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CpG interval report generated on 20/05/20 with pycoMeth 0.4.6
Interval details
| pvalue rank | chromosome | start | end | length | number of samples | number of CpGs | pvalue | adjusted pvalue |
|---|---|---|---|---|---|---|---|---|
| #120 | 19 | 8525815 | 8527115 | 1300 | 3 | 39 | 1.14649e-16 | 9.50155e-15 |
Methylation log-likelihood ratio by CpG position
Distribution of CpG methylation log-likelihood ratio by sample
Closest transcripts TSS
| distance to tss | transcript id | gene id | transcript name | chromosome | start | end | strand | feature type | transcript biotype |
|---|---|---|---|---|---|---|---|---|---|
| 0 | enst00000596245 | sg00000142347 | myo1f-206 | 19 | 8525226 | 8526622 | - | lnc_RNA | retained_intron |
| 272 | enst00000600885 | sg00000142347 | myo1f-218 | 19 | 8522810 | 8527387 | - | lnc_RNA | retained_intron |
| 3347 | enst00000597459 | sg00000142347 | myo1f-211 | 19 | 8529809 | 8530462 | - | lnc_RNA | processed_transcript |
| 3369 | enst00000598797 | sg00000142347 | myo1f-215 | 19 | 8530040 | 8530484 | - | lnc_RNA | retained_intron |
| -11648 | enst00000393927 | sg00000133250 | znf414-202 | 19 | 8509678 | 8514167 | - | mRNA | protein_coding |
| -11651 | enst00000600906 | sg00000133250 | znf414-208 | 19 | 8512996 | 8514164 | - | lnc_RNA | retained_intron |
| -11662 | enst00000599379 | sg00000133250 | znf414-207 | 19 | 8511867 | 8514153 | - | mRNA | nonsense_mediated_decay |
| -11667 | enst00000255616 | sg00000133250 | znf414-201 | 19 | 8511335 | 8514148 | - | mRNA | protein_coding |
| 12937 | enst00000597222 | sg00000142347 | myo1f-210 | 19 | 8530196 | 8540052 | - | lnc_RNA | retained_intron |
| -13401 | enst00000594748 | sg00000133250 | znf414-204 | 19 | 8510996 | 8512414 | - | mRNA | protein_coding |
| -13416 | enst00000593661 | sg00000133250 | znf414-203 | 19 | 8510978 | 8512399 | - | mRNA | protein_coding |
| -13808 | enst00000602128 | sg00000133250 | znf414-209 | 19 | 8511485 | 8512007 | - | lnc_RNA | retained_intron |
| -14009 | enst00000595348 | sg00000133250 | znf414-205 | 19 | 8510978 | 8511806 | - | lnc_RNA | retained_intron |
| -14116 | enst00000596772 | sg00000133250 | znf414-206 | 19 | 8510580 | 8511699 | - | mRNA | protein_coding |
| 14841 | enst00000598005 | sg00000142347 | myo1f-212 | 19 | 8530482 | 8541956 | - | lnc_RNA | processed_transcript |
| 18603 | enst00000601502 | sg00000142347 | myo1f-219 | 19 | 8544068 | 8545718 | - | lnc_RNA | retained_intron |
| 20928 | enst00000602136 | sg00000142347 | myo1f-220 | 19 | 8540319 | 8548043 | - | mRNA | nonsense_mediated_decay |
| 22391 | enst00000598703 | sg00000268618 | ac092316.1-201 | 19 | 8549506 | 8550139 | + | lnc_RNA | lncrna |
| -23175 | enst00000423345 | sg00000133246 | pram1-201 | 19 | 8490056 | 8502640 | - | mRNA | protein_coding |
| -23181 | enst00000600262 | sg00000133246 | pram1-204 | 19 | 8499196 | 8502634 | - | mRNA | protein_coding |
| 23217 | enst00000600825 | sg00000142347 | myo1f-217 | 19 | 8547854 | 8550332 | - | lnc_RNA | retained_intron |
