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CpG interval report generated on 20/05/20 with pycoMeth 0.4.6
Interval details
| pvalue rank | chromosome | start | end | length | number of samples | number of CpGs | pvalue | adjusted pvalue |
|---|---|---|---|---|---|---|---|---|
| #115 | 22 | 50719863 | 50721434 | 1571 | 3 | 47 | 7.97108e-17 | 6.89325e-15 |
Methylation log-likelihood ratio by CpG position
Distribution of CpG methylation log-likelihood ratio by sample
Closest transcripts TSS
| distance to tss | transcript id | gene id | transcript name | chromosome | start | end | strand | feature type | transcript biotype |
|---|---|---|---|---|---|---|---|---|---|
| 8138 | enst00000659388 | sg00000251322 | shank3-204 | 22 | 50729572 | 50731518 | + | mRNA | protein_coding |
| -14367 | enst00000664402 | sg00000251322 | shank3-205 | 22 | 50705496 | 50733298 | + | mRNA | protein_coding |
| 16705 | enst00000449652 | sg00000225929 | ac000036.1-201 | 22 | 50735825 | 50738139 | - | lnc_RNA | lncrna |
| 16762 | enst00000533930 | sg00000100312 | acr-204 | 22 | 50738196 | 50740359 | + | lnc_RNA | retained_intron |
| 16770 | enst00000216139 | sg00000100312 | acr-201 | 22 | 50738204 | 50745339 | + | mRNA | protein_coding |
| 16796 | enst00000529621 | sg00000100312 | acr-203 | 22 | 50738230 | 50740757 | + | mRNA | protein_coding |
| -21864 | enst00000673838 | sg00000251322 | shank3-206 | 22 | 50697999 | 50703918 | + | lnc_RNA | processed_transcript |
| -21864 | enst00000674010 | sg00000251322 | shank3-209 | 22 | 50697999 | 50703918 | + | lnc_RNA | retained_intron |
| -21864 | enst00000674145 | sg00000251322 | shank3-210 | 22 | 50697999 | 50703918 | + | lnc_RNA | retained_intron |
| 22086 | enst00000532913 | sg00000254499 | ac002056.2-201 | 22 | 50740593 | 50743520 | - | lnc_RNA | lncrna |
| -22299 | enst00000673995 | sg00000251322 | shank3-208 | 22 | 50697564 | 50703919 | + | mRNA | nonsense_mediated_decay |
| 22710 | enst00000527761 | sg00000100312 | acr-202 | 22 | 50744144 | 50744910 | + | lnc_RNA | processed_transcript |
| -28500 | enst00000384114 | sg00000206841 | rnu6-409p-201 | 22 | 50691260 | 50691363 | - | snRNA | snrna |
| 34000 | enst00000395613 | sg00000213683 | ac002056.1-201 | 22 | 50754675 | 50755434 | - | pseudogenic_transcript | processed_pseudogene |
| 35514 | enst00000496652 | sg00000184319 | rpl23ap82-208 | 22 | 50756948 | 50789186 | + | lnc_RNA | processed_transcript |
| -44971 | enst00000262795 | sg00000251322 | shank3-201 | 22 | 50674892 | 50733298 | + | mRNA | protein_coding |
| -45221 | enst00000445220 | sg00000251322 | shank3-203 | 22 | 50674642 | 50731312 | + | mRNA | protein_coding |
| -45448 | enst00000673971 | sg00000251322 | shank3-207 | 22 | 50674415 | 50733298 | + | mRNA | nonsense_mediated_decay |
| -45448 | enst00000414786 | sg00000251322 | shank3-202 | 22 | 50674415 | 50733298 | + | lnc_RNA | processed_transcript |
| -47149 | enst00000661649 | sg00000286508 | ac000050.3-201 | 22 | 50672714 | 50674174 | + | lnc_RNA | lncrna |
| 49068 | enst00000465063 | sg00000079974 | rabl2b-213 | 22 | 50767509 | 50770502 | - | lnc_RNA | processed_transcript |
| -50059 | enst00000391267 | sg00000212569 | ac000050.1-201 | 22 | 50669804 | 50669901 | + | ncRNA | misc_rna |
| 54399 | enst00000482308 | sg00000079974 | rabl2b-215 | 22 | 50769527 | 50775833 | - | lnc_RNA | retained_intron |
| 60880 | enst00000425098 | sg00000079974 | rabl2b-208 | 22 | 50767506 | 50782314 | - | mRNA | nonsense_mediated_decay |
