PycoMeth
Documentation
GitHub
CpG interval report generated on 20/05/20 with pycoMeth 0.4.6
Interval details
| pvalue rank | chromosome | start | end | length | number of samples | number of CpGs | pvalue | adjusted pvalue |
|---|---|---|---|---|---|---|---|---|
| #118 | 19 | 13962302 | 13964169 | 1867 | 3 | 64 | 1.12507e-16 | 9.4024e-15 |
Methylation log-likelihood ratio by CpG position
Distribution of CpG methylation log-likelihood ratio by sample
Closest transcripts TSS
| distance to tss | transcript id | gene id | transcript name | chromosome | start | end | strand | feature type | transcript biotype |
|---|---|---|---|---|---|---|---|---|---|
| 0 | enst00000588520 | sg00000132005 | rfx1-203 | 19 | 13963704 | 13964055 | - | lnc_RNA | retained_intron |
| -2316 | enst00000591385 | sg00000132017 | dcaf15-205 | 19 | 13959986 | 13960489 | + | lnc_RNA | retained_intron |
| -2718 | enst00000588523 | sg00000132017 | dcaf15-204 | 19 | 13959584 | 13961329 | + | lnc_RNA | retained_intron |
| -2741 | enst00000587307 | sg00000132017 | dcaf15-203 | 19 | 13959561 | 13961101 | + | mRNA | protein_coding |
| -5893 | enst00000585468 | sg00000132017 | dcaf15-202 | 19 | 13956409 | 13959847 | + | mRNA | protein_coding |
| -8910 | enst00000538371 | sg00000132000 | podnl1-203 | 19 | 13932668 | 13953392 | - | mRNA | protein_coding |
| -8919 | enst00000587458 | sg00000132000 | podnl1-208 | 19 | 13936429 | 13953383 | - | mRNA | protein_coding |
| -8921 | enst00000538517 | sg00000132000 | podnl1-204 | 19 | 13931472 | 13953381 | - | mRNA | protein_coding |
| -9000 | enst00000585607 | sg00000132000 | podnl1-205 | 19 | 13933957 | 13953302 | - | mRNA | protein_coding |
| -9025 | enst00000588317 | sg00000132000 | podnl1-210 | 19 | 13949288 | 13953277 | - | lnc_RNA | processed_transcript |
| -9786 | enst00000591802 | sg00000132017 | dcaf15-206 | 19 | 13952516 | 13954437 | + | mRNA | nonsense_mediated_decay |
| -9810 | enst00000254337 | sg00000132017 | dcaf15-201 | 19 | 13952492 | 13961449 | + | mRNA | protein_coding |
| -23826 | enst00000339560 | sg00000132000 | podnl1-202 | 19 | 13932353 | 13938476 | - | mRNA | protein_coding |
| -24010 | enst00000588872 | sg00000132000 | podnl1-212 | 19 | 13931461 | 13938292 | - | mRNA | protein_coding |
| -24206 | enst00000586075 | sg00000132000 | podnl1-206 | 19 | 13933239 | 13938096 | - | mRNA | protein_coding |
| -24237 | enst00000254320 | sg00000132000 | podnl1-201 | 19 | 13932355 | 13938065 | - | mRNA | protein_coding |
| -24417 | enst00000587288 | sg00000132000 | podnl1-207 | 19 | 13933879 | 13937885 | - | lnc_RNA | processed_transcript |
| -26273 | enst00000588764 | sg00000132000 | podnl1-211 | 19 | 13933209 | 13936029 | - | mRNA | protein_coding |
| -27940 | enst00000591353 | sg00000132000 | podnl1-213 | 19 | 13933238 | 13934362 | - | mRNA | protein_coding |
| -29358 | enst00000587954 | sg00000132000 | podnl1-209 | 19 | 13931187 | 13932944 | - | mRNA | protein_coding |
| -38723 | enst00000589224 | sg00000132024 | cc2d1a-207 | 19 | 13923579 | 13927553 | + | lnc_RNA | retained_intron |
| -38974 | enst00000587508 | sg00000132024 | cc2d1a-204 | 19 | 13923328 | 13930845 | + | mRNA | protein_coding |