| 23298 | enst00000596937 | sg00000142347 | myo1f-209 | 19 | 8548298 | 8550413 | - | lnc_RNA | retained_intron |
| 23541 | enst00000595191 | sg00000142347 | myo1f-204 | 19 | 8549580 | 8550656 | - | lnc_RNA | retained_intron |
| 24921 | enst00000594977 | sg00000142347 | myo1f-202 | 19 | 8545443 | 8552036 | - | lnc_RNA | retained_intron |
| 27449 | enst00000598529 | sg00000142347 | myo1f-214 | 19 | 8551423 | 8554564 | - | lnc_RNA | retained_intron |
| 28662 | enst00000599123 | sg00000142347 | myo1f-216 | 19 | 8553222 | 8555777 | - | lnc_RNA | retained_intron |
| -33792 | enst00000594696 | sg00000133246 | pram1-202 | 19 | 8490085 | 8492023 | - | lnc_RNA | retained_intron |
| -34940 | enst00000599698 | sg00000133246 | pram1-203 | 19 | 8490056 | 8490875 | - | lnc_RNA | retained_intron |
| -38513 | enst00000602219 | sg00000099783 | hnrnpm-216 | 19 | 8487302 | 8489110 | + | lnc_RNA | processed_transcript |
| -39657 | enst00000598999 | sg00000099783 | hnrnpm-212 | 19 | 8486158 | 8487184 | + | mRNA | protein_coding |
| -39953 | enst00000596295 | sg00000099783 | hnrnpm-205 | 19 | 8485862 | 8488946 | + | mRNA | protein_coding |
| -43266 | enst00000598603 | sg00000099783 | hnrnpm-211 | 19 | 8482549 | 8485723 | + | lnc_RNA | retained_intron |
| -44346 | enst00000597081 | sg00000099783 | hnrnpm-207 | 19 | 8481469 | 8487082 | + | lnc_RNA | processed_transcript |
| 50318 | enst00000596645 | sg00000142347 | myo1f-207 | 19 | 8555392 | 8577433 | - | lnc_RNA | retained_intron |
| 50323 | enst00000595325 | sg00000142347 | myo1f-205 | 19 | 8551666 | 8577438 | - | lnc_RNA | retained_intron |
| 50323 | enst00000594774 | sg00000142347 | myo1f-201 | 19 | 8551830 | 8577438 | - | lnc_RNA | retained_intron |
| 50323 | enst00000596675 | sg00000142347 | myo1f-208 | 19 | 8553350 | 8577438 | - | mRNA | protein_coding |
| 50323 | enst00000598321 | sg00000142347 | myo1f-213 | 19 | 8553212 | 8577438 | - | mRNA | nonsense_mediated_decay |
| 50327 | enst00000644032 | sg00000142347 | myo1f-222 | 19 | 8520778 | 8577442 | - | mRNA | protein_coding |
| 50327 | enst00000595046 | sg00000142347 | myo1f-203 | 19 | 8576442 | 8577442 | - | lnc_RNA | retained_intron |
| 50462 | enst00000613525 | sg00000142347 | myo1f-221 | 19 | 8520797 | 8577577 | - | mRNA | protein_coding |
| 54045 | enst00000597256 | sg00000267986 | ac130469.1-201 | 19 | 8581160 | 8582715 | + | lnc_RNA | lncrna |
| -59566 | enst00000597270 | sg00000099783 | hnrnpm-208 | 19 | 8466249 | 8486273 | + | mRNA | protein_coding |
| -62318 | enst00000598367 | sg00000099783 | hnrnpm-210 | 19 | 8463497 | 8474244 | + | mRNA | protein_coding |
| 62576 | enst00000596911 | sg00000142303 | adamts10-210 | 19 | 8586622 | 8589691 | - | lnc_RNA | retained_intron |
| -63846 | enst00000593293 | sg00000099783 | hnrnpm-203 | 19 | 8461969 | 8465372 | + | lnc_RNA | retained_intron |
| 65059 | enst00000596236 | sg00000142303 | adamts10-206 | 19 | 8589801 | 8592174 | - | lnc_RNA | retained_intron |
| 65081 | enst00000595838 | sg00000142303 | adamts10-205 | 19 | 8580242 | 8592196 | - | mRNA | protein_coding |
| 65101 | enst00000593826 | sg00000142303 | adamts10-203 | 19 | 8586656 | 8592216 | - | mRNA | nonsense_mediated_decay |
