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CpG interval report generated on 20/05/20 with pycoMeth 0.4.6
Interval details
| pvalue rank | chromosome | start | end | length | number of samples | number of CpGs | pvalue | adjusted pvalue |
|---|---|---|---|---|---|---|---|---|
| #106 | 19 | 46648377 | 46650496 | 2119 | 3 | 52 | 2.48711e-17 | 2.33343e-15 |
Methylation log-likelihood ratio by CpG position
Distribution of CpG methylation log-likelihood ratio by sample
Closest transcripts TSS
| distance to tss | transcript id | gene id | transcript name | chromosome | start | end | strand | feature type | transcript biotype |
|---|---|---|---|---|---|---|---|---|---|
| 4161 | enst00000300875 | sg00000197380 | dact3-201 | 19 | 46647612 | 46654657 | - | mRNA | protein_coding |
| -9216 | enst00000624917 | sg00000279161 | ac093503.3-201 | 19 | 46636810 | 46639161 | - | unconfirmed_transcript | tec |
| 9868 | enst00000525008 | sg00000245598 | dact3-as1-202 | 19 | 46660364 | 46677447 | + | lnc_RNA | lncrna |
| 10642 | enst00000410105 | sg00000197380 | dact3-203 | 19 | 46650148 | 46661138 | - | mRNA | protein_coding |
| 10686 | enst00000391916 | sg00000197380 | dact3-202 | 19 | 46647551 | 46661182 | - | mRNA | protein_coding |
| 10982 | enst00000500689 | sg00000245598 | dact3-as1-201 | 19 | 46661478 | 46671341 | + | lnc_RNA | lncrna |
| 11489 | enst00000525352 | sg00000245598 | dact3-as1-203 | 19 | 46661985 | 46673636 | + | lnc_RNA | lncrna |
| -13692 | enst00000300873 | sg00000167414 | gng8-201 | 19 | 46634076 | 46634685 | - | mRNA | protein_coding |
| -23288 | enst00000291294 | sg00000160013 | ptgir-201 | 19 | 46620468 | 46625089 | - | mRNA | protein_coding |
| -23305 | enst00000598865 | sg00000160013 | ptgir-206 | 19 | 46621167 | 46625072 | - | mRNA | protein_coding |
| -23305 | enst00000597185 | sg00000160013 | ptgir-205 | 19 | 46621167 | 46625072 | - | mRNA | protein_coding |
| -23305 | enst00000594275 | sg00000160013 | ptgir-202 | 19 | 46621167 | 46625072 | - | mRNA | protein_coding |
| -23340 | enst00000596260 | sg00000160013 | ptgir-204 | 19 | 46623130 | 46625037 | - | mRNA | protein_coding |
| -23630 | enst00000595460 | sg00000160013 | ptgir-203 | 19 | 46622722 | 46624747 | - | lnc_RNA | retained_intron |
| 35684 | enst00000593492 | sg00000105287 | prkd2-204 | 19 | 46678529 | 46686180 | - | lnc_RNA | processed_transcript |
| -37598 | enst00000597609 | sg00000269292 | ac093503.2-201 | 19 | 46609277 | 46610779 | - | lnc_RNA | lncrna |
| 38572 | enst00000473668 | sg00000243560 | rn7sl364p-201 | 19 | 46688797 | 46689068 | - | ncRNA | misc_rna |
| 39213 | enst00000602155 | sg00000105287 | prkd2-217 | 19 | 46674319 | 46689709 | - | lnc_RNA | retained_intron |
| -40415 | enst00000486500 | sg00000160014 | calm3-205 | 19 | 46607962 | 46610781 | + | lnc_RNA | retained_intron |
| 41355 | enst00000599464 | sg00000105287 | prkd2-213 | 19 | 46681683 | 46691851 | - | lnc_RNA | retained_intron |
| 41489 | enst00000597390 | sg00000105287 | prkd2-208 | 19 | 46674314 | 46691985 | - | mRNA | nonsense_mediated_decay |
| -43184 | enst00000482455 | sg00000160014 | calm3-204 | 19 | 46605193 | 46609243 | + | lnc_RNA | processed_transcript |
| -46305 | enst00000596362 | sg00000160014 | calm3-208 | 19 | 46602072 | 46609770 | + | mRNA | protein_coding |
| -46308 | enst00000599839 | sg00000160014 | calm3-212 | 19 | 46602069 | 46609996 | + | mRNA | protein_coding |
| 46829 | enst00000599019 | sg00000105287 | prkd2-212 | 19 | 46674339 | 46697325 | - | lnc_RNA | retained_intron |
| 46845 | enst00000597589 | sg00000105287 | prkd2-209 | 19 | 46674346 | 46697341 | - | lnc_RNA | retained_intron |
