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CpG interval report generated on 20/05/20 with pycoMeth 0.4.6
Interval details
| pvalue rank | chromosome | start | end | length | number of samples | number of CpGs | pvalue | adjusted pvalue |
|---|---|---|---|---|---|---|---|---|
| #107 | 19 | 18777071 | 18778254 | 1183 | 3 | 42 | 3.08901e-17 | 2.87026e-15 |
Methylation log-likelihood ratio by CpG position
Distribution of CpG methylation log-likelihood ratio by sample
Closest transcripts TSS
| distance to tss | transcript id | gene id | transcript name | chromosome | start | end | strand | feature type | transcript biotype |
|---|---|---|---|---|---|---|---|---|---|
| 8781 | enst00000612179 | sg00000105664 | comp-204 | 19 | 18786118 | 18787035 | - | lnc_RNA | retained_intron |
| 13051 | enst00000222271 | sg00000105664 | comp-201 | 19 | 18782773 | 18791305 | - | mRNA | protein_coding |
| 13051 | enst00000542601 | sg00000105664 | comp-203 | 19 | 18782773 | 18791305 | - | mRNA | protein_coding |
| 13051 | enst00000425807 | sg00000105664 | comp-202 | 19 | 18782774 | 18791305 | - | mRNA | protein_coding |
| -34161 | enst00000601916 | sg00000105662 | crtc1-204 | 19 | 18742910 | 18777938 | + | mRNA | protein_coding |
| -41462 | enst00000594658 | sg00000105662 | crtc1-203 | 19 | 18735609 | 18777952 | + | mRNA | protein_coding |
| 53684 | enst00000262803 | sg00000005007 | upf1-201 | 19 | 18831938 | 18868236 | + | mRNA | protein_coding |
| 53747 | enst00000599848 | sg00000005007 | upf1-207 | 19 | 18832001 | 18868229 | + | mRNA | protein_coding |
| 54876 | enst00000601981 | sg00000005007 | upf1-213 | 19 | 18833130 | 18850691 | + | lnc_RNA | processed_transcript |
| 69879 | enst00000594504 | sg00000005007 | upf1-203 | 19 | 18848133 | 18850776 | + | lnc_RNA | processed_transcript |
| 70754 | enst00000600868 | sg00000005007 | upf1-211 | 19 | 18849008 | 18852296 | + | lnc_RNA | processed_transcript |
| 70754 | enst00000600012 | sg00000005007 | upf1-208 | 19 | 18849008 | 18852182 | + | lnc_RNA | processed_transcript |
| 70828 | enst00000598209 | sg00000005007 | upf1-205 | 19 | 18849082 | 18852236 | + | lnc_RNA | processed_transcript |
| 70912 | enst00000600310 | sg00000005007 | upf1-209 | 19 | 18849166 | 18852254 | + | lnc_RNA | processed_transcript |
| 71559 | enst00000598471 | sg00000005007 | upf1-206 | 19 | 18849813 | 18852194 | + | lnc_RNA | processed_transcript |
| 74744 | enst00000601689 | sg00000005007 | upf1-212 | 19 | 18852998 | 18855157 | + | lnc_RNA | retained_intron |
| 76659 | enst00000594243 | sg00000005007 | upf1-202 | 19 | 18854913 | 18855680 | + | lnc_RNA | retained_intron |
| 81129 | enst00000596842 | sg00000005007 | upf1-204 | 19 | 18859383 | 18868229 | + | lnc_RNA | retained_intron |
| 84679 | enst00000600689 | sg00000005007 | upf1-210 | 19 | 18862933 | 18868229 | + | lnc_RNA | retained_intron |
| -93391 | enst00000321949 | sg00000105662 | crtc1-201 | 19 | 18683680 | 18782333 | + | mRNA | protein_coding |
| -93393 | enst00000338797 | sg00000105662 | crtc1-202 | 19 | 18683678 | 18782333 | + | mRNA | protein_coding |
| 103426 | enst00000597769 | sg00000269694 | ac005197.1-201 | 19 | 18881680 | 18883376 | + | lnc_RNA | lncrna |
| 105979 | enst00000596048 | sg00000223802 | cers1-203 | 19 | 18877917 | 18884233 | - | mRNA | protein_coding |
| 117842 | enst00000623882 | sg00000223802 | cers1-204 | 19 | 18868545 | 18896096 | - | mRNA | protein_coding |
| 117881 | enst00000429504 | sg00000223802 | cers1-201 | 19 | 18877909 | 18896135 | - | mRNA | protein_coding |
| 117890 | enst00000623927 | sg00000223802 | cers1-205 | 19 | 18868552 | 18896144 | - | mRNA | protein_coding |
| 117904 | enst00000247005 | sg00000130283 | gdf1-201 | 19 | 18868545 | 18896158 | - | mRNA | protein_coding |
| 118473 | enst00000542296 | sg00000223802 | cers1-202 | 19 | 18877911 | 18896727 | - | mRNA | protein_coding |
| 121683 | enst00000600528 | sg00000105669 | cope-210 | 19 | 18899514 | 18899937 | - | lnc_RNA | processed_transcript |
| 125046 | enst00000595984 | sg00000105669 | cope-205 | 19 | 18899529 | 18903300 | - | lnc_RNA | processed_transcript |
| -132433 | enst00000596843 | sg00000167487 | klhl26-204 | 19 | 18644638 | 18667992 | + | lnc_RNA | processed_transcript |
| 134792 | enst00000598969 | sg00000105669 | cope-208 | 19 | 18899567 | 18913046 | - | lnc_RNA | processed_transcript |
| 134792 | enst00000597026 | sg00000105669 | cope-206 | 19 | 18906599 | 18913046 | - | lnc_RNA | retained_intron |
| -140014 | enst00000595423 | sg00000167487 | klhl26-203 | 19 | 18637057 | 18667866 | + | mRNA | protein_coding |
| -140043 | enst00000300976 | sg00000167487 | klhl26-201 | 19 | 18637028 | 18671721 | + | mRNA | protein_coding |
| -140043 | enst00000599006 | sg00000167487 | klhl26-205 | 19 | 18637028 | 18669798 | + | mRNA | protein_coding |
