PycoMeth
Documentation
GitHub
CpG interval report generated on 20/05/20 with pycoMeth 0.4.6
Interval details
| pvalue rank | chromosome | start | end | length | number of samples | number of CpGs | pvalue | adjusted pvalue |
|---|---|---|---|---|---|---|---|---|
| #94 | 17 | 45240959 | 45242226 | 1267 | 3 | 40 | 5.78431e-18 | 6.11968e-16 |
Methylation log-likelihood ratio by CpG position
Distribution of CpG methylation log-likelihood ratio by sample
Closest transcripts TSS
| distance to tss | transcript id | gene id | transcript name | chromosome | start | end | strand | feature type | transcript biotype |
|---|---|---|---|---|---|---|---|---|---|
| 0 | enst00000587534 | sg00000233175 | ac008105.1-201 | 17 | 45238028 | 45241734 | - | lnc_RNA | lncrna |
| 0 | enst00000587489 | sg00000184922 | fmnl1-206 | 17 | 45241075 | 45247318 | + | mRNA | protein_coding |
| 0 | enst00000393507 | sg00000233175 | ac008105.1-202 | 17 | 45240315 | 45241197 | - | lnc_RNA | lncrna |
| 892 | enst00000586643 | sg00000184922 | fmnl1-205 | 17 | 45243118 | 45246604 | + | mRNA | protein_coding |
| 3098 | enst00000589911 | sg00000184922 | fmnl1-208 | 17 | 45245324 | 45246553 | + | mRNA | protein_coding |
| 3100 | enst00000586092 | sg00000184922 | fmnl1-204 | 17 | 45245326 | 45246475 | + | mRNA | protein_coding |
| 5617 | enst00000589518 | sg00000233483 | ac008105.2-202 | 17 | 45247267 | 45247843 | - | lnc_RNA | processed_transcript |
| 5690 | enst00000657572 | sg00000267278 | map3k14-as1-212 | 17 | 45247916 | 45269814 | + | lnc_RNA | lncrna |
| 5699 | enst00000591263 | sg00000267278 | map3k14-as1-209 | 17 | 45247925 | 45267490 | + | lnc_RNA | lncrna |
| 5709 | enst00000655903 | sg00000267278 | map3k14-as1-211 | 17 | 45247935 | 45269814 | + | lnc_RNA | lncrna |
| 5710 | enst00000588504 | sg00000267278 | map3k14-as1-206 | 17 | 45247936 | 45267588 | + | lnc_RNA | lncrna |
| 5710 | enst00000590100 | sg00000267278 | map3k14-as1-208 | 17 | 45247936 | 45269814 | + | lnc_RNA | lncrna |
| 5728 | enst00000585346 | sg00000267278 | map3k14-as1-201 | 17 | 45247954 | 45267466 | + | lnc_RNA | lncrna |
| 5728 | enst00000592422 | sg00000267278 | map3k14-as1-210 | 17 | 45247954 | 45268393 | + | lnc_RNA | lncrna |
| 6113 | enst00000420431 | sg00000233483 | ac008105.2-201 | 17 | 45245186 | 45248339 | - | lnc_RNA | processed_transcript |
| 6610 | enst00000591361 | sg00000233483 | ac008105.2-204 | 17 | 45247551 | 45248836 | - | lnc_RNA | processed_transcript |
| -6879 | enst00000591434 | sg00000184922 | fmnl1-209 | 17 | 45234080 | 45236594 | + | lnc_RNA | retained_intron |
| -7075 | enst00000587856 | sg00000184922 | fmnl1-207 | 17 | 45233884 | 45247319 | + | lnc_RNA | retained_intron |
| 7131 | enst00000645108 | sg00000233483 | ac008105.2-205 | 17 | 45248251 | 45249357 | - | lnc_RNA | processed_transcript |
| -8097 | enst00000592527 | sg00000184922 | fmnl1-212 | 17 | 45232862 | 45233953 | + | lnc_RNA | retained_intron |
| 8903 | enst00000642422 | sg00000233483 | ac008105.2-203 | 17 | 45247381 | 45251129 | - | pseudogenic_transcript | transcribed_unitary_pseudogene |
| -9532 | enst00000592006 | sg00000184922 | fmnl1-210 | 17 | 45231427 | 45239054 | + | lnc_RNA | processed_transcript |
| -10290 | enst00000585852 | sg00000184922 | fmnl1-203 | 17 | 45230669 | 45234687 | + | lnc_RNA | retained_intron |
| 12786 | enst00000588698 | sg00000267278 | map3k14-as1-207 | 17 | 45255012 | 45268263 | + | lnc_RNA | lncrna |
