_RNA | retained_intron |
| -347215 | enst00000561711 | sg00000140983 | rhot2-202 | 16 | 671917 | 672817 | + | lnc_RNA | retained_intron |
| 347971 | enst00000511095 | sg00000059145 | unkl-212 | 16 | 1366278 | 1368203 | - | lnc_RNA | retained_intron |
| -348050 | enst00000565004 | sg00000140983 | rhot2-213 | 16 | 671082 | 673057 | + | lnc_RNA | retained_intron |
| -348604 | enst00000567589 | sg00000140983 | rhot2-217 | 16 | 670528 | 671312 | + | lnc_RNA | retained_intron |
| -348677 | enst00000569358 | sg00000140983 | rhot2-221 | 16 | 670455 | 673059 | + | lnc_RNA | retained_intron |
| -350474 | enst00000568636 | sg00000140983 | rhot2-218 | 16 | 668658 | 674125 | + | lnc_RNA | retained_intron |
| -350572 | enst00000566965 | sg00000140983 | rhot2-215 | 16 | 668560 | 671785 | + | lnc_RNA | retained_intron |
| -350779 | enst00000569943 | sg00000140983 | rhot2-224 | 16 | 668353 | 670959 | + | lnc_RNA | processed_transcript |
| -350923 | enst00000561929 | sg00000140983 | rhot2-203 | 16 | 668209 | 670940 | + | mRNA | protein_coding |
| -350945 | enst00000562333 | sg00000140983 | rhot2-205 | 16 | 668187 | 671993 | + | mRNA | nonsense_mediated_decay |
| -350950 | enst00000562598 | sg00000140983 | rhot2-206 | 16 | 668182 | 670538 | + | lnc_RNA | retained_intron |
| -350952 | enst00000602564 | sg00000140983 | rhot2-227 | 16 | 668180 | 673308 | + | lnc_RNA | retained_intron |
| -350954 | enst00000568950 | sg00000140983 | rhot2-219 | 16 | 668178 | 672297 | + | lnc_RNA | retained_intron |
| -350970 | enst00000567017 | sg00000140983 | rhot2-216 | 16 | 668162 | 671933 | + | lnc_RNA | retained_intron |
| -350979 | enst00000570280 | sg00000140983 | rhot2-226 | 16 | 668153 | 671131 | + | mRNA | nonsense_mediated_decay |
| -350981 | enst00000563637 | sg00000140983 | rhot2-210 | 16 | 668151 | 671934 | + | mRNA | nonsense_mediated_decay |
| -350981 | enst00000566214 | sg00000140983 | rhot2-214 | 16 | 668151 | 670773 | + | mRNA | nonsense_mediated_decay |
| -350997 | enst00000569675 | sg00000140983 | rhot2-222 | 16 | 668135 | 674174 | + | lnc_RNA | retained_intron |
| -351000 | enst00000315082 | sg00000140983 | rhot2-201 | 16 | 668132 | 674171 | + | mRNA | protein_coding |
| -351000 | enst00000569706 | sg00000140983 | rhot2-223 | 16 | 668132 | 668881 | + | lnc_RNA | retained_intron |
| -351008 | enst00000570092 | sg00000140983 | rhot2-225 | 16 | 668124 | 670507 | + | lnc_RNA | retained_intron |
| -351020 | enst00000562708 | sg00000140983 | rhot2-207 | 16 | 668112 | 670525 | + | lnc_RNA | retained_intron |
| -351026 | enst00000563134 | sg00000140983 | rhot2-209 | 16 | 668106 | 670993 | + | mRNA | protein_coding |
| -351027 | enst00000561983 | sg00000140983 | rhot2-204 | 16 | 668105 | 671199 | + | mRNA | nonsense_mediated_decay |
| -351027 | enst00000563776 | sg00000140983 | rhot2-211 | 16 | 668105 | 671162 | + | lnc_RNA | retained_intron |
| -352221 | enst00000546896 | sg00000161996 | wdr90-205 | 16 | 666911 | 667830 | + | mRNA | protein_coding |
| -352636 | enst00000551100 | sg00000161996 | wdr90-220 | 16 | 666496 | 667831 | + | mRNA | protein_coding |
