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CpG interval report generated on 20/05/20 with pycoMeth 0.4.6
Interval details
| pvalue rank | chromosome | start | end | length | number of samples | number of CpGs | pvalue | adjusted pvalue |
|---|---|---|---|---|---|---|---|---|
| #99 | 8 | 9898069 | 9899160 | 1091 | 3 | 36 | 1.351e-17 | 1.35714e-15 |
Methylation log-likelihood ratio by CpG position
Distribution of CpG methylation log-likelihood ratio by sample
Closest transcripts TSS
| distance to tss | transcript id | gene id | transcript name | chromosome | start | end | strand | feature type | transcript biotype |
|---|---|---|---|---|---|---|---|---|---|
| 2040 | enst00000518557 | sg00000253230 | linc00599-202 | 8 | 9900064 | 9901200 | - | lnc_RNA | lncrna |
| 2653 | enst00000662006 | sg00000253230 | linc00599-210 | 8 | 9900064 | 9901813 | - | lnc_RNA | lncrna |
| 2777 | enst00000666267 | sg00000253230 | linc00599-212 | 8 | 9900058 | 9901937 | - | lnc_RNA | lncrna |
| 4237 | enst00000517675 | sg00000253230 | linc00599-201 | 8 | 9900064 | 9903397 | - | lnc_RNA | lncrna |
| 4238 | enst00000669913 | sg00000253230 | linc00599-215 | 8 | 9900077 | 9903398 | - | lnc_RNA | lncrna |
| 4238 | enst00000654192 | sg00000253230 | linc00599-207 | 8 | 9900071 | 9903398 | - | lnc_RNA | lncrna |
| 4238 | enst00000665174 | sg00000253230 | linc00599-211 | 8 | 9900064 | 9903398 | - | lnc_RNA | lncrna |
| 4238 | enst00000653424 | sg00000253230 | linc00599-206 | 8 | 9900064 | 9903398 | - | lnc_RNA | lncrna |
| 4238 | enst00000519461 | sg00000253230 | linc00599-203 | 8 | 9900064 | 9903398 | - | lnc_RNA | lncrna |
| 4238 | enst00000667273 | sg00000253230 | linc00599-214 | 8 | 9899871 | 9903398 | - | lnc_RNA | lncrna |
| 4238 | enst00000667251 | sg00000253230 | linc00599-213 | 8 | 9899944 | 9903398 | - | lnc_RNA | lncrna |
| 4312 | enst00000385275 | sg00000284321 | mir124-1-201 | 8 | 9903388 | 9903472 | - | miRNA | mirna |
| 5050 | enst00000521863 | sg00000253230 | linc00599-205 | 8 | 9903167 | 9904210 | - | lnc_RNA | lncrna |
| 6098 | enst00000656078 | sg00000253230 | linc00599-208 | 8 | 9900064 | 9905258 | - | lnc_RNA | lncrna |
| 6206 | enst00000521242 | sg00000253230 | linc00599-204 | 8 | 9903461 | 9905366 | - | lnc_RNA | lncrna |
| 7518 | enst00000661494 | sg00000253230 | linc00599-209 | 8 | 9904893 | 9906678 | - | lnc_RNA | lncrna |
| -127938 | enst00000517770 | sg00000173273 | tnks-203 | 8 | 9770131 | 9777036 | + | mRNA | protein_coding |
| 155094 | enst00000562143 | sg00000260093 | ac034111.1-201 | 8 | 10050485 | 10054254 | - | lnc_RNA | lncrna |
| 155132 | enst00000317173 | sg00000175806 | msra-201 | 8 | 10054292 | 10428891 | + | mRNA | protein_coding |
| 155210 | enst00000441698 | sg00000175806 | msra-203 | 8 | 10054370 | 10428365 | + | mRNA | protein_coding |
| 155341 | enst00000518255 | sg00000175806 | msra-205 | 8 | 10054501 | 10337823 | + | mRNA | protein_coding |
| 155881 | enst00000659604 | sg00000286622 | ac034111.2-201 | 8 | 9984004 | 10055041 | - | lnc_RNA | lncrna |
| -156397 | enst00000384968 | sg00000207701 | mir597-201 | 8 | 9741672 | 9741768 | + | miRNA | mirna |
| -157155 | enst00000519191 | sg00000173273 | tnks-208 | 8 | 9740914 | 9751713 | + | lnc_RNA | processed_transcript |
| 159810 | enst00000521209 | sg00000175806 | msra-206 | 8 | 10058970 | 10250917 | + | mRNA | protein_coding |