| 12798 | enst00000588160 | sg00000267278 | map3k14-as1-205 | 17 | 45255024 | 45267490 | + | lnc_RNA | lncrna |
| -18737 | enst00000591365 | sg00000267121 | ac008105.3-203 | 17 | 45219350 | 45222222 | - | lnc_RNA | lncrna |
| -18882 | enst00000328118 | sg00000184922 | fmnl1-201 | 17 | 45222077 | 45246959 | + | mRNA | protein_coding |
| -19074 | enst00000331495 | sg00000184922 | fmnl1-202 | 17 | 45221885 | 45247318 | + | mRNA | protein_coding |
| -19194 | enst00000590495 | sg00000267121 | ac008105.3-205 | 17 | 45220267 | 45221765 | - | lnc_RNA | lncrna |
| -19194 | enst00000586376 | sg00000267121 | ac008105.3-201 | 17 | 45190931 | 45221765 | - | lnc_RNA | lncrna |
| -19515 | enst00000592415 | sg00000184922 | fmnl1-211 | 17 | 45221444 | 45222097 | + | lnc_RNA | processed_transcript |
| 19551 | enst00000585780 | sg00000267278 | map3k14-as1-203 | 17 | 45261777 | 45268059 | + | lnc_RNA | lncrna |
| -19668 | enst00000670229 | sg00000267121 | ac008105.3-206 | 17 | 45218692 | 45221291 | - | lnc_RNA | lncrna |
| 19854 | enst00000586450 | sg00000267278 | map3k14-as1-204 | 17 | 45262080 | 45269824 | + | lnc_RNA | lncrna |
| 19864 | enst00000588866 | sg00000184361 | spata32-203 | 17 | 45254393 | 45262090 | - | mRNA | nonsense_mediated_decay |
| 19868 | enst00000586359 | sg00000184361 | spata32-202 | 17 | 45254393 | 45262094 | - | mRNA | nonsense_mediated_decay |
| 19868 | enst00000331780 | sg00000184361 | spata32-201 | 17 | 45254393 | 45262094 | - | mRNA | protein_coding |
| 19965 | enst00000585351 | sg00000267278 | map3k14-as1-202 | 17 | 45262191 | 45268263 | + | lnc_RNA | lncrna |
| 19978 | enst00000663374 | sg00000267278 | map3k14-as1-213 | 17 | 45262204 | 45268259 | + | lnc_RNA | lncrna |
| -20534 | enst00000585471 | sg00000267121 | ac008105.3-202 | 17 | 45218256 | 45220425 | - | lnc_RNA | lncrna |
| -20627 | enst00000590522 | sg00000267121 | ac008105.3-204 | 17 | 45219735 | 45220332 | - | lnc_RNA | lncrna |
| 31376 | enst00000586644 | sg00000006062 | map3k14-203 | 17 | 45263151 | 45273602 | - | lnc_RNA | retained_intron |
| 31740 | enst00000592267 | sg00000006062 | map3k14-204 | 17 | 45263135 | 45273966 | - | lnc_RNA | retained_intron |
| 48750 | enst00000376926 | sg00000006062 | map3k14-202 | 17 | 45263128 | 45290976 | - | mRNA | protein_coding |
| -69375 | enst00000589451 | sg00000267288 | ac138150.2-202 | 17 | 45170682 | 45171584 | - | lnc_RNA | lncrna |
| -69474 | enst00000589796 | sg00000267288 | ac138150.2-201 | 17 | 45168800 | 45171485 | - | lnc_RNA | lncrna |
| 74794 | enst00000344686 | sg00000006062 | map3k14-201 | 17 | 45263119 | 45317020 | - | mRNA | protein_coding |
| 74803 | enst00000617331 | sg00000006062 | map3k14-205 | 17 | 45289268 | 45317029 | - | mRNA | protein_coding |
| -79042 | enst00000592695 | sg00000168517 | hexim2-207 | 17 | 45161917 | 45170035 | + | mRNA | protein_coding |
| -79063 | enst00000591070 | sg00000168517 | hexim2-205 | 17 | 45161896 | 45169185 | + | mRNA | protein_coding |
| -79064 | enst00000591576 | sg00000168517 | hexim2-206 | 17 | 45161895 | 45170035 | + | mRNA | protein_coding |
| -79114 | enst00000589230 | sg00000168517 | hexim2-204 | 17 | 45161845 | 45169365 | + | mRNA | protein_coding |
| -79449 | enst00000589950 | sg00000224505 | ac138150.1-201 | 17 | 45150400 | 45161510 | - | lnc_RNA | lncrna |
| -79865 | enst00000586681 | sg00000168517 | hexim2-203 | 17 | 45161094 | 45169380 | + | mRNA | protein_coding |