| 66401 | enst00000603221 | sg00000142303 | adamts10-214 | 19 | 8589941 | 8593516 | - | lnc_RNA | retained_intron |
| 69242 | enst00000601872 | sg00000142303 | adamts10-213 | 19 | 8595613 | 8596357 | - | lnc_RNA | retained_intron |
| 70207 | enst00000601163 | sg00000142303 | adamts10-212 | 19 | 8591800 | 8597322 | - | lnc_RNA | retained_intron |
| 78664 | enst00000593913 | sg00000142303 | adamts10-204 | 19 | 8580688 | 8605779 | - | mRNA | nonsense_mediated_decay |
| -80218 | enst00000623944 | sg00000279827 | ac136469.2-201 | 19 | 8444570 | 8445597 | - | unconfirmed_transcript | tec |
| -80821 | enst00000601645 | sg00000099783 | hnrnpm-215 | 19 | 8444994 | 8471410 | + | mRNA | protein_coding |
| -80822 | enst00000596984 | sg00000099783 | hnrnpm-206 | 19 | 8444993 | 8467582 | + | mRNA | protein_coding |
| -80823 | enst00000594907 | sg00000099783 | hnrnpm-204 | 19 | 8444992 | 8485724 | + | mRNA | protein_coding |
| -80825 | enst00000620401 | sg00000099783 | hnrnpm-217 | 19 | 8444990 | 8489110 | + | mRNA | protein_coding |
| -80838 | enst00000600806 | sg00000099783 | hnrnpm-214 | 19 | 8444977 | 8489110 | + | mRNA | nonsense_mediated_decay |
| -80840 | enst00000325495 | sg00000099783 | hnrnpm-201 | 19 | 8444975 | 8489114 | + | mRNA | protein_coding |
| -80844 | enst00000600092 | sg00000099783 | hnrnpm-213 | 19 | 8444971 | 8485648 | + | mRNA | protein_coding |
| -80895 | enst00000597813 | sg00000099783 | hnrnpm-209 | 19 | 8444920 | 8463852 | + | lnc_RNA | retained_intron |
| -81048 | enst00000348943 | sg00000099783 | hnrnpm-202 | 19 | 8444767 | 8489114 | + | mRNA | protein_coding |
| 81150 | enst00000270328 | sg00000142303 | adamts10-201 | 19 | 8580242 | 8608265 | - | mRNA | protein_coding |
| 83565 | enst00000596466 | sg00000142303 | adamts10-207 | 19 | 8597246 | 8610680 | - | lnc_RNA | processed_transcript |
| 83566 | enst00000596851 | sg00000142303 | adamts10-209 | 19 | 8584963 | 8610681 | - | mRNA | nonsense_mediated_decay |
| 83585 | enst00000596709 | sg00000142303 | adamts10-208 | 19 | 8597237 | 8610700 | - | lnc_RNA | processed_transcript |
| 83600 | enst00000597188 | sg00000142303 | adamts10-211 | 19 | 8580240 | 8610715 | - | mRNA | protein_coding |
| 83620 | enst00000593534 | sg00000142303 | adamts10-202 | 19 | 8604936 | 8610735 | - | lnc_RNA | retained_intron |
| -97988 | enst00000595706 | sg00000268931 | ac136469.1-201 | 19 | 8423355 | 8427827 | - | lnc_RNA | lncrna |
| 103520 | enst00000671902 | sg00000268480 | linc01862-204 | 19 | 8630635 | 8677708 | + | mRNA | protein_coding |
| 103523 | enst00000663339 | sg00000268480 | linc01862-203 | 19 | 8630638 | 8638649 | + | lnc_RNA | processed_transcript |
| 103540 | enst00000673603 | sg00000268480 | linc01862-205 | 19 | 8630655 | 8677708 | + | mRNA | protein_coding |
| 103556 | enst00000593792 | sg00000268480 | linc01862-202 | 19 | 8630671 | 8638649 | + | lnc_RNA | processed_transcript |
| -103888 | enst00000594796 | sg00000099785 | marchf2-203 | 19 | 8421927 | 8430892 | + | lnc_RNA | retained_intron |