| 61611 | enst00000413505 | sg00000079974 | rabl2b-207 | 22 | 50782234 | 50783045 | - | mRNA | protein_coding |
| 61820 | enst00000467796 | sg00000184319 | rpl23ap82-205 | 22 | 50783254 | 50799305 | + | lnc_RNA | processed_transcript |
| 61852 | enst00000464678 | sg00000079974 | rabl2b-211 | 22 | 50769782 | 50783286 | - | lnc_RNA | retained_intron |
| 62166 | enst00000468451 | sg00000079974 | rabl2b-214 | 22 | 50775771 | 50783600 | - | mRNA | nonsense_mediated_decay |
| 62187 | enst00000354869 | sg00000079974 | rabl2b-201 | 22 | 50767504 | 50783621 | - | mRNA | protein_coding |
| 62196 | enst00000395590 | sg00000079974 | rabl2b-202 | 22 | 50771210 | 50783630 | - | mRNA | protein_coding |
| 62196 | enst00000464740 | sg00000079974 | rabl2b-212 | 22 | 50777660 | 50783630 | - | lnc_RNA | retained_intron |
| 62204 | enst00000436958 | sg00000079974 | rabl2b-210 | 22 | 50767530 | 50783638 | - | mRNA | nonsense_mediated_decay |
| 62208 | enst00000395593 | sg00000079974 | rabl2b-204 | 22 | 50767506 | 50783642 | - | mRNA | protein_coding |
| 62225 | enst00000395598 | sg00000079974 | rabl2b-206 | 22 | 50767506 | 50783659 | - | mRNA | protein_coding |
| 62228 | enst00000395591 | sg00000079974 | rabl2b-203 | 22 | 50767506 | 50783662 | - | mRNA | protein_coding |
| 62228 | enst00000435118 | sg00000079974 | rabl2b-209 | 22 | 50767501 | 50783662 | - | mRNA | protein_coding |
| 62229 | enst00000395595 | sg00000079974 | rabl2b-205 | 22 | 50767506 | 50783663 | - | mRNA | protein_coding |
| 62323 | enst00000462238 | sg00000184319 | rpl23ap82-203 | 22 | 50783757 | 50799434 | + | lnc_RNA | processed_transcript |
| 62341 | enst00000463325 | sg00000184319 | rpl23ap82-204 | 22 | 50783775 | 50788954 | + | lnc_RNA | processed_transcript |
| 62363 | enst00000494075 | sg00000184319 | rpl23ap82-207 | 22 | 50783797 | 50789353 | + | lnc_RNA | processed_transcript |
| 62378 | enst00000423888 | sg00000184319 | rpl23ap82-201 | 22 | 50783812 | 50789172 | + | lnc_RNA | processed_transcript |
| 62416 | enst00000651346 | sg00000184319 | rpl23ap82-209 | 22 | 50783850 | 50799441 | + | lnc_RNA | processed_transcript |
| 62428 | enst00000480246 | sg00000184319 | rpl23ap82-206 | 22 | 50783862 | 50801309 | + | lnc_RNA | processed_transcript |
| 77221 | enst00000427528 | sg00000184319 | rpl23ap82-202 | 22 | 50798655 | 50799123 | + | pseudogenic_transcript | transcribed_unprocessed_pseudogene |
| -91690 | enst00000453344 | sg00000100299 | arsa-205 | 22 | 50625029 | 50628173 | - | mRNA | protein_coding |
| -91693 | enst00000356098 | sg00000100299 | arsa-202 | 22 | 50625018 | 50628170 | - | mRNA | protein_coding |
| -91693 | enst00000551731 | sg00000100299 | arsa-206 | 22 | 50626591 | 50628170 | - | lnc_RNA | retained_intron |
| -91704 | enst00000395619 | sg00000100299 | arsa-203 | 22 | 50625033 | 50628159 | - | mRNA | protein_coding |
| -91708 | enst00000395621 | sg00000100299 | arsa-204 | 22 | 50625028 | 50628155 | - | mRNA | protein_coding |
| -91711 | enst00000216124 | sg00000100299 | arsa-201 | 22 | 50622754 | 50628152 | - | mRNA | protein_coding |
| -94207 | enst00000608497 | sg00000100299 | arsa-207 | 22 | 50622754 | 50625656 | - | mRNA | nonsense_mediated_decay |
| -96537 | enst00000610191 | sg00000100299 | arsa-208 | 22 | 50622754 | 50623326 | - | lnc_RNA | processed_transcript |
| -116730 | enst00000008876 | sg00000008735 | mapk8ip2-201 | 22 | 50603133 | 50613981 | + | lnc_RNA | retained_intron |
| -118408 | enst00000463053 | sg00000100288 | chkb-202 | 22 | 50580357 | 50601455 | - | lnc_RNA | processed_transcript |
