pvalue rank | chromosome | start | end | length | number of samples | number of CpGs | pvalue | adjusted pvalue |
---|---|---|---|---|---|---|---|---|
#114 | 6 | 3224545 | 3225483 | 938 | 3 | 37 | 7.56115e-17 | 6.59611e-15 |
distance to tss | transcript id | gene id | transcript name | chromosome | start | end | strand | feature type | transcript biotype |
---|---|---|---|---|---|---|---|---|---|
2170 | enst00000259818 | sg00000137285 | tubb2b-201 | 6 | 3224277 | 3227653 | - | mRNA | protein_coding |
5920 | enst00000509933 | sg00000180822 | psmg4-210 | 6 | 3231403 | 3270835 | + | mRNA | nonsense_mediated_decay |
6247 | enst00000473006 | sg00000137285 | tubb2b-202 | 6 | 3224283 | 3231730 | - | lnc_RNA | processed_transcript |
6324 | enst00000380306 | sg00000180822 | psmg4-203 | 6 | 3231807 | 3267781 | + | mRNA | protein_coding |
6346 | enst00000416079 | sg00000180822 | psmg4-204 | 6 | 3231829 | 3237865 | + | lnc_RNA | processed_transcript |
-28761 | enst00000656983 | sg00000230269 | linc02525-203 | 6 | 3182626 | 3195784 | - | lnc_RNA | lncrna |
-28761 | enst00000435043 | sg00000230269 | linc02525-202 | 6 | 3182626 | 3195784 | - | lnc_RNA | lncrna |
-28761 | enst00000425384 | sg00000230269 | linc02525-201 | 6 | 3182630 | 3195784 | - | lnc_RNA | lncrna |
33411 | enst00000438998 | sg00000180822 | psmg4-206 | 6 | 3258894 | 3268049 | + | mRNA | protein_coding |
33414 | enst00000380305 | sg00000180822 | psmg4-202 | 6 | 3258897 | 3267779 | + | mRNA | protein_coding |
33469 | enst00000419065 | sg00000180822 | psmg4-205 | 6 | 3258952 | 3267781 | + | mRNA | protein_coding |
33478 | enst00000473000 | sg00000180822 | psmg4-209 | 6 | 3258961 | 3268050 | + | mRNA | protein_coding |
33494 | enst00000324987 | sg00000180822 | psmg4-201 | 6 | 3258977 | 3267920 | + | mRNA | nonsense_mediated_decay |
33501 | enst00000451246 | sg00000180822 | psmg4-207 | 6 | 3258984 | 3303373 | + | mRNA | protein_coding |
33577 | enst00000454610 | sg00000180822 | psmg4-208 | 6 | 3259060 | 3291984 | + | mRNA | protein_coding |
-44781 | enst00000404155 | sg00000216819 | tubb2bp1-201 | 6 | 3177044 | 3179764 | - | pseudogenic_transcript | unprocessed_pseudogene |
58637 | enst00000482874 | sg00000137266 | slc22a23-208 | 6 | 3273356 | 3284120 | - | lnc_RNA | retained_intron |
-67001 | enst00000333628 | sg00000137267 | tubb2a-201 | 6 | 3153666 | 3157544 | - | mRNA | protein_coding |
-67019 | enst00000489942 | sg00000137267 | tubb2a-202 | 6 | 3154579 | 3157526 | - | lnc_RNA | processed_transcript |
-71483 | enst00000447644 | sg00000228170 | al031963.1-201 | 6 | 3138394 | 3153062 | - | lnc_RNA | lncrna |
-74531 | enst00000464040 | sg00000137274 | bphl-209 | 6 | 3150014 | 3153046 | + | lnc_RNA | processed_transcript |
-84120 | enst00000423798 | sg00000137274 | bphl-204 | 6 | 3140425 | 3153028 | + | mRNA | protein_coding |
86179 | enst00000607565 | sg00000272320 | al445309.1-201 | 6 | 3311662 | 3313650 | + | lnc_RNA | lncrna |
-97749 | enst00000488487 | sg00000137274 | bphl-211 | 6 | 3126796 | 3152533 | + | lnc_RNA | retained_intron |