| -107410 | enst00000602117 | sg00000099785 | marchf2-208 | 19 | 8418405 | 8439017 | + | mRNA | protein_coding |
| -112393 | enst00000595213 | sg00000099785 | marchf2-205 | 19 | 8413422 | 8422009 | + | mRNA | protein_coding |
| -112510 | enst00000601283 | sg00000099785 | marchf2-206 | 19 | 8413305 | 8438731 | + | mRNA | protein_coding |
| -112512 | enst00000215555 | sg00000099785 | marchf2-201 | 19 | 8413303 | 8439011 | + | mRNA | protein_coding |
| -112520 | enst00000601724 | sg00000099785 | marchf2-207 | 19 | 8413295 | 8426673 | + | mRNA | protein_coding |
| -112525 | enst00000595142 | sg00000099785 | marchf2-204 | 19 | 8413290 | 8426668 | + | mRNA | protein_coding |
| -112545 | enst00000381035 | sg00000099785 | marchf2-202 | 19 | 8413270 | 8439004 | + | mRNA | protein_coding |
| 128458 | enst00000570582 | sg00000268480 | linc01862-201 | 19 | 8655573 | 8677708 | + | mRNA | protein_coding |
| -135130 | enst00000593581 | sg00000269386 | rab11b-as1-201 | 19 | 8374379 | 8390685 | - | lnc_RNA | lncrna |
| -135422 | enst00000594216 | sg00000185236 | rab11b-202 | 19 | 8390393 | 8402924 | + | mRNA | protein_coding |
| -135426 | enst00000601897 | sg00000185236 | rab11b-205 | 19 | 8390389 | 8402799 | + | mRNA | protein_coding |
| -135452 | enst00000598706 | sg00000185236 | rab11b-203 | 19 | 8390363 | 8400342 | + | lnc_RNA | retained_intron |
| -135455 | enst00000328024 | sg00000185236 | rab11b-201 | 19 | 8390360 | 8404434 | + | mRNA | protein_coding |
| -135691 | enst00000597785 | sg00000269386 | rab11b-as1-203 | 19 | 8374373 | 8390124 | - | lnc_RNA | lncrna |
| -135834 | enst00000600719 | sg00000185236 | rab11b-204 | 19 | 8389981 | 8402550 | + | mRNA | protein_coding |
| -136435 | enst00000585029 | sg00000265390 | mir4999-201 | 19 | 8389290 | 8389380 | - | miRNA | mirna |
| -147988 | enst00000597407 | sg00000269386 | rab11b-as1-202 | 19 | 8374421 | 8377827 | - | lnc_RNA | lncrna |
| -161417 | enst00000594875 | sg00000167772 | angptl4-205 | 19 | 8364398 | 8374370 | + | mRNA | protein_coding |
| -161646 | enst00000593998 | sg00000167772 | angptl4-203 | 19 | 8364169 | 8374370 | + | mRNA | nonsense_mediated_decay |
| -161646 | enst00000393962 | sg00000167772 | angptl4-202 | 19 | 8364169 | 8374331 | + | mRNA | protein_coding |
| -161646 | enst00000594348 | sg00000167772 | angptl4-204 | 19 | 8364169 | 8371262 | + | lnc_RNA | retained_intron |
| -161649 | enst00000598255 | sg00000167772 | angptl4-208 | 19 | 8364166 | 8371261 | + | lnc_RNA | retained_intron |
| -161659 | enst00000595079 | sg00000167772 | angptl4-206 | 19 | 8364156 | 8374288 | + | mRNA | nonsense_mediated_decay |
| -161660 | enst00000301455 | sg00000167772 | angptl4-201 | 19 | 8364155 | 8374370 | + | mRNA | protein_coding |
| -162404 | enst00000601770 | sg00000167772 | angptl4-210 | 19 | 8363411 | 8364578 | + | mRNA | protein_coding |
| -162516 | enst00000597137 | sg00000167772 | angptl4-207 | 19 | 8363299 | 8371230 | + | lnc_RNA | retained_intron |
| -162516 | enst00000599192 | sg00000167772 | angptl4-209 | 19 | 8363299 | 8364635 | + | mRNA | protein_coding |
| -162526 | enst00000601886 | sg00000167772 | angptl4-211 | 19 | 8363289 | 8364609 | + | mRNA | protein_coding |