| -140043 | enst00000600657 | sg00000167487 | klhl26-206 | 19 | 18637028 | 18667849 | + | mRNA | nonsense_mediated_decay |
| -140046 | enst00000595182 | sg00000167487 | klhl26-202 | 19 | 18637025 | 18667626 | + | mRNA | protein_coding |
| 141100 | enst00000599964 | sg00000105669 | cope-209 | 19 | 18911027 | 18919354 | - | lnc_RNA | processed_transcript |
| 141109 | enst00000349893 | sg00000105669 | cope-202 | 19 | 18899517 | 18919363 | - | mRNA | protein_coding |
| 141111 | enst00000597646 | sg00000105669 | cope-207 | 19 | 18910555 | 18919365 | - | lnc_RNA | processed_transcript |
| 141121 | enst00000351079 | sg00000105669 | cope-203 | 19 | 18899573 | 18919375 | - | mRNA | protein_coding |
| 141123 | enst00000593827 | sg00000105669 | cope-204 | 19 | 18899891 | 18919377 | - | mRNA | nonsense_mediated_decay |
| 141126 | enst00000600932 | sg00000105669 | cope-211 | 19 | 18899563 | 18919380 | - | mRNA | protein_coding |
| 141133 | enst00000262812 | sg00000105669 | cope-201 | 19 | 18899514 | 18919387 | - | mRNA | protein_coding |
| 141451 | enst00000629999 | sg00000105671 | ddx49-214 | 19 | 18919705 | 18929189 | + | mRNA | nonsense_mediated_decay |
| 141461 | enst00000247003 | sg00000105671 | ddx49-201 | 19 | 18919715 | 18928630 | + | mRNA | protein_coding |
| 141461 | enst00000594021 | sg00000105671 | ddx49-203 | 19 | 18919715 | 18922507 | + | mRNA | nonsense_mediated_decay |
| 141461 | enst00000599373 | sg00000105671 | ddx49-209 | 19 | 18919715 | 18922092 | + | lnc_RNA | retained_intron |
| 141461 | enst00000599981 | sg00000105671 | ddx49-210 | 19 | 18919715 | 18921979 | + | lnc_RNA | retained_intron |
| 141473 | enst00000595858 | sg00000105671 | ddx49-204 | 19 | 18919727 | 18928626 | + | mRNA | nonsense_mediated_decay |
| 141474 | enst00000593361 | sg00000105671 | ddx49-202 | 19 | 18919728 | 18922416 | + | mRNA | nonsense_mediated_decay |
| 141475 | enst00000598972 | sg00000105671 | ddx49-207 | 19 | 18919729 | 18924282 | + | mRNA | nonsense_mediated_decay |
| 141484 | enst00000602113 | sg00000105671 | ddx49-213 | 19 | 18919738 | 18928622 | + | mRNA | nonsense_mediated_decay |
| 143493 | enst00000601803 | sg00000105671 | ddx49-212 | 19 | 18921747 | 18925188 | + | lnc_RNA | retained_intron |
| 144078 | enst00000599156 | sg00000105671 | ddx49-208 | 19 | 18922332 | 18927843 | + | lnc_RNA | processed_transcript |
| 144456 | enst00000601772 | sg00000105671 | ddx49-211 | 19 | 18922710 | 18925185 | + | lnc_RNA | processed_transcript |
| -145163 | enst00000581538 | sg00000263490 | rn7sl155p-201 | 19 | 18631646 | 18631908 | - | ncRNA | misc_rna |
| 146399 | enst00000598277 | sg00000105671 | ddx49-206 | 19 | 18924653 | 18928335 | + | lnc_RNA | retained_intron |
| 149490 | enst00000596502 | sg00000105671 | ddx49-205 | 19 | 18927744 | 18928538 | + | lnc_RNA | retained_intron |
| 154793 | enst00000595756 | sg00000051128 | homer3-208 | 19 | 18931240 | 18933047 | - | lnc_RNA | retained_intron |
| 156143 | enst00000593484 | sg00000268193 | ac002985.1-202 | 19 | 18907013 | 18934397 | - | mRNA | nonsense_mediated_decay |
| 156143 | enst00000596918 | sg00000268193 | ac002985.1-201 | 19 | 18907013 | 18934397 | - | mRNA | nonsense_mediated_decay |
| 160728 | enst00000594439 | sg00000051128 | homer3-206 | 19 | 18929439 | 18938982 | - | mRNA | protein_coding |
| 160773 | enst00000599808 | sg00000051128 | homer3-211 | 19 | 18938389 | 18939027 | - | lnc_RNA | retained_intron |
| 160795 | enst00000221222 | sg00000051128 | homer3-201 | 19 | 18929203 | 18939049 | - | mRNA | protein_coding |
| -161095 | enst00000594709 | sg00000105696 | tmem59l-202 | 19 | 18615976 | 18618454 | + | mRNA | protein_coding |
| 161381 | enst00000539827 | sg00000051128 | homer3-204 | 19 | 18929203 | 18939635 | - | mRNA | protein_coding |
| 161981 | enst00000601106 | sg00000269019 | homer3-as1-201 | 19 | 18940235 | 18947452 | + | lnc_RNA | lncrna |
| 162050 | enst00000542541 | sg00000051128 | homer3-205 | 19 | 18929443 | 18940304 | - | mRNA | protein_coding |
| 162098 | enst00000433218 | sg00000051128 | homer3-203 | 19 | 18929201 | 18940352 | - | mRNA | protein_coding |
| 162512 | enst00000599097 | sg00000051128 | homer3-210 | 19 | 18938399 | 18940766 | - | mRNA | protein_coding |
| 162868 | enst00000600077 | sg00000051128 | homer3-212 | 19 | 18933005 | 18941122 | - | mRNA | protein_coding |
| 162936 | enst00000594794 | sg00000051128 | homer3-207 | 19 | 18929206 | 18941190 | - | mRNA | protein_coding |
| 162963 | enst00000392351 | sg00000051128 | homer3-202 | 19 | 18929203 | 18941217 | - | mRNA | protein_coding |
| 163007 | enst00000596482 | sg00000051128 | homer3-209 | 19 | 18931586 | 18941261 | - | mRNA | protein_coding |
| -164194 | enst00000598660 | sg00000105696 | tmem59l-204 | 19 | 18612877 | 18621006 | + | lnc_RNA | retained_intron |