| -42025 | enst00000588932 | sg00000132024 | cc2d1a-205 | 19 | 13920277 | 13923753 | + | lnc_RNA | retained_intron |
| 42093 | enst00000588885 | sg00000132005 | rfx1-204 | 19 | 13983313 | 14006262 | - | mRNA | protein_coding |
| 42098 | enst00000589760 | sg00000132005 | rfx1-206 | 19 | 13983069 | 14006267 | - | lnc_RNA | retained_intron |
| 42120 | enst00000589937 | sg00000132005 | rfx1-207 | 19 | 13983028 | 14006289 | - | lnc_RNA | retained_intron |
| 42151 | enst00000254325 | sg00000132005 | rfx1-201 | 19 | 13961530 | 14006320 | - | mRNA | protein_coding |
| 42153 | enst00000589239 | sg00000132005 | rfx1-205 | 19 | 13969640 | 14006322 | - | lnc_RNA | retained_intron |
| 42253 | enst00000622575 | sg00000275091 | ac022098.4-201 | 19 | 14006422 | 14006773 | + | lnc_RNA | lncrna |
| -42608 | enst00000589679 | sg00000132024 | cc2d1a-209 | 19 | 13919694 | 13923399 | + | lnc_RNA | retained_intron |
| 42870 | enst00000586913 | sg00000132005 | rfx1-202 | 19 | 13998168 | 14007039 | - | lnc_RNA | processed_transcript |
| -43795 | enst00000589138 | sg00000132024 | cc2d1a-206 | 19 | 13918507 | 13929537 | + | lnc_RNA | retained_intron |
| -49049 | enst00000586955 | sg00000132024 | cc2d1a-203 | 19 | 13913253 | 13930879 | + | mRNA | nonsense_mediated_decay |
| -55850 | enst00000585755 | sg00000132016 | c19orf57-202 | 19 | 13893180 | 13906452 | - | mRNA | protein_coding |
| -55860 | enst00000589606 | sg00000132024 | cc2d1a-208 | 19 | 13906442 | 13930659 | + | mRNA | protein_coding |
| -56099 | enst00000585896 | sg00000132024 | cc2d1a-202 | 19 | 13906203 | 13920381 | + | lnc_RNA | retained_intron |
| -56101 | enst00000318003 | sg00000132024 | cc2d1a-201 | 19 | 13906201 | 13930879 | + | mRNA | protein_coding |
| -56137 | enst00000346736 | sg00000132016 | c19orf57-201 | 19 | 13882355 | 13906165 | - | mRNA | protein_coding |
| -56195 | enst00000591586 | sg00000132016 | c19orf57-208 | 19 | 13882389 | 13906107 | - | mRNA | protein_coding |
| -57410 | enst00000586783 | sg00000132016 | c19orf57-204 | 19 | 13882355 | 13904892 | - | mRNA | protein_coding |
| 63979 | enst00000431365 | sg00000171136 | rln3-201 | 19 | 14028148 | 14031551 | + | mRNA | protein_coding |
| 64036 | enst00000585987 | sg00000171136 | rln3-202 | 19 | 14028205 | 14030948 | + | mRNA | protein_coding |
| 67388 | enst00000590528 | sg00000267670 | ac022098.2-201 | 19 | 14030855 | 14031557 | - | lnc_RNA | lncrna |
| 67593 | enst00000263379 | sg00000104998 | il27ra-201 | 19 | 14031762 | 14053218 | + | mRNA | protein_coding |
| -72361 | enst00000589393 | sg00000132016 | c19orf57-206 | 19 | 13885270 | 13889941 | - | mRNA | protein_coding |
| -72866 | enst00000591439 | sg00000132016 | c19orf57-207 | 19 | 13884935 | 13889436 | - | mRNA | protein_coding |
| -73922 | enst00000588115 | sg00000132016 | c19orf57-205 | 19 | 13882348 | 13888380 | - | mRNA | protein_coding |
| -78702 | enst00000586500 | sg00000132016 | c19orf57-203 | 19 | 13882601 | 13883600 | - | lnc_RNA | retained_intron |
| -85053 | enst00000397555 | sg00000187556 | nanos3-202 | 19 | 13877249 | 13880750 | + | mRNA | protein_coding |
| -85055 | enst00000339133 | sg00000187556 | nanos3-201 | 19 | 13877247 | 13880503 | + | mRNA | protein_coding |