| 169206 | enst00000623340 | sg00000279426 | ac243312.1-201 | 19 | 8695721 | 8696321 | - | unconfirmed_transcript | tec |
| 171590 | enst00000612068 | sg00000181786 | actl9-202 | 19 | 8697454 | 8698705 | - | mRNA | protein_coding |
| 171680 | enst00000324436 | sg00000181786 | actl9-201 | 19 | 8697400 | 8698795 | - | mRNA | protein_coding |
| -179298 | enst00000596405 | sg00000268884 | ac010323.2-201 | 19 | 8346517 | 8347687 | + | pseudogenic_transcript | processed_pseudogene |
| -182553 | enst00000595639 | sg00000186994 | kank3-204 | 19 | 8333217 | 8343262 | - | mRNA | protein_coding |
| -182553 | enst00000593649 | sg00000186994 | kank3-203 | 19 | 8323315 | 8343262 | - | mRNA | protein_coding |
| -182553 | enst00000330915 | sg00000186994 | kank3-201 | 19 | 8322584 | 8343262 | - | mRNA | protein_coding |
| -191033 | enst00000593331 | sg00000186994 | kank3-202 | 19 | 8334113 | 8334782 | - | lnc_RNA | retained_intron |
| -191385 | enst00000610351 | sg00000186994 | kank3-205 | 19 | 8332745 | 8334430 | - | mRNA | protein_coding |
| 194519 | enst00000641125 | sg00000181733 | or2z1-202 | 19 | 8721634 | 8732160 | + | mRNA | protein_coding |
| 202089 | enst00000599928 | sg00000269244 | rpl23ap78-201 | 19 | 8728735 | 8729204 | - | pseudogenic_transcript | processed_pseudogene |
| 203839 | enst00000324060 | sg00000181733 | or2z1-201 | 19 | 8730954 | 8732009 | + | mRNA | protein_coding |
| -204181 | enst00000417088 | sg00000233927 | rps28-201 | 19 | 8321634 | 8322396 | + | lnc_RNA | retained_intron |
| -204319 | enst00000600659 | sg00000233927 | rps28-203 | 19 | 8321496 | 8323340 | + | mRNA | protein_coding |
| -204320 | enst00000602140 | sg00000233927 | rps28-204 | 19 | 8321495 | 8322492 | + | lnc_RNA | retained_intron |
| -204436 | enst00000598884 | sg00000167774 | ac010323.1-201 | 19 | 8308283 | 8321379 | - | mRNA | nonsense_mediated_decay |
| -204440 | enst00000595856 | sg00000267855 | ndufa7-203 | 19 | 8308878 | 8321375 | - | mRNA | nonsense_mediated_decay |
| -204440 | enst00000593729 | sg00000267855 | ndufa7-202 | 19 | 8308768 | 8321375 | - | mRNA | nonsense_mediated_decay |
| -204440 | enst00000601101 | sg00000267855 | ndufa7-204 | 19 | 8308773 | 8321375 | - | mRNA | nonsense_mediated_decay |
| -204440 | enst00000301457 | sg00000267855 | ndufa7-201 | 19 | 8311284 | 8321375 | - | mRNA | protein_coding |
| -204657 | enst00000449223 | sg00000233927 | rps28-202 | 19 | 8321158 | 8322946 | + | lnc_RNA | retained_intron |
| -206255 | enst00000602059 | sg00000267855 | ndufa7-206 | 19 | 8310505 | 8319560 | - | lnc_RNA | retained_intron |
| -209003 | enst00000601258 | sg00000267855 | ndufa7-205 | 19 | 8311366 | 8316812 | - | lnc_RNA | retained_intron |
| -217457 | enst00000301458 | sg00000167775 | cd320-201 | 19 | 8302127 | 8308358 | - | mRNA | protein_coding |
| -217459 | enst00000596246 | sg00000167775 | cd320-204 | 19 | 8305635 | 8308356 | - | lnc_RNA | processed_transcript |
| -217465 | enst00000537716 | sg00000167775 | cd320-202 | 19 | 8302127 | 8308350 | - | mRNA | protein_coding |
