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CpG interval report generated on 20/05/20 with pycoMeth 0.4.6
Interval details
| pvalue rank | chromosome | start | end | length | number of samples | number of CpGs | pvalue | adjusted pvalue |
|---|---|---|---|---|---|---|---|---|
| #109 | 3 | 50275125 | 50277017 | 1892 | 3 | 63 | 3.26348e-17 | 2.97755e-15 |
Methylation log-likelihood ratio by CpG position
Distribution of CpG methylation log-likelihood ratio by sample
Closest transcripts TSS
| distance to tss | transcript id | gene id | transcript name | chromosome | start | end | strand | feature type | transcript biotype |
|---|---|---|---|---|---|---|---|---|---|
| -491 | enst00000416295 | sg00000012171 | sema3b-201 | 3 | 50274634 | 50276444 | + | lnc_RNA | retained_intron |
| -1779 | enst00000419007 | sg00000012171 | sema3b-203 | 3 | 50273346 | 50277161 | + | lnc_RNA | retained_intron |
| -1889 | enst00000612981 | sg00000283848 | mir6872-201 | 3 | 50273236 | 50273297 | + | miRNA | mirna |
| -1965 | enst00000418576 | sg00000012171 | sema3b-202 | 3 | 50273160 | 50276876 | + | mRNA | protein_coding |
| -1968 | enst00000456210 | sg00000012171 | sema3b-208 | 3 | 50273157 | 50277546 | + | lnc_RNA | processed_transcript |
| -1973 | enst00000434030 | sg00000012171 | sema3b-205 | 3 | 50273152 | 50274340 | + | lnc_RNA | retained_intron |
| -1995 | enst00000439487 | sg00000012171 | sema3b-206 | 3 | 50273130 | 50274530 | + | lnc_RNA | retained_intron |
| -2006 | enst00000456560 | sg00000012171 | sema3b-209 | 3 | 50273119 | 50277165 | + | mRNA | protein_coding |
| 2070 | enst00000316436 | sg00000179564 | lsmem2-201 | 3 | 50279087 | 50288114 | + | mRNA | protein_coding |
| -4564 | enst00000441915 | sg00000012171 | sema3b-207 | 3 | 50270561 | 50277170 | + | lnc_RNA | retained_intron |
| -5911 | enst00000611067 | sg00000012171 | sema3b-210 | 3 | 50269214 | 50276706 | + | mRNA | protein_coding |
| -5956 | enst00000433753 | sg00000012171 | sema3b-204 | 3 | 50269169 | 50277142 | + | mRNA | protein_coding |
| -5960 | enst00000612509 | sg00000012171 | sema3b-211 | 3 | 50269165 | 50273680 | + | lnc_RNA | retained_intron |
| -5978 | enst00000616701 | sg00000012171 | sema3b-212 | 3 | 50269147 | 50277546 | + | mRNA | protein_coding |
| -6251 | enst00000619119 | sg00000012171 | sema3b-214 | 3 | 50268874 | 50277139 | + | lnc_RNA | retained_intron |
| -7517 | enst00000618865 | sg00000012171 | sema3b-213 | 3 | 50267608 | 50277139 | + | mRNA | protein_coding |
| -7567 | enst00000621029 | sg00000012171 | sema3b-215 | 3 | 50267558 | 50271458 | + | mRNA | protein_coding |
| -7754 | enst00000421735 | sg00000232352 | sema3b-as1-201 | 3 | 50266641 | 50267371 | - | lnc_RNA | lncrna |
| 11622 | enst00000426499 | sg00000214706 | ifrd2-203 | 3 | 50287743 | 50288639 | - | mRNA | protein_coding |
| 12043 | enst00000486322 | sg00000214706 | ifrd2-213 | 3 | 50288371 | 50289060 | - | lnc_RNA | retained_intron |
| 12209 | enst00000492387 | sg00000214706 | ifrd2-215 | 3 | 50288512 | 50289226 | - | lnc_RNA | retained_intron |
| 12246 | enst00000469855 | sg00000214706 | ifrd2-209 | 3 | 50288663 | 50289263 | - | lnc_RNA | retained_intron |
| 12584 | enst00000464258 | sg00000214706 | ifrd2-207 | 3 | 50288131 | 50289601 | - | lnc_RNA | retained_intron |
| 13053 | enst00000483071 | sg00000214706 | ifrd2-211 | 3 | 50289208 | 50290070 | - | lnc_RNA | retained_intron |
| 13234 | enst00000438296 | sg00000214706 | ifrd2-205 | 3 | 50288430 | 50290251 | - | mRNA | nonsense_mediated_decay |
| -13892 | enst00000426302 | sg00000230454 | u73166.1-203 | 3 | 50261233 | 50263312 | + | lnc_RNA | lncrna |
| -14711 | enst00000453717 | sg00000230454 | u73166.1-202 | 3 | 50260414 | 50261407 | + | lnc_RNA | lncrna |
| -14822 | enst00000439898 | sg00000230454 | u73166.1-201 | 3 | 50260303 | 50263358 | + | lnc_RNA | lncrna |
| 15032 | enst00000484043 | sg00000214706 | ifrd2-212 | 3 | 50290006 | 50292049 | - | lnc_RNA | processed_transcript |
| 15039 | enst00000468737 | sg00000214706 | ifrd2-208 | 3 | 50290181 | 50292056 | - | lnc_RNA | processed_transcript |
| 15372 | enst00000414734 | sg00000214706 | ifrd2-201 | 3 | 50288799 | 50292389 | - | mRNA | nonsense_mediated_decay |
| 15403 | enst00000489569 | sg00000214706 | ifrd2-214 | 3 | 50289248 | 50292420 | - | lnc_RNA | retained_intron |
| 15407 | enst00000474556 | sg00000214706 | ifrd2-210 | 3 | 50287941 | 50292424 | - | lnc_RNA | retained_intron |
| 15419 | enst00000462001 | sg00000214706 | ifrd2-206 | 3 | 50290009 | 50292436 | - | lnc_RNA | retained_intron |
| 15578 | enst00000417626 | sg00000214706 | ifrd2-202 | 3 | 50287732 | 50292595 | - | mRNA | protein_coding |
| 15901 | enst00000436390 | sg00000214706 | ifrd2-204 | 3 | 50287743 | 50292918 | - | mRNA | protein_coding |
| 18756 | enst00000435141 | sg00000186792 | hyal3-204 | 3 | 50295124 | 50295773 | - | mRNA | protein_coding |
| -18842 | enst00000492383 | sg00000114353 | gnai2-212 | 3 | 50256283 | 50258166 | + | lnc_RNA | retained_intron |
| 21814 | enst00000621157 | sg00000186792 | hyal3-207 | 3 | 50292832 | 50298831 | - | mRNA | protein_coding |