| -164198 | enst00000594859 | sg00000105696 | tmem59l-203 | 19 | 18612873 | 18617909 | + | lnc_RNA | retained_intron |
| -164201 | enst00000262817 | sg00000105696 | tmem59l-201 | 19 | 18612870 | 18621039 | + | mRNA | protein_coding |
| -169330 | enst00000593286 | sg00000006016 | crlf1-202 | 19 | 18599700 | 18607741 | - | lnc_RNA | processed_transcript |
| -169641 | enst00000600490 | sg00000105696 | tmem59l-205 | 19 | 18607430 | 18621039 | + | mRNA | protein_coding |
| -170272 | enst00000392386 | sg00000006016 | crlf1-201 | 19 | 18593237 | 18606799 | - | mRNA | protein_coding |
| -178478 | enst00000597131 | sg00000006016 | crlf1-205 | 19 | 18594362 | 18598593 | - | mRNA | protein_coding |
| 180004 | enst00000478322 | sg00000241172 | rn7sl70p-201 | 19 | 18957957 | 18958258 | - | ncRNA | misc_rna |
| -182636 | enst00000594325 | sg00000006016 | crlf1-203 | 19 | 18572220 | 18594435 | - | lnc_RNA | processed_transcript |
| -182937 | enst00000596360 | sg00000006016 | crlf1-204 | 19 | 18593237 | 18594134 | - | lnc_RNA | retained_intron |
| -187199 | enst00000595077 | sg00000006015 | rex1bd-203 | 19 | 18589872 | 18592336 | + | lnc_RNA | retained_intron |
| -187469 | enst00000595490 | sg00000006015 | rex1bd-204 | 19 | 18589602 | 18592336 | + | mRNA | protein_coding |
| -188262 | enst00000597371 | sg00000006015 | rex1bd-205 | 19 | 18588809 | 18592327 | + | lnc_RNA | retained_intron |
| -188269 | enst00000601736 | sg00000006015 | rex1bd-208 | 19 | 18588802 | 18592336 | + | mRNA | nonsense_mediated_decay |
| -188273 | enst00000600997 | sg00000006015 | rex1bd-207 | 19 | 18588798 | 18592336 | + | lnc_RNA | retained_intron |
| -188275 | enst00000450195 | sg00000006015 | rex1bd-202 | 19 | 18588796 | 18592336 | + | mRNA | protein_coding |
| -188346 | enst00000358607 | sg00000006015 | rex1bd-201 | 19 | 18588725 | 18592336 | + | mRNA | protein_coding |
| -188386 | enst00000598375 | sg00000006015 | rex1bd-206 | 19 | 18588685 | 18592334 | + | lnc_RNA | retained_intron |
| -203695 | enst00000594527 | sg00000221983 | uba52-203 | 19 | 18573376 | 18575241 | + | mRNA | protein_coding |
| -203716 | enst00000596272 | sg00000221983 | uba52-206 | 19 | 18573355 | 18575241 | + | mRNA | protein_coding |
| -203786 | enst00000599595 | sg00000221983 | uba52-214 | 19 | 18573285 | 18577290 | + | mRNA | protein_coding |
| -203806 | enst00000597451 | sg00000221983 | uba52-209 | 19 | 18573265 | 18575241 | + | mRNA | protein_coding |
| -204331 | enst00000599551 | sg00000221983 | uba52-213 | 19 | 18572740 | 18575241 | + | mRNA | protein_coding |
| -205144 | enst00000598780 | sg00000221983 | uba52-210 | 19 | 18571927 | 18575170 | + | mRNA | protein_coding |
| -205189 | enst00000595158 | sg00000221983 | uba52-204 | 19 | 18571882 | 18575234 | + | mRNA | protein_coding |
| -205192 | enst00000599256 | sg00000221983 | uba52-212 | 19 | 18571879 | 18573748 | + | mRNA | protein_coding |
| -205196 | enst00000595683 | sg00000221983 | uba52-205 | 19 | 18571875 | 18575242 | + | mRNA | protein_coding |
| -205213 | enst00000598814 | sg00000221983 | uba52-211 | 19 | 18571858 | 18573790 | + | lnc_RNA | retained_intron |
| -205214 | enst00000442744 | sg00000221983 | uba52-202 | 19 | 18571857 | 18577550 | + | mRNA | protein_coding |
| -205216 | enst00000596273 | sg00000221983 | uba52-207 | 19 | 18571855 | 18575229 | + | mRNA | protein_coding |
| -205269 | enst00000430157 | sg00000221983 | uba52-201 | 19 | 18571802 | 18575241 | + | mRNA | protein_coding |
| -205341 | enst00000596304 | sg00000221983 | uba52-208 | 19 | 18571730 | 18575202 | + | mRNA | protein_coding |
| -207696 | enst00000593791 | sg00000268983 | ac005253.2-201 | 19 | 18568506 | 18569375 | - | lnc_RNA | lncrna |
| 213364 | enst00000597095 | sg00000064607 | sugp2-207 | 19 | 18990893 | 18991618 | - | lnc_RNA | processed_transcript |
| -214980 | enst00000600099 | sg00000105700 | kxd1-212 | 19 | 18562091 | 18568698 | + | mRNA | protein_coding |
| 215188 | enst00000597163 | sg00000064607 | sugp2-208 | 19 | 18990893 | 18993442 | - | lnc_RNA | processed_transcript |
| -215291 | enst00000595870 | sg00000105700 | kxd1-205 | 19 | 18561780 | 18568509 | + | mRNA | protein_coding |
| 215459 | enst00000598863 | sg00000064607 | sugp2-212 | 19 | 18991268 | 18993713 | - | lnc_RNA | processed_transcript |
| -215511 | enst00000597411 | sg00000268030 | ac005253.1-201 | 19 | 18557775 | 18561560 | - | lnc_RNA | lncrna |
| -215551 | enst00000598830 | sg00000105700 | kxd1-209 | 19 | 18561520 | 18567272 | + | mRNA | protein_coding |
| -217959 | enst00000602094 | sg00000105700 | kxd1-217 | 19 | 18559112 | 18569378 | + | mRNA | protein_coding |
| -218244 | enst00000596244 | sg00000105700 | kxd1-206 | 19 | 18558827 | 18562072 | + | mRNA | protein_coding |