98682 | enst00000433689 | sg00000137266 | slc22a23-204 | 6 | 3323342 | 3324165 | - | lnc_RNA | processed_transcript |
98700 | enst00000467144 | sg00000137266 | slc22a23-206 | 6 | 3286984 | 3324183 | - | lnc_RNA | processed_transcript |
-105219 | enst00000380375 | sg00000137274 | bphl-202 | 6 | 3119326 | 3152669 | + | mRNA | protein_coding |
-105737 | enst00000380368 | sg00000137274 | bphl-201 | 6 | 3118808 | 3138083 | + | mRNA | protein_coding |
-105817 | enst00000479273 | sg00000137274 | bphl-210 | 6 | 3118728 | 3124143 | + | lnc_RNA | retained_intron |
-105819 | enst00000490918 | sg00000137274 | bphl-212 | 6 | 3118726 | 3153062 | + | lnc_RNA | retained_intron |
-105834 | enst00000380379 | sg00000137274 | bphl-203 | 6 | 3118711 | 3153578 | + | mRNA | protein_coding |
-105853 | enst00000433912 | sg00000137274 | bphl-207 | 6 | 3118692 | 3152645 | + | mRNA | nonsense_mediated_decay |
-106169 | enst00000430655 | sg00000137274 | bphl-206 | 6 | 3118376 | 3153195 | + | mRNA | nonsense_mediated_decay |
-106169 | enst00000424847 | sg00000137274 | bphl-205 | 6 | 3118376 | 3152669 | + | mRNA | nonsense_mediated_decay |
-106171 | enst00000434640 | sg00000137274 | bphl-208 | 6 | 3118374 | 3152575 | + | mRNA | protein_coding |
-135736 | enst00000410316 | sg00000222248 | rna5sp201-201 | 6 | 3088686 | 3088809 | - | pseudogenic_transcript | rrna_pseudogene |
-147721 | enst00000380409 | sg00000137275 | ripk1-202 | 6 | 3076824 | 3115187 | + | mRNA | protein_coding |
152503 | enst00000496753 | sg00000137266 | slc22a23-211 | 6 | 3289766 | 3377986 | - | lnc_RNA | processed_transcript |
-155651 | enst00000606441 | sg00000272277 | al031963.3-201 | 6 | 3068045 | 3068894 | - | lnc_RNA | lncrna |
-156051 | enst00000259808 | sg00000137275 | ripk1-201 | 6 | 3068494 | 3115187 | + | mRNA | protein_coding |
-160554 | enst00000479389 | sg00000137275 | ripk1-203 | 6 | 3063991 | 3106051 | + | lnc_RNA | processed_transcript |
-168696 | enst00000433761 | sg00000229282 | al031963.2-201 | 6 | 3055849 | 3057357 | + | lnc_RNA | lncrna |
-175710 | enst00000401898 | sg00000217707 | serpinb8p1-201 | 6 | 3048835 | 3049211 | + | pseudogenic_transcript | unprocessed_pseudogene |
-179161 | enst00000428729 | sg00000232654 | fam136bp-201 | 6 | 3045384 | 3045800 | + | pseudogenic_transcript | processed_pseudogene |
-191362 | enst00000612789 | sg00000274855 | al133351.3-201 | 6 | 3033183 | 3033288 | + | pseudogenic_transcript | processed_pseudogene |
-200773 | enst00000604204 | sg00000271361 | htatsf1p2-201 | 6 | 3023142 | 3023772 | - | pseudogenic_transcript | processed_pseudogene |
213935 | enst00000467177 | sg00000137266 | slc22a23-207 | 6 | 3283874 | 3439418 | - | mRNA | protein_coding |
219486 | enst00000497691 | sg00000137266 | slc22a23-212 | 6 | 3271774 | 3444969 | - | mRNA | nonsense_mediated_decay |
219501 | enst00000490273 | sg00000137266 | slc22a23-210 | 6 | 3272830 | 3444984 | - | mRNA | protein_coding |
219530 | enst00000380302 | sg00000137266 | slc22a23-202 | 6 | 3271774 | 3445013 | - | mRNA | protein_coding |