| -353258 | enst00000548448 | sg00000161996 | wdr90-210 | 16 | 665874 | 666361 | + | lnc_RNA | retained_intron |
| -353874 | enst00000315764 | sg00000161996 | wdr90-202 | 16 | 665258 | 667830 | + | mRNA | protein_coding |
| -353948 | enst00000547944 | sg00000161996 | wdr90-209 | 16 | 665184 | 667830 | + | mRNA | protein_coding |
| -354144 | enst00000553080 | sg00000161996 | wdr90-225 | 16 | 664988 | 667829 | + | lnc_RNA | retained_intron |
| -355992 | enst00000547543 | sg00000161996 | wdr90-208 | 16 | 663140 | 666745 | + | lnc_RNA | processed_transcript |
| -356857 | enst00000548603 | sg00000161996 | wdr90-211 | 16 | 662275 | 663437 | + | lnc_RNA | processed_transcript |
| -357400 | enst00000546923 | sg00000161996 | wdr90-206 | 16 | 661732 | 662736 | + | lnc_RNA | retained_intron |
| -357544 | enst00000550902 | sg00000161996 | wdr90-219 | 16 | 661588 | 662224 | + | lnc_RNA | retained_intron |
| -358067 | enst00000549024 | sg00000161996 | wdr90-214 | 16 | 661065 | 667829 | + | lnc_RNA | retained_intron |
| 358889 | enst00000513783 | sg00000059145 | unkl-213 | 16 | 1367713 | 1379121 | - | mRNA | protein_coding |
| 358944 | enst00000515195 | sg00000059145 | unkl-214 | 16 | 1370233 | 1379176 | - | lnc_RNA | processed_transcript |
| 359413 | enst00000403703 | sg00000059145 | unkl-207 | 16 | 1363206 | 1379645 | - | mRNA | nonsense_mediated_decay |
| 359448 | enst00000402641 | sg00000059145 | unkl-206 | 16 | 1367292 | 1379680 | - | mRNA | protein_coding |
| 359451 | enst00000248104 | sg00000059145 | unkl-201 | 16 | 1363205 | 1379683 | - | mRNA | protein_coding |
| 359451 | enst00000397464 | sg00000059145 | unkl-205 | 16 | 1364999 | 1379683 | - | mRNA | protein_coding |
| -359887 | enst00000550739 | sg00000161996 | wdr90-218 | 16 | 659245 | 660714 | + | mRNA | protein_coding |
| -360572 | enst00000548844 | sg00000161996 | wdr90-212 | 16 | 658560 | 661075 | + | lnc_RNA | processed_transcript |
| -361274 | enst00000552683 | sg00000161996 | wdr90-222 | 16 | 657858 | 663438 | + | lnc_RNA | retained_intron |
| -362699 | enst00000548859 | sg00000161996 | wdr90-213 | 16 | 656433 | 657357 | + | lnc_RNA | retained_intron |
| -362711 | enst00000552728 | sg00000161996 | wdr90-223 | 16 | 656421 | 667830 | + | mRNA | nonsense_mediated_decay |
| -362857 | enst00000547407 | sg00000161996 | wdr90-207 | 16 | 656275 | 667829 | + | lnc_RNA | retained_intron |
| -362938 | enst00000573609 | sg00000262528 | al022341.2-201 | 16 | 654611 | 656194 | - | lnc_RNA | lncrna |
| -364074 | enst00000546516 | sg00000161996 | wdr90-204 | 16 | 655058 | 663433 | + | lnc_RNA | retained_intron |
| -364074 | enst00000552648 | sg00000161996 | wdr90-221 | 16 | 655058 | 657123 | + | lnc_RNA | processed_transcript |
| -367010 | enst00000550593 | sg00000161996 | wdr90-217 | 16 | 652122 | 653470 | + | lnc_RNA | retained_intron |
| -369767 | enst00000293879 | sg00000161996 | wdr90-201 | 16 | 649365 | 667830 | + | mRNA | protein_coding |
| -369779 | enst00000549648 | sg00000161996 | wdr90-216 | 16 | 649353 | 656201 | + | lnc_RNA | retained_intron |