| -119070 | enst00000329492 | sg00000008735 | mapk8ip2-202 | 22 | 50600793 | 50613978 | + | mRNA | protein_coding |
| -122711 | enst00000609758 | sg00000272940 | u62317.3-201 | 22 | 50597152 | 50597599 | + | lnc_RNA | lncrna |
| -132990 | enst00000654727 | sg00000205559 | chkb-dt-205 | 22 | 50586873 | 50595634 | + | lnc_RNA | lncrna |
| -135309 | enst00000652967 | sg00000205559 | chkb-dt-203 | 22 | 50584554 | 50588027 | + | lnc_RNA | lncrna |
| -135458 | enst00000662119 | sg00000205559 | chkb-dt-207 | 22 | 50584405 | 50588035 | + | lnc_RNA | lncrna |
| -135520 | enst00000654355 | sg00000205559 | chkb-dt-204 | 22 | 50584343 | 50588029 | + | lnc_RNA | lncrna |
| -136684 | enst00000666183 | sg00000205559 | chkb-dt-208 | 22 | 50583179 | 50584182 | + | lnc_RNA | lncrna |
| -136707 | enst00000648558 | sg00000205559 | chkb-dt-202 | 22 | 50583156 | 50587640 | + | lnc_RNA | lncrna |
| -136743 | enst00000656328 | sg00000205559 | chkb-dt-206 | 22 | 50583120 | 50584333 | + | lnc_RNA | lncrna |
| -136837 | enst00000380711 | sg00000205559 | chkb-dt-201 | 22 | 50583026 | 50583877 | + | lnc_RNA | lncrna |
| -136864 | enst00000406938 | sg00000100288 | chkb-201 | 22 | 50578949 | 50582999 | - | mRNA | protein_coding |
| -136898 | enst00000492556 | sg00000254413 | chkb-cpt1b-203 | 22 | 50568869 | 50582965 | - | lnc_RNA | retained_intron |
| -137009 | enst00000492582 | sg00000100288 | chkb-212 | 22 | 50578959 | 50582854 | - | lnc_RNA | retained_intron |
| -137009 | enst00000476289 | sg00000100288 | chkb-207 | 22 | 50580357 | 50582854 | - | lnc_RNA | retained_intron |
| -137018 | enst00000481673 | sg00000100288 | chkb-209 | 22 | 50578963 | 50582845 | - | lnc_RNA | retained_intron |
| -137039 | enst00000484266 | sg00000100288 | chkb-210 | 22 | 50578963 | 50582824 | - | lnc_RNA | retained_intron |
| -137043 | enst00000479003 | sg00000100288 | chkb-208 | 22 | 50578966 | 50582820 | - | lnc_RNA | retained_intron |
| -137405 | enst00000468532 | sg00000100288 | chkb-205 | 22 | 50579450 | 50582458 | - | lnc_RNA | retained_intron |
| -137443 | enst00000465842 | sg00000100288 | chkb-204 | 22 | 50581607 | 50582420 | - | lnc_RNA | retained_intron |
| -139083 | enst00000489453 | sg00000100288 | chkb-211 | 22 | 50579804 | 50580780 | - | lnc_RNA | retained_intron |
| -139260 | enst00000471515 | sg00000100288 | chkb-206 | 22 | 50578963 | 50580603 | - | lnc_RNA | processed_transcript |
| -139610 | enst00000464225 | sg00000100288 | chkb-203 | 22 | 50578963 | 50580253 | - | lnc_RNA | processed_transcript |
| -139864 | enst00000452668 | sg00000254413 | chkb-cpt1b-201 | 22 | 50577819 | 50579999 | - | lnc_RNA | processed_transcript |
| -140111 | enst00000453634 | sg00000254413 | chkb-cpt1b-202 | 22 | 50568995 | 50579752 | - | mRNA | nonsense_mediated_decay |
| -141398 | enst00000460853 | sg00000205560 | cpt1b-208 | 22 | 50576626 | 50578465 | - | lnc_RNA | retained_intron |
| -141408 | enst00000395650 | sg00000205560 | cpt1b-203 | 22 | 50569084 | 50578455 | - | mRNA | protein_coding |
| -141446 | enst00000312108 | sg00000205560 | cpt1b-201 | 22 | 50568862 | 50578417 | - | mRNA | protein_coding |
| -141617 | enst00000417176 | sg00000205560 | cpt1b-205 | 22 | 50576940 | 50578246 | - | mRNA | protein_coding |
| -141843 | enst00000405237 | sg00000205560 | cpt1b-204 | 22 | 50568861 | 50578020 | - | mRNA | protein_coding |
| -141948 | enst00000457250 | sg00000205560 | cpt1b-207 | 22 | 50569338 | 50577915 | - | mRNA | protein_coding |
| -141948 | enst00000360719 | sg00000205560 | cpt1b-202 | 22 | 50569338 | 50577915 | - | mRNA | protein_coding |