-220378 | enst00000606474 | sg00000124588 | nqo2-209 | 6 | 3004167 | 3010189 | + | mRNA | protein_coding |
-224387 | enst00000380430 | sg00000124588 | nqo2-202 | 6 | 3000158 | 3019762 | + | mRNA | protein_coding |
-224543 | enst00000380454 | sg00000124588 | nqo2-204 | 6 | 3000002 | 3019755 | + | mRNA | protein_coding |
-224556 | enst00000380441 | sg00000124588 | nqo2-203 | 6 | 2999989 | 3019755 | + | mRNA | protein_coding |
-224571 | enst00000338130 | sg00000124588 | nqo2-201 | 6 | 2999974 | 3019762 | + | mRNA | protein_coding |
-224651 | enst00000380455 | sg00000124588 | nqo2-205 | 6 | 2999894 | 3028869 | + | mRNA | protein_coding |
-224669 | enst00000397717 | sg00000124588 | nqo2-207 | 6 | 2999876 | 3015643 | + | mRNA | protein_coding |
-224941 | enst00000660868 | sg00000224846 | nqo2-as1-204 | 6 | 2989336 | 2999604 | - | lnc_RNA | lncrna |
-225368 | enst00000665347 | sg00000224846 | nqo2-as1-205 | 6 | 2989726 | 2999177 | - | lnc_RNA | lncrna |
-225411 | enst00000429319 | sg00000224846 | nqo2-as1-201 | 6 | 2989726 | 2999134 | - | lnc_RNA | lncrna |
-225739 | enst00000658240 | sg00000224846 | nqo2-as1-203 | 6 | 2989335 | 2998806 | - | lnc_RNA | lncrna |
-225802 | enst00000456189 | sg00000224846 | nqo2-as1-202 | 6 | 2989722 | 2998743 | - | lnc_RNA | lncrna |
230560 | enst00000485307 | sg00000137266 | slc22a23-209 | 6 | 3283465 | 3456043 | - | mRNA | protein_coding |
231076 | enst00000380298 | sg00000137266 | slc22a23-201 | 6 | 3323342 | 3456559 | - | mRNA | protein_coding |
231076 | enst00000406686 | sg00000137266 | slc22a23-203 | 6 | 3269458 | 3456559 | - | mRNA | protein_coding |
231539 | enst00000436008 | sg00000137266 | slc22a23-205 | 6 | 3268962 | 3457022 | - | mRNA | protein_coding |
-235887 | enst00000454015 | sg00000244041 | linc01011-203 | 6 | 2988658 | 2990252 | + | lnc_RNA | lncrna |
-235897 | enst00000605901 | sg00000244041 | linc01011-204 | 6 | 2988648 | 2991173 | + | lnc_RNA | lncrna |
-235899 | enst00000380472 | sg00000124588 | nqo2-206 | 6 | 2988646 | 3015643 | + | mRNA | protein_coding |
-236558 | enst00000426637 | sg00000124588 | nqo2-208 | 6 | 2987987 | 3012561 | + | mRNA | protein_coding |
-236578 | enst00000450238 | sg00000244041 | linc01011-202 | 6 | 2987967 | 2990348 | + | lnc_RNA | lncrna |
-236578 | enst00000445000 | sg00000244041 | linc01011-201 | 6 | 2987967 | 2991173 | + | lnc_RNA | lncrna |
-252380 | enst00000616722 | sg00000124570 | serpinb6-207 | 6 | 2948171 | 2972165 | - | mRNA | protein_coding |
-252768 | enst00000646775 | sg00000124570 | serpinb6-223 | 6 | 2954703 | 2971777 | - | mRNA | protein_coding |
-252884 | enst00000380520 | sg00000124570 | serpinb6-201 | 6 | 2948196 | 2971661 | - | mRNA | protein_coding |
-252901 | enst00000644388 | sg00000124570 | serpinb6-213 | 6 | 2948193 | 2971644 | - | mRNA | protein_coding |
-252940 | enst00000643098 | sg00000124570 | serpinb6-209 | 6 | 2948159 | 2971605 | - | mRNA | protein_coding |
-252960 | enst00000380546 | sg00000124570 | serpinb6-205 | 6 | 2948159 | 2971585 | - | mRNA | protein_coding |