| 21842 | enst00000359051 | sg00000186792 | hyal3-202 | 3 | 50292831 | 50298859 | - | mRNA | protein_coding |
| 21842 | enst00000417393 | sg00000243477 | naa80-202 | 3 | 50296404 | 50298859 | - | mRNA | protein_coding |
| 21872 | enst00000452674 | sg00000243477 | naa80-207 | 3 | 50297436 | 50298889 | - | mRNA | protein_coding |
| 21872 | enst00000442620 | sg00000243477 | naa80-203 | 3 | 50297293 | 50298889 | - | mRNA | protein_coding |
| -21971 | enst00000468422 | sg00000114353 | gnai2-208 | 3 | 50253154 | 50256691 | + | lnc_RNA | retained_intron |
| 22100 | enst00000450489 | sg00000243477 | naa80-206 | 3 | 50297205 | 50299117 | - | mRNA | protein_coding |
| 22215 | enst00000513170 | sg00000186792 | hyal3-206 | 3 | 50293045 | 50299232 | - | mRNA | protein_coding |
| 22215 | enst00000450982 | sg00000186792 | hyal3-205 | 3 | 50293045 | 50299232 | - | mRNA | protein_coding |
| 22383 | enst00000443842 | sg00000243477 | naa80-205 | 3 | 50296452 | 50299400 | - | mRNA | protein_coding |
| 22384 | enst00000415204 | sg00000186792 | hyal3-203 | 3 | 50292981 | 50299401 | - | mRNA | protein_coding |
| 22388 | enst00000336307 | sg00000186792 | hyal3-201 | 3 | 50292832 | 50299405 | - | mRNA | protein_coding |
| 22399 | enst00000354862 | sg00000243477 | naa80-201 | 3 | 50296402 | 50299416 | - | mRNA | protein_coding |
| 22404 | enst00000443094 | sg00000243477 | naa80-204 | 3 | 50296418 | 50299421 | - | mRNA | protein_coding |
| -23716 | enst00000490122 | sg00000114353 | gnai2-210 | 3 | 50251409 | 50258893 | + | lnc_RNA | retained_intron |
| 26555 | enst00000266031 | sg00000114378 | hyal1-201 | 3 | 50299890 | 50303572 | - | mRNA | protein_coding |
| 26556 | enst00000395143 | sg00000114378 | hyal1-203 | 3 | 50300311 | 50303573 | - | mRNA | protein_coding |
| 26556 | enst00000447605 | sg00000114378 | hyal1-206 | 3 | 50300482 | 50303573 | - | mRNA | protein_coding |
| 26556 | enst00000457214 | sg00000114378 | hyal1-208 | 3 | 50300482 | 50303573 | - | mRNA | protein_coding |
| 26557 | enst00000395144 | sg00000114378 | hyal1-204 | 3 | 50299893 | 50303574 | - | mRNA | protein_coding |
| 26557 | enst00000418723 | sg00000114378 | hyal1-205 | 3 | 50302647 | 50303574 | - | mRNA | protein_coding |
| 27070 | enst00000618175 | sg00000114378 | hyal1-209 | 3 | 50299890 | 50304087 | - | mRNA | protein_coding |
| 27099 | enst00000452672 | sg00000114378 | hyal1-207 | 3 | 50302749 | 50304116 | - | mRNA | protein_coding |
| -28231 | enst00000451956 | sg00000114353 | gnai2-207 | 3 | 50246894 | 50258697 | + | mRNA | protein_coding |
| 35364 | enst00000320295 | sg00000114378 | hyal1-202 | 3 | 50299894 | 50312381 | - | mRNA | protein_coding |
| -35507 | enst00000395152 | sg00000213600 | u73169.1-201 | 3 | 50239618 | 50239984 | + | lnc_RNA | lncrna |
| -37013 | enst00000440628 | sg00000114353 | gnai2-204 | 3 | 50238112 | 50258751 | + | mRNA | protein_coding |
| -38921 | enst00000313601 | sg00000114353 | gnai2-202 | 3 | 50236204 | 50259362 | + | mRNA | protein_coding |
| -38921 | enst00000441156 | sg00000114353 | gnai2-205 | 3 | 50236204 | 50259354 | + | mRNA | nonsense_mediated_decay |
| 43931 | enst00000426286 | sg00000068001 | hyal2-205 | 3 | 50320246 | 50320948 | - | mRNA | protein_coding |
| 43970 | enst00000424190 | sg00000068001 | hyal2-204 | 3 | 50320137 | 50320987 | - | mRNA | protein_coding |
| 44132 | enst00000415028 | sg00000068001 | hyal2-203 | 3 | 50320347 | 50321149 | - | mRNA | protein_coding |
| 44200 | enst00000458018 | sg00000068001 | hyal2-209 | 3 | 50320127 | 50321217 | - | mRNA | protein_coding |
| -44315 | enst00000480090 | sg00000114353 | gnai2-209 | 3 | 50230810 | 50235290 | + | lnc_RNA | processed_transcript |
| -44349 | enst00000266027 | sg00000114353 | gnai2-201 | 3 | 50230776 | 50259339 | + | mRNA | protein_coding |
| 44696 | enst00000395139 | sg00000068001 | hyal2-202 | 3 | 50317809 | 50321713 | - | mRNA | protein_coding |
| 45724 | enst00000428028 | sg00000068001 | hyal2-206 | 3 | 50320260 | 50322741 | - | mRNA | protein_coding |
| 45724 | enst00000481597 | sg00000068001 | hyal2-210 | 3 | 50318589 | 50322741 | - | lnc_RNA | retained_intron |
| 45728 | enst00000357750 | sg00000068001 | hyal2-201 | 3 | 50317808 | 50322745 | - | mRNA | protein_coding |
| 45760 | enst00000442581 | sg00000068001 | hyal2-207 | 3 | 50317812 | 50322777 | - | mRNA | protein_coding |
| 45765 | enst00000447092 | sg00000068001 | hyal2-208 | 3 | 50317790 | 50322782 | - | mRNA | protein_coding |
| -46060 | enst00000491100 | sg00000114353 | gnai2-211 | 3 | 50229065 | 50259345 | + | lnc_RNA | processed_transcript |
| -47689 | enst00000611784 | sg00000275334 | mir5787-201 | 3 | 50227436 | 50227490 | + | miRNA | mirna |
| -48388 | enst00000446079 | sg00000114353 | gnai2-206 | 3 | 50226737 | 50258898 | + | mRNA | nonsense_mediated_decay |
| -48833 | enst00000422163 | sg00000114353 | gnai2-203 | 3 | 50226292 | 50258898 | + | mRNA | protein_coding |
| 51140 | enst00000462137 | sg00000114383 | tusc2-205 | 3 | 50320027 | 50328157 | - | lnc_RNA | processed_transcript |
| 51178 | enst00000417867 | sg00000114383 | tusc2-202 | 3 | 50326356 | 50328195 | - | mRNA | nonsense_mediated_decay |