| -141995 | enst00000461117 | sg00000205560 | cpt1b-209 | 22 | 50576707 | 50577868 | - | lnc_RNA | retained_intron |
| -142960 | enst00000476790 | sg00000205560 | cpt1b-211 | 22 | 50576056 | 50576903 | - | lnc_RNA | retained_intron |
| -143799 | enst00000423069 | sg00000205560 | cpt1b-206 | 22 | 50572875 | 50576064 | - | mRNA | nonsense_mediated_decay |
| -144881 | enst00000479886 | sg00000205560 | cpt1b-212 | 22 | 50574365 | 50574982 | - | lnc_RNA | retained_intron |
| -146763 | enst00000475238 | sg00000205560 | cpt1b-210 | 22 | 50571883 | 50573100 | - | lnc_RNA | retained_intron |
| -147566 | enst00000497224 | sg00000205560 | cpt1b-213 | 22 | 50570348 | 50572297 | - | lnc_RNA | retained_intron |
| -156944 | enst00000406915 | sg00000217442 | syce3-202 | 22 | 50551112 | 50562919 | - | mRNA | protein_coding |
| -163431 | enst00000402753 | sg00000217442 | syce3-201 | 22 | 50551197 | 50556432 | - | mRNA | protein_coding |
| -171830 | enst00000395676 | sg00000130487 | klhdc7b-201 | 22 | 50548033 | 50551022 | + | mRNA | protein_coding |
| -173448 | enst00000434237 | sg00000130487 | klhdc7b-202 | 22 | 50546415 | 50547652 | + | lnc_RNA | processed_transcript |
| -173964 | enst00000648057 | sg00000130487 | klhdc7b-203 | 22 | 50545899 | 50551023 | + | mRNA | protein_coding |
| -176957 | enst00000609178 | sg00000272666 | u62317.1-201 | 22 | 50542305 | 50542906 | - | lnc_RNA | lncrna |
| -178755 | enst00000609268 | sg00000273272 | u62317.4-201 | 22 | 50541108 | 50543011 | + | lnc_RNA | lncrna |
| -187283 | enst00000437588 | sg00000177989 | odf3b-206 | 22 | 50531745 | 50532580 | - | mRNA | protein_coding |
| -187284 | enst00000329363 | sg00000177989 | odf3b-201 | 22 | 50530409 | 50532579 | - | mRNA | protein_coding |
| -187679 | enst00000401779 | sg00000177989 | odf3b-202 | 22 | 50530409 | 50532184 | - | mRNA | protein_coding |
| -187716 | enst00000405135 | sg00000177989 | odf3b-204 | 22 | 50530441 | 50532147 | - | mRNA | protein_coding |
| -187755 | enst00000403326 | sg00000177989 | odf3b-203 | 22 | 50530426 | 50532108 | - | mRNA | protein_coding |
| -187786 | enst00000428989 | sg00000177989 | odf3b-205 | 22 | 50530480 | 50532077 | - | mRNA | protein_coding |
| -188041 | enst00000468249 | sg00000177989 | odf3b-208 | 22 | 50529710 | 50531822 | - | lnc_RNA | retained_intron |
| -188184 | enst00000469660 | sg00000177989 | odf3b-209 | 22 | 50530638 | 50531679 | - | lnc_RNA | retained_intron |
| -188440 | enst00000463472 | sg00000177989 | odf3b-207 | 22 | 50530539 | 50531423 | - | lnc_RNA | retained_intron |
| -189831 | enst00000395678 | sg00000025708 | tymp-202 | 22 | 50525756 | 50530032 | - | mRNA | protein_coding |
| -189845 | enst00000650719 | sg00000025708 | tymp-209 | 22 | 50526310 | 50530018 | - | mRNA | protein_coding |
| -189845 | enst00000476284 | sg00000025708 | tymp-206 | 22 | 50525757 | 50530018 | - | lnc_RNA | retained_intron |
| -189851 | enst00000252029 | sg00000025708 | tymp-201 | 22 | 50525752 | 50530012 | - | mRNA | protein_coding |
| -189851 | enst00000395680 | sg00000025708 | tymp-203 | 22 | 50525752 | 50530012 | - | mRNA | protein_coding |
| -189851 | enst00000395681 | sg00000025708 | tymp-204 | 22 | 50525752 | 50530012 | - | mRNA | protein_coding |
| -189851 | enst00000651196 | sg00000025708 | tymp-211 | 22 | 50529141 | 50530012 | - | mRNA | protein_coding |
| -189851 | enst00000652237 | sg00000025708 | tymp-215 | 22 | 50528685 | 50530012 | - | lnc_RNA | retained_intron |
| -189851 | enst00000651906 | sg00000025708 | tymp-214 | 22 | 50527197 | 50530012 | - | lnc_RNA | retained_intron |