| -79881 | enst00000593138 | sg00000168517 | hexim2-208 | 17 | 45161078 | 45169314 | + | mRNA | protein_coding |
| -80229 | enst00000585340 | sg00000168517 | hexim2-202 | 17 | 45160730 | 45169493 | + | mRNA | protein_coding |
| -80259 | enst00000307275 | sg00000168517 | hexim2-201 | 17 | 45160700 | 45170040 | + | mRNA | protein_coding |
| -81504 | enst00000452741 | sg00000224505 | ac138150.1-202 | 17 | 45150618 | 45159455 | - | lnc_RNA | lncrna |
| 85271 | enst00000363083 | sg00000199953 | rna5sp443-201 | 17 | 45327366 | 45327497 | - | rRNA | rrna |
| 85271 | enst00000650192 | sg00000285757 | ac003070.7-201 | 17 | 45327366 | 45327497 | - | pseudogenic_transcript | rrna_pseudogene |
| -92457 | enst00000332499 | sg00000186834 | hexim1-201 | 17 | 45148502 | 45152101 | + | mRNA | protein_coding |
| -92489 | enst00000612013 | sg00000276728 | ac142472.1-201 | 17 | 45146730 | 45148470 | - | lnc_RNA | lncrna |
| -104758 | enst00000591136 | sg00000181513 | acbd4-213 | 17 | 45136201 | 45138544 | + | lnc_RNA | processed_transcript |
| -104851 | enst00000589798 | sg00000181513 | acbd4-211 | 17 | 45136108 | 45137835 | + | mRNA | nonsense_mediated_decay |
| -104863 | enst00000589752 | sg00000181513 | acbd4-210 | 17 | 45136096 | 45137636 | + | lnc_RNA | retained_intron |
| -105251 | enst00000321854 | sg00000181513 | acbd4-201 | 17 | 45135708 | 45144176 | + | mRNA | protein_coding |
| -105265 | enst00000376955 | sg00000181513 | acbd4-202 | 17 | 45135694 | 45142959 | + | mRNA | protein_coding |
| -105269 | enst00000592162 | sg00000181513 | acbd4-215 | 17 | 45135690 | 45144176 | + | mRNA | protein_coding |
| -105271 | enst00000590289 | sg00000181513 | acbd4-212 | 17 | 45135688 | 45137454 | + | lnc_RNA | retained_intron |
| -105272 | enst00000398322 | sg00000181513 | acbd4-203 | 17 | 45135687 | 45144181 | + | mRNA | protein_coding |
| -105310 | enst00000585553 | sg00000181513 | acbd4-205 | 17 | 45135649 | 45144176 | + | lnc_RNA | retained_intron |
| -105312 | enst00000586346 | sg00000181513 | acbd4-207 | 17 | 45135647 | 45143850 | + | mRNA | protein_coding |
| -107605 | enst00000590644 | sg00000161714 | plcd3-208 | 17 | 45120355 | 45133354 | - | mRNA | protein_coding |
| -107746 | enst00000538093 | sg00000161714 | plcd3-201 | 17 | 45120436 | 45133213 | - | mRNA | protein_coding |
| -108328 | enst00000591859 | sg00000181513 | acbd4-214 | 17 | 45132631 | 45144176 | + | mRNA | protein_coding |
| -108330 | enst00000586279 | sg00000181513 | acbd4-206 | 17 | 45132629 | 45135704 | + | lnc_RNA | processed_transcript |
| -108354 | enst00000587111 | sg00000181513 | acbd4-208 | 17 | 45132605 | 45135949 | + | lnc_RNA | processed_transcript |
| -108359 | enst00000431281 | sg00000181513 | acbd4-204 | 17 | 45132600 | 45144172 | + | mRNA | protein_coding |
| -108359 | enst00000619916 | sg00000181513 | acbd4-216 | 17 | 45132600 | 45142610 | + | mRNA | protein_coding |
| -108359 | enst00000587976 | sg00000181513 | acbd4-209 | 17 | 45132600 | 45135865 | + | lnc_RNA | processed_transcript |
| -108441 | enst00000544446 | sg00000161714 | plcd3-206 | 17 | 45121236 | 45132518 | - | lnc_RNA | processed_transcript |
| -108444 | enst00000619929 | sg00000161714 | plcd3-212 | 17 | 45108959 | 45132515 | - | mRNA | protein_coding |
| -121870 | enst00000546350 | sg00000161714 | plcd3-207 | 17 | 45118056 | 45119089 | - | lnc_RNA | retained_intron |
| -121947 | enst00000538988 | sg00000161714 | plcd3-202 | 17 | 45118372 | 45119012 | - | lnc_RNA | processed_transcript |