| -87427 | enst00000384853 | sg00000207585 | mir181d-201 | 19 | 13874875 | 13875011 | + | miRNA | mirna |
| -87603 | enst00000384881 | sg00000207613 | mir181c-201 | 19 | 13874699 | 13874808 | + | miRNA | mirna |
| 92857 | enst00000661591 | sg00000187867 | palm3-203 | 19 | 14053363 | 14057026 | - | mRNA | protein_coding |
| 93430 | enst00000589048 | sg00000187867 | palm3-202 | 19 | 14053367 | 14057599 | - | mRNA | protein_coding |
| 94990 | enst00000340790 | sg00000187867 | palm3-201 | 19 | 14053367 | 14059159 | - | mRNA | protein_coding |
| -96885 | enst00000591161 | sg00000187556 | nanos3-203 | 19 | 13865417 | 13880757 | + | lnc_RNA | processed_transcript |
| 97907 | enst00000669674 | sg00000187867 | palm3-204 | 19 | 14053367 | 14062076 | - | mRNA | protein_coding |
| -100239 | enst00000591727 | sg00000187556 | nanos3-204 | 19 | 13862063 | 13880755 | + | lnc_RNA | processed_transcript |
| 106173 | enst00000585891 | sg00000228887 | eef1dp1-201 | 19 | 14070342 | 14071237 | + | pseudogenic_transcript | processed_pseudogene |
| 108367 | enst00000269720 | sg00000141854 | misp3-201 | 19 | 14072536 | 14075061 | + | mRNA | protein_coding |
| 108605 | enst00000587086 | sg00000141854 | misp3-202 | 19 | 14072774 | 14075062 | + | mRNA | protein_coding |
| 108707 | enst00000591982 | sg00000141854 | misp3-204 | 19 | 14072876 | 14075062 | + | lnc_RNA | retained_intron |
| 109192 | enst00000621445 | sg00000284081 | mir1199-201 | 19 | 14073361 | 14073479 | + | miRNA | mirna |
| 109413 | enst00000590772 | sg00000141854 | misp3-203 | 19 | 14073582 | 14074978 | + | mRNA | protein_coding |
| -119374 | enst00000587762 | sg00000267519 | ac020916.1-201 | 19 | 13823880 | 13842928 | - | lnc_RNA | lncrna |
| 121614 | enst00000548523 | sg00000188032 | c19orf67-203 | 19 | 14081624 | 14085783 | - | mRNA | protein_coding |
| 121620 | enst00000343945 | sg00000188032 | c19orf67-201 | 19 | 14081891 | 14085789 | - | mRNA | protein_coding |
| 121706 | enst00000547589 | sg00000188032 | c19orf67-202 | 19 | 14083533 | 14085875 | - | lnc_RNA | processed_transcript |
| -125643 | enst00000385245 | sg00000207980 | mir23a-201 | 19 | 13836587 | 13836659 | - | miRNA | mirna |
| -125785 | enst00000385073 | sg00000207808 | mir27a-201 | 19 | 13836440 | 13836517 | - | miRNA | mirna |
| -125943 | enst00000386972 | sg00000284387 | mir24-2-201 | 19 | 13836287 | 13836359 | - | miRNA | mirna |
| 126582 | enst00000533683 | sg00000141858 | samd1-202 | 19 | 14087851 | 14090751 | - | mRNA | protein_coding |
| 126844 | enst00000541938 | sg00000141858 | samd1-203 | 19 | 14090509 | 14091013 | - | lnc_RNA | processed_transcript |
| 126867 | enst00000269724 | sg00000141858 | samd1-201 | 19 | 14088429 | 14091036 | - | mRNA | protein_coding |
| 134296 | enst00000587533 | sg00000072062 | prkaca-205 | 19 | 14096371 | 14098465 | - | lnc_RNA | retained_intron |
| 137109 | enst00000588209 | sg00000072062 | prkaca-206 | 19 | 14093650 | 14101278 | - | lnc_RNA | retained_intron |
| 142691 | enst00000587372 | sg00000072062 | prkaca-204 | 19 | 14093043 | 14106860 | - | mRNA | protein_coding |
| 143235 | enst00000593092 | sg00000072062 | prkaca-210 | 19 | 14097248 | 14107404 | - | mRNA | protein_coding |