| -189851 | enst00000487162 | sg00000025708 | tymp-207 | 22 | 50527792 | 50530012 | - | lnc_RNA | retained_intron |
| -189852 | enst00000651401 | sg00000025708 | tymp-212 | 22 | 50526381 | 50530011 | - | mRNA | protein_coding |
| -189867 | enst00000487577 | sg00000025708 | tymp-208 | 22 | 50525755 | 50529996 | - | mRNA | protein_coding |
| -189873 | enst00000425169 | sg00000025708 | tymp-205 | 22 | 50525785 | 50529990 | - | mRNA | protein_coding |
| -190015 | enst00000651095 | sg00000025708 | tymp-210 | 22 | 50528956 | 50529848 | - | lnc_RNA | retained_intron |
| -190563 | enst00000652352 | sg00000025708 | tymp-216 | 22 | 50526690 | 50529300 | - | mRNA | nonsense_mediated_decay |
| -192174 | enst00000652401 | sg00000025708 | tymp-217 | 22 | 50525854 | 50527689 | - | mRNA | protein_coding |
| -193402 | enst00000543927 | sg00000284194 | sco2-204 | 22 | 50523573 | 50526461 | - | mRNA | protein_coding |
| -193526 | enst00000651490 | sg00000025708 | tymp-213 | 22 | 50525752 | 50526337 | - | mRNA | protein_coding |
| -193718 | enst00000638598 | sg00000284194 | sco2-205 | 22 | 50523906 | 50526145 | - | mRNA | protein_coding |
| -193718 | enst00000535425 | sg00000284194 | sco2-203 | 22 | 50523568 | 50526145 | - | mRNA | protein_coding |
| -194257 | enst00000395693 | sg00000284194 | sco2-202 | 22 | 50523568 | 50525606 | - | mRNA | protein_coding |
| -194259 | enst00000252785 | sg00000284194 | sco2-201 | 22 | 50523596 | 50525604 | - | mRNA | protein_coding |
| -195937 | enst00000608319 | sg00000272821 | u62317.2-201 | 22 | 50523926 | 50524780 | + | lnc_RNA | lncrna |
| -197338 | enst00000522304 | sg00000025770 | ncaph2-209 | 22 | 50522525 | 50523471 | + | mRNA | protein_coding |
| -199453 | enst00000522048 | sg00000025770 | ncaph2-208 | 22 | 50520410 | 50522569 | + | lnc_RNA | retained_intron |
| -200316 | enst00000520297 | sg00000025770 | ncaph2-207 | 22 | 50519547 | 50522418 | + | lnc_RNA | processed_transcript |
| -211603 | enst00000299821 | sg00000025770 | ncaph2-201 | 22 | 50508260 | 50523472 | + | mRNA | protein_coding |
| -211604 | enst00000418794 | sg00000025770 | ncaph2-204 | 22 | 50508259 | 50518058 | + | mRNA | nonsense_mediated_decay |
| -211617 | enst00000523045 | sg00000025770 | ncaph2-210 | 22 | 50508246 | 50521589 | + | mRNA | protein_coding |
| -211618 | enst00000518394 | sg00000025770 | ncaph2-206 | 22 | 50508245 | 50518276 | + | mRNA | nonsense_mediated_decay |
| -211619 | enst00000395701 | sg00000025770 | ncaph2-203 | 22 | 50508244 | 50523472 | + | mRNA | protein_coding |
| -211620 | enst00000395698 | sg00000025770 | ncaph2-202 | 22 | 50508243 | 50519752 | + | mRNA | protein_coding |
| -211639 | enst00000420993 | sg00000025770 | ncaph2-205 | 22 | 50508224 | 50524780 | + | mRNA | protein_coding |
| -212161 | enst00000474879 | sg00000100258 | lmf2-202 | 22 | 50502949 | 50507702 | - | mRNA | protein_coding |
| -212179 | enst00000216080 | sg00000100258 | lmf2-201 | 22 | 50502951 | 50507684 | - | mRNA | protein_coding |
| -212613 | enst00000507607 | sg00000100258 | lmf2-205 | 22 | 50506396 | 50507250 | - | lnc_RNA | retained_intron |
| -212697 | enst00000505981 | sg00000100258 | lmf2-204 | 22 | 50505696 | 50507166 | - | lnc_RNA | processed_transcript |
| -213643 | enst00000514938 | sg00000100258 | lmf2-206 | 22 | 50504834 | 50506220 | - | lnc_RNA | retained_intron |
| -214606 | enst00000504717 | sg00000100258 | lmf2-203 | 22 | 50503261 | 50505257 | - | lnc_RNA | retained_intron |