| -218417 | enst00000597438 | sg00000105700 | kxd1-208 | 19 | 18558654 | 18568601 | + | mRNA | protein_coding |
| -218532 | enst00000599319 | sg00000105700 | kxd1-211 | 19 | 18558539 | 18568720 | + | mRNA | protein_coding |
| -219173 | enst00000596785 | sg00000105700 | kxd1-207 | 19 | 18557898 | 18564990 | + | mRNA | protein_coding |
| -219179 | enst00000600654 | sg00000105700 | kxd1-214 | 19 | 18557892 | 18569091 | + | mRNA | nonsense_mediated_decay |
| -219183 | enst00000595073 | sg00000105700 | kxd1-204 | 19 | 18557888 | 18569297 | + | mRNA | protein_coding |
| -219192 | enst00000599000 | sg00000105700 | kxd1-210 | 19 | 18557879 | 18567318 | + | mRNA | protein_coding |
| -219195 | enst00000601630 | sg00000105700 | kxd1-216 | 19 | 18557876 | 18569310 | + | mRNA | protein_coding |
| -219201 | enst00000222307 | sg00000105700 | kxd1-201 | 19 | 18557870 | 18569378 | + | mRNA | protein_coding |
| -219233 | enst00000600796 | sg00000105700 | kxd1-215 | 19 | 18557838 | 18559786 | + | lnc_RNA | processed_transcript |
| -219265 | enst00000600372 | sg00000105700 | kxd1-213 | 19 | 18557806 | 18568495 | + | mRNA | protein_coding |
| -219309 | enst00000539106 | sg00000105700 | kxd1-202 | 19 | 18557762 | 18569387 | + | mRNA | protein_coding |
| -219309 | enst00000540691 | sg00000105700 | kxd1-203 | 19 | 18557762 | 18569387 | + | mRNA | protein_coding |
| 223420 | enst00000593795 | sg00000064607 | sugp2-204 | 19 | 18990888 | 19001674 | - | mRNA | nonsense_mediated_decay |
| 226015 | enst00000597280 | sg00000064607 | sugp2-209 | 19 | 18993462 | 19004269 | - | mRNA | nonsense_mediated_decay |
| -232994 | enst00000597611 | sg00000105701 | fkbp8-208 | 19 | 18538216 | 18544077 | - | mRNA | protein_coding |
| -233013 | enst00000609656 | sg00000105701 | fkbp8-214 | 19 | 18541902 | 18544058 | - | mRNA | protein_coding |
| -233494 | enst00000597960 | sg00000105701 | fkbp8-209 | 19 | 18531751 | 18543577 | - | mRNA | protein_coding |
| -233494 | enst00000601844 | sg00000105701 | fkbp8-211 | 19 | 18531814 | 18543577 | - | mRNA | nonsense_mediated_decay |
| -233498 | enst00000608443 | sg00000105701 | fkbp8-213 | 19 | 18531763 | 18543573 | - | mRNA | protein_coding |
| -233498 | enst00000544835 | sg00000105701 | fkbp8-202 | 19 | 18531752 | 18543573 | - | mRNA | protein_coding |
| -233547 | enst00000222308 | sg00000105701 | fkbp8-201 | 19 | 18531762 | 18543524 | - | mRNA | protein_coding |
| -233588 | enst00000597547 | sg00000105701 | fkbp8-207 | 19 | 18539432 | 18543483 | - | mRNA | protein_coding |
| -233826 | enst00000594844 | sg00000105701 | fkbp8-203 | 19 | 18539419 | 18543245 | - | mRNA | protein_coding |
| -234099 | enst00000596558 | sg00000105701 | fkbp8-206 | 19 | 18531762 | 18542972 | - | mRNA | protein_coding |
| -234573 | enst00000599540 | sg00000105701 | fkbp8-210 | 19 | 18538376 | 18542498 | - | mRNA | protein_coding |
| -237623 | enst00000596494 | sg00000105701 | fkbp8-205 | 19 | 18538076 | 18539448 | - | lnc_RNA | retained_intron |
| -238700 | enst00000596015 | sg00000105701 | fkbp8-204 | 19 | 18532105 | 18538371 | - | mRNA | protein_coding |
| -239367 | enst00000606531 | sg00000105701 | fkbp8-212 | 19 | 18532129 | 18537704 | - | mRNA | protein_coding |
| -244163 | enst00000596596 | sg00000269191 | ac005387.2-201 | 19 | 18532908 | 18536188 | + | lnc_RNA | lncrna |
| -245458 | enst00000597837 | sg00000268938 | ac005387.1-201 | 19 | 18531613 | 18532632 | + | lnc_RNA | lncrna |
| 252776 | enst00000598240 | sg00000064607 | sugp2-211 | 19 | 18994598 | 19031030 | - | mRNA | nonsense_mediated_decay |
| -254955 | enst00000594635 | sg00000105656 | ell-202 | 19 | 18442665 | 18522116 | - | mRNA | nonsense_mediated_decay |
| -255001 | enst00000262809 | sg00000105656 | ell-201 | 19 | 18442663 | 18522070 | - | mRNA | protein_coding |
| -255004 | enst00000596915 | sg00000105656 | ell-204 | 19 | 18472407 | 18522067 | - | lnc_RNA | retained_intron |
| 255180 | enst00000594445 | sg00000064607 | sugp2-205 | 19 | 19026014 | 19033434 | - | mRNA | protein_coding |
| 255236 | enst00000330854 | sg00000064607 | sugp2-201 | 19 | 18990893 | 19033490 | - | mRNA | nonsense_mediated_decay |
| 255242 | enst00000600239 | sg00000064607 | sugp2-213 | 19 | 18992367 | 19033496 | - | mRNA | nonsense_mediated_decay |
| 255263 | enst00000452918 | sg00000064607 | sugp2-203 | 19 | 18990893 | 19033517 | - | mRNA | protein_coding |
| 255276 | enst00000598202 | sg00000064607 | sugp2-210 | 19 | 19025557 | 19033530 | - | lnc_RNA | processed_transcript |
| 255285 | enst00000600377 | sg00000064607 | sugp2-214 | 19 | 18992925 | 19033539 | - | mRNA | protein_coding |
| 255305 | enst00000337018 | sg00000064607 | sugp2-202 | 19 | 18990893 | 19033559 | - | mRNA | protein_coding |
| 255321 | enst00000392335 | sg00000105676 | armc6-202 | 19 | 19033575 | 19058178 | + | mRNA | protein_coding |