| 144221 | enst00000350356 | sg00000072062 | prkaca-202 | 19 | 14091697 | 14108390 | - | lnc_RNA | processed_transcript |
| -144603 | enst00000592227 | sg00000132003 | zswim4-203 | 19 | 13817699 | 13830415 | + | mRNA | protein_coding |
| -146983 | enst00000581753 | sg00000266770 | rn7sl619p-201 | 19 | 13815062 | 13815319 | - | ncRNA | misc_rna |
| 148478 | enst00000536649 | sg00000072062 | prkaca-203 | 19 | 14096971 | 14112647 | - | lnc_RNA | retained_intron |
| 150019 | enst00000589994 | sg00000072062 | prkaca-208 | 19 | 14093050 | 14114188 | - | mRNA | protein_coding |
| 153563 | enst00000590853 | sg00000072062 | prkaca-209 | 19 | 14092036 | 14117732 | - | mRNA | protein_coding |
| 153593 | enst00000308677 | sg00000072062 | prkaca-201 | 19 | 14091688 | 14117762 | - | mRNA | protein_coding |
| 153915 | enst00000589284 | sg00000072062 | prkaca-207 | 19 | 14102901 | 14118084 | - | mRNA | protein_coding |
| 154937 | enst00000590715 | sg00000267783 | ac022098.3-201 | 19 | 14119106 | 14119537 | + | lnc_RNA | lncrna |
| -157241 | enst00000590508 | sg00000132003 | zswim4-202 | 19 | 13805061 | 13831274 | + | mRNA | protein_coding |
| -165369 | enst00000591242 | sg00000267582 | ac020916.2-201 | 19 | 13796574 | 13796933 | - | lnc_RNA | lncrna |
| -166842 | enst00000254323 | sg00000132003 | zswim4-201 | 19 | 13795460 | 13832230 | + | mRNA | protein_coding |
| 172384 | enst00000592798 | sg00000105011 | asf1b-205 | 19 | 14120219 | 14136553 | - | mRNA | protein_coding |
| 172405 | enst00000474890 | sg00000105011 | asf1b-202 | 19 | 14121287 | 14136574 | - | mRNA | protein_coding |
| 172420 | enst00000589468 | sg00000105011 | asf1b-203 | 19 | 14120498 | 14136589 | - | mRNA | nonsense_mediated_decay |
| 172420 | enst00000263382 | sg00000105011 | asf1b-201 | 19 | 14119512 | 14136589 | - | mRNA | protein_coding |
| 172444 | enst00000590835 | sg00000105011 | asf1b-204 | 19 | 14120448 | 14136613 | - | mRNA | nonsense_mediated_decay |
| 172977 | enst00000588387 | sg00000267169 | ac022098.1-201 | 19 | 14137146 | 14171264 | + | lnc_RNA | lncrna |
| 173019 | enst00000588658 | sg00000267169 | ac022098.1-202 | 19 | 14137188 | 14155801 | + | lnc_RNA | lncrna |
| -187478 | enst00000593274 | sg00000104979 | c19orf53-206 | 19 | 13774824 | 13778462 | + | mRNA | protein_coding |
| -187735 | enst00000592760 | sg00000104979 | c19orf53-205 | 19 | 13774567 | 13778207 | + | mRNA | nonsense_mediated_decay |
| -187741 | enst00000588841 | sg00000104979 | c19orf53-203 | 19 | 13774561 | 13778403 | + | mRNA | nonsense_mediated_decay |
| -187784 | enst00000588858 | sg00000104979 | c19orf53-204 | 19 | 13774518 | 13778461 | + | mRNA | nonsense_mediated_decay |
| -187823 | enst00000221576 | sg00000104979 | c19orf53-201 | 19 | 13774479 | 13778459 | + | mRNA | protein_coding |
| -187846 | enst00000588234 | sg00000104979 | c19orf53-202 | 19 | 13774456 | 13778773 | + | mRNA | protein_coding |
| -188184 | enst00000591826 | sg00000267633 | ac008686.1-203 | 19 | 13772473 | 13774118 | - | lnc_RNA | lncrna |
| -188669 | enst00000586894 | sg00000267633 | ac008686.1-201 | 19 | 13772118 | 13773633 | - | lnc_RNA | lncrna |
| 188670 | enst00000593005 | sg00000072071 | adgrl1-208 | 19 | 14151169 | 14152839 | - | mRNA | protein_coding |