| 51189 | enst00000454201 | sg00000114383 | tusc2-204 | 3 | 50326008 | 50328206 | - | mRNA | nonsense_mediated_decay |
| 51206 | enst00000232496 | sg00000114383 | tusc2-201 | 3 | 50324909 | 50328223 | - | mRNA | protein_coding |
| 51221 | enst00000463304 | sg00000114383 | tusc2-206 | 3 | 50326090 | 50328238 | - | lnc_RNA | processed_transcript |
| 51234 | enst00000421918 | sg00000114383 | tusc2-203 | 3 | 50326008 | 50328251 | - | mRNA | nonsense_mediated_decay |
| -57208 | enst00000417121 | sg00000188338 | slc38a3-201 | 3 | 50217917 | 50218680 | + | lnc_RNA | retained_intron |
| -57389 | enst00000417851 | sg00000188338 | slc38a3-202 | 3 | 50217736 | 50218668 | + | lnc_RNA | retained_intron |
| -59858 | enst00000439524 | sg00000188338 | slc38a3-203 | 3 | 50215267 | 50217293 | + | lnc_RNA | retained_intron |
| 60447 | enst00000327761 | sg00000068028 | rassf1-201 | 3 | 50329782 | 50337464 | - | mRNA | protein_coding |
| 60494 | enst00000629828 | sg00000281358 | rassf1-as1-201 | 3 | 50337511 | 50338300 | + | lnc_RNA | lncrna |
| 61216 | enst00000395126 | sg00000068028 | rassf1-205 | 3 | 50329788 | 50338233 | - | mRNA | protein_coding |
| 61271 | enst00000494145 | sg00000068028 | rassf1-209 | 3 | 50336800 | 50338288 | - | lnc_RNA | retained_intron |
| 63813 | enst00000488024 | sg00000068028 | rassf1-208 | 3 | 50336570 | 50340830 | - | lnc_RNA | processed_transcript |
| 63824 | enst00000357043 | sg00000068028 | rassf1-202 | 3 | 50329788 | 50340841 | - | mRNA | protein_coding |
| 63824 | enst00000395117 | sg00000068028 | rassf1-204 | 3 | 50329788 | 50340841 | - | mRNA | nonsense_mediated_decay |
| 63895 | enst00000359365 | sg00000068028 | rassf1-203 | 3 | 50329788 | 50340912 | - | mRNA | protein_coding |
| 63895 | enst00000482447 | sg00000068028 | rassf1-207 | 3 | 50329788 | 50340912 | - | mRNA | nonsense_mediated_decay |
| 63919 | enst00000616212 | sg00000068028 | rassf1-210 | 3 | 50329786 | 50340936 | - | mRNA | protein_coding |
| 63963 | enst00000478619 | sg00000068028 | rassf1-206 | 3 | 50336377 | 50340980 | - | lnc_RNA | retained_intron |
| 64089 | enst00000440013 | sg00000235058 | zmynd10-as1-201 | 3 | 50341106 | 50345697 | + | lnc_RNA | lncrna |
| 65431 | enst00000490675 | sg00000004838 | zmynd10-209 | 3 | 50341110 | 50342448 | - | lnc_RNA | processed_transcript |
| 66151 | enst00000475688 | sg00000004838 | zmynd10-207 | 3 | 50341115 | 50343168 | - | lnc_RNA | retained_intron |
| 67019 | enst00000478269 | sg00000004838 | zmynd10-208 | 3 | 50343169 | 50344036 | - | lnc_RNA | retained_intron |
| -67442 | enst00000621456 | sg00000188338 | slc38a3-208 | 3 | 50207683 | 50214768 | + | mRNA | protein_coding |
| 68655 | enst00000443080 | sg00000004838 | zmynd10-205 | 3 | 50342522 | 50345672 | - | mRNA | nonsense_mediated_decay |
| 68664 | enst00000468182 | sg00000004838 | zmynd10-206 | 3 | 50344839 | 50345681 | - | lnc_RNA | processed_transcript |
| 68704 | enst00000442887 | sg00000004838 | zmynd10-204 | 3 | 50342037 | 50345721 | - | mRNA | protein_coding |
| 68704 | enst00000431869 | sg00000004838 | zmynd10-203 | 3 | 50343401 | 50345721 | - | mRNA | nonsense_mediated_decay |
| 68715 | enst00000231749 | sg00000004838 | zmynd10-201 | 3 | 50341112 | 50345732 | - | mRNA | protein_coding |
| 68715 | enst00000360165 | sg00000004838 | zmynd10-202 | 3 | 50341114 | 50345732 | - | mRNA | protein_coding |
| -69839 | enst00000445096 | sg00000188338 | slc38a3-204 | 3 | 50205286 | 50218672 | + | mRNA | protein_coding |
| -69846 | enst00000620404 | sg00000188338 | slc38a3-207 | 3 | 50205279 | 50214914 | + | lnc_RNA | retained_intron |
| -69854 | enst00000614032 | sg00000188338 | slc38a3-206 | 3 | 50205271 | 50221486 | + | mRNA | protein_coding |
| -69857 | enst00000621714 | sg00000188338 | slc38a3-209 | 3 | 50205268 | 50217995 | + | mRNA | nonsense_mediated_decay |
| -69879 | enst00000610458 | sg00000188338 | slc38a3-205 | 3 | 50205246 | 50214757 | + | mRNA | protein_coding |
| 71769 | enst00000493465 | sg00000114388 | nprl2-216 | 3 | 50347494 | 50348786 | - | lnc_RNA | processed_transcript |
| 72112 | enst00000492805 | sg00000114388 | nprl2-215 | 3 | 50348253 | 50349129 | - | lnc_RNA | retained_intron |
| 73348 | enst00000480296 | sg00000114388 | nprl2-213 | 3 | 50347491 | 50350365 | - | lnc_RNA | retained_intron |
| 73678 | enst00000425346 | sg00000114395 | cyb561d2-205 | 3 | 50350695 | 50354079 | + | mRNA | protein_coding |
| 73687 | enst00000429366 | sg00000114388 | nprl2-203 | 3 | 50347490 | 50350704 | - | mRNA | nonsense_mediated_decay |
| 73728 | enst00000433999 | sg00000114388 | nprl2-205 | 3 | 50348161 | 50350745 | - | mRNA | nonsense_mediated_decay |
| 73737 | enst00000451194 | sg00000114388 | nprl2-207 | 3 | 50347491 | 50350754 | - | mRNA | nonsense_mediated_decay |
| 73749 | enst00000479512 | sg00000114388 | nprl2-212 | 3 | 50347499 | 50350766 | - | lnc_RNA | retained_intron |
| 73750 | enst00000487632 | sg00000114388 | nprl2-214 | 3 | 50347488 | 50350767 | - | lnc_RNA | retained_intron |
| 73758 | enst00000232501 | sg00000114388 | nprl2-201 | 3 | 50347330 | 50350775 | - | mRNA | protein_coding |