| -217480 | enst00000598299 | sg00000167775 | cd320-205 | 19 | 8304767 | 8308335 | - | lnc_RNA | retained_intron |
| -217515 | enst00000596002 | sg00000167775 | cd320-203 | 19 | 8302127 | 8308300 | - | mRNA | nonsense_mediated_decay |
| -217544 | enst00000599573 | sg00000167775 | cd320-206 | 19 | 8302317 | 8308271 | - | mRNA | nonsense_mediated_decay |
| 251746 | enst00000600294 | sg00000268922 | ac012616.1-201 | 19 | 8778665 | 8778861 | - | pseudogenic_transcript | processed_pseudogene |
| -264188 | enst00000599275 | sg00000090661 | cers4-215 | 19 | 8261627 | 8262421 | + | lnc_RNA | retained_intron |
| -264818 | enst00000558302 | sg00000090661 | cers4-204 | 19 | 8260997 | 8261779 | + | lnc_RNA | processed_transcript |
| -275289 | enst00000557925 | sg00000090661 | cers4-202 | 19 | 8250526 | 8262418 | + | lnc_RNA | retained_intron |
| -286167 | enst00000605980 | sg00000271717 | ac022146.2-201 | 19 | 8222153 | 8239648 | - | lnc_RNA | lncrna |
| 294386 | enst00000594006 | sg00000269300 | ac008734.1-201 | 19 | 8821501 | 8824110 | + | lnc_RNA | lncrna |
| 295774 | enst00000301475 | sg00000167785 | znf558-201 | 19 | 8809706 | 8822889 | - | mRNA | protein_coding |
| 297984 | enst00000597304 | sg00000167785 | znf558-205 | 19 | 8810938 | 8825099 | - | lnc_RNA | retained_intron |
| -300788 | enst00000558877 | sg00000090661 | cers4-207 | 19 | 8225027 | 8256675 | + | mRNA | protein_coding |
| 305127 | enst00000593891 | sg00000167785 | znf558-202 | 19 | 8831144 | 8832242 | - | lnc_RNA | retained_intron |
| 305154 | enst00000595786 | sg00000167785 | znf558-203 | 19 | 8824181 | 8832269 | - | lnc_RNA | processed_transcript |
| 305189 | enst00000601372 | sg00000167785 | znf558-207 | 19 | 8806170 | 8832304 | - | mRNA | protein_coding |
| 305189 | enst00000596172 | sg00000167785 | znf558-204 | 19 | 8824280 | 8832304 | - | lnc_RNA | processed_transcript |
| 305199 | enst00000599938 | sg00000167785 | znf558-206 | 19 | 8822708 | 8832314 | - | lnc_RNA | processed_transcript |
| 305283 | enst00000595891 | sg00000170948 | mbd3l1-202 | 19 | 8832398 | 8843319 | + | mRNA | protein_coding |
| 305950 | enst00000595277 | sg00000269400 | ac008734.2-201 | 19 | 8833065 | 8833541 | + | lnc_RNA | lncrna |
| 315478 | enst00000305625 | sg00000170948 | mbd3l1-201 | 19 | 8842593 | 8843340 | + | mRNA | protein_coding |
| -316181 | enst00000560412 | sg00000090661 | cers4-211 | 19 | 8209634 | 8251171 | + | mRNA | protein_coding |
| -316384 | enst00000558501 | sg00000090661 | cers4-206 | 19 | 8209431 | 8257161 | + | lnc_RNA | retained_intron |
| -316432 | enst00000595722 | sg00000090661 | cers4-214 | 19 | 8209383 | 8262421 | + | lnc_RNA | processed_transcript |
| -316439 | enst00000600912 | sg00000090661 | cers4-216 | 19 | 8209376 | 8214529 | + | lnc_RNA | processed_transcript |
| -316444 | enst00000559336 | sg00000090661 | cers4-208 | 19 | 8209371 | 8262421 | + | mRNA | protein_coding |
| -316445 | enst00000251363 | sg00000090661 | cers4-201 | 19 | 8209370 | 8262421 | + | mRNA | protein_coding |
| -316459 | enst00000559450 | sg00000090661 | cers4-209 | 19 | 8209356 | 8262421 | + | mRNA | protein_coding |