| -188671 | enst00000586297 | sg00000267633 | ac008686.1-202 | 19 | 13772406 | 13773631 | - | lnc_RNA | lncrna |
| 188681 | enst00000592164 | sg00000072071 | adgrl1-207 | 19 | 14151208 | 14152850 | - | mRNA | protein_coding |
| 191004 | enst00000592086 | sg00000267169 | ac022098.1-203 | 19 | 14155173 | 14171267 | + | lnc_RNA | lncrna |
| 196411 | enst00000588677 | sg00000072071 | adgrl1-203 | 19 | 14159489 | 14160580 | - | lnc_RNA | retained_intron |
| 197367 | enst00000589616 | sg00000072071 | adgrl1-204 | 19 | 14159175 | 14161536 | - | mRNA | protein_coding |
| -197721 | enst00000589290 | sg00000037757 | mri1-204 | 19 | 13764581 | 13768581 | + | lnc_RNA | retained_intron |
| -197753 | enst00000591688 | sg00000037757 | mri1-205 | 19 | 13764549 | 13768870 | + | lnc_RNA | retained_intron |
| -197753 | enst00000593245 | sg00000037757 | mri1-206 | 19 | 13764549 | 13768557 | + | lnc_RNA | retained_intron |
| -197770 | enst00000319545 | sg00000037757 | mri1-202 | 19 | 13764532 | 13774282 | + | mRNA | protein_coding |
| -197770 | enst00000588526 | sg00000037757 | mri1-203 | 19 | 13764532 | 13768680 | + | lnc_RNA | retained_intron |
| -197780 | enst00000040663 | sg00000037757 | mri1-201 | 19 | 13764522 | 13774282 | + | mRNA | protein_coding |
| -200911 | enst00000589669 | sg00000104957 | ccdc130-211 | 19 | 13761391 | 13762973 | + | lnc_RNA | processed_transcript |
| -203191 | enst00000585844 | sg00000104957 | ccdc130-203 | 19 | 13759111 | 13763023 | + | mRNA | protein_coding |
| -203226 | enst00000587019 | sg00000104957 | ccdc130-206 | 19 | 13759076 | 13762931 | + | lnc_RNA | processed_transcript |
| -203394 | enst00000589096 | sg00000104957 | ccdc130-210 | 19 | 13758908 | 13759627 | + | mRNA | protein_coding |
| -206094 | enst00000588809 | sg00000104957 | ccdc130-209 | 19 | 13756208 | 13759478 | + | mRNA | protein_coding |
| 206565 | enst00000591528 | sg00000072071 | adgrl1-206 | 19 | 14162948 | 14170734 | - | lnc_RNA | processed_transcript |
| 213481 | enst00000590223 | sg00000072071 | adgrl1-205 | 19 | 14170488 | 14177650 | - | lnc_RNA | retained_intron |
| -214405 | enst00000586666 | sg00000104957 | ccdc130-205 | 19 | 13747897 | 13762736 | + | mRNA | protein_coding |
| -214407 | enst00000221554 | sg00000104957 | ccdc130-201 | 19 | 13747895 | 13763289 | + | mRNA | protein_coding |
| -214438 | enst00000593174 | sg00000104957 | ccdc130-212 | 19 | 13747864 | 13763279 | + | lnc_RNA | retained_intron |
| -230535 | enst00000588071 | sg00000104957 | ccdc130-208 | 19 | 13731767 | 13759153 | + | lnc_RNA | retained_intron |
| -230540 | enst00000587098 | sg00000104957 | ccdc130-207 | 19 | 13731762 | 13732602 | + | lnc_RNA | retained_intron |
| -230542 | enst00000586600 | sg00000104957 | ccdc130-204 | 19 | 13731760 | 13763296 | + | mRNA | protein_coding |
| -230542 | enst00000540216 | sg00000104957 | ccdc130-202 | 19 | 13731760 | 13759121 | + | lnc_RNA | retained_intron |
| 242000 | enst00000361434 | sg00000072071 | adgrl1-202 | 19 | 14149953 | 14206169 | - | mRNA | protein_coding |
| 242018 | enst00000340736 | sg00000072071 | adgrl1-201 | 19 | 14147743 | 14206187 | - | mRNA | protein_coding |