| 255331 | enst00000537263 | sg00000105676 | armc6-210 | 19 | 19033585 | 19052187 | + | mRNA | protein_coding |
| 255349 | enst00000535612 | sg00000105676 | armc6-206 | 19 | 19033603 | 19058176 | + | mRNA | protein_coding |
| 255349 | enst00000540707 | sg00000105676 | armc6-214 | 19 | 19033603 | 19042846 | + | mRNA | protein_coding |
| 255356 | enst00000269932 | sg00000105676 | armc6-201 | 19 | 19033610 | 19058159 | + | mRNA | protein_coding |
| 255356 | enst00000541725 | sg00000105676 | armc6-216 | 19 | 19033610 | 19051832 | + | mRNA | protein_coding |
| 255359 | enst00000546344 | sg00000105676 | armc6-220 | 19 | 19033613 | 19059501 | + | mRNA | protein_coding |
| 255360 | enst00000540792 | sg00000105676 | armc6-215 | 19 | 19033614 | 19051902 | + | mRNA | protein_coding |
| 255367 | enst00000536098 | sg00000105676 | armc6-209 | 19 | 19033621 | 19051629 | + | mRNA | protein_coding |
| 255381 | enst00000541898 | sg00000105676 | armc6-217 | 19 | 19033635 | 19052195 | + | mRNA | protein_coding |
| 255386 | enst00000539985 | sg00000105676 | armc6-212 | 19 | 19033640 | 19052068 | + | mRNA | nonsense_mediated_decay |
| 255410 | enst00000543877 | sg00000105676 | armc6-218 | 19 | 19033664 | 19042779 | + | mRNA | protein_coding |
| 255562 | enst00000594773 | sg00000064607 | sugp2-206 | 19 | 18990890 | 19033816 | - | mRNA | nonsense_mediated_decay |
| 255569 | enst00000545091 | sg00000105676 | armc6-219 | 19 | 19033823 | 19055324 | + | mRNA | nonsense_mediated_decay |
| 255607 | enst00000535288 | sg00000105676 | armc6-204 | 19 | 19033861 | 19052090 | + | mRNA | protein_coding |
| 255658 | enst00000538663 | sg00000105676 | armc6-211 | 19 | 19033912 | 19051728 | + | mRNA | protein_coding |
| 255769 | enst00000601879 | sg00000064607 | sugp2-215 | 19 | 18992367 | 19034023 | - | mRNA | protein_coding |
| 255849 | enst00000392336 | sg00000105676 | armc6-203 | 19 | 19034103 | 19057881 | + | mRNA | protein_coding |
| 255947 | enst00000535758 | sg00000105676 | armc6-207 | 19 | 19034201 | 19051735 | + | mRNA | nonsense_mediated_decay |
| 275977 | enst00000535478 | sg00000105676 | armc6-205 | 19 | 19054231 | 19057954 | + | mRNA | protein_coding |
| 276055 | enst00000535795 | sg00000105676 | armc6-208 | 19 | 19054309 | 19058135 | + | mRNA | protein_coding |
| 277644 | enst00000540634 | sg00000105676 | armc6-213 | 19 | 19055898 | 19060311 | + | mRNA | protein_coding |
| 285740 | enst00000318596 | sg00000181035 | slc25a42-201 | 19 | 19063994 | 19113030 | + | mRNA | protein_coding |
| 285764 | enst00000597661 | sg00000181035 | slc25a42-204 | 19 | 19064018 | 19106450 | + | lnc_RNA | retained_intron |
| -301138 | enst00000596124 | sg00000105656 | ell-203 | 19 | 18444751 | 18475933 | - | mRNA | protein_coding |
| 317689 | enst00000594070 | sg00000181035 | slc25a42-202 | 19 | 19095943 | 19106934 | + | lnc_RNA | retained_intron |
| 323527 | enst00000600275 | sg00000181035 | slc25a42-206 | 19 | 19101781 | 19107988 | + | lnc_RNA | processed_transcript |
| 323541 | enst00000600251 | sg00000181035 | slc25a42-205 | 19 | 19101795 | 19105234 | + | lnc_RNA | retained_intron |
| -326545 | enst00000608165 | sg00000105656 | ell-205 | 19 | 18446146 | 18450526 | - | lnc_RNA | retained_intron |
| 327609 | enst00000596819 | sg00000181035 | slc25a42-203 | 19 | 19105863 | 19110646 | + | lnc_RNA | retained_intron |
| -328266 | enst00000623767 | sg00000280121 | ac010335.3-201 | 19 | 18448275 | 18448805 | - | unconfirmed_transcript | tec |
| -328796 | enst00000623166 | sg00000279262 | ac010335.2-201 | 19 | 18448275 | 18448802 | + | unconfirmed_transcript | tec |
| -331672 | enst00000610152 | sg00000105656 | ell-206 | 19 | 18444516 | 18445399 | - | lnc_RNA | retained_intron |
| -335652 | enst00000594590 | sg00000268199 | ac010335.1-201 | 19 | 18441419 | 18443597 | + | lnc_RNA | lncrna |
| -338904 | enst00000457269 | sg00000105655 | isyna1-202 | 19 | 18434809 | 18438167 | - | mRNA | protein_coding |
| -338907 | enst00000577916 | sg00000105655 | isyna1-204 | 19 | 18434822 | 18438164 | - | lnc_RNA | retained_intron |
| -338909 | enst00000583534 | sg00000105655 | isyna1-213 | 19 | 18436847 | 18438162 | - | mRNA | protein_coding |
| -338909 | enst00000581800 | sg00000105655 | isyna1-208 | 19 | 18436844 | 18438162 | - | mRNA | protein_coding |
| -338909 | enst00000582770 | sg00000105655 | isyna1-210 | 19 | 18434821 | 18438162 | - | mRNA | nonsense_mediated_decay |
| -338928 | enst00000578352 | sg00000105655 | isyna1-205 | 19 | 18436148 | 18438143 | - | mRNA | protein_coding |
| -338938 | enst00000338128 | sg00000105655 | isyna1-201 | 19 | 18434388 | 18438133 | - | mRNA | protein_coding |
| -338956 | enst00000577820 | sg00000105655 | isyna1-203 | 19 | 18434861 | 18438115 | - | mRNA | nonsense_mediated_decay |