| -369779 | enst00000420061 | sg00000161996 | wdr90-203 | 16 | 649353 | 656201 | + | lnc_RNA | retained_intron |
| -369807 | enst00000549091 | sg00000161996 | wdr90-215 | 16 | 649325 | 667833 | + | mRNA | protein_coding |
| -369821 | enst00000552943 | sg00000161996 | wdr90-224 | 16 | 649311 | 661075 | + | lnc_RNA | retained_intron |
| -369932 | enst00000455294 | sg00000228201 | al022341.1-201 | 16 | 648473 | 649200 | - | lnc_RNA | lncrna |
| -372385 | enst00000575894 | sg00000172366 | mcrip2-204 | 16 | 646747 | 648474 | + | lnc_RNA | retained_intron |
| -374006 | enst00000619674 | sg00000172366 | mcrip2-209 | 16 | 645126 | 648474 | + | lnc_RNA | retained_intron |
| -376649 | enst00000620462 | sg00000172366 | mcrip2-210 | 16 | 642483 | 648446 | + | lnc_RNA | retained_intron |
| -376681 | enst00000615744 | sg00000172366 | mcrip2-206 | 16 | 642451 | 648437 | + | lnc_RNA | processed_transcript |
| -377203 | enst00000474840 | sg00000172366 | mcrip2-202 | 16 | 641929 | 648474 | + | mRNA | nonsense_mediated_decay |
| -377283 | enst00000629534 | sg00000172366 | mcrip2-211 | 16 | 641849 | 646487 | + | mRNA | protein_coding |
| -377286 | enst00000491999 | sg00000172366 | mcrip2-203 | 16 | 641846 | 648474 | + | mRNA | nonsense_mediated_decay |
| -377304 | enst00000307650 | sg00000172366 | mcrip2-201 | 16 | 641828 | 648474 | + | mRNA | protein_coding |
| 379276 | enst00000509981 | sg00000059145 | unkl-211 | 16 | 1397045 | 1399508 | - | lnc_RNA | retained_intron |
| -382116 | enst00000619114 | sg00000172366 | mcrip2-207 | 16 | 637016 | 638587 | + | lnc_RNA | processed_transcript |
| -382229 | enst00000611328 | sg00000172366 | mcrip2-205 | 16 | 636903 | 648474 | + | lnc_RNA | processed_transcript |
| -382315 | enst00000619377 | sg00000172366 | mcrip2-208 | 16 | 636817 | 638620 | + | lnc_RNA | processed_transcript |
| -382766 | enst00000614890 | sg00000130731 | mettl26-214 | 16 | 634427 | 636366 | - | mRNA | protein_coding |
| -382774 | enst00000568830 | sg00000130731 | mettl26-213 | 16 | 634949 | 636358 | - | mRNA | protein_coding |
| -382781 | enst00000397664 | sg00000130731 | mettl26-203 | 16 | 634438 | 636351 | - | mRNA | protein_coding |
| -382790 | enst00000338401 | sg00000130731 | mettl26-202 | 16 | 634429 | 636342 | - | mRNA | protein_coding |
| -382801 | enst00000568077 | sg00000130731 | mettl26-211 | 16 | 634502 | 636331 | - | mRNA | nonsense_mediated_decay |
| -382822 | enst00000448973 | sg00000130731 | mettl26-206 | 16 | 634436 | 636310 | - | lnc_RNA | retained_intron |
| -382827 | enst00000301686 | sg00000130731 | mettl26-201 | 16 | 634430 | 636305 | - | mRNA | protein_coding |
| -382830 | enst00000397666 | sg00000130731 | mettl26-205 | 16 | 634430 | 636302 | - | mRNA | protein_coding |
| -382842 | enst00000397665 | sg00000130731 | mettl26-204 | 16 | 634526 | 636290 | - | mRNA | protein_coding |
| -382854 | enst00000564039 | sg00000130731 | mettl26-208 | 16 | 634626 | 636278 | - | mRNA | nonsense_mediated_decay |
| -382865 | enst00000565799 | sg00000130731 | mettl26-210 | 16 | 635281 | 636267 | - | lnc_RNA | retained_intron |