| 73758 | enst00000469839 | sg00000114388 | nprl2-210 | 3 | 50349156 | 50350775 | - | lnc_RNA | retained_intron |
| 73762 | enst00000476064 | sg00000114388 | nprl2-211 | 3 | 50347330 | 50350779 | - | lnc_RNA | retained_intron |
| 73764 | enst00000433381 | sg00000114388 | nprl2-204 | 3 | 50347518 | 50350781 | - | mRNA | nonsense_mediated_decay |
| 73764 | enst00000448302 | sg00000114388 | nprl2-206 | 3 | 50348316 | 50350781 | - | mRNA | nonsense_mediated_decay |
| 73764 | enst00000418825 | sg00000114388 | nprl2-202 | 3 | 50348146 | 50350781 | - | mRNA | nonsense_mediated_decay |
| 73765 | enst00000467294 | sg00000114388 | nprl2-209 | 3 | 50347488 | 50350782 | - | lnc_RNA | retained_intron |
| 73765 | enst00000461020 | sg00000114388 | nprl2-208 | 3 | 50347488 | 50350782 | - | lnc_RNA | retained_intron |
| 73769 | enst00000671487 | sg00000114388 | nprl2-220 | 3 | 50347516 | 50350786 | - | lnc_RNA | retained_intron |
| 73792 | enst00000667631 | sg00000114388 | nprl2-219 | 3 | 50347510 | 50350809 | - | lnc_RNA | retained_intron |
| 73804 | enst00000493907 | sg00000114388 | nprl2-217 | 3 | 50349435 | 50350821 | - | lnc_RNA | retained_intron |
| 73809 | enst00000667046 | sg00000114388 | nprl2-218 | 3 | 50347522 | 50350826 | - | mRNA | nonsense_mediated_decay |
| 73828 | enst00000424512 | sg00000114395 | cyb561d2-204 | 3 | 50350845 | 50354052 | + | mRNA | protein_coding |
| 73828 | enst00000232508 | sg00000114395 | cyb561d2-201 | 3 | 50350845 | 50354069 | + | mRNA | protein_coding |
| 73841 | enst00000418577 | sg00000114395 | cyb561d2-202 | 3 | 50350858 | 50354032 | + | mRNA | protein_coding |
| 73856 | enst00000419046 | sg00000114395 | cyb561d2-203 | 3 | 50350873 | 50353393 | + | lnc_RNA | processed_transcript |
| 73875 | enst00000606589 | sg00000272104 | z84492.2-201 | 3 | 50350892 | 50367923 | + | mRNA | protein_coding |
| 74180 | enst00000490926 | sg00000114395 | cyb561d2-206 | 3 | 50351197 | 50358460 | + | lnc_RNA | processed_transcript |
| -81553 | enst00000481246 | sg00000114349 | gnat1-205 | 3 | 50193572 | 50194182 | + | lnc_RNA | processed_transcript |
| -82427 | enst00000467787 | sg00000114349 | gnat1-204 | 3 | 50192698 | 50193173 | + | lnc_RNA | retained_intron |
| -82453 | enst00000440836 | sg00000114349 | gnat1-203 | 3 | 50192672 | 50193837 | + | mRNA | protein_coding |
| 82504 | enst00000266025 | sg00000126062 | tmem115-201 | 3 | 50354750 | 50359521 | - | mRNA | protein_coding |
| -83455 | enst00000433068 | sg00000114349 | gnat1-202 | 3 | 50191670 | 50196515 | + | mRNA | protein_coding |
| -83515 | enst00000232461 | sg00000114349 | gnat1-201 | 3 | 50191610 | 50197696 | + | mRNA | protein_coding |
| 88317 | enst00000606259 | sg00000271858 | z84492.1-201 | 3 | 50365334 | 50367845 | + | lnc_RNA | lncrna |
| 88357 | enst00000607121 | sg00000271858 | z84492.1-202 | 3 | 50365374 | 50368197 | + | lnc_RNA | lncrna |
| 88368 | enst00000606665 | sg00000271858 | z84492.1-203 | 3 | 50365385 | 50368197 | + | lnc_RNA | lncrna |
| 88379 | enst00000607583 | sg00000271858 | z84492.1-204 | 3 | 50365396 | 50367463 | + | lnc_RNA | lncrna |
| 88765 | enst00000483620 | sg00000007402 | cacna2d2-207 | 3 | 50362855 | 50365782 | - | lnc_RNA | retained_intron |
| 89206 | enst00000607088 | sg00000271858 | z84492.1-205 | 3 | 50366223 | 50368197 | + | lnc_RNA | lncrna |
| 90448 | enst00000607362 | sg00000271858 | z84492.1-206 | 3 | 50367465 | 50368197 | + | lnc_RNA | lncrna |
| -90853 | enst00000470737 | sg00000001617 | sema3f-208 | 3 | 50184272 | 50185465 | + | lnc_RNA | retained_intron |
| -92487 | enst00000493743 | sg00000001617 | sema3f-209 | 3 | 50182638 | 50183608 | + | lnc_RNA | retained_intron |
| -101318 | enst00000420831 | sg00000001617 | sema3f-204 | 3 | 50173807 | 50176861 | + | mRNA | protein_coding |
| -101799 | enst00000385187 | sg00000207922 | ac104450.1-201 | 3 | 50173326 | 50173419 | + | miRNA | mirna |
| -116106 | enst00000434342 | sg00000001617 | sema3f-206 | 3 | 50159019 | 50189073 | + | mRNA | protein_coding |
| -119040 | enst00000437204 | sg00000235016 | sema3f-as1-202 | 3 | 50116022 | 50156085 | - | lnc_RNA | lncrna |
| -119105 | enst00000425674 | sg00000235016 | sema3f-as1-201 | 3 | 50118165 | 50156020 | - | lnc_RNA | lncrna |
| -119714 | enst00000426511 | sg00000001617 | sema3f-205 | 3 | 50155411 | 50173956 | + | mRNA | protein_coding |
| -119801 | enst00000002829 | sg00000001617 | sema3f-201 | 3 | 50155324 | 50189075 | + | mRNA | protein_coding |
| -120034 | enst00000413852 | sg00000001617 | sema3f-202 | 3 | 50155091 | 50189074 | + | mRNA | protein_coding |
| -120066 | enst00000450338 | sg00000001617 | sema3f-207 | 3 | 50155059 | 50183563 | + | mRNA | protein_coding |
| -120080 | enst00000414301 | sg00000001617 | sema3f-203 | 3 | 50155045 | 50182766 | + | mRNA | protein_coding |
| 142764 | enst00000365452 | sg00000202322 | rna5sp131-201 | 3 | 50419781 | 50419899 | + | pseudogenic_transcript | rrna_pseudogene |
| -158580 | enst00000461242 | sg00000003756 | rbm5-210 | 3 | 50116545 | 50117175 | + | lnc_RNA | retained_intron |