| 248883 | enst00000461840 | sg00000240803 | rn7sl231p-201 | 19 | 14213052 | 14213323 | + | ncRNA | misc_rna |
| 253324 | enst00000661911 | sg00000287254 | ac011509.3-201 | 19 | 14217493 | 14219605 | + | lnc_RNA | lncrna |
| 305208 | enst00000589512 | sg00000267406 | ac011509.1-201 | 19 | 14267807 | 14269377 | - | lnc_RNA | lncrna |
| 329036 | enst00000592263 | sg00000267723 | ac011509.2-201 | 19 | 14254189 | 14293205 | - | lnc_RNA | lncrna |
| -329277 | enst00000574974 | sg00000141837 | cacna1a-205 | 19 | 13371761 | 13633025 | - | mRNA | nonsense_mediated_decay |
| -337813 | enst00000592864 | sg00000141837 | cacna1a-211 | 19 | 13518797 | 13624489 | - | mRNA | protein_coding |
| -362356 | enst00000664864 | sg00000141837 | cacna1a-260 | 19 | 13208046 | 13599946 | - | mRNA | protein_coding |
| 369574 | enst00000588275 | sg00000267147 | linc01842-201 | 19 | 14333743 | 14343916 | + | lnc_RNA | lncrna |
| 399821 | enst00000586698 | sg00000266913 | linc01841-201 | 19 | 14305458 | 14363990 | - | lnc_RNA | lncrna |
| 406027 | enst00000588438 | sg00000266913 | linc01841-202 | 19 | 14325352 | 14370196 | - | lnc_RNA | lncrna |
| 416332 | enst00000587728 | sg00000123146 | adgre5-209 | 19 | 14380501 | 14397804 | + | lnc_RNA | processed_transcript |
| 416987 | enst00000358600 | sg00000123146 | adgre5-203 | 19 | 14381156 | 14408275 | + | mRNA | protein_coding |
| 417196 | enst00000587535 | sg00000123146 | adgre5-207 | 19 | 14381365 | 14397370 | + | lnc_RNA | retained_intron |
| 417247 | enst00000587606 | sg00000123146 | adgre5-208 | 19 | 14381416 | 14391197 | + | mRNA | protein_coding |
| 417247 | enst00000586517 | sg00000123146 | adgre5-204 | 19 | 14381416 | 14397916 | + | mRNA | protein_coding |
| 417249 | enst00000591080 | sg00000123146 | adgre5-211 | 19 | 14381418 | 14391492 | + | lnc_RNA | processed_transcript |
| 417266 | enst00000357355 | sg00000123146 | adgre5-202 | 19 | 14381435 | 14408725 | + | mRNA | protein_coding |
| 417275 | enst00000242786 | sg00000123146 | adgre5-201 | 19 | 14381444 | 14408723 | + | mRNA | protein_coding |
| 417275 | enst00000592261 | sg00000123146 | adgre5-214 | 19 | 14381444 | 14397223 | + | mRNA | protein_coding |
| 432081 | enst00000591737 | sg00000123146 | adgre5-213 | 19 | 14396250 | 14397911 | + | lnc_RNA | retained_intron |
| 433245 | enst00000593028 | sg00000123146 | adgre5-216 | 19 | 14397414 | 14397980 | + | lnc_RNA | retained_intron |
| 433311 | enst00000586849 | sg00000123146 | adgre5-205 | 19 | 14397480 | 14401503 | + | lnc_RNA | retained_intron |
| 433564 | enst00000587319 | sg00000123146 | adgre5-206 | 19 | 14397733 | 14398276 | + | lnc_RNA | retained_intron |
| 433564 | enst00000592341 | sg00000123146 | adgre5-215 | 19 | 14397733 | 14398335 | + | lnc_RNA | retained_intron |
| 433564 | enst00000590567 | sg00000123146 | adgre5-210 | 19 | 14397733 | 14398268 | + | lnc_RNA | retained_intron |
| 440201 | enst00000591565 | sg00000123146 | adgre5-212 | 19 | 14404370 | 14405605 | + | lnc_RNA | retained_intron |
| -441993 | enst00000587451 | sg00000141837 | cacna1a-208 | 19 | 13518975 | 13520309 | - | lnc_RNA | processed_transcript |
| 444554 | enst00000590626 | sg00000267379 | ac008569.1-201 | 19 | 14402717 | 14408723 | - | lnc_RNA | lncrna |