| -382872 | enst00000565163 | sg00000130731 | mettl26-209 | 16 | 634737 | 636260 | - | mRNA | protein_coding |
| -382893 | enst00000456420 | sg00000130731 | mettl26-207 | 16 | 634513 | 636239 | - | mRNA | nonsense_mediated_decay |
| -382897 | enst00000568773 | sg00000130731 | mettl26-212 | 16 | 634664 | 636235 | - | mRNA | protein_coding |
| 382958 | enst00000502438 | sg00000059145 | unkl-208 | 16 | 1399140 | 1403190 | - | lnc_RNA | retained_intron |
| 387109 | enst00000561783 | sg00000059145 | unkl-215 | 16 | 1403237 | 1407341 | - | lnc_RNA | processed_transcript |
| -388147 | enst00000319070 | sg00000127578 | wfikkn1-201 | 16 | 630985 | 634117 | + | mRNA | protein_coding |
| 388602 | enst00000568554 | sg00000260132 | al032819.1-201 | 16 | 1408834 | 1412248 | + | lnc_RNA | lncrna |
| -389893 | enst00000573440 | sg00000127578 | wfikkn1-202 | 16 | 629239 | 634116 | + | lnc_RNA | retained_intron |
| -393518 | enst00000561781 | sg00000197562 | rab40c-206 | 16 | 625614 | 629272 | + | lnc_RNA | retained_intron |
| 393846 | enst00000566707 | sg00000059145 | unkl-217 | 16 | 1403208 | 1414078 | - | lnc_RNA | retained_intron |
| 394459 | enst00000508903 | sg00000059145 | unkl-210 | 16 | 1365012 | 1414691 | - | mRNA | protein_coding |
| 394463 | enst00000503648 | sg00000059145 | unkl-209 | 16 | 1401337 | 1414695 | - | lnc_RNA | processed_transcript |
| 394465 | enst00000382757 | sg00000059145 | unkl-203 | 16 | 1394131 | 1414697 | - | mRNA | nonsense_mediated_decay |
| 394488 | enst00000389221 | sg00000059145 | unkl-204 | 16 | 1363205 | 1414720 | - | mRNA | protein_coding |
| 394519 | enst00000301712 | sg00000059145 | unkl-202 | 16 | 1398305 | 1414751 | - | mRNA | protein_coding |
| 400515 | enst00000442039 | sg00000174109 | c16orf91-201 | 16 | 1419752 | 1420747 | - | mRNA | protein_coding |
| 400524 | enst00000563974 | sg00000174109 | c16orf91-202 | 16 | 1419752 | 1420756 | - | lnc_RNA | retained_intron |
| -402487 | enst00000564703 | sg00000197562 | rab40c-208 | 16 | 616645 | 626117 | + | mRNA | protein_coding |
| 410803 | enst00000640283 | sg00000284395 | percc1-201 | 16 | 1431035 | 1433397 | + | mRNA | protein_coding |
| 415076 | enst00000463299 | sg00000197599 | ccdc154-203 | 16 | 1434388 | 1435308 | - | lnc_RNA | retained_intron |
| 416922 | enst00000624543 | sg00000279930 | al032819.2-201 | 16 | 1437154 | 1439315 | + | unconfirmed_transcript | tec |
| 417671 | enst00000483702 | sg00000197599 | ccdc154-204 | 16 | 1434383 | 1437903 | - | mRNA | nonsense_mediated_decay |
| 424257 | enst00000389176 | sg00000197599 | ccdc154-201 | 16 | 1434388 | 1444489 | - | mRNA | protein_coding |
| 424324 | enst00000409671 | sg00000197599 | ccdc154-202 | 16 | 1434388 | 1444556 | - | mRNA | protein_coding |
| 425111 | enst00000566287 | sg00000261641 | al031600.3-201 | 16 | 1445343 | 1446519 | + | lnc_RNA | lncrna |
| 428376 | enst00000567836 | sg00000103249 | clcn7-213 | 16 | 1446643 | 1448608 | - | lnc_RNA | retained_intron |
| -428800 | enst00000563109 | sg00000197562 | rab40c-207 | 16 | 590332 | 627583 | + | mRNA | protein_coding |