| -232478 | enst00000451761 | sg00000100253 | miox-204 | 22 | 50487385 | 50489976 | + | mRNA | protein_coding |
| -232987 | enst00000395732 | sg00000100253 | miox-202 | 22 | 50486876 | 50490648 | + | mRNA | protein_coding |
| -233004 | enst00000216075 | sg00000100253 | miox-201 | 22 | 50486859 | 50490648 | + | mRNA | protein_coding |
| -233079 | enst00000395733 | sg00000100253 | miox-203 | 22 | 50486784 | 50490036 | + | mRNA | protein_coding |
| -238307 | enst00000395738 | sg00000128165 | adm2-202 | 22 | 50481556 | 50486440 | + | mRNA | protein_coding |
| -238320 | enst00000395737 | sg00000128165 | adm2-201 | 22 | 50481543 | 50486437 | + | mRNA | protein_coding |
| -244828 | enst00000380817 | sg00000100241 | sbf1-202 | 22 | 50445000 | 50475035 | - | mRNA | protein_coding |
| -244921 | enst00000348911 | sg00000100241 | sbf1-201 | 22 | 50446806 | 50474942 | - | mRNA | protein_coding |
| -245014 | enst00000399627 | sg00000100241 | sbf1-203 | 22 | 50466431 | 50474849 | - | lnc_RNA | retained_intron |
| -252508 | enst00000477234 | sg00000100241 | sbf1-208 | 22 | 50466196 | 50467355 | - | lnc_RNA | retained_intron |
| -262516 | enst00000476293 | sg00000100241 | sbf1-207 | 22 | 50456589 | 50457347 | - | lnc_RNA | processed_transcript |
| -263874 | enst00000470434 | sg00000100241 | sbf1-205 | 22 | 50446826 | 50455989 | - | lnc_RNA | retained_intron |
| -264486 | enst00000418590 | sg00000100241 | sbf1-204 | 22 | 50446810 | 50455377 | - | mRNA | protein_coding |
| -272254 | enst00000473724 | sg00000100241 | sbf1-206 | 22 | 50447083 | 50447609 | - | lnc_RNA | retained_intron |
| -276776 | enst00000470046 | sg00000100239 | ppp6r2-207 | 22 | 50443087 | 50444378 | + | lnc_RNA | retained_intron |
| -280110 | enst00000473283 | sg00000100239 | ppp6r2-208 | 22 | 50439753 | 50441074 | + | lnc_RNA | retained_intron |
| -296258 | enst00000427222 | sg00000100239 | ppp6r2-206 | 22 | 50423605 | 50444371 | + | mRNA | protein_coding |
| -300421 | enst00000401672 | sg00000100239 | ppp6r2-205 | 22 | 50419442 | 50444390 | + | mRNA | protein_coding |
| -347791 | enst00000216061 | sg00000100239 | ppp6r2-201 | 22 | 50372072 | 50444391 | + | mRNA | protein_coding |
| -376532 | enst00000395744 | sg00000100239 | ppp6r2-204 | 22 | 50343331 | 50444374 | + | mRNA | protein_coding |
| -376536 | enst00000612753 | sg00000100239 | ppp6r2-209 | 22 | 50343327 | 50445090 | + | mRNA | protein_coding |
| -376540 | enst00000395741 | sg00000100239 | ppp6r2-203 | 22 | 50343323 | 50444374 | + | mRNA | protein_coding |
| -376559 | enst00000359139 | sg00000100239 | ppp6r2-202 | 22 | 50343304 | 50445090 | + | mRNA | protein_coding |
| -392851 | enst00000413817 | sg00000205593 | dennd6b-201 | 22 | 50309030 | 50327012 | - | mRNA | protein_coding |
| -392886 | enst00000495607 | sg00000205593 | dennd6b-205 | 22 | 50311966 | 50326977 | - | lnc_RNA | retained_intron |
| -400768 | enst00000433760 | sg00000205593 | dennd6b-202 | 22 | 50314822 | 50319095 | - | mRNA | protein_coding |
| -400893 | enst00000460087 | sg00000205593 | dennd6b-203 | 22 | 50316654 | 50318970 | - | lnc_RNA | retained_intron |
| -400896 | enst00000471942 | sg00000205593 | dennd6b-204 | 22 | 50314203 | 50318967 | - | lnc_RNA | retained_intron |
| -403828 | enst00000623684 | sg00000279182 | cr559946.2-201 | 22 | 50316035 | 50317025 | + | lnc_RNA | lncrna |
| -405232 | enst00000453835 | sg00000227484 | cr559946.1-201 | 22 | 50314631 | 50316008 | + | lnc_RNA | lncrna |
| -412217 | enst00000359337 | sg00000196576 | plxnb2-201 | 22 | 50274979 | 50307646 | - | mRNA | protein_coding |