-252978 | enst00000380539 | sg00000124570 | serpinb6-204 | 6 | 2948159 | 2971567 | - | mRNA | protein_coding |
-253191 | enst00000645421 | sg00000124570 | serpinb6-219 | 6 | 2955605 | 2971354 | - | mRNA | protein_coding |
-253214 | enst00000643227 | sg00000124570 | serpinb6-210 | 6 | 2955605 | 2971331 | - | mRNA | protein_coding |
-253261 | enst00000646688 | sg00000124570 | serpinb6-221 | 6 | 2955652 | 2971284 | - | mRNA | protein_coding |
-253269 | enst00000642543 | sg00000124570 | serpinb6-208 | 6 | 2948175 | 2971276 | - | mRNA | protein_coding |
-253275 | enst00000644693 | sg00000124570 | serpinb6-214 | 6 | 2948245 | 2971270 | - | mRNA | nonsense_mediated_decay |
-253307 | enst00000644777 | sg00000124570 | serpinb6-216 | 6 | 2955655 | 2971238 | - | mRNA | protein_coding |
-253339 | enst00000380529 | sg00000124570 | serpinb6-203 | 6 | 2948159 | 2971206 | - | mRNA | protein_coding |
-253497 | enst00000612421 | sg00000124570 | serpinb6-206 | 6 | 2948164 | 2971048 | - | mRNA | protein_coding |
-253800 | enst00000649845 | sg00000124570 | serpinb6-225 | 6 | 2948162 | 2970745 | - | mRNA | nonsense_mediated_decay |
-253802 | enst00000644178 | sg00000124570 | serpinb6-212 | 6 | 2948163 | 2970743 | - | mRNA | protein_coding |
-253831 | enst00000645580 | sg00000124570 | serpinb6-220 | 6 | 2948217 | 2970714 | - | mRNA | protein_coding |
-260540 | enst00000644828 | sg00000124570 | serpinb6-217 | 6 | 2948966 | 2964005 | - | mRNA | protein_coding |
-262406 | enst00000644875 | sg00000124570 | serpinb6-218 | 6 | 2959298 | 2962139 | - | mRNA | protein_coding |
-262437 | enst00000380524 | sg00000124570 | serpinb6-202 | 6 | 2948159 | 2962108 | - | mRNA | protein_coding |
-263218 | enst00000643314 | sg00000124570 | serpinb6-211 | 6 | 2948159 | 2961327 | - | lnc_RNA | retained_intron |
-266376 | enst00000647157 | sg00000124570 | serpinb6-224 | 6 | 2948164 | 2958169 | - | lnc_RNA | retained_intron |
-266957 | enst00000646722 | sg00000124570 | serpinb6-222 | 6 | 2948160 | 2957588 | - | lnc_RNA | retained_intron |
-268663 | enst00000644697 | sg00000124570 | serpinb6-215 | 6 | 2948170 | 2955882 | - | lnc_RNA | retained_intron |
-307651 | enst00000437718 | sg00000228365 | al133351.1-201 | 6 | 2916894 | 2917733 | + | lnc_RNA | lncrna |
-312432 | enst00000454998 | sg00000232999 | al133351.2-201 | 6 | 2910613 | 2912113 | - | pseudogenic_transcript | unprocessed_pseudogene |
-321236 | enst00000380698 | sg00000170542 | serpinb9-201 | 6 | 2887270 | 2903309 | - | mRNA | protein_coding |
-343138 | enst00000668503 | sg00000230438 | serpinb9p1-207 | 6 | 2854245 | 2881407 | - | lnc_RNA | lncrna |
-343252 | enst00000665261 | sg00000230438 | serpinb9p1-205 | 6 | 2854245 | 2881293 | - | lnc_RNA | lncrna |
-343259 | enst00000545177 | sg00000230438 | serpinb9p1-202 | 6 | 2854658 | 2881286 | - | lnc_RNA | lncrna |
-343259 | enst00000667461 | sg00000230438 | serpinb9p1-206 | 6 | 2854575 | 2881286 | - | lnc_RNA | lncrna |