| -47010 | enst00000597868 | sg00000160014 | calm3-210 | 19 | 46601367 | 46609305 | + | lnc_RNA | retained_intron |
| -47011 | enst00000594523 | sg00000160014 | calm3-206 | 19 | 46601366 | 46609182 | + | mRNA | protein_coding |
| -47030 | enst00000602169 | sg00000160014 | calm3-213 | 19 | 46601347 | 46609303 | + | mRNA | nonsense_mediated_decay |
| -47032 | enst00000595072 | sg00000160014 | calm3-207 | 19 | 46601345 | 46609234 | + | lnc_RNA | retained_intron |
| -47047 | enst00000598871 | sg00000160014 | calm3-211 | 19 | 46601330 | 46609190 | + | mRNA | protein_coding |
| -47047 | enst00000291295 | sg00000160014 | calm3-201 | 19 | 46601330 | 46610782 | + | mRNA | protein_coding |
| -47068 | enst00000477244 | sg00000160014 | calm3-203 | 19 | 46601309 | 46609275 | + | lnc_RNA | processed_transcript |
| -47101 | enst00000597743 | sg00000160014 | calm3-209 | 19 | 46601276 | 46609319 | + | mRNA | protein_coding |
| -47177 | enst00000414155 | sg00000230510 | ppp5d1-201 | 19 | 46518679 | 46601200 | - | mRNA | protein_coding |
| -47303 | enst00000391918 | sg00000160014 | calm3-202 | 19 | 46601074 | 46609305 | + | mRNA | protein_coding |
| -47445 | enst00000602017 | sg00000230510 | ppp5d1-205 | 19 | 46480796 | 46600932 | - | mRNA | protein_coding |
| -47446 | enst00000593359 | sg00000230510 | ppp5d1-202 | 19 | 46525476 | 46600931 | - | mRNA | protein_coding |
| -47452 | enst00000594701 | sg00000230510 | ppp5d1-203 | 19 | 46598149 | 46600925 | - | lnc_RNA | retained_intron |
| -47516 | enst00000593888 | sg00000268423 | ac093503.1-201 | 19 | 46547056 | 46600861 | - | lnc_RNA | lncrna |
| 58849 | enst00000390179 | sg00000211513 | mir320e-201 | 19 | 46709293 | 46709345 | - | miRNA | mirna |
| -59223 | enst00000598743 | sg00000268423 | ac093503.1-202 | 19 | 46568078 | 46589154 | - | lnc_RNA | lncrna |
| 63527 | enst00000601605 | sg00000105287 | prkd2-215 | 19 | 46697840 | 46714023 | - | mRNA | protein_coding |
| 63536 | enst00000597088 | sg00000105287 | prkd2-207 | 19 | 46710354 | 46714032 | - | lnc_RNA | retained_intron |
| 63828 | enst00000600194 | sg00000105287 | prkd2-214 | 19 | 46674320 | 46714324 | - | mRNA | protein_coding |
| 64103 | enst00000595132 | sg00000105287 | prkd2-205 | 19 | 46704487 | 46714599 | - | mRNA | protein_coding |
| 65748 | enst00000597641 | sg00000105287 | prkd2-210 | 19 | 46704337 | 46716244 | - | mRNA | nonsense_mediated_decay |
| 66100 | enst00000291281 | sg00000105287 | prkd2-201 | 19 | 46674316 | 46716596 | - | mRNA | protein_coding |
| 66586 | enst00000601806 | sg00000105287 | prkd2-216 | 19 | 46674275 | 46717082 | - | mRNA | protein_coding |
| 66616 | enst00000593363 | sg00000105287 | prkd2-203 | 19 | 46716165 | 46717112 | - | mRNA | protein_coding |
| 66618 | enst00000598633 | sg00000105287 | prkd2-211 | 19 | 46704634 | 46717114 | - | mRNA | protein_coding |
| 66619 | enst00000595515 | sg00000105287 | prkd2-206 | 19 | 46674508 | 46717115 | - | mRNA | protein_coding |
| 66631 | enst00000433867 | sg00000105287 | prkd2-202 | 19 | 46674317 | 46717127 | - | mRNA | protein_coding |
| 71256 | enst00000601869 | sg00000090372 | strn4-222 | 19 | 46719513 | 46721752 | - | lnc_RNA | retained_intron |
| 72715 | enst00000600615 | sg00000090372 | strn4-219 | 19 | 46720409 | 46723211 | - | mRNA | protein_coding |
| 74396 | enst00000598074 | sg00000090372 | strn4-216 | 19 | 46722923 | 46724892 | - | lnc_RNA | retained_intron |
| 75769 | enst00000594581 | sg00000090372 | strn4-208 | 19 | 46719513 | 46726265 | - | lnc_RNA | retained_intron |