| -412236 | enst00000449103 | sg00000196576 | plxnb2-207 | 22 | 50274979 | 50307627 | - | mRNA | protein_coding |
| -412260 | enst00000425954 | sg00000196576 | plxnb2-203 | 22 | 50290100 | 50307603 | - | mRNA | protein_coding |
| -418401 | enst00000432455 | sg00000196576 | plxnb2-205 | 22 | 50287987 | 50301462 | - | mRNA | protein_coding |
| -430302 | enst00000411680 | sg00000196576 | plxnb2-202 | 22 | 50277853 | 50289561 | - | mRNA | protein_coding |
| -433610 | enst00000496720 | sg00000196576 | plxnb2-212 | 22 | 50283338 | 50286253 | - | lnc_RNA | processed_transcript |
| -434020 | enst00000434732 | sg00000196576 | plxnb2-206 | 22 | 50284167 | 50285843 | - | mRNA | protein_coding |
| -436795 | enst00000610984 | sg00000196576 | plxnb2-213 | 22 | 50274979 | 50283068 | - | mRNA | protein_coding |
| -436983 | enst00000427829 | sg00000196576 | plxnb2-204 | 22 | 50281574 | 50282880 | - | mRNA | protein_coding |
| -437301 | enst00000479701 | sg00000196576 | plxnb2-209 | 22 | 50274979 | 50282562 | - | lnc_RNA | retained_intron |
| -437857 | enst00000492578 | sg00000196576 | plxnb2-211 | 22 | 50281127 | 50282006 | - | lnc_RNA | retained_intron |
| -437929 | enst00000463165 | sg00000196576 | plxnb2-208 | 22 | 50274985 | 50281934 | - | lnc_RNA | retained_intron |
| -438885 | enst00000614805 | sg00000196576 | plxnb2-214 | 22 | 50277635 | 50280978 | - | mRNA | protein_coding |
| -441023 | enst00000479818 | sg00000196576 | plxnb2-210 | 22 | 50274979 | 50278840 | - | lnc_RNA | retained_intron |
| -449096 | enst00000495277 | sg00000185386 | mapk11-204 | 22 | 50267138 | 50270767 | - | lnc_RNA | processed_transcript |
| -449470 | enst00000395764 | sg00000185386 | mapk11-202 | 22 | 50263715 | 50270393 | - | mRNA | nonsense_mediated_decay |
| -449470 | enst00000417877 | sg00000185386 | mapk11-203 | 22 | 50263739 | 50270393 | - | mRNA | nonsense_mediated_decay |
| -449483 | enst00000330651 | sg00000185386 | mapk11-201 | 22 | 50263713 | 50270380 | - | mRNA | protein_coding |
| -458147 | enst00000622558 | sg00000188130 | mapk12-211 | 22 | 50252903 | 50261716 | - | mRNA | protein_coding |
| -458155 | enst00000467891 | sg00000188130 | mapk12-204 | 22 | 50252920 | 50261708 | - | lnc_RNA | retained_intron |
| -458180 | enst00000215659 | sg00000188130 | mapk12-201 | 22 | 50252901 | 50261683 | - | mRNA | protein_coding |
| -458318 | enst00000488504 | sg00000188130 | mapk12-206 | 22 | 50252903 | 50261545 | - | lnc_RNA | retained_intron |
| -458320 | enst00000395778 | sg00000188130 | mapk12-202 | 22 | 50257689 | 50261543 | - | mRNA | protein_coding |
| -458555 | enst00000395780 | sg00000188130 | mapk12-203 | 22 | 50252903 | 50261308 | - | mRNA | protein_coding |
| -458632 | enst00000482969 | sg00000188130 | mapk12-205 | 22 | 50253788 | 50261231 | - | lnc_RNA | retained_intron |
| -458694 | enst00000492218 | sg00000188130 | mapk12-207 | 22 | 50257563 | 50261169 | - | lnc_RNA | processed_transcript |
| -458720 | enst00000497036 | sg00000188130 | mapk12-209 | 22 | 50245450 | 50261143 | - | lnc_RNA | processed_transcript |
| -462756 | enst00000496942 | sg00000188130 | mapk12-208 | 22 | 50253781 | 50257107 | - | lnc_RNA | retained_intron |
| -463710 | enst00000497738 | sg00000188130 | mapk12-210 | 22 | 50253853 | 50256153 | - | lnc_RNA | retained_intron |
| -468458 | enst00000626012 | sg00000100429 | hdac10-222 | 22 | 50245186 | 50251405 | - | mRNA | protein_coding |
| -468458 | enst00000497483 | sg00000100429 | hdac10-219 | 22 | 50250119 | 50251405 | - | lnc_RNA | processed_transcript |