| -316475 | enst00000559490 | sg00000090661 | cers4-210 | 19 | 8209340 | 8241370 | + | lnc_RNA | processed_transcript |
| -316489 | enst00000561053 | sg00000090661 | cers4-213 | 19 | 8209326 | 8255724 | + | mRNA | protein_coding |
| -316502 | enst00000558331 | sg00000090661 | cers4-205 | 19 | 8209313 | 8262421 | + | mRNA | protein_coding |
| -316512 | enst00000558268 | sg00000090661 | cers4-203 | 19 | 8209303 | 8255655 | + | mRNA | protein_coding |
| -319079 | enst00000561008 | sg00000090661 | cers4-212 | 19 | 8206736 | 8254602 | + | mRNA | protein_coding |
| 339899 | enst00000596956 | sg00000181143 | muc16-203 | 19 | 8863316 | 8867014 | - | lnc_RNA | processed_transcript |
| -352543 | enst00000595307 | sg00000269651 | ac022146.1-201 | 19 | 8173272 | 8175567 | + | pseudogenic_transcript | unprocessed_pseudogene |
| 364882 | enst00000596768 | sg00000181143 | muc16-202 | 19 | 8848845 | 8891997 | - | mRNA | nonsense_mediated_decay |
| 368975 | enst00000601404 | sg00000181143 | muc16-205 | 19 | 8848845 | 8896090 | - | mRNA | nonsense_mediated_decay |
| 368975 | enst00000599436 | sg00000181143 | muc16-204 | 19 | 8848845 | 8896090 | - | mRNA | protein_coding |
| -376223 | enst00000600128 | sg00000142449 | fbn3-205 | 19 | 8065402 | 8149592 | - | mRNA | protein_coding |
| -376946 | enst00000601739 | sg00000142449 | fbn3-207 | 19 | 8065403 | 8148869 | - | mRNA | protein_coding |
| -378049 | enst00000270509 | sg00000142449 | fbn3-201 | 19 | 8065403 | 8147766 | - | mRNA | protein_coding |
| -378318 | enst00000651877 | sg00000142449 | fbn3-209 | 19 | 8065402 | 8147497 | - | mRNA | protein_coding |
| -414009 | enst00000594331 | sg00000142449 | fbn3-202 | 19 | 8110888 | 8111806 | - | lnc_RNA | retained_intron |
| -424847 | enst00000602121 | sg00000142449 | fbn3-208 | 19 | 8095379 | 8100968 | - | mRNA | protein_coding |
| -435582 | enst00000601281 | sg00000142449 | fbn3-206 | 19 | 8087204 | 8090233 | - | mRNA | protein_coding |
| -435838 | enst00000598269 | sg00000142449 | fbn3-204 | 19 | 8087825 | 8089977 | - | lnc_RNA | retained_intron |
| -444759 | enst00000595036 | sg00000142449 | fbn3-203 | 19 | 8074766 | 8081056 | - | lnc_RNA | retained_intron |
| 454227 | enst00000397910 | sg00000181143 | muc16-201 | 19 | 8848844 | 8981342 | - | mRNA | protein_coding |
| -472765 | enst00000315626 | sg00000131142 | ccl25-202 | 19 | 8053050 | 8057925 | + | mRNA | protein_coding |
| -472765 | enst00000458625 | sg00000131142 | ccl25-204 | 19 | 8053050 | 8062650 | + | mRNA | nonsense_mediated_decay |
| -472815 | enst00000390669 | sg00000131142 | ccl25-203 | 19 | 8053000 | 8062646 | + | mRNA | protein_coding |
| -473048 | enst00000253451 | sg00000131142 | ccl25-201 | 19 | 8052767 | 8062622 | + | mRNA | protein_coding |
| 492229 | enst00000586496 | sg00000267332 | bola3p2-201 | 19 | 9019344 | 9019984 | + | pseudogenic_transcript | processed_pseudogene |
Source file: /hps/research1/birney/users/adrien/analyses/cancer_DNA_promethion/run_1_2_3_4/DNA_pipeline_2/results/methylation/pycometh_meth_comp_CGI_3/out.tsv.gz
MD5 hash: 9aa0e3f69cb4e12345c3758eb68a5efc