| -428836 | enst00000509637 | sg00000197562 | rab40c-202 | 16 | 590296 | 625993 | + | mRNA | nonsense_mediated_decay |
| -428890 | enst00000565511 | sg00000197562 | rab40c-209 | 16 | 590242 | 626083 | + | mRNA | nonsense_mediated_decay |
| 429031 | enst00000567789 | sg00000103249 | clcn7-212 | 16 | 1448292 | 1449263 | - | lnc_RNA | retained_intron |
| -429055 | enst00000538492 | sg00000197562 | rab40c-204 | 16 | 590077 | 629271 | + | mRNA | protein_coding |
| -429064 | enst00000568586 | sg00000197562 | rab40c-211 | 16 | 590068 | 626121 | + | mRNA | protein_coding |
| -429066 | enst00000248139 | sg00000197562 | rab40c-201 | 16 | 590066 | 629268 | + | mRNA | protein_coding |
| -429463 | enst00000566290 | sg00000197562 | rab40c-210 | 16 | 589669 | 627415 | + | mRNA | protein_coding |
| -429463 | enst00000539661 | sg00000197562 | rab40c-205 | 16 | 589669 | 629271 | + | mRNA | protein_coding |
| 429565 | enst00000565092 | sg00000103249 | clcn7-209 | 16 | 1445344 | 1449797 | - | lnc_RNA | retained_intron |
| -429775 | enst00000569575 | sg00000197562 | rab40c-212 | 16 | 589357 | 626026 | + | mRNA | protein_coding |
| -429775 | enst00000535977 | sg00000197562 | rab40c-203 | 16 | 589357 | 629271 | + | mRNA | protein_coding |
| 431528 | enst00000563610 | sg00000260051 | al031600.1-201 | 16 | 1451760 | 1452653 | + | lnc_RNA | lncrna |
| 431737 | enst00000563642 | sg00000103249 | clcn7-205 | 16 | 1444934 | 1451969 | - | lnc_RNA | retained_intron |
| -435548 | enst00000638152 | sg00000007541 | pigq-225 | 16 | 583584 | 583770 | + | lnc_RNA | processed_transcript |
| -436255 | enst00000634341 | sg00000007541 | pigq-216 | 16 | 582877 | 583922 | + | lnc_RNA | retained_intron |
| -436642 | enst00000540548 | sg00000007541 | pigq-214 | 16 | 582490 | 582947 | + | lnc_RNA | processed_transcript |
| -437371 | enst00000476438 | sg00000007541 | pigq-210 | 16 | 581761 | 584108 | + | lnc_RNA | retained_intron |
| 439098 | enst00000564968 | sg00000103249 | clcn7-208 | 16 | 1457329 | 1459330 | - | lnc_RNA | retained_intron |
| 439180 | enst00000563822 | sg00000103249 | clcn7-206 | 16 | 1455492 | 1459412 | - | lnc_RNA | retained_intron |
| -440041 | enst00000540241 | sg00000007541 | pigq-213 | 16 | 579091 | 583223 | + | mRNA | protein_coding |
| -440205 | enst00000480424 | sg00000007541 | pigq-211 | 16 | 578927 | 584108 | + | lnc_RNA | retained_intron |
| -440301 | enst00000635205 | sg00000007541 | pigq-217 | 16 | 578831 | 583455 | + | mRNA | nonsense_mediated_decay |
| -440727 | enst00000420990 | sg00000007541 | pigq-205 | 16 | 578405 | 582647 | + | mRNA | nonsense_mediated_decay |
| -440841 | enst00000635935 | sg00000007541 | pigq-219 | 16 | 578291 | 580777 | + | lnc_RNA | processed_transcript |
| -441072 | enst00000537901 | sg00000007541 | pigq-212 | 16 | 578060 | 578802 | + | lnc_RNA | retained_intron |
| -441231 | enst00000544860 | sg00000007541 | pigq-215 | 16 | 577901 | 578843 | + | lnc_RNA | processed_transcript |
| -443186 | enst00000638143 | sg00000007541 | pigq-224 | 16 | 575946 | 580922 | + | mRNA | nonsense_mediated_decay |