| 446760 | enst00000587730 | sg00000123136 | ddx39a-206 | 19 | 14408819 | 14410929 | - | lnc_RNA | retained_intron |
| 447217 | enst00000593026 | sg00000123136 | ddx39a-221 | 19 | 14410261 | 14411386 | - | lnc_RNA | retained_intron |
| 447347 | enst00000592391 | sg00000123136 | ddx39a-217 | 19 | 14409539 | 14411516 | - | lnc_RNA | retained_intron |
| 447385 | enst00000590556 | sg00000123136 | ddx39a-214 | 19 | 14410647 | 14411554 | - | lnc_RNA | retained_intron |
| 447429 | enst00000592927 | sg00000123136 | ddx39a-219 | 19 | 14409536 | 14411598 | - | mRNA | nonsense_mediated_decay |
| 449013 | enst00000590315 | sg00000123136 | ddx39a-213 | 19 | 14410308 | 14413182 | - | mRNA | protein_coding |
| 449051 | enst00000588692 | sg00000123136 | ddx39a-208 | 19 | 14408850 | 14413220 | - | mRNA | nonsense_mediated_decay |
| 454893 | enst00000590239 | sg00000123136 | ddx39a-211 | 19 | 14411543 | 14419062 | - | mRNA | protein_coding |
| 454904 | enst00000590696 | sg00000123136 | ddx39a-215 | 19 | 14412610 | 14419073 | - | mRNA | protein_coding |
| 454914 | enst00000591275 | sg00000123136 | ddx39a-216 | 19 | 14412562 | 14419083 | - | mRNA | protein_coding |
| 454924 | enst00000586993 | sg00000123136 | ddx39a-205 | 19 | 14411560 | 14419093 | - | mRNA | protein_coding |
| 455154 | enst00000592632 | sg00000123136 | ddx39a-218 | 19 | 14412359 | 14419323 | - | lnc_RNA | retained_intron |
| 455160 | enst00000589675 | sg00000123136 | ddx39a-210 | 19 | 14410216 | 14419329 | - | mRNA | protein_coding |
| 455160 | enst00000588542 | sg00000123136 | ddx39a-207 | 19 | 14409773 | 14419329 | - | lnc_RNA | retained_intron |
| 455160 | enst00000324340 | sg00000123136 | ddx39a-202 | 19 | 14408819 | 14419329 | - | mRNA | nonsense_mediated_decay |
| 455168 | enst00000589318 | sg00000123136 | ddx39a-209 | 19 | 14408819 | 14419337 | - | lnc_RNA | retained_intron |
| 455172 | enst00000593008 | sg00000123136 | ddx39a-220 | 19 | 14412561 | 14419341 | - | lnc_RNA | processed_transcript |
| 455172 | enst00000586558 | sg00000123136 | ddx39a-204 | 19 | 14411218 | 14419341 | - | lnc_RNA | retained_intron |
| 455172 | enst00000242776 | sg00000123136 | ddx39a-201 | 19 | 14408798 | 14419341 | - | mRNA | protein_coding |
| 455211 | enst00000590260 | sg00000123136 | ddx39a-212 | 19 | 14411062 | 14419380 | - | lnc_RNA | retained_intron |
| 455214 | enst00000454233 | sg00000123136 | ddx39a-203 | 19 | 14409910 | 14419383 | - | mRNA | protein_coding |
| -455807 | enst00000635895 | sg00000141837 | cacna1a-218 | 19 | 13206446 | 13506495 | - | mRNA | protein_coding |
| -455822 | enst00000637769 | sg00000141837 | cacna1a-247 | 19 | 13206445 | 13506480 | - | mRNA | protein_coding |
| -455823 | enst00000638009 | sg00000141837 | cacna1a-257 | 19 | 13206442 | 13506479 | - | mRNA | protein_coding |
| -455823 | enst00000360228 | sg00000141837 | cacna1a-201 | 19 | 13206442 | 13506479 | - | mRNA | protein_coding |
| -455842 | enst00000637432 | sg00000141837 | cacna1a-240 | 19 | 13207274 | 13506460 | - | mRNA | protein_coding |
| -455842 | enst00000638029 | sg00000141837 | cacna1a-258 | 19 | 13207274 | 13506460 | - | mRNA | protein_coding |