| -159773 | enst00000464988 | sg00000003756 | rbm5-213 | 3 | 50115352 | 50118570 | + | lnc_RNA | retained_intron |
| -160874 | enst00000479275 | sg00000003756 | rbm5-220 | 3 | 50114251 | 50116231 | + | lnc_RNA | retained_intron |
| -161078 | enst00000492430 | sg00000003756 | rbm5-222 | 3 | 50114047 | 50116180 | + | lnc_RNA | retained_intron |
| -161096 | enst00000475590 | sg00000003756 | rbm5-219 | 3 | 50114029 | 50117379 | + | lnc_RNA | retained_intron |
| -161763 | enst00000493993 | sg00000003756 | rbm5-224 | 3 | 50113362 | 50114242 | + | lnc_RNA | retained_intron |
| -162511 | enst00000475128 | sg00000003756 | rbm5-218 | 3 | 50112614 | 50115943 | + | lnc_RNA | retained_intron |
| -163061 | enst00000474470 | sg00000003756 | rbm5-216 | 3 | 50112064 | 50113492 | + | lnc_RNA | processed_transcript |
| -167644 | enst00000489437 | sg00000003756 | rbm5-221 | 3 | 50107481 | 50110892 | + | lnc_RNA | retained_intron |
| -168096 | enst00000441812 | sg00000003756 | rbm5-209 | 3 | 50107029 | 50113489 | + | lnc_RNA | processed_transcript |
| -168385 | enst00000494360 | sg00000003756 | rbm5-225 | 3 | 50106740 | 50109823 | + | lnc_RNA | retained_intron |
| -170151 | enst00000474818 | sg00000003756 | rbm5-217 | 3 | 50104974 | 50110757 | + | lnc_RNA | retained_intron |
| -170548 | enst00000471995 | sg00000003756 | rbm5-215 | 3 | 50104577 | 50106801 | + | lnc_RNA | retained_intron |
| -172399 | enst00000462025 | sg00000003756 | rbm5-211 | 3 | 50102726 | 50105614 | + | lnc_RNA | retained_intron |
| -172788 | enst00000496179 | sg00000003756 | rbm5-226 | 3 | 50102337 | 50108255 | + | lnc_RNA | retained_intron |
| -174137 | enst00000630404 | sg00000281691 | rbm5-as1-201 | 3 | 50099603 | 50100988 | - | lnc_RNA | lncrna |
| -181407 | enst00000395174 | sg00000003756 | rbm5-202 | 3 | 50093718 | 50108305 | + | mRNA | nonsense_mediated_decay |
| -184755 | enst00000417905 | sg00000003756 | rbm5-204 | 3 | 50090370 | 50100004 | + | mRNA | protein_coding |
| -185244 | enst00000437500 | sg00000003756 | rbm5-206 | 3 | 50089881 | 50093851 | + | mRNA | protein_coding |
| -186150 | enst00000492472 | sg00000003756 | rbm5-223 | 3 | 50088975 | 50094330 | + | lnc_RNA | retained_intron |
| -186162 | enst00000464087 | sg00000003756 | rbm5-212 | 3 | 50088963 | 50118957 | + | lnc_RNA | retained_intron |
| -186170 | enst00000438369 | sg00000003756 | rbm5-207 | 3 | 50088955 | 50100010 | + | mRNA | nonsense_mediated_decay |
| -186171 | enst00000441305 | sg00000003756 | rbm5-208 | 3 | 50088954 | 50100054 | + | mRNA | protein_coding |
| -186171 | enst00000433556 | sg00000003756 | rbm5-205 | 3 | 50088954 | 50100172 | + | lnc_RNA | retained_intron |
| -186206 | enst00000469838 | sg00000003756 | rbm5-214 | 3 | 50088919 | 50102194 | + | mRNA | protein_coding |
| -186206 | enst00000404526 | sg00000003756 | rbm5-203 | 3 | 50088919 | 50103107 | + | mRNA | protein_coding |
| -186206 | enst00000347869 | sg00000003756 | rbm5-201 | 3 | 50088919 | 50119021 | + | mRNA | protein_coding |
| -208733 | enst00000421682 | sg00000004534 | rbm6-203 | 3 | 50066392 | 50077249 | + | mRNA | protein_coding |
| -215427 | enst00000438912 | sg00000004534 | rbm6-208 | 3 | 50059698 | 50065061 | + | mRNA | protein_coding |
| -215782 | enst00000478026 | sg00000004534 | rbm6-216 | 3 | 50059343 | 50061172 | + | lnc_RNA | retained_intron |
| -221109 | enst00000466247 | sg00000004534 | rbm6-215 | 3 | 50054016 | 50057847 | + | lnc_RNA | retained_intron |
| 226406 | enst00000424201 | sg00000007402 | cacna2d2-204 | 3 | 50362892 | 50503423 | - | mRNA | protein_coding |
| 226406 | enst00000479441 | sg00000007402 | cacna2d2-206 | 3 | 50364666 | 50503423 | - | mRNA | protein_coding |
| 226406 | enst00000423994 | sg00000007402 | cacna2d2-203 | 3 | 50362799 | 50503423 | - | mRNA | protein_coding |
| 226411 | enst00000429770 | sg00000007402 | cacna2d2-205 | 3 | 50362802 | 50503428 | - | mRNA | protein_coding |
| 226580 | enst00000266039 | sg00000007402 | cacna2d2-201 | 3 | 50362802 | 50503597 | - | mRNA | protein_coding |
| 226617 | enst00000487413 | sg00000007402 | cacna2d2-208 | 3 | 50415803 | 50503634 | - | lnc_RNA | processed_transcript |
| 227227 | enst00000360963 | sg00000007402 | cacna2d2-202 | 3 | 50362802 | 50504244 | - | mRNA | protein_coding |
| -228016 | enst00000446471 | sg00000004534 | rbm6-212 | 3 | 50047109 | 50058466 | + | mRNA | protein_coding |
| -275673 | enst00000483350 | sg00000004534 | rbm6-217 | 3 | 49999452 | 50058915 | + | lnc_RNA | retained_intron |
| 284894 | enst00000422619 | sg00000088543 | c3orf18-202 | 3 | 50559525 | 50561911 | - | mRNA | protein_coding |
| 290604 | enst00000486175 | sg00000088543 | c3orf18-210 | 3 | 50559283 | 50567621 | - | lnc_RNA | processed_transcript |
| 290608 | enst00000484982 | sg00000088543 | c3orf18-208 | 3 | 50559599 | 50567625 | - | lnc_RNA | processed_transcript |
| 290625 | enst00000485902 | sg00000088543 | c3orf18-209 | 3 | 50559280 | 50567642 | - | lnc_RNA | processed_transcript |
| 290648 | enst00000426034 | sg00000088543 | c3orf18-203 | 3 | 50558025 | 50567665 | - | mRNA | protein_coding |
| 290659 | enst00000441239 | sg00000088543 | c3orf18-205 | 3 | 50558811 | 50567676 | - | mRNA | protein_coding |