-347213 | enst00000670827 | sg00000230438 | serpinb9p1-209 | 6 | 2854660 | 2877332 | - | lnc_RNA | lncrna |
-347938 | enst00000670540 | sg00000230438 | serpinb9p1-208 | 6 | 2854220 | 2876607 | - | lnc_RNA | lncrna |
-347992 | enst00000654948 | sg00000230438 | serpinb9p1-203 | 6 | 2854202 | 2876553 | - | lnc_RNA | lncrna |
-348028 | enst00000661223 | sg00000230438 | serpinb9p1-204 | 6 | 2851230 | 2876517 | - | lnc_RNA | lncrna |
-348028 | enst00000420981 | sg00000230438 | serpinb9p1-201 | 6 | 2854659 | 2876517 | - | lnc_RNA | lncrna |
-370438 | enst00000583158 | sg00000266750 | mir4645-201 | 6 | 2854031 | 2854107 | - | miRNA | mirna |
373643 | enst00000660471 | sg00000228793 | al033523.1-214 | 6 | 3593578 | 3599126 | - | lnc_RNA | lncrna |
-382586 | enst00000490094 | sg00000021355 | serpinb1-205 | 6 | 2835856 | 2841959 | - | lnc_RNA | processed_transcript |
-382682 | enst00000380739 | sg00000021355 | serpinb1-201 | 6 | 2832332 | 2841863 | - | mRNA | protein_coding |
-382683 | enst00000460260 | sg00000021355 | serpinb1-202 | 6 | 2838549 | 2841862 | - | lnc_RNA | processed_transcript |
-382697 | enst00000476896 | sg00000021355 | serpinb1-204 | 6 | 2836108 | 2841848 | - | lnc_RNA | processed_transcript |
-386546 | enst00000468511 | sg00000021355 | serpinb1-203 | 6 | 2833512 | 2837999 | - | lnc_RNA | processed_transcript |
399264 | enst00000443445 | sg00000228793 | al033523.1-201 | 6 | 3593848 | 3624747 | - | lnc_RNA | lncrna |
428107 | enst00000652961 | sg00000228793 | al033523.1-228 | 6 | 3593657 | 3653590 | - | lnc_RNA | lncrna |
428242 | enst00000667419 | sg00000228793 | al033523.1-223 | 6 | 3593657 | 3653725 | - | lnc_RNA | lncrna |
-455772 | enst00000380764 | sg00000124535 | wrnip1-201 | 6 | 2768773 | 2785745 | + | mRNA | protein_coding |
-458493 | enst00000380769 | sg00000124535 | wrnip1-202 | 6 | 2766052 | 2786952 | + | mRNA | protein_coding |
-459113 | enst00000618555 | sg00000124535 | wrnip1-205 | 6 | 2765432 | 2785744 | + | mRNA | protein_coding |
-459131 | enst00000380771 | sg00000124535 | wrnip1-203 | 6 | 2765414 | 2785745 | + | mRNA | protein_coding |
-459152 | enst00000380773 | sg00000124535 | wrnip1-204 | 6 | 2765393 | 2786952 | + | mRNA | protein_coding |
468592 | enst00000605153 | sg00000270477 | al033523.2-201 | 6 | 3693923 | 3694075 | - | pseudogenic_transcript | processed_pseudogene |
-473623 | enst00000274643 | sg00000145949 | mylk4-201 | 6 | 2663637 | 2750922 | - | mRNA | protein_coding |
-480397 | enst00000647417 | sg00000145949 | mylk4-202 | 6 | 2663629 | 2744148 | - | mRNA | protein_coding |
493986 | enst00000661070 | sg00000228793 | al033523.1-215 | 6 | 3593587 | 3719469 | - | lnc_RNA | lncrna |
494126 | enst00000661196 | sg00000228793 | al033523.1-209 | 6 | 3588702 | 3719609 | - | lnc_RNA | lncrna |
494160 | enst00000655990 | sg00000228793 | al033523.1-233 | 6 | 3631783 | 3719643 | - | lnc_RNA | lncrna |
494196 | enst00000663773 | sg00000228793 | al033523.1-226 | 6 | 3593657 | 3719679 | - | lnc_RNA | lncrna |
494337 | enst00000653626 | sg00000228793 | al033523.1-235 | 6 | 3662795 | 3719820 | - | lnc_RNA | lncrna |