| 77463 | enst00000594287 | sg00000090372 | strn4-206 | 19 | 46722338 | 46727959 | - | mRNA | protein_coding |
| 77819 | enst00000601631 | sg00000090372 | strn4-221 | 19 | 46722860 | 46728315 | - | lnc_RNA | retained_intron |
| 77835 | enst00000602223 | sg00000090372 | strn4-223 | 19 | 46725481 | 46728331 | - | lnc_RNA | processed_transcript |
| 77910 | enst00000594357 | sg00000090372 | strn4-207 | 19 | 46722934 | 46728406 | - | lnc_RNA | processed_transcript |
| 78107 | enst00000600716 | sg00000269487 | ac008635.2-201 | 19 | 46728603 | 46732700 | + | lnc_RNA | lncrna |
| 80361 | enst00000595357 | sg00000090372 | strn4-211 | 19 | 46720699 | 46730857 | - | lnc_RNA | retained_intron |
| 80435 | enst00000599231 | sg00000090372 | strn4-217 | 19 | 46727453 | 46730931 | - | lnc_RNA | retained_intron |
| 81292 | enst00000596016 | sg00000090372 | strn4-213 | 19 | 46728685 | 46731788 | - | lnc_RNA | processed_transcript |
| 82953 | enst00000594847 | sg00000090372 | strn4-210 | 19 | 46727907 | 46733449 | - | lnc_RNA | retained_intron |
| 85816 | enst00000410682 | sg00000222614 | ac008635.1-201 | 19 | 46736312 | 46736419 | + | ncRNA | misc_rna |
| 85853 | enst00000602397 | sg00000090372 | strn4-224 | 19 | 46728687 | 46736349 | - | lnc_RNA | processed_transcript |
| 87676 | enst00000600358 | sg00000090372 | strn4-218 | 19 | 46724828 | 46738172 | - | mRNA | nonsense_mediated_decay |
| 89011 | enst00000597021 | sg00000090372 | strn4-214 | 19 | 46733110 | 46739507 | - | mRNA | protein_coding |
| -89736 | enst00000503632 | sg00000249210 | gapdhp38-201 | 19 | 46558641 | 46559642 | + | pseudogenic_transcript | processed_pseudogene |
| 95334 | enst00000597063 | sg00000090372 | strn4-215 | 19 | 46733075 | 46745830 | - | mRNA | protein_coding |
| 95550 | enst00000601299 | sg00000181027 | fkrp-225 | 19 | 46746046 | 46755937 | + | mRNA | protein_coding |
| 95550 | enst00000596974 | sg00000181027 | fkrp-212 | 19 | 46746046 | 46755792 | + | lnc_RNA | processed_transcript |
| 95558 | enst00000595570 | sg00000181027 | fkrp-209 | 19 | 46746054 | 46755634 | + | mRNA | protein_coding |
| 95561 | enst00000318584 | sg00000181027 | fkrp-201 | 19 | 46746057 | 46758575 | + | mRNA | protein_coding |
| 95561 | enst00000593995 | sg00000181027 | fkrp-207 | 19 | 46746057 | 46748963 | + | lnc_RNA | retained_intron |
| 95561 | enst00000600977 | sg00000181027 | fkrp-224 | 19 | 46746057 | 46755449 | + | lnc_RNA | processed_transcript |
| 95561 | enst00000598271 | sg00000181027 | fkrp-216 | 19 | 46746057 | 46755537 | + | mRNA | protein_coding |
| 95561 | enst00000597313 | sg00000181027 | fkrp-213 | 19 | 46746057 | 46755629 | + | mRNA | protein_coding |
| 95561 | enst00000593875 | sg00000181027 | fkrp-204 | 19 | 46746057 | 46755709 | + | mRNA | protein_coding |
| 95561 | enst00000391909 | sg00000181027 | fkrp-202 | 19 | 46746057 | 46757913 | + | mRNA | protein_coding |
| 95561 | enst00000600646 | sg00000181027 | fkrp-220 | 19 | 46746057 | 46776988 | + | lnc_RNA | processed_transcript |
| 95562 | enst00000597339 | sg00000181027 | fkrp-214 | 19 | 46746058 | 46762006 | + | lnc_RNA | processed_transcript |
| 95562 | enst00000594467 | sg00000181027 | fkrp-208 | 19 | 46746058 | 46755984 | + | mRNA | protein_coding |
| 95562 | enst00000600005 | sg00000181027 | fkrp-217 | 19 | 46746058 | 46755792 | + | mRNA | protein_coding |
| 95562 | enst00000600227 | sg00000181027 | fkrp-218 | 19 | 46746058 | 46755768 | + | mRNA | protein_coding |
| 95562 | enst00000602181 | sg00000181027 | fkrp-226 | 19 | 46746058 | 46755737 | + | mRNA | protein_coding |
| 95562 | enst00000600629 | sg00000181027 | fkrp-219 | 19 | 46746058 | 46755690 | + | mRNA | protein_coding |