| 290659 | enst00000491269 | sg00000088543 | c3orf18-211 | 3 | 50565384 | 50567676 | - | lnc_RNA | processed_transcript |
| 290663 | enst00000430746 | sg00000088543 | c3orf18-204 | 3 | 50559222 | 50567680 | - | mRNA | nonsense_mediated_decay |
| 290730 | enst00000357203 | sg00000088543 | c3orf18-201 | 3 | 50558025 | 50567747 | - | mRNA | protein_coding |
| 292135 | enst00000434410 | sg00000114735 | hemk1-203 | 3 | 50569152 | 50596168 | + | mRNA | protein_coding |
| 292180 | enst00000232854 | sg00000114735 | hemk1-201 | 3 | 50569197 | 50584935 | + | mRNA | protein_coding |
| 292461 | enst00000448997 | sg00000114735 | hemk1-205 | 3 | 50569478 | 50584748 | + | mRNA | nonsense_mediated_decay |
| 292476 | enst00000455834 | sg00000114735 | hemk1-206 | 3 | 50569493 | 50580672 | + | mRNA | protein_coding |
| 292550 | enst00000482974 | sg00000114735 | hemk1-207 | 3 | 50569567 | 50580673 | + | lnc_RNA | retained_intron |
| 292553 | enst00000424388 | sg00000114735 | hemk1-202 | 3 | 50569570 | 50577132 | + | mRNA | nonsense_mediated_decay |
| -293564 | enst00000464013 | sg00000004534 | rbm6-214 | 3 | 49981561 | 50057806 | + | lnc_RNA | processed_transcript |
| 293974 | enst00000449241 | sg00000088543 | c3orf18-206 | 3 | 50558032 | 50570991 | - | mRNA | protein_coding |
| 294010 | enst00000464080 | sg00000088543 | c3orf18-207 | 3 | 50559454 | 50571027 | - | lnc_RNA | processed_transcript |
| 300107 | enst00000443894 | sg00000114735 | hemk1-204 | 3 | 50577124 | 50580676 | + | mRNA | protein_coding |
| 324131 | enst00000624711 | sg00000280382 | ac096920.1-201 | 3 | 50599879 | 50601148 | - | lnc_RNA | lncrna |
| -334440 | enst00000488807 | sg00000004534 | rbm6-218 | 3 | 49940685 | 49967365 | + | lnc_RNA | processed_transcript |
| 334503 | enst00000486712 | sg00000114738 | mapkapk3-206 | 3 | 50611520 | 50613900 | + | lnc_RNA | processed_transcript |
| -334586 | enst00000491874 | sg00000004534 | rbm6-219 | 3 | 49940539 | 49967358 | + | lnc_RNA | processed_transcript |
| -334664 | enst00000433811 | sg00000004534 | rbm6-206 | 3 | 49940461 | 49967654 | + | mRNA | protein_coding |
| 334744 | enst00000491847 | sg00000114737 | cish-203 | 3 | 50606490 | 50611761 | - | lnc_RNA | retained_intron |
| 334755 | enst00000443053 | sg00000114737 | cish-202 | 3 | 50606496 | 50611772 | - | mRNA | protein_coding |
| 334814 | enst00000348721 | sg00000114737 | cish-201 | 3 | 50606522 | 50611831 | - | mRNA | protein_coding |
| 334891 | enst00000446044 | sg00000114738 | mapkapk3-203 | 3 | 50611908 | 50649289 | + | mRNA | protein_coding |
| -334939 | enst00000434592 | sg00000004534 | rbm6-207 | 3 | 49940186 | 50100045 | + | mRNA | nonsense_mediated_decay |
| -334974 | enst00000425608 | sg00000004534 | rbm6-205 | 3 | 49940151 | 50057853 | + | mRNA | nonsense_mediated_decay |
| -334975 | enst00000266022 | sg00000004534 | rbm6-201 | 3 | 49940150 | 50077249 | + | mRNA | protein_coding |
| -334985 | enst00000454079 | sg00000004534 | rbm6-213 | 3 | 49940140 | 50077247 | + | mRNA | nonsense_mediated_decay |
| -335023 | enst00000422955 | sg00000004534 | rbm6-204 | 3 | 49940102 | 50077248 | + | mRNA | protein_coding |
| -335028 | enst00000493652 | sg00000004534 | rbm6-220 | 3 | 49940097 | 49963027 | + | lnc_RNA | retained_intron |
| -335051 | enst00000441115 | sg00000004534 | rbm6-209 | 3 | 49940074 | 50066442 | + | lnc_RNA | processed_transcript |
| -335062 | enst00000419610 | sg00000004534 | rbm6-202 | 3 | 49940063 | 50077248 | + | mRNA | nonsense_mediated_decay |
| -335084 | enst00000443081 | sg00000004534 | rbm6-211 | 3 | 49940041 | 50077248 | + | mRNA | protein_coding |
| -335118 | enst00000442092 | sg00000004534 | rbm6-210 | 3 | 49940007 | 50077249 | + | mRNA | protein_coding |
| 335311 | enst00000497283 | sg00000114738 | mapkapk3-207 | 3 | 50612328 | 50614117 | + | lnc_RNA | processed_transcript |
| 340114 | enst00000430409 | sg00000114738 | mapkapk3-202 | 3 | 50617131 | 50647204 | + | mRNA | protein_coding |
| 340134 | enst00000621469 | sg00000114738 | mapkapk3-208 | 3 | 50617151 | 50649291 | + | mRNA | protein_coding |
| 340153 | enst00000357955 | sg00000114738 | mapkapk3-201 | 3 | 50617170 | 50649288 | + | mRNA | protein_coding |
| 340373 | enst00000457064 | sg00000114738 | mapkapk3-205 | 3 | 50617390 | 50640505 | + | mRNA | protein_coding |
| -344952 | enst00000417270 | sg00000164077 | mon1a-202 | 3 | 49908873 | 49930173 | - | mRNA | protein_coding |
| -344980 | enst00000296473 | sg00000164077 | mon1a-201 | 3 | 49908862 | 49930145 | - | mRNA | protein_coding |
| -345236 | enst00000486107 | sg00000164077 | mon1a-206 | 3 | 49908875 | 49929889 | - | lnc_RNA | retained_intron |
| -345236 | enst00000455683 | sg00000164077 | mon1a-203 | 3 | 49908873 | 49929889 | - | mRNA | protein_coding |
| -345238 | enst00000473451 | sg00000164077 | mon1a-204 | 3 | 49912397 | 49929887 | - | lnc_RNA | retained_intron |
| -345291 | enst00000483022 | sg00000164077 | mon1a-205 | 3 | 49911621 | 49929834 | - | lnc_RNA | processed_transcript |
| -345520 | enst00000493206 | sg00000164077 | mon1a-207 | 3 | 49911766 | 49929605 | - | lnc_RNA | processed_transcript |