| -338960 | enst00000582811 | sg00000105655 | isyna1-211 | 19 | 18434388 | 18438111 | - | mRNA | nonsense_mediated_decay |
| -339762 | enst00000578963 | sg00000105655 | isyna1-206 | 19 | 18434821 | 18437309 | - | mRNA | protein_coding |
| -340455 | enst00000583816 | sg00000105655 | isyna1-214 | 19 | 18435394 | 18436616 | - | lnc_RNA | retained_intron |
| -341169 | enst00000581672 | sg00000105655 | isyna1-207 | 19 | 18434821 | 18435902 | - | mRNA | protein_coding |
| -341205 | enst00000583309 | sg00000105655 | isyna1-212 | 19 | 18435416 | 18435866 | - | lnc_RNA | retained_intron |
| -341334 | enst00000582287 | sg00000105655 | isyna1-209 | 19 | 18434815 | 18435737 | - | lnc_RNA | retained_intron |
| 342721 | enst00000591443 | sg00000064545 | tmem161a-213 | 19 | 19119738 | 19120975 | - | lnc_RNA | retained_intron |
| -343796 | enst00000599699 | sg00000130511 | ssbp4-206 | 19 | 18433275 | 18434562 | + | mRNA | protein_coding |
| -344871 | enst00000593641 | sg00000130511 | ssbp4-203 | 19 | 18432200 | 18434562 | + | mRNA | protein_coding |
| -345004 | enst00000601444 | sg00000130511 | ssbp4-210 | 19 | 18432067 | 18433652 | + | lnc_RNA | retained_intron |
| -345258 | enst00000601919 | sg00000130511 | ssbp4-212 | 19 | 18431813 | 18433043 | + | lnc_RNA | retained_intron |
| -345426 | enst00000600244 | sg00000130511 | ssbp4-207 | 19 | 18431645 | 18433100 | + | lnc_RNA | retained_intron |
| -351031 | enst00000600628 | sg00000130511 | ssbp4-208 | 19 | 18426040 | 18431862 | + | lnc_RNA | processed_transcript |
| 352257 | enst00000591031 | sg00000064545 | tmem161a-212 | 19 | 19121342 | 19130511 | - | lnc_RNA | retained_intron |
| 354147 | enst00000587925 | sg00000064545 | tmem161a-208 | 19 | 19120992 | 19132401 | - | mRNA | protein_coding |
| -356968 | enst00000602088 | sg00000130511 | ssbp4-213 | 19 | 18420103 | 18432579 | + | mRNA | protein_coding |
| -357422 | enst00000625926 | sg00000130511 | ssbp4-215 | 19 | 18419649 | 18426011 | + | mRNA | protein_coding |
| -357447 | enst00000601614 | sg00000130511 | ssbp4-211 | 19 | 18419624 | 18431705 | + | mRNA | nonsense_mediated_decay |
| -357465 | enst00000607020 | sg00000130511 | ssbp4-214 | 19 | 18419606 | 18432023 | + | mRNA | nonsense_mediated_decay |
| -357641 | enst00000598159 | sg00000130511 | ssbp4-205 | 19 | 18419430 | 18432174 | + | lnc_RNA | processed_transcript |
| -357645 | enst00000601357 | sg00000130511 | ssbp4-209 | 19 | 18419426 | 18431838 | + | mRNA | protein_coding |
| -357673 | enst00000270061 | sg00000130511 | ssbp4-201 | 19 | 18419398 | 18434562 | + | mRNA | protein_coding |
| -357735 | enst00000348495 | sg00000130511 | ssbp4-202 | 19 | 18419336 | 18434562 | + | mRNA | protein_coding |
| -358207 | enst00000597724 | sg00000130511 | ssbp4-204 | 19 | 18418864 | 18432214 | + | mRNA | protein_coding |
| 360193 | enst00000587583 | sg00000064545 | tmem161a-206 | 19 | 19119660 | 19138447 | - | mRNA | protein_coding |
| 360193 | enst00000592147 | sg00000064545 | tmem161a-214 | 19 | 19132658 | 19138447 | - | lnc_RNA | processed_transcript |
| 360199 | enst00000590216 | sg00000064545 | tmem161a-211 | 19 | 19121657 | 19138453 | - | mRNA | nonsense_mediated_decay |
| 360208 | enst00000587985 | sg00000064545 | tmem161a-209 | 19 | 19119640 | 19138462 | - | mRNA | nonsense_mediated_decay |
| 360208 | enst00000589448 | sg00000064545 | tmem161a-210 | 19 | 19119649 | 19138462 | - | lnc_RNA | retained_intron |
| 360212 | enst00000450333 | sg00000064545 | tmem161a-202 | 19 | 19119169 | 19138466 | - | mRNA | protein_coding |
| 360213 | enst00000587096 | sg00000064545 | tmem161a-204 | 19 | 19121084 | 19138467 | - | mRNA | protein_coding |
| 360218 | enst00000586357 | sg00000064545 | tmem161a-203 | 19 | 19132880 | 19138472 | - | lnc_RNA | retained_intron |
| 360224 | enst00000162044 | sg00000064545 | tmem161a-201 | 19 | 19119169 | 19138478 | - | mRNA | protein_coding |
| 360239 | enst00000587406 | sg00000064545 | tmem161a-205 | 19 | 19119615 | 19138493 | - | lnc_RNA | retained_intron |
| 360247 | enst00000592369 | sg00000064545 | tmem161a-215 | 19 | 19130192 | 19138501 | - | mRNA | protein_coding |
| 360259 | enst00000587915 | sg00000064545 | tmem161a-207 | 19 | 19130265 | 19138513 | - | mRNA | protein_coding |
| -379449 | enst00000339007 | sg00000175489 | lrrc25-201 | 19 | 18391137 | 18397622 | - | mRNA | protein_coding |
| -379460 | enst00000595840 | sg00000175489 | lrrc25-202 | 19 | 18391149 | 18397611 | - | mRNA | protein_coding |
| -390151 | enst00000594925 | sg00000130513 | gdf15-202 | 19 | 18386920 | 18388484 | + | lnc_RNA | processed_transcript |
| -390509 | enst00000578735 | sg00000264175 | mir3189-201 | 19 | 18386562 | 18386634 | + | miRNA | mirna |
| -390913 | enst00000252809 | sg00000130513 | gdf15-201 | 19 | 18386158 | 18389176 | + | mRNA | protein_coding |