| 95562 | enst00000595868 | sg00000181027 | fkrp-210 | 19 | 46746058 | 46755660 | + | mRNA | protein_coding |
| 95562 | enst00000593800 | sg00000181027 | fkrp-203 | 19 | 46746058 | 46755753 | + | mRNA | protein_coding |
| 95562 | enst00000600681 | sg00000181027 | fkrp-221 | 19 | 46746058 | 46748802 | + | lnc_RNA | processed_transcript |
| 95562 | enst00000600872 | sg00000181027 | fkrp-223 | 19 | 46746058 | 46754025 | + | lnc_RNA | processed_transcript |
| 95562 | enst00000602250 | sg00000181027 | fkrp-227 | 19 | 46746058 | 46755610 | + | mRNA | protein_coding |
| 95563 | enst00000596460 | sg00000181027 | fkrp-211 | 19 | 46746059 | 46755655 | + | mRNA | protein_coding |
| 95565 | enst00000597403 | sg00000181027 | fkrp-215 | 19 | 46746061 | 46748641 | + | lnc_RNA | processed_transcript |
| 95909 | enst00000594704 | sg00000090372 | strn4-209 | 19 | 46730733 | 46746405 | - | mRNA | nonsense_mediated_decay |
| 95954 | enst00000263280 | sg00000090372 | strn4-201 | 19 | 46719511 | 46746450 | - | mRNA | protein_coding |
| 96367 | enst00000435164 | sg00000090372 | strn4-203 | 19 | 46725333 | 46746863 | - | mRNA | nonsense_mediated_decay |
| 96385 | enst00000391910 | sg00000090372 | strn4-202 | 19 | 46719511 | 46746881 | - | mRNA | protein_coding |
| 96414 | enst00000600834 | sg00000181027 | fkrp-222 | 19 | 46746910 | 46755666 | + | mRNA | protein_coding |
| 96448 | enst00000600710 | sg00000090372 | strn4-220 | 19 | 46736205 | 46746944 | - | lnc_RNA | processed_transcript |
| 96449 | enst00000596012 | sg00000090372 | strn4-212 | 19 | 46733200 | 46746945 | - | mRNA | protein_coding |
| 96449 | enst00000593979 | sg00000090372 | strn4-205 | 19 | 46730836 | 46746945 | - | mRNA | protein_coding |
| 96498 | enst00000539396 | sg00000090372 | strn4-204 | 19 | 46720071 | 46746994 | - | mRNA | protein_coding |
| 97163 | enst00000593877 | sg00000181027 | fkrp-205 | 19 | 46747659 | 46755463 | + | mRNA | protein_coding |
| 98262 | enst00000593902 | sg00000181027 | fkrp-206 | 19 | 46748758 | 46755861 | + | mRNA | protein_coding |
| -114708 | enst00000614101 | sg00000278797 | ac011551.1-201 | 19 | 46533669 | 46534351 | + | pseudogenic_transcript | unprocessed_pseudogene |
| 134290 | enst00000593713 | sg00000105281 | slc1a5-204 | 19 | 46777211 | 46784786 | - | mRNA | protein_coding |
| 134307 | enst00000598022 | sg00000105281 | slc1a5-206 | 19 | 46782436 | 46784803 | - | mRNA | protein_coding |
| 134328 | enst00000434726 | sg00000105281 | slc1a5-202 | 19 | 46774885 | 46784824 | - | mRNA | protein_coding |
| 134409 | enst00000594991 | sg00000105281 | slc1a5-205 | 19 | 46774885 | 46784905 | - | mRNA | protein_coding |
| 136846 | enst00000412532 | sg00000105281 | slc1a5-201 | 19 | 46774924 | 46787342 | - | mRNA | protein_coding |
| 137319 | enst00000612522 | sg00000275719 | ac008622.2-202 | 19 | 46787815 | 46789039 | + | lnc_RNA | lncrna |
| 137319 | enst00000617006 | sg00000275719 | ac008622.2-201 | 19 | 46787815 | 46789043 | + | lnc_RNA | lncrna |
| 138098 | enst00000542575 | sg00000105281 | slc1a5-203 | 19 | 46774883 | 46788594 | - | mRNA | protein_coding |
| -152498 | enst00000594749 | sg00000204851 | pnma8b-201 | 19 | 46486906 | 46495879 | - | lnc_RNA | processed_transcript |
| -152510 | enst00000599531 | sg00000204851 | pnma8b-202 | 19 | 46491191 | 46495867 | - | mRNA | protein_coding |
| -153869 | enst00000377652 | sg00000204850 | ac011484.1-201 | 19 | 46494508 | 46496502 | + | lnc_RNA | lncrna |
| -158257 | enst00000595691 | sg00000230510 | ppp5d1-204 | 19 | 46481085 | 46490120 | - | lnc_RNA | processed_transcript |