| -345584 | enst00000645862 | sg00000164077 | mon1a-209 | 3 | 49907160 | 49929541 | - | mRNA | protein_coding |
| -345599 | enst00000642691 | sg00000164077 | mon1a-208 | 3 | 49907160 | 49929526 | - | mRNA | protein_coding |
| 369195 | enst00000451680 | sg00000114738 | mapkapk3-204 | 3 | 50646212 | 50648627 | + | mRNA | protein_coding |
| -371138 | enst00000419183 | sg00000228008 | ac105935.1-203 | 3 | 49903987 | 49916937 | + | lnc_RNA | lncrna |
| -371243 | enst00000412015 | sg00000228008 | ac105935.1-202 | 3 | 49903882 | 49906240 | + | lnc_RNA | lncrna |
| -371252 | enst00000621387 | sg00000164078 | mst1r-215 | 3 | 49887007 | 49903873 | - | mRNA | protein_coding |
| -371252 | enst00000296474 | sg00000164078 | mst1r-201 | 3 | 49887002 | 49903873 | - | mRNA | protein_coding |
| -371259 | enst00000411578 | sg00000164078 | mst1r-203 | 3 | 49887005 | 49903866 | - | mRNA | nonsense_mediated_decay |
| -371280 | enst00000424174 | sg00000228008 | ac105935.1-201 | 3 | 49903845 | 49906237 | + | lnc_RNA | lncrna |
| -371516 | enst00000613534 | sg00000164078 | mst1r-214 | 3 | 49887007 | 49903609 | - | mRNA | protein_coding |
| -371516 | enst00000612032 | sg00000164078 | mst1r-213 | 3 | 49887007 | 49903609 | - | mRNA | protein_coding |
| -371516 | enst00000344206 | sg00000164078 | mst1r-202 | 3 | 49887165 | 49903609 | - | mRNA | protein_coding |
| -371516 | enst00000468525 | sg00000164078 | mst1r-208 | 3 | 49896120 | 49903609 | - | lnc_RNA | retained_intron |
| -371516 | enst00000485044 | sg00000164078 | mst1r-209 | 3 | 49897987 | 49903609 | - | lnc_RNA | retained_intron |
| -371516 | enst00000493535 | sg00000164078 | mst1r-211 | 3 | 49897987 | 49903609 | - | lnc_RNA | retained_intron |
| -371516 | enst00000497001 | sg00000164078 | mst1r-212 | 3 | 49899006 | 49903609 | - | lnc_RNA | retained_intron |
| -375823 | enst00000435478 | sg00000230698 | ac105935.2-201 | 3 | 49899302 | 49903757 | + | lnc_RNA | lncrna |
| -378987 | enst00000467110 | sg00000164078 | mst1r-207 | 3 | 49895431 | 49896138 | - | lnc_RNA | retained_intron |
| -379052 | enst00000440292 | sg00000164078 | mst1r-205 | 3 | 49890547 | 49896073 | - | mRNA | protein_coding |
| -379309 | enst00000434765 | sg00000164078 | mst1r-204 | 3 | 49889950 | 49895816 | - | mRNA | protein_coding |
| -379686 | enst00000490053 | sg00000164078 | mst1r-210 | 3 | 49891771 | 49895439 | - | lnc_RNA | retained_intron |
| -383183 | enst00000463789 | sg00000164078 | mst1r-206 | 3 | 49890570 | 49891942 | - | lnc_RNA | retained_intron |
| 392972 | enst00000608605 | sg00000273356 | linc02019-201 | 3 | 50669989 | 50672048 | + | lnc_RNA | lncrna |
| 393675 | enst00000609204 | sg00000273356 | linc02019-202 | 3 | 50670692 | 50671730 | + | lnc_RNA | lncrna |
| -397820 | enst00000423971 | sg00000234667 | actbp13-201 | 3 | 49873347 | 49877305 | - | pseudogenic_transcript | unitary_pseudogene |
| 397910 | enst00000266037 | sg00000088538 | dock3-201 | 3 | 50674927 | 51384198 | + | mRNA | protein_coding |
| 398063 | enst00000607364 | sg00000272543 | mir4787-201 | 3 | 50675080 | 50675163 | + | miRNA | mirna |
| -405190 | enst00000480398 | sg00000164076 | camkv-212 | 3 | 49860943 | 49869935 | - | mRNA | protein_coding |
| -405194 | enst00000463537 | sg00000164076 | camkv-202 | 3 | 49857989 | 49869931 | - | mRNA | protein_coding |
| -405216 | enst00000466940 | sg00000164076 | camkv-204 | 3 | 49859293 | 49869909 | - | mRNA | protein_coding |
| -405219 | enst00000467248 | sg00000164076 | camkv-205 | 3 | 49859261 | 49869906 | - | mRNA | protein_coding |
| -405219 | enst00000488336 | sg00000164076 | camkv-215 | 3 | 49857989 | 49869906 | - | mRNA | protein_coding |
| -405219 | enst00000477224 | sg00000164076 | camkv-209 | 3 | 49857989 | 49869906 | - | mRNA | protein_coding |
| -405220 | enst00000476105 | sg00000164076 | camkv-208 | 3 | 49861789 | 49869905 | - | lnc_RNA | retained_intron |
| -405220 | enst00000498324 | sg00000164076 | camkv-216 | 3 | 49861464 | 49869905 | - | lnc_RNA | processed_transcript |
| -405220 | enst00000479704 | sg00000164076 | camkv-211 | 3 | 49861130 | 49869905 | - | lnc_RNA | retained_intron |
| -405220 | enst00000296471 | sg00000164076 | camkv-201 | 3 | 49857989 | 49869905 | - | mRNA | protein_coding |
| -405220 | enst00000466535 | sg00000164076 | camkv-203 | 3 | 49860200 | 49869905 | - | mRNA | nonsense_mediated_decay |
| -405222 | enst00000475665 | sg00000164076 | camkv-207 | 3 | 49857988 | 49869903 | - | lnc_RNA | retained_intron |
| -405222 | enst00000487726 | sg00000164076 | camkv-214 | 3 | 49859261 | 49869903 | - | mRNA | nonsense_mediated_decay |
| 408774 | enst00000423991 | sg00000228337 | ppiap69-201 | 3 | 50685551 | 50685791 | - | pseudogenic_transcript | processed_pseudogene |
| -411465 | enst00000584520 | sg00000264706 | rn7sl217p-201 | 3 | 49863375 | 49863660 | - | ncRNA | misc_rna |
| -412719 | enst00000483811 | sg00000164076 | camkv-213 | 3 | 49860494 | 49862406 | - | lnc_RNA | retained_intron |
| -412719 | enst00000472895 | sg00000164076 | camkv-206 | 3 | 49860959 | 49862406 | - | lnc_RNA | retained_intron |