| -444381 | enst00000637468 | sg00000007541 | pigq-222 | 16 | 574751 | 582893 | + | mRNA | nonsense_mediated_decay |
| -444425 | enst00000636005 | sg00000007541 | pigq-220 | 16 | 574707 | 583334 | + | mRNA | nonsense_mediated_decay |
| -444800 | enst00000635909 | sg00000007541 | pigq-218 | 16 | 574332 | 584083 | + | mRNA | nonsense_mediated_decay |
| -446626 | enst00000443147 | sg00000007541 | pigq-208 | 16 | 572506 | 583095 | + | mRNA | nonsense_mediated_decay |
| -448831 | enst00000637701 | sg00000007541 | pigq-223 | 16 | 570301 | 570658 | + | lnc_RNA | processed_transcript |
| -449070 | enst00000470411 | sg00000007541 | pigq-209 | 16 | 570062 | 577217 | + | mRNA | protein_coding |
| -449114 | enst00000026218 | sg00000007541 | pigq-201 | 16 | 570018 | 584109 | + | mRNA | protein_coding |
| -449151 | enst00000636657 | sg00000007541 | pigq-221 | 16 | 569981 | 584094 | + | mRNA | nonsense_mediated_decay |
| -449156 | enst00000422307 | sg00000007541 | pigq-206 | 16 | 569976 | 577234 | + | mRNA | protein_coding |
| -449164 | enst00000439574 | sg00000007541 | pigq-207 | 16 | 569968 | 574409 | + | mRNA | protein_coding |
| -449185 | enst00000321878 | sg00000007541 | pigq-203 | 16 | 569947 | 584136 | + | mRNA | protein_coding |
| -449671 | enst00000635107 | sg00000282907 | z98883.1-202 | 16 | 569461 | 576257 | + | lnc_RNA | lncrna |
| -450295 | enst00000409439 | sg00000282907 | z98883.1-201 | 16 | 568837 | 575903 | + | lnc_RNA | lncrna |
| 451724 | enst00000569851 | sg00000103249 | clcn7-214 | 16 | 1457254 | 1471956 | - | mRNA | protein_coding |
| -452123 | enst00000409527 | sg00000007541 | pigq-204 | 16 | 567009 | 583035 | + | mRNA | protein_coding |
| -452127 | enst00000540585 | sg00000257108 | nhlrc4-202 | 16 | 567005 | 569495 | + | mRNA | protein_coding |
| -452127 | enst00000424439 | sg00000257108 | nhlrc4-201 | 16 | 567005 | 569495 | + | mRNA | protein_coding |
| -452137 | enst00000293874 | sg00000007541 | pigq-202 | 16 | 566995 | 574519 | + | mRNA | protein_coding |
| 452452 | enst00000563223 | sg00000261430 | al031600.2-201 | 16 | 1467673 | 1472684 | - | lnc_RNA | lncrna |
| 454133 | enst00000564568 | sg00000103249 | clcn7-207 | 16 | 1460839 | 1474365 | - | mRNA | protein_coding |
| 454793 | enst00000567139 | sg00000103249 | clcn7-211 | 16 | 1460770 | 1475025 | - | lnc_RNA | retained_intron |
| 454796 | enst00000382745 | sg00000103249 | clcn7-202 | 16 | 1444935 | 1475028 | - | mRNA | protein_coding |
| 454825 | enst00000262318 | sg00000103249 | clcn7-201 | 16 | 1445344 | 1475057 | - | mRNA | protein_coding |
| 454844 | enst00000561665 | sg00000103249 | clcn7-204 | 16 | 1460769 | 1475076 | - | lnc_RNA | retained_intron |
| 454845 | enst00000566812 | sg00000103249 | clcn7-210 | 16 | 1466599 | 1475077 | - | lnc_RNA | processed_transcript |
| 454852 | enst00000448525 | sg00000103249 | clcn7-203 | 16 | 1444936 | 1475084 | - | mRNA | protein_coding |
| 457598 | enst00000407190 | sg00000219027 | rps3ap2-201 | 16 | 1477830 | 1478583 | + | pseudogenic_transcript | processed_pseudogene |