| 159087 | enst00000621170 | sg00000275862 | ac008622.3-201 | 19 | 46809583 | 46810182 | + | pseudogenic_transcript | processed_pseudogene |
| 159089 | enst00000596369 | sg00000269576 | hnrnpmp2-201 | 19 | 46809585 | 46810183 | + | pseudogenic_transcript | processed_pseudogene |
| -176814 | enst00000313683 | sg00000182013 | pnma8a-201 | 19 | 46466503 | 46471563 | - | mRNA | protein_coding |
| -176814 | enst00000602246 | sg00000182013 | pnma8a-203 | 19 | 46468528 | 46471563 | - | mRNA | protein_coding |
| -176970 | enst00000438932 | sg00000182013 | pnma8a-202 | 19 | 46466491 | 46471407 | - | mRNA | protein_coding |
| 177944 | enst00000597106 | sg00000269014 | ac008622.1-201 | 19 | 46826895 | 46828440 | - | pseudogenic_transcript | processed_pseudogene |
| 188324 | enst00000600964 | sg00000042753 | ap2s1-208 | 19 | 46838172 | 46838820 | - | lnc_RNA | retained_intron |
| 189160 | enst00000598027 | sg00000042753 | ap2s1-206 | 19 | 46838446 | 46839656 | - | lnc_RNA | retained_intron |
| 195652 | enst00000597020 | sg00000042753 | ap2s1-204 | 19 | 46838172 | 46846148 | - | mRNA | protein_coding |
| 199820 | enst00000601498 | sg00000042753 | ap2s1-209 | 19 | 46838158 | 46850316 | - | mRNA | protein_coding |
| 200270 | enst00000601649 | sg00000042753 | ap2s1-210 | 19 | 46838447 | 46850766 | - | mRNA | protein_coding |
| 200273 | enst00000599990 | sg00000042753 | ap2s1-207 | 19 | 46838158 | 46850769 | - | mRNA | protein_coding |
| 200281 | enst00000352203 | sg00000042753 | ap2s1-202 | 19 | 46838136 | 46850777 | - | mRNA | protein_coding |
| 200329 | enst00000597421 | sg00000042753 | ap2s1-205 | 19 | 46845651 | 46850825 | - | lnc_RNA | retained_intron |
| 200338 | enst00000593442 | sg00000042753 | ap2s1-203 | 19 | 46838158 | 46850834 | - | mRNA | protein_coding |
| 200496 | enst00000263270 | sg00000042753 | ap2s1-201 | 19 | 46838167 | 46850992 | - | mRNA | protein_coding |
| 210501 | enst00000672722 | sg00000160007 | arhgap35-207 | 19 | 46860997 | 47005077 | + | mRNA | protein_coding |
| -219426 | enst00000617053 | sg00000277531 | pnma8c-201 | 19 | 46424697 | 46428951 | - | mRNA | protein_coding |
| -234813 | enst00000307522 | sg00000169515 | ccdc8-201 | 19 | 46410329 | 46413564 | - | mRNA | protein_coding |
| -257525 | enst00000598616 | sg00000269151 | ac007193.3-201 | 19 | 46390515 | 46390852 | - | lnc_RNA | lncrna |
| -260451 | enst00000527623 | sg00000011485 | ppp5c-213 | 19 | 46387926 | 46390610 | + | lnc_RNA | retained_intron |
| -261659 | enst00000525507 | sg00000011485 | ppp5c-211 | 19 | 46386718 | 46390675 | + | lnc_RNA | retained_intron |
| -264000 | enst00000492109 | sg00000011485 | ppp5c-209 | 19 | 46384377 | 46388595 | + | lnc_RNA | retained_intron |
| -264583 | enst00000491003 | sg00000011485 | ppp5c-208 | 19 | 46383794 | 46390286 | + | lnc_RNA | retained_intron |
| -264914 | enst00000595055 | sg00000011485 | ppp5c-215 | 19 | 46383463 | 46384943 | + | lnc_RNA | retained_intron |
| -265054 | enst00000493347 | sg00000011485 | ppp5c-210 | 19 | 46383323 | 46387164 | + | lnc_RNA | retained_intron |
| -265208 | enst00000599645 | sg00000268810 | ac007193.1-201 | 19 | 46382492 | 46383169 | - | lnc_RNA | lncrna |
| -265221 | enst00000467502 | sg00000011485 | ppp5c-203 | 19 | 46383156 | 46387935 | + | lnc_RNA | retained_intron |
| -265605 | enst00000486994 | sg00000011485 | ppp5c-206 | 19 | 46382772 | 46390746 | + | lnc_RNA | retained_intron |
| -266651 | enst00000532058 | sg00000011485 | ppp5c-214 | 19 | 46381726 | 46383998 | + | lnc_RNA | retained_intron |
| -266866 | enst00000487483 | sg00000011485 | ppp5c-207 | 19 | 46381511 | 46390846 | + | lnc_RNA | retained_intron |