| -455843 | enst00000637736 | sg00000141837 | cacna1a-246 | 19 | 13206591 | 13506459 | - | mRNA | protein_coding |
| -456030 | enst00000636389 | sg00000141837 | cacna1a-225 | 19 | 13206740 | 13506272 | - | mRNA | protein_coding |
| -456047 | enst00000573710 | sg00000141837 | cacna1a-202 | 19 | 13207302 | 13506255 | - | mRNA | protein_coding |
| -456047 | enst00000637927 | sg00000141837 | cacna1a-253 | 19 | 13208019 | 13506255 | - | mRNA | protein_coding |
| -456070 | enst00000637616 | sg00000141837 | cacna1a-243 | 19 | 13450342 | 13506232 | - | lnc_RNA | retained_intron |
| -456078 | enst00000614285 | sg00000141837 | cacna1a-214 | 19 | 13206442 | 13506224 | - | mRNA | protein_coding |
| -456078 | enst00000636549 | sg00000141837 | cacna1a-227 | 19 | 13208046 | 13506224 | - | mRNA | protein_coding |
| -456078 | enst00000637276 | sg00000141837 | cacna1a-238 | 19 | 13207661 | 13506224 | - | mRNA | protein_coding |
| -456078 | enst00000636012 | sg00000141837 | cacna1a-221 | 19 | 13207301 | 13506224 | - | mRNA | protein_coding |
| -456078 | enst00000635727 | sg00000141837 | cacna1a-215 | 19 | 13207301 | 13506224 | - | mRNA | protein_coding |
| -456190 | enst00000636966 | sg00000141837 | cacna1a-232 | 19 | 13362051 | 13506112 | - | lnc_RNA | retained_intron |
| -456225 | enst00000637966 | sg00000141837 | cacna1a-255 | 19 | 13306564 | 13506077 | - | lnc_RNA | processed_transcript |
| -456260 | enst00000637981 | sg00000141837 | cacna1a-256 | 19 | 13370791 | 13506042 | - | lnc_RNA | retained_intron |
| -456363 | enst00000593160 | sg00000141837 | cacna1a-212 | 19 | 13333640 | 13505939 | - | lnc_RNA | retained_intron |
| 468884 | enst00000585619 | sg00000123143 | pkn1-203 | 19 | 14433053 | 14446436 | + | mRNA | protein_coding |
| 469154 | enst00000585839 | sg00000123143 | pkn1-204 | 19 | 14433323 | 14471867 | + | lnc_RNA | retained_intron |
| 469188 | enst00000242783 | sg00000123143 | pkn1-201 | 19 | 14433357 | 14471859 | + | mRNA | protein_coding |
| 469250 | enst00000586557 | sg00000123143 | pkn1-207 | 19 | 14433419 | 14458242 | + | mRNA | protein_coding |
| 469315 | enst00000587429 | sg00000123143 | pkn1-210 | 19 | 14433484 | 14446458 | + | lnc_RNA | processed_transcript |
| 469324 | enst00000590097 | sg00000123143 | pkn1-212 | 19 | 14433493 | 14450461 | + | mRNA | protein_coding |
| 476091 | enst00000342216 | sg00000123143 | pkn1-202 | 19 | 14440260 | 14471866 | + | mRNA | protein_coding |
| 476204 | enst00000592794 | sg00000123143 | pkn1-214 | 19 | 14440373 | 14441434 | + | lnc_RNA | processed_transcript |
| 486637 | enst00000588200 | sg00000123143 | pkn1-211 | 19 | 14450806 | 14458079 | + | lnc_RNA | retained_intron |
| 494232 | enst00000589702 | sg00000267474 | ac008569.2-201 | 19 | 14458401 | 14459366 | + | lnc_RNA | lncrna |
| 499374 | enst00000586900 | sg00000123143 | pkn1-208 | 19 | 14463543 | 14467678 | + | lnc_RNA | retained_intron |
| 499706 | enst00000586237 | sg00000123143 | pkn1-206 | 19 | 14463875 | 14471859 | + | mRNA | protein_coding |
Source file: /hps/research1/birney/users/adrien/analyses/cancer_DNA_promethion/run_1_2_3_4/DNA_pipeline_2/results/methylation/pycometh_meth_comp_CGI_3/out.tsv.gz
MD5 hash: 9aa0e3f69cb4e12345c3758eb68a5efc