| 391994 | enst00000410050 | sg00000213999 | mef2b-203 | 19 | 19145569 | 19170248 | - | mRNA | protein_coding |
| 392009 | enst00000424583 | sg00000213999 | mef2b-204 | 19 | 19145567 | 19170263 | - | mRNA | protein_coding |
| 392009 | enst00000409224 | sg00000213999 | mef2b-201 | 19 | 19145568 | 19170263 | - | mRNA | protein_coding |
| 392035 | enst00000409447 | sg00000213999 | mef2b-202 | 19 | 19145593 | 19170289 | - | mRNA | protein_coding |
| -394901 | enst00000595973 | sg00000130513 | gdf15-203 | 19 | 18382170 | 18388347 | + | mRNA | protein_coding |
| -402319 | enst00000604609 | sg00000130513 | gdf15-205 | 19 | 18374752 | 18386072 | + | lnc_RNA | processed_transcript |
| -402340 | enst00000597765 | sg00000130513 | gdf15-204 | 19 | 18374731 | 18386208 | + | mRNA | protein_coding |
| 402347 | enst00000591566 | sg00000254901 | borcs8-209 | 19 | 19176904 | 19180601 | - | lnc_RNA | retained_intron |
| 404093 | enst00000602276 | sg00000064489 | borcs8-mef2b-203 | 19 | 19146868 | 19182347 | - | lnc_RNA | processed_transcript |
| 407844 | enst00000588208 | sg00000254901 | borcs8-207 | 19 | 19176932 | 19186098 | - | mRNA | protein_coding |
| 408773 | enst00000591398 | sg00000254901 | borcs8-208 | 19 | 19182460 | 19187027 | - | lnc_RNA | retained_intron |
| 413868 | enst00000602689 | sg00000064489 | borcs8-mef2b-205 | 19 | 19150686 | 19192122 | - | mRNA | nonsense_mediated_decay |
| 413874 | enst00000630940 | sg00000064489 | borcs8-mef2b-207 | 19 | 19145570 | 19192128 | - | mRNA | nonsense_mediated_decay |
| 413877 | enst00000444486 | sg00000213999 | mef2b-205 | 19 | 19145567 | 19192131 | - | mRNA | protein_coding |
| 413884 | enst00000514819 | sg00000064489 | borcs8-mef2b-202 | 19 | 19145584 | 19192138 | - | mRNA | protein_coding |
| 413885 | enst00000585679 | sg00000254901 | borcs8-206 | 19 | 19176906 | 19192139 | - | mRNA | protein_coding |
| 413893 | enst00000602438 | sg00000064489 | borcs8-mef2b-204 | 19 | 19149293 | 19192147 | - | lnc_RNA | processed_transcript |
| 413898 | enst00000462790 | sg00000254901 | borcs8-202 | 19 | 19176906 | 19192152 | - | mRNA | protein_coding |
| 413904 | enst00000602804 | sg00000064489 | borcs8-mef2b-206 | 19 | 19145572 | 19192158 | - | mRNA | nonsense_mediated_decay |
| 413904 | enst00000354191 | sg00000064489 | borcs8-mef2b-201 | 19 | 19145569 | 19192158 | - | mRNA | nonsense_mediated_decay |
| 413975 | enst00000421262 | sg00000064490 | rfxank-204 | 19 | 19192229 | 19197025 | + | mRNA | protein_coding |
| 413989 | enst00000456252 | sg00000064490 | rfxank-205 | 19 | 19192243 | 19201866 | + | mRNA | protein_coding |
| 414004 | enst00000303088 | sg00000064490 | rfxank-201 | 19 | 19192258 | 19201866 | + | mRNA | protein_coding |
| 414020 | enst00000593273 | sg00000064490 | rfxank-215 | 19 | 19192274 | 19197621 | + | mRNA | protein_coding |
| 414158 | enst00000488252 | sg00000254901 | borcs8-204 | 19 | 19176903 | 19192412 | - | mRNA | nonsense_mediated_decay |
| 414334 | enst00000494489 | sg00000254901 | borcs8-205 | 19 | 19177008 | 19192588 | - | lnc_RNA | processed_transcript |
| 414335 | enst00000477565 | sg00000254901 | borcs8-203 | 19 | 19181882 | 19192589 | - | mRNA | protein_coding |
| 414337 | enst00000462498 | sg00000254901 | borcs8-201 | 19 | 19182623 | 19192591 | - | lnc_RNA | retained_intron |
| 414509 | enst00000407360 | sg00000064490 | rfxank-203 | 19 | 19192763 | 19201802 | + | mRNA | protein_coding |
| 414587 | enst00000540981 | sg00000064490 | rfxank-209 | 19 | 19192841 | 19198722 | + | mRNA | protein_coding |
| 414592 | enst00000543157 | sg00000064490 | rfxank-212 | 19 | 19192846 | 19197434 | + | lnc_RNA | retained_intron |
| 414657 | enst00000392324 | sg00000064490 | rfxank-202 | 19 | 19192911 | 19201866 | + | mRNA | protein_coding |
| 414659 | enst00000541873 | sg00000064490 | rfxank-210 | 19 | 19192913 | 19198901 | + | lnc_RNA | retained_intron |
| 414716 | enst00000545522 | sg00000064490 | rfxank-214 | 19 | 19192970 | 19197663 | + | lnc_RNA | retained_intron |
| 415798 | enst00000535017 | sg00000064490 | rfxank-206 | 19 | 19194052 | 19199195 | + | mRNA | protein_coding |
| 419001 | enst00000543118 | sg00000064490 | rfxank-211 | 19 | 19197255 | 19198161 | + | lnc_RNA | retained_intron |
| -419565 | enst00000595552 | sg00000130517 | pgpep1-204 | 19 | 18357506 | 18369948 | + | mRNA | protein_coding |
| -419593 | enst00000597663 | sg00000130517 | pgpep1-207 | 19 | 18357478 | 18369930 | + | mRNA | protein_coding |
| 420383 | enst00000540977 | sg00000064490 | rfxank-208 | 19 | 19198637 | 19201869 | + | lnc_RNA | retained_intron |
| 420900 | enst00000536253 | sg00000064490 | rfxank-207 | 19 | 19199154 | 19201866 | + | mRNA | protein_coding |
| 420900 | enst00000544923 | sg00000064490 | rfxank-213 | 19 | 19199154 | 19201863 | + | mRNA | protein_coding |