| 268180 | enst00000614079 | sg00000160007 | arhgap35-206 | 19 | 46918676 | 47004307 | + | mRNA | protein_coding |
| 268180 | enst00000404338 | sg00000160007 | arhgap35-201 | 19 | 46918676 | 47005066 | + | mRNA | protein_coding |
| -272750 | enst00000527193 | sg00000011485 | ppp5c-212 | 19 | 46375627 | 46383711 | + | lnc_RNA | retained_intron |
| -272773 | enst00000467902 | sg00000011485 | ppp5c-204 | 19 | 46375604 | 46376703 | + | lnc_RNA | retained_intron |
| 286824 | enst00000595822 | sg00000160007 | arhgap35-202 | 19 | 46937320 | 47001425 | + | lnc_RNA | retained_intron |
| 296039 | enst00000624074 | sg00000279948 | ac008895.1-201 | 19 | 46946535 | 46949156 | + | unconfirmed_transcript | tec |
| -301269 | enst00000391919 | sg00000011485 | ppp5c-202 | 19 | 46347108 | 46390852 | + | mRNA | protein_coding |
| -301276 | enst00000478046 | sg00000011485 | ppp5c-205 | 19 | 46347101 | 46392981 | + | mRNA | nonsense_mediated_decay |
| -301290 | enst00000012443 | sg00000011485 | ppp5c-201 | 19 | 46347087 | 46390975 | + | mRNA | protein_coding |
| -308373 | enst00000596807 | sg00000269124 | ac007193.2-201 | 19 | 46320197 | 46340004 | - | lnc_RNA | lncrna |
| -326597 | enst00000529542 | sg00000124440 | hif3a-213 | 19 | 46321780 | 46331496 | + | lnc_RNA | retained_intron |
| -327985 | enst00000600236 | sg00000124440 | hif3a-217 | 19 | 46320392 | 46321918 | + | lnc_RNA | retained_intron |
| 339088 | enst00000596593 | sg00000160007 | arhgap35-203 | 19 | 46989584 | 46997750 | + | lnc_RNA | processed_transcript |
| -339156 | enst00000531043 | sg00000124440 | hif3a-214 | 19 | 46309221 | 46312653 | + | mRNA | nonsense_mediated_decay |
| -341800 | enst00000362926 | sg00000199796 | rnu6-924p-201 | 19 | 46306470 | 46306577 | - | snRNA | snrna |
| -343291 | enst00000529205 | sg00000124440 | hif3a-212 | 19 | 46305086 | 46309196 | + | lnc_RNA | retained_intron |
| -343335 | enst00000525854 | sg00000124440 | hif3a-209 | 19 | 46305042 | 46312518 | + | lnc_RNA | processed_transcript |
| -344528 | enst00000600879 | sg00000124440 | hif3a-219 | 19 | 46303849 | 46308767 | + | mRNA | nonsense_mediated_decay |
| -344528 | enst00000600383 | sg00000124440 | hif3a-218 | 19 | 46303849 | 46338538 | + | mRNA | protein_coding |
| -344778 | enst00000300862 | sg00000124440 | hif3a-204 | 19 | 46303599 | 46340100 | + | mRNA | protein_coding |
| 348589 | enst00000598548 | sg00000160007 | arhgap35-204 | 19 | 46999085 | 46999815 | + | lnc_RNA | processed_transcript |
| 348602 | enst00000599284 | sg00000160007 | arhgap35-205 | 19 | 46999098 | 47000949 | + | lnc_RNA | retained_intron |
| -349919 | enst00000291300 | sg00000124440 | hif3a-203 | 19 | 46298458 | 46331513 | + | lnc_RNA | retained_intron |
| -349944 | enst00000526506 | sg00000124440 | hif3a-210 | 19 | 46298433 | 46308586 | + | mRNA | nonsense_mediated_decay |
| -349951 | enst00000472815 | sg00000124440 | hif3a-206 | 19 | 46298426 | 46338538 | + | mRNA | protein_coding |
| -349955 | enst00000533145 | sg00000124440 | hif3a-215 | 19 | 46298422 | 46308683 | + | mRNA | protein_coding |
| -349983 | enst00000528563 | sg00000124440 | hif3a-211 | 19 | 46298394 | 46325594 | + | mRNA | nonsense_mediated_decay |
| -349987 | enst00000244303 | sg00000124440 | hif3a-202 | 19 | 46298390 | 46339909 | + | mRNA | protein_coding |
| -350079 | enst00000524533 | sg00000124440 | hif3a-208 | 19 | 46298298 | 46304187 | + | lnc_RNA | retained_intron |
| -351331 | enst00000533789 | sg00000124440 | hif3a-216 | 19 | 46297046 | 46309266 | + | mRNA | nonsense_mediated_decay |
| -351331 | enst00000377670 | sg00000124440 | hif3a-205 | 19 | 46297046 | 46343433 | + | mRNA | protein_coding |