| -412737 | enst00000620470 | sg00000164076 | camkv-217 | 3 | 49859255 | 49862388 | - | mRNA | protein_coding |
| -414101 | enst00000478149 | sg00000164076 | camkv-210 | 3 | 49859769 | 49861024 | - | lnc_RNA | retained_intron |
| -418551 | enst00000469027 | sg00000183763 | traip-202 | 3 | 49829256 | 49856574 | - | mRNA | protein_coding |
| -418561 | enst00000477546 | sg00000183763 | traip-206 | 3 | 49843145 | 49856564 | - | lnc_RNA | retained_intron |
| -418561 | enst00000482243 | sg00000183763 | traip-207 | 3 | 49842496 | 49856564 | - | mRNA | protein_coding |
| -418561 | enst00000331456 | sg00000183763 | traip-201 | 3 | 49828601 | 49856564 | - | mRNA | protein_coding |
| -418566 | enst00000489948 | sg00000183763 | traip-210 | 3 | 49843716 | 49856559 | - | lnc_RNA | retained_intron |
| -418566 | enst00000473863 | sg00000183763 | traip-204 | 3 | 49843851 | 49856559 | - | lnc_RNA | processed_transcript |
| -418576 | enst00000473195 | sg00000183763 | traip-203 | 3 | 49829088 | 49856549 | - | mRNA | nonsense_mediated_decay |
| -418651 | enst00000482582 | sg00000183763 | traip-208 | 3 | 49839809 | 49856474 | - | mRNA | protein_coding |
| -430538 | enst00000488860 | sg00000183763 | traip-209 | 3 | 49842486 | 49844587 | - | lnc_RNA | retained_intron |
| -434573 | enst00000475495 | sg00000183763 | traip-205 | 3 | 49831916 | 49840552 | - | lnc_RNA | retained_intron |
| 442934 | enst00000431082 | sg00000213587 | ac126120.1-201 | 3 | 50719482 | 50719951 | - | pseudogenic_transcript | processed_pseudogene |
| -445351 | enst00000491060 | sg00000183763 | traip-211 | 3 | 49828621 | 49829774 | - | lnc_RNA | retained_intron |
| -461172 | enst00000333486 | sg00000182179 | uba7-201 | 3 | 49805209 | 49813953 | - | mRNA | protein_coding |
| -461193 | enst00000494212 | sg00000182179 | uba7-210 | 3 | 49812448 | 49813932 | - | lnc_RNA | processed_transcript |
| -462654 | enst00000478688 | sg00000182179 | uba7-205 | 3 | 49811370 | 49812471 | - | lnc_RNA | retained_intron |
| -463333 | enst00000460703 | sg00000182179 | uba7-203 | 3 | 49810526 | 49811792 | - | lnc_RNA | retained_intron |
| -463670 | enst00000460516 | sg00000182179 | uba7-202 | 3 | 49810460 | 49811455 | - | lnc_RNA | retained_intron |
| -464561 | enst00000489826 | sg00000182179 | uba7-209 | 3 | 49809979 | 49810564 | - | lnc_RNA | retained_intron |
| -464775 | enst00000473992 | sg00000182179 | uba7-204 | 3 | 49809575 | 49810350 | - | lnc_RNA | retained_intron |
| -465078 | enst00000483751 | sg00000182179 | uba7-207 | 3 | 49809008 | 49810047 | - | lnc_RNA | retained_intron |
| -465238 | enst00000478875 | sg00000182179 | uba7-206 | 3 | 49809184 | 49809887 | - | lnc_RNA | retained_intron |
| -465420 | enst00000488536 | sg00000182179 | uba7-208 | 3 | 49808042 | 49809705 | - | lnc_RNA | retained_intron |
| -468835 | enst00000497908 | sg00000182179 | uba7-211 | 3 | 49805224 | 49806290 | - | lnc_RNA | retained_intron |
| -468880 | enst00000584510 | sg00000283726 | mir5193-201 | 3 | 49806137 | 49806245 | - | miRNA | mirna |
| -471738 | enst00000652560 | sg00000185614 | inka1-202 | 3 | 49803387 | 49804987 | + | mRNA | protein_coding |
| -471864 | enst00000333323 | sg00000185614 | inka1-201 | 3 | 49803261 | 49805030 | + | mRNA | protein_coding |
| -475252 | enst00000412678 | sg00000187492 | cdhr4-202 | 3 | 49790732 | 49799873 | - | mRNA | protein_coding |
| -475290 | enst00000487256 | sg00000187492 | cdhr4-205 | 3 | 49798327 | 49799835 | - | mRNA | protein_coding |
| -475290 | enst00000343366 | sg00000187492 | cdhr4-201 | 3 | 49798232 | 49799835 | - | mRNA | protein_coding |
| -481853 | enst00000460430 | sg00000187492 | cdhr4-203 | 3 | 49790732 | 49793272 | - | mRNA | nonsense_mediated_decay |
| -482193 | enst00000487666 | sg00000187492 | cdhr4-206 | 3 | 49790732 | 49792932 | - | mRNA | protein_coding |
| -482194 | enst00000462108 | sg00000187492 | cdhr4-204 | 3 | 49790732 | 49792931 | - | lnc_RNA | processed_transcript |
| -488583 | enst00000460540 | sg00000176095 | ip6k1-203 | 3 | 49727028 | 49786542 | - | mRNA | protein_coding |
| -488583 | enst00000321599 | sg00000176095 | ip6k1-201 | 3 | 49724294 | 49786542 | - | mRNA | protein_coding |
| -488585 | enst00000468463 | sg00000176095 | ip6k1-204 | 3 | 49726913 | 49786540 | - | mRNA | protein_coding |
| -488585 | enst00000395238 | sg00000176095 | ip6k1-202 | 3 | 49724295 | 49786540 | - | mRNA | protein_coding |
| -488926 | enst00000498149 | sg00000176095 | ip6k1-208 | 3 | 49748012 | 49786199 | - | lnc_RNA | processed_transcript |
| -488931 | enst00000495152 | sg00000176095 | ip6k1-206 | 3 | 49785480 | 49786194 | - | lnc_RNA | processed_transcript |
| -488931 | enst00000613416 | sg00000176095 | ip6k1-209 | 3 | 49724295 | 49786194 | - | mRNA | protein_coding |
| -499840 | enst00000463176 | sg00000244730 | ac139451.1-201 | 3 | 49775285 | 49775614 | + | pseudogenic_transcript | processed_pseudogene |
Source file: /hps/research1/birney/users/adrien/analyses/cancer_DNA_promethion/run_1_2_3_4/DNA_pipeline_2/results/methylation/pycometh_meth_comp_CGI_3/out.tsv.gz
MD5 hash: 9aa0e3f69cb4e12345c3758eb68a5efc