| 424590 | enst00000539678 | sg00000184162 | nr2c2ap-205 | 19 | 19202078 | 19202844 | - | mRNA | protein_coding |
| 425092 | enst00000537399 | sg00000184162 | nr2c2ap-203 | 19 | 19201426 | 19203346 | - | lnc_RNA | retained_intron |
| 425103 | enst00000420605 | sg00000184162 | nr2c2ap-202 | 19 | 19201416 | 19203357 | - | mRNA | protein_coding |
| 425105 | enst00000544883 | sg00000184162 | nr2c2ap-207 | 19 | 19201639 | 19203359 | - | mRNA | protein_coding |
| 425121 | enst00000538165 | sg00000184162 | nr2c2ap-204 | 19 | 19202058 | 19203375 | - | mRNA | protein_coding |
| 425157 | enst00000539693 | sg00000184162 | nr2c2ap-206 | 19 | 19201873 | 19203411 | - | lnc_RNA | retained_intron |
| 425170 | enst00000331552 | sg00000184162 | nr2c2ap-201 | 19 | 19201416 | 19203424 | - | mRNA | protein_coding |
| 433704 | enst00000252575 | sg00000130287 | ncan-201 | 19 | 19211958 | 19252233 | + | mRNA | protein_coding |
| -436432 | enst00000597431 | sg00000130517 | pgpep1-206 | 19 | 18340639 | 18363688 | + | mRNA | protein_coding |
| -436457 | enst00000600283 | sg00000130517 | pgpep1-208 | 19 | 18340614 | 18364218 | + | mRNA | nonsense_mediated_decay |
| -436460 | enst00000596962 | sg00000130517 | pgpep1-205 | 19 | 18340611 | 18363998 | + | mRNA | nonsense_mediated_decay |
| -436462 | enst00000252813 | sg00000130517 | pgpep1-201 | 19 | 18340609 | 18364342 | + | mRNA | protein_coding |
| -436472 | enst00000595066 | sg00000130517 | pgpep1-203 | 19 | 18340599 | 18357857 | + | mRNA | protein_coding |
| -436473 | enst00000604499 | sg00000130517 | pgpep1-209 | 19 | 18340598 | 18363678 | + | mRNA | protein_coding |
| -436473 | enst00000269919 | sg00000130517 | pgpep1-202 | 19 | 18340598 | 18369950 | + | mRNA | protein_coding |
| -443795 | enst00000465715 | sg00000239821 | rn7sl513p-201 | 19 | 18333276 | 18333573 | + | ncRNA | misc_rna |
| 448589 | enst00000590187 | sg00000130287 | ncan-204 | 19 | 19226843 | 19238792 | + | lnc_RNA | retained_intron |
| -453797 | enst00000593829 | sg00000130520 | lsm4-203 | 19 | 18306230 | 18323274 | - | mRNA | protein_coding |
| -453959 | enst00000594828 | sg00000130520 | lsm4-204 | 19 | 18309291 | 18323112 | - | mRNA | protein_coding |
| -453974 | enst00000593564 | sg00000130520 | lsm4-202 | 19 | 18312169 | 18323097 | - | lnc_RNA | retained_intron |
| -454000 | enst00000252816 | sg00000130520 | lsm4-201 | 19 | 18306907 | 18323071 | - | mRNA | protein_coding |
| -454011 | enst00000600289 | sg00000130520 | lsm4-206 | 19 | 18306916 | 18323060 | - | mRNA | nonsense_mediated_decay |
| 454601 | enst00000517164 | sg00000252973 | rnu6-1028p-201 | 19 | 19232855 | 19232947 | + | snRNA | snrna |
| 460005 | enst00000588231 | sg00000130287 | ncan-203 | 19 | 19238259 | 19249929 | + | mRNA | protein_coding |
| 460138 | enst00000585410 | sg00000130287 | ncan-202 | 19 | 19238392 | 19249019 | + | lnc_RNA | retained_intron |
| -460812 | enst00000597776 | sg00000130520 | lsm4-205 | 19 | 18309751 | 18316259 | - | lnc_RNA | retained_intron |
| 477384 | enst00000624068 | sg00000280282 | ac138430.2-201 | 19 | 19255638 | 19256141 | + | unconfirmed_transcript | tec |
| 483429 | enst00000592862 | sg00000187664 | hapln4-202 | 19 | 19258846 | 19261683 | - | lnc_RNA | retained_intron |
| 484550 | enst00000291481 | sg00000187664 | hapln4-201 | 19 | 19254756 | 19262804 | - | mRNA | protein_coding |
| 488462 | enst00000590431 | sg00000213996 | tm6sf2-204 | 19 | 19264364 | 19266716 | - | lnc_RNA | retained_intron |
| -491576 | enst00000467018 | sg00000241464 | rpl39p38-201 | 19 | 18285343 | 18285495 | - | pseudogenic_transcript | processed_pseudogene |
| -494994 | enst00000583494 | sg00000267959 | mir3188-201 | 19 | 18282077 | 18282161 | + | miRNA | mirna |
| 495002 | enst00000591001 | sg00000213996 | tm6sf2-205 | 19 | 19264364 | 19273256 | - | lnc_RNA | retained_intron |
| 495011 | enst00000431465 | sg00000213996 | tm6sf2-202 | 19 | 19264365 | 19273265 | - | lnc_RNA | retained_intron |
| 495047 | enst00000389363 | sg00000213996 | tm6sf2-201 | 19 | 19264366 | 19273301 | - | mRNA | protein_coding |
| 495115 | enst00000586064 | sg00000267629 | ac138430.1-201 | 19 | 19254748 | 19273369 | - | lnc_RNA | retained_intron |
| 495137 | enst00000586107 | sg00000213996 | tm6sf2-203 | 19 | 19268685 | 19273391 | - | lnc_RNA | processed_transcript |
| -495449 | enst00000252818 | sg00000130522 | jund-201 | 19 | 18279694 | 18281622 | - | mRNA | protein_coding |
| -496142 | enst00000600972 | sg00000130522 | jund-202 | 19 | 18280019 | 18280929 | - | mRNA | protein_coding |
Source file: /hps/research1/birney/users/adrien/analyses/cancer_DNA_promethion/run_1_2_3_4/DNA_pipeline_2/results/methylation/pycometh_meth_comp_CGI_3/out.tsv.gz
MD5 hash: 9aa0e3f69cb4e12345c3758eb68a5efc