| -351331 | enst00000244302 | sg00000124440 | hif3a-201 | 19 | 46297046 | 46331513 | + | lnc_RNA | retained_intron |
| -351331 | enst00000475432 | sg00000124440 | hif3a-207 | 19 | 46297046 | 46313363 | + | lnc_RNA | retained_intron |
| 369341 | enst00000602212 | sg00000130751 | npas1-208 | 19 | 47019837 | 47045775 | + | mRNA | protein_coding |
| 369353 | enst00000602189 | sg00000130751 | npas1-207 | 19 | 47019849 | 47045727 | + | mRNA | protein_coding |
| 370390 | enst00000449844 | sg00000130751 | npas1-202 | 19 | 47020886 | 47045759 | + | mRNA | protein_coding |
| 384833 | enst00000439365 | sg00000130751 | npas1-201 | 19 | 47035329 | 47045758 | + | mRNA | protein_coding |
| 384836 | enst00000601169 | sg00000130751 | npas1-206 | 19 | 47035332 | 47040758 | + | lnc_RNA | retained_intron |
| 384852 | enst00000594670 | sg00000130751 | npas1-204 | 19 | 47035348 | 47041125 | + | mRNA | protein_coding |
| 384854 | enst00000594257 | sg00000130751 | npas1-203 | 19 | 47035350 | 47042877 | + | mRNA | nonsense_mediated_decay |
| 385393 | enst00000600352 | sg00000130751 | npas1-205 | 19 | 47035889 | 47040733 | + | lnc_RNA | retained_intron |
| -387519 | enst00000593820 | sg00000268238 | igfl1p2-201 | 19 | 46260420 | 46260858 | - | pseudogenic_transcript | unprocessed_pseudogene |
| 398128 | enst00000253047 | sg00000130748 | tmem160-201 | 19 | 47045909 | 47048624 | - | mRNA | protein_coding |
| -398214 | enst00000613498 | sg00000277748 | ac006262.4-201 | 19 | 46249394 | 46250163 | - | pseudogenic_transcript | unprocessed_pseudogene |
| -417989 | enst00000597337 | sg00000269745 | ac006262.3-201 | 19 | 46228964 | 46230388 | - | lnc_RNA | lncrna |
| -418635 | enst00000437936 | sg00000188293 | igfl1-201 | 19 | 46229742 | 46231243 | + | mRNA | protein_coding |
| -428954 | enst00000599500 | sg00000269637 | rpl12p41-201 | 19 | 46219423 | 46219920 | + | pseudogenic_transcript | processed_pseudogene |
| 434859 | enst00000601973 | sg00000130749 | zc3h4-205 | 19 | 47064192 | 47085355 | - | mRNA | protein_coding |
| -438135 | enst00000598170 | sg00000268460 | ac006262.1-203 | 19 | 46210242 | 46214837 | + | lnc_RNA | lncrna |
| -441634 | enst00000596066 | sg00000268460 | ac006262.1-202 | 19 | 46206743 | 46210088 | + | lnc_RNA | retained_intron |
| 443991 | enst00000595341 | sg00000130749 | zc3h4-203 | 19 | 47093749 | 47094487 | - | lnc_RNA | retained_intron |
| -444951 | enst00000593980 | sg00000268460 | ac006262.1-201 | 19 | 46203426 | 46212575 | + | lnc_RNA | lncrna |
| -445217 | enst00000670157 | sg00000268621 | igfl2-as1-214 | 19 | 46194853 | 46203160 | - | lnc_RNA | lncrna |
| -445260 | enst00000663652 | sg00000268621 | igfl2-as1-208 | 19 | 46198060 | 46203117 | - | lnc_RNA | lncrna |
| -445294 | enst00000599817 | sg00000268621 | igfl2-as1-205 | 19 | 46195571 | 46203083 | - | lnc_RNA | lncrna |
| -445294 | enst00000668528 | sg00000268621 | igfl2-as1-212 | 19 | 46189842 | 46203083 | - | lnc_RNA | lncrna |
| -445294 | enst00000595673 | sg00000268621 | igfl2-as1-202 | 19 | 46200787 | 46203083 | - | lnc_RNA | lncrna |
| -445294 | enst00000667831 | sg00000268621 | igfl2-as1-211 | 19 | 46189029 | 46203083 | - | lnc_RNA | lncrna |
| -445294 | enst00000666136 | sg00000268621 | igfl2-as1-210 | 19 | 46189029 | 46203083 | - | lnc_RNA | lncrna |
| -445294 | enst00000664765 | sg00000268621 | igfl2-as1-209 | 19 | 46189029 | 46203083 | - | lnc_RNA | lncrna |
| -445294 | enst00000663593 | sg00000268621 | igfl2-as1-207 | 19 | 46189029 | 46203083 | - | lnc_RNA | lncrna |