| -163078 | enst00000518635 | sg00000173273 | tnks-207 | 8 | 9734991 | 9748213 | + | mRNA | nonsense_mediated_decay |
| -177613 | enst00000519930 | sg00000173273 | tnks-210 | 8 | 9720456 | 9730973 | + | lnc_RNA | processed_transcript |
| 196391 | enst00000522907 | sg00000175806 | msra-208 | 8 | 10095551 | 10319891 | + | mRNA | protein_coding |
| 196392 | enst00000528246 | sg00000175806 | msra-210 | 8 | 10095552 | 10428885 | + | mRNA | protein_coding |
| 196567 | enst00000382490 | sg00000175806 | msra-202 | 8 | 10095727 | 10428889 | + | mRNA | protein_coding |
| 196567 | enst00000523637 | sg00000175806 | msra-209 | 8 | 10095727 | 10320363 | + | lnc_RNA | retained_intron |
| -218223 | enst00000517989 | sg00000173273 | tnks-204 | 8 | 9679846 | 9708406 | + | lnc_RNA | retained_intron |
| -218315 | enst00000519392 | sg00000173273 | tnks-209 | 8 | 9679754 | 9707008 | + | lnc_RNA | processed_transcript |
| -227950 | enst00000521039 | sg00000173273 | tnks-212 | 8 | 9670119 | 9681156 | + | lnc_RNA | retained_intron |
| -239631 | enst00000520383 | sg00000253697 | ac103834.1-201 | 8 | 9658295 | 9658438 | - | pseudogenic_transcript | unprocessed_pseudogene |
| 248263 | enst00000649481 | sg00000285675 | ac023385.1-201 | 8 | 10118005 | 10147423 | - | lnc_RNA | lncrna |
| -282779 | enst00000518027 | sg00000173273 | tnks-205 | 8 | 9615290 | 9707008 | + | lnc_RNA | processed_transcript |
| -323062 | enst00000518281 | sg00000173273 | tnks-206 | 8 | 9575007 | 9776929 | + | mRNA | protein_coding |
| -331809 | enst00000517652 | sg00000173273 | tnks-202 | 8 | 9566260 | 9566526 | + | lnc_RNA | processed_transcript |
| -341549 | enst00000607598 | sg00000272267 | ac021242.3-201 | 8 | 9555144 | 9556520 | - | lnc_RNA | lncrna |
| -342137 | enst00000522110 | sg00000173273 | tnks-213 | 8 | 9555932 | 9558831 | + | mRNA | protein_coding |
| -342155 | enst00000520408 | sg00000173273 | tnks-211 | 8 | 9555914 | 9710409 | + | mRNA | protein_coding |
| -342157 | enst00000310430 | sg00000173273 | tnks-201 | 8 | 9555912 | 9782346 | + | mRNA | protein_coding |
| 380577 | enst00000648351 | sg00000285606 | ac079200.1-201 | 8 | 10275499 | 10279737 | - | lnc_RNA | lncrna |
| 402375 | enst00000521686 | sg00000175806 | msra-207 | 8 | 10301535 | 10353963 | + | mRNA | protein_coding |
| 427308 | enst00000517594 | sg00000175806 | msra-204 | 8 | 10326468 | 10411565 | + | lnc_RNA | processed_transcript |
| 438517 | enst00000513168 | sg00000249848 | ac112673.1-201 | 8 | 10336782 | 10337677 | - | pseudogenic_transcript | processed_pseudogene |
| -444371 | enst00000507315 | sg00000249050 | ac021242.1-201 | 8 | 9453698 | 9457418 | + | pseudogenic_transcript | processed_pseudogene |
| -461864 | enst00000522129 | sg00000254237 | ac021242.2-202 | 8 | 9374898 | 9436205 | - | lnc_RNA | lncrna |
| -482086 | enst00000521842 | sg00000254237 | ac021242.2-203 | 8 | 9379975 | 9415983 | - | lnc_RNA | lncrna |
| -493763 | enst00000647946 | sg00000248538 | ac022784.1-268 | 8 | 9404306 | 9413869 | + | lnc_RNA | lncrna |
| -495107 | enst00000649974 | sg00000248538 | ac022784.1-267 | 8 | 9402962 | 9413878 | + | lnc_RNA | lncrna |
Source file: /hps/research1/birney/users/adrien/analyses/cancer_DNA_promethion/run_1_2_3_4/DNA_pipeline_2/results/methylation/pycometh_meth_comp_CGI_3/out.tsv.gz
MD5 hash: 9aa0e3f69cb4e12345c3758eb68a5efc