494337 | enst00000658658 | sg00000228793 | al033523.1-205 | 6 | 3585193 | 3719820 | - | lnc_RNA | lncrna |
494504 | enst00000670704 | sg00000228793 | al033523.1-217 | 6 | 3593587 | 3719987 | - | lnc_RNA | lncrna |
494557 | enst00000668872 | sg00000228793 | al033523.1-225 | 6 | 3593657 | 3720040 | - | lnc_RNA | lncrna |
494565 | enst00000656112 | sg00000228793 | al033523.1-232 | 6 | 3594348 | 3720048 | - | lnc_RNA | lncrna |
494586 | enst00000661957 | sg00000228793 | al033523.1-221 | 6 | 3593640 | 3720069 | - | lnc_RNA | lncrna |
494590 | enst00000668915 | sg00000228793 | al033523.1-206 | 6 | 3585241 | 3720073 | - | lnc_RNA | lncrna |
494594 | enst00000667255 | sg00000228793 | al033523.1-216 | 6 | 3593587 | 3720077 | - | lnc_RNA | lncrna |
494594 | enst00000659072 | sg00000228793 | al033523.1-234 | 6 | 3652413 | 3720077 | - | lnc_RNA | lncrna |
494594 | enst00000668020 | sg00000228793 | al033523.1-208 | 6 | 3588665 | 3720077 | - | lnc_RNA | lncrna |
494594 | enst00000669421 | sg00000228793 | al033523.1-210 | 6 | 3588756 | 3720077 | - | lnc_RNA | lncrna |
494594 | enst00000669829 | sg00000228793 | al033523.1-231 | 6 | 3593776 | 3720077 | - | lnc_RNA | lncrna |
494594 | enst00000662672 | sg00000228793 | al033523.1-230 | 6 | 3593669 | 3720077 | - | lnc_RNA | lncrna |
494594 | enst00000665671 | sg00000228793 | al033523.1-227 | 6 | 3593657 | 3720077 | - | lnc_RNA | lncrna |
494594 | enst00000660793 | sg00000228793 | al033523.1-229 | 6 | 3593657 | 3720077 | - | lnc_RNA | lncrna |
494594 | enst00000659450 | sg00000228793 | al033523.1-213 | 6 | 3593553 | 3720077 | - | lnc_RNA | lncrna |
494594 | enst00000657929 | sg00000228793 | al033523.1-222 | 6 | 3593657 | 3720077 | - | lnc_RNA | lncrna |
494594 | enst00000653557 | sg00000228793 | al033523.1-211 | 6 | 3593497 | 3720077 | - | lnc_RNA | lncrna |
494594 | enst00000660734 | sg00000228793 | al033523.1-202 | 6 | 3593505 | 3720077 | - | lnc_RNA | lncrna |
494594 | enst00000655328 | sg00000228793 | al033523.1-212 | 6 | 3593513 | 3720077 | - | lnc_RNA | lncrna |
494594 | enst00000665760 | sg00000228793 | al033523.1-204 | 6 | 3585101 | 3720077 | - | lnc_RNA | lncrna |
494594 | enst00000667691 | sg00000228793 | al033523.1-220 | 6 | 3593633 | 3720077 | - | lnc_RNA | lncrna |
494594 | enst00000669021 | sg00000228793 | al033523.1-219 | 6 | 3593627 | 3720077 | - | lnc_RNA | lncrna |
494594 | enst00000661016 | sg00000228793 | al033523.1-218 | 6 | 3593627 | 3720077 | - | lnc_RNA | lncrna |
494594 | enst00000656179 | sg00000228793 | al033523.1-224 | 6 | 3593657 | 3720077 | - | lnc_RNA | lncrna |
494594 | enst00000662974 | sg00000228793 | al033523.1-207 | 6 | 3588605 | 3720077 | - | lnc_RNA | lncrna |
494598 | enst00000666680 | sg00000228793 | al033523.1-203 | 6 | 3593490 | 3720081 | - | lnc_RNA | lncrna |
Source file: /hps/research1/birney/users/adrien/analyses/cancer_DNA_promethion/run_1_2_3_4/DNA_pipeline_2/results/methylation/pycometh_meth_comp_CGI_3/out.tsv.gz
MD5 hash: 9aa0e3f69cb4e12345c3758eb68a5efc