| -445294 | enst00000594027 | sg00000268621 | igfl2-as1-201 | 19 | 46189029 | 46203083 | - | lnc_RNA | lncrna |
| -445294 | enst00000598518 | sg00000268621 | igfl2-as1-203 | 19 | 46189383 | 46203083 | - | lnc_RNA | lncrna |
| -445294 | enst00000669846 | sg00000268621 | igfl2-as1-213 | 19 | 46189029 | 46203083 | - | lnc_RNA | lncrna |
| -445411 | enst00000598754 | sg00000268621 | igfl2-as1-204 | 19 | 46198100 | 46202966 | - | lnc_RNA | lncrna |
| -445448 | enst00000601263 | sg00000268621 | igfl2-as1-206 | 19 | 46198287 | 46202929 | - | lnc_RNA | lncrna |
| -446414 | enst00000656560 | sg00000268460 | ac006262.1-205 | 19 | 46201963 | 46214838 | + | lnc_RNA | lncrna |
| -446797 | enst00000666402 | sg00000268460 | ac006262.1-206 | 19 | 46201580 | 46214838 | + | lnc_RNA | lncrna |
| -446825 | enst00000656054 | sg00000268460 | ac006262.1-204 | 19 | 46201552 | 46206758 | + | lnc_RNA | lncrna |
| -452139 | enst00000599950 | sg00000268879 | igfl1p1-201 | 19 | 46196238 | 46197323 | + | pseudogenic_transcript | unprocessed_pseudogene |
| 461733 | enst00000594019 | sg00000130749 | zc3h4-202 | 19 | 47064859 | 47112229 | - | lnc_RNA | processed_transcript |
| 461751 | enst00000597069 | sg00000130749 | zc3h4-204 | 19 | 47090019 | 47112247 | - | lnc_RNA | processed_transcript |
| 462778 | enst00000594144 | sg00000142230 | sae1-205 | 19 | 47113274 | 47169853 | + | mRNA | protein_coding |
| 462945 | enst00000594526 | sg00000142230 | sae1-206 | 19 | 47113441 | 47153000 | + | mRNA | protein_coding |
| 463280 | enst00000253048 | sg00000130749 | zc3h4-201 | 19 | 47064187 | 47113776 | - | mRNA | protein_coding |
| -467730 | enst00000599127 | sg00000269729 | ac006262.2-201 | 19 | 46163893 | 46180647 | - | lnc_RNA | lncrna |
| -474348 | enst00000600152 | sg00000269729 | ac006262.2-202 | 19 | 46173535 | 46174029 | - | lnc_RNA | lncrna |
| 480286 | enst00000597808 | sg00000142230 | sae1-208 | 19 | 47130782 | 47155177 | + | mRNA | protein_coding |
| 480333 | enst00000413379 | sg00000142230 | sae1-203 | 19 | 47130829 | 47210636 | + | mRNA | protein_coding |
| 480334 | enst00000600706 | sg00000142230 | sae1-210 | 19 | 47130830 | 47169902 | + | mRNA | protein_coding |
| 480339 | enst00000270225 | sg00000142230 | sae1-201 | 19 | 47130835 | 47210636 | + | mRNA | protein_coding |
| 480342 | enst00000598840 | sg00000142230 | sae1-209 | 19 | 47130838 | 47210191 | + | mRNA | protein_coding |
| 480363 | enst00000414294 | sg00000142230 | sae1-204 | 19 | 47130859 | 47210191 | + | mRNA | nonsense_mediated_decay |
| 480365 | enst00000600753 | sg00000142230 | sae1-211 | 19 | 47130861 | 47153038 | + | mRNA | protein_coding |
| 480370 | enst00000660039 | sg00000142230 | sae1-213 | 19 | 47130866 | 47210623 | + | mRNA | nonsense_mediated_decay |
| 480393 | enst00000664120 | sg00000142230 | sae1-214 | 19 | 47130889 | 47210623 | + | mRNA | nonsense_mediated_decay |
| 480393 | enst00000596995 | sg00000142230 | sae1-207 | 19 | 47130889 | 47210190 | + | mRNA | nonsense_mediated_decay |
| 480399 | enst00000392776 | sg00000142230 | sae1-202 | 19 | 47130895 | 47210170 | + | mRNA | protein_coding |
| -487734 | enst00000601052 | sg00000204866 | igfl2-205 | 19 | 46160643 | 46161288 | + | mRNA | protein_coding |
| -489331 | enst00000593592 | sg00000204866 | igfl2-203 | 19 | 46159046 | 46161298 | + | lnc_RNA | retained_intron |
| 492998 | enst00000659110 | sg00000142230 | sae1-212 | 19 | 47143494 | 47210623 | + | mRNA | nonsense_mediated_decay |
Source file: /hps/research1/birney/users/adrien/analyses/cancer_DNA_promethion/run_1_2_3_4/DNA_pipeline_2/results/methylation/pycometh_meth_comp_CGI_3/out.tsv.gz
MD5 hash: 9aa0e3f69cb4e12345c3758eb68a5efc