| -458738 | enst00000409413 | sg00000161992 | prr35-201 | 16 | 560394 | 565529 | + | mRNA | protein_coding |
| -465285 | enst00000565879 | sg00000261691 | z97986.1-201 | 16 | 547185 | 553847 | - | lnc_RNA | lncrna |
| -466377 | enst00000566977 | sg00000103326 | capn15-204 | 16 | 552755 | 554636 | + | mRNA | protein_coding |
| -466835 | enst00000565010 | sg00000103326 | capn15-203 | 16 | 552297 | 554636 | + | lnc_RNA | retained_intron |
| 468235 | enst00000293922 | sg00000251692 | ptx4-201 | 16 | 1485939 | 1488467 | - | mRNA | protein_coding |
| 468703 | enst00000447419 | sg00000251692 | ptx4-203 | 16 | 1485886 | 1488935 | - | mRNA | protein_coding |
| 468749 | enst00000440447 | sg00000251692 | ptx4-202 | 16 | 1485886 | 1488981 | - | mRNA | protein_coding |
| 473112 | enst00000497339 | sg00000100726 | telo2-202 | 16 | 1493344 | 1507325 | + | mRNA | nonsense_mediated_decay |
| 473128 | enst00000262319 | sg00000100726 | telo2-201 | 16 | 1493360 | 1510454 | + | mRNA | protein_coding |
| -475855 | enst00000582210 | sg00000266235 | mir3176-201 | 16 | 543277 | 543366 | + | miRNA | mirna |
| -479027 | enst00000637507 | sg00000103326 | capn15-208 | 16 | 540105 | 548031 | + | mRNA | protein_coding |
| 481475 | enst00000564507 | sg00000100726 | telo2-204 | 16 | 1501707 | 1506665 | + | lnc_RNA | processed_transcript |
| 481533 | enst00000567423 | sg00000100726 | telo2-205 | 16 | 1501765 | 1506262 | + | mRNA | protein_coding |
| -482270 | enst00000568402 | sg00000103326 | capn15-206 | 16 | 536862 | 537639 | + | lnc_RNA | processed_transcript |
| 482730 | enst00000567427 | sg00000100726 | telo2-206 | 16 | 1502962 | 1506779 | + | lnc_RNA | processed_transcript |
| -483816 | enst00000581803 | sg00000266124 | mir5587-201 | 16 | 535316 | 535368 | + | miRNA | mirna |
| 484907 | enst00000569744 | sg00000100726 | telo2-208 | 16 | 1505139 | 1506971 | + | lnc_RNA | retained_intron |
| 485209 | enst00000563676 | sg00000100726 | telo2-203 | 16 | 1505441 | 1506631 | + | lnc_RNA | retained_intron |
| 486302 | enst00000568240 | sg00000100726 | telo2-207 | 16 | 1506534 | 1510457 | + | lnc_RNA | retained_intron |
| -491309 | enst00000568988 | sg00000103326 | capn15-207 | 16 | 527823 | 548209 | + | mRNA | protein_coding |
| -491384 | enst00000567216 | sg00000103326 | capn15-205 | 16 | 527748 | 539858 | + | lnc_RNA | processed_transcript |
| -491415 | enst00000562370 | sg00000103326 | capn15-202 | 16 | 527717 | 547392 | + | mRNA | protein_coding |
| -491420 | enst00000219611 | sg00000103326 | capn15-201 | 16 | 527712 | 554636 | + | mRNA | protein_coding |
| -491725 | enst00000622160 | sg00000277142 | linc00235-201 | 16 | 525155 | 527407 | - | lnc_RNA | lncrna |
| 492747 | enst00000566922 | sg00000260646 | al031705.1-201 | 16 | 1512979 | 1514675 | + | lnc_RNA | lncrna |
| 499806 | enst00000568837 | sg00000187535 | ift140-209 | 16 | 1518102 | 1520038 | - | mRNA | protein_coding |
Source file: /hps/research1/birney/users/adrien/analyses/cancer_DNA_promethion/run_1_2_3_4/DNA_pipeline_2/results/methylation/pycometh_meth_comp_CGI_3/out.tsv.gz
MD5 hash: 9aa0e3f69cb4e12345c3758eb68a5efc