| -468478 | enst00000470965 | sg00000100429 | hdac10-208 | 22 | 50249868 | 50251385 | - | lnc_RNA | processed_transcript |
| -468497 | enst00000498366 | sg00000100429 | hdac10-221 | 22 | 50245442 | 50251366 | - | lnc_RNA | processed_transcript |
| -468598 | enst00000216271 | sg00000100429 | hdac10-201 | 22 | 50245183 | 50251265 | - | mRNA | protein_coding |
| -468602 | enst00000415993 | sg00000100429 | hdac10-203 | 22 | 50245183 | 50251261 | - | mRNA | nonsense_mediated_decay |
| -468621 | enst00000483222 | sg00000100429 | hdac10-214 | 22 | 50245442 | 50251242 | - | lnc_RNA | processed_transcript |
| -468623 | enst00000448072 | sg00000100429 | hdac10-205 | 22 | 50245442 | 50251240 | - | mRNA | protein_coding |
| -468635 | enst00000489424 | sg00000100429 | hdac10-216 | 22 | 50249859 | 50251228 | - | lnc_RNA | processed_transcript |
| -468784 | enst00000429374 | sg00000100429 | hdac10-204 | 22 | 50245405 | 50251079 | - | mRNA | nonsense_mediated_decay |
| -468831 | enst00000454936 | sg00000100429 | hdac10-206 | 22 | 50245442 | 50251032 | - | mRNA | nonsense_mediated_decay |
| -468831 | enst00000349505 | sg00000100429 | hdac10-202 | 22 | 50245507 | 50251032 | - | mRNA | protein_coding |
| -468891 | enst00000482213 | sg00000100429 | hdac10-213 | 22 | 50250257 | 50250972 | - | lnc_RNA | retained_intron |
| -468973 | enst00000496909 | sg00000100429 | hdac10-218 | 22 | 50248695 | 50250890 | - | lnc_RNA | processed_transcript |
| -469608 | enst00000488270 | sg00000100429 | hdac10-215 | 22 | 50249287 | 50250255 | - | lnc_RNA | retained_intron |
| -470655 | enst00000477814 | sg00000100429 | hdac10-212 | 22 | 50245450 | 50249208 | - | lnc_RNA | retained_intron |
| -470660 | enst00000470378 | sg00000100429 | hdac10-207 | 22 | 50247908 | 50249203 | - | lnc_RNA | retained_intron |
| -470788 | enst00000476310 | sg00000100429 | hdac10-211 | 22 | 50247696 | 50249075 | - | lnc_RNA | retained_intron |
| -470823 | enst00000471375 | sg00000100429 | hdac10-209 | 22 | 50246329 | 50249040 | - | lnc_RNA | retained_intron |
| -471408 | enst00000475965 | sg00000100429 | hdac10-210 | 22 | 50247138 | 50248455 | - | lnc_RNA | retained_intron |
| -471491 | enst00000496235 | sg00000100429 | hdac10-217 | 22 | 50245979 | 50248372 | - | lnc_RNA | retained_intron |
| -471915 | enst00000497952 | sg00000100429 | hdac10-220 | 22 | 50245791 | 50247948 | - | lnc_RNA | retained_intron |
| -474840 | enst00000248846 | sg00000128159 | tubgcp6-201 | 22 | 50217694 | 50245023 | - | mRNA | protein_coding |
| -474871 | enst00000498611 | sg00000128159 | tubgcp6-208 | 22 | 50217689 | 50244992 | - | lnc_RNA | retained_intron |
| -474892 | enst00000439308 | sg00000128159 | tubgcp6-204 | 22 | 50217689 | 50244971 | - | mRNA | protein_coding |
| -479503 | enst00000434349 | sg00000128159 | tubgcp6-203 | 22 | 50226735 | 50240360 | - | mRNA | protein_coding |
| -493672 | enst00000473946 | sg00000128159 | tubgcp6-205 | 22 | 50222987 | 50226191 | - | lnc_RNA | processed_transcript |
| -493674 | enst00000491449 | sg00000128159 | tubgcp6-207 | 22 | 50217694 | 50226189 | - | lnc_RNA | processed_transcript |
| -495271 | enst00000489511 | sg00000128159 | tubgcp6-206 | 22 | 50221760 | 50224592 | - | lnc_RNA | processed_transcript |
| -499447 | enst00000425018 | sg00000128159 | tubgcp6-202 | 22 | 50217694 | 50220416 | - | mRNA | protein_coding |
Source file: /hps/research1/birney/users/adrien/analyses/cancer_DNA_promethion/run_1_2_3_4/DNA_pipeline_2/results/methylation/pycometh_meth_comp_CGI_3/out.tsv.gz
MD5 hash: 9aa0e3f69cb4e12345c3758eb68a5efc