| -122037 | enst00000542173 | sg00000161714 | plcd3-204 | 17 | 45118254 | 45118922 | - | lnc_RNA | retained_intron |
| -124248 | enst00000611986 | sg00000161714 | plcd3-209 | 17 | 45114250 | 45116711 | - | lnc_RNA | processed_transcript |
| -125581 | enst00000615898 | sg00000161714 | plcd3-210 | 17 | 45113572 | 45115378 | - | lnc_RNA | processed_transcript |
| -125616 | enst00000618022 | sg00000161714 | plcd3-211 | 17 | 45113478 | 45115343 | - | lnc_RNA | retained_intron |
| -125831 | enst00000543623 | sg00000161714 | plcd3-205 | 17 | 45112423 | 45115128 | - | lnc_RNA | processed_transcript |
| -126526 | enst00000611997 | sg00000277249 | mir6784-201 | 17 | 45114367 | 45114433 | - | miRNA | mirna |
| -127411 | enst00000539433 | sg00000161714 | plcd3-203 | 17 | 45112303 | 45113548 | - | mRNA | protein_coding |
| 129831 | enst00000589730 | sg00000267446 | ac003070.2-201 | 17 | 45371402 | 45372057 | - | lnc_RNA | lncrna |
| -135194 | enst00000587670 | sg00000136448 | nmt1-206 | 17 | 45105765 | 45108134 | + | lnc_RNA | processed_transcript |
| -135315 | enst00000587120 | sg00000136448 | nmt1-205 | 17 | 45105644 | 45109016 | + | lnc_RNA | processed_transcript |
| -136342 | enst00000591931 | sg00000136448 | nmt1-211 | 17 | 45104617 | 45105986 | + | lnc_RNA | retained_intron |
| -137996 | enst00000587014 | sg00000136448 | nmt1-204 | 17 | 45102963 | 45104322 | + | lnc_RNA | retained_intron |
| -143831 | enst00000590310 | sg00000136448 | nmt1-210 | 17 | 45097128 | 45099820 | + | lnc_RNA | retained_intron |
| -147328 | enst00000588455 | sg00000136448 | nmt1-207 | 17 | 45093631 | 45099436 | + | lnc_RNA | retained_intron |
| 153682 | enst00000590026 | sg00000159314 | arhgap27-219 | 17 | 45395427 | 45395908 | - | lnc_RNA | retained_intron |
| 153937 | enst00000581991 | sg00000159314 | arhgap27-217 | 17 | 45395455 | 45396163 | - | lnc_RNA | retained_intron |
| 154544 | enst00000581638 | sg00000159314 | arhgap27-216 | 17 | 45396063 | 45396770 | - | lnc_RNA | retained_intron |
| 154706 | enst00000592389 | sg00000267344 | ac003070.1-201 | 17 | 45396932 | 45397477 | + | lnc_RNA | lncrna |
| 161442 | enst00000582826 | sg00000159314 | arhgap27-218 | 17 | 45397205 | 45403668 | - | lnc_RNA | processed_transcript |
| 161960 | enst00000526484 | sg00000159314 | arhgap27-205 | 17 | 45397965 | 45404186 | - | lnc_RNA | retained_intron |
| 162476 | enst00000532667 | sg00000159314 | arhgap27-213 | 17 | 45402774 | 45404702 | - | lnc_RNA | retained_intron |
| 163708 | enst00000528384 | sg00000159314 | arhgap27-208 | 17 | 45394943 | 45405934 | - | mRNA | protein_coding |
| 168159 | enst00000579357 | sg00000159314 | arhgap27-215 | 17 | 45407533 | 45410385 | - | lnc_RNA | retained_intron |
| 168160 | enst00000529357 | sg00000159314 | arhgap27-210 | 17 | 45397514 | 45410386 | - | lnc_RNA | retained_intron |
| 168198 | enst00000532038 | sg00000159314 | arhgap27-212 | 17 | 45393902 | 45410424 | - | mRNA | protein_coding |
| 168200 | enst00000528677 | sg00000159314 | arhgap27-209 | 17 | 45404445 | 45410426 | - | mRNA | protein_coding |
| -169517 | enst00000364018 | sg00000200888 | ac116493.1-201 | 17 | 45071442 | 45071543 | + | ncRNA | misc_rna |
| -179280 | enst00000592654 | sg00000136448 | nmt1-212 | 17 | 45061679 | 45093756 | + | mRNA | protein_coding |
| -179625 | enst00000585561 | sg00000136448 | nmt1-203 | 17 | 45061334 | 45097244 | + | mRNA | nonsense_mediated_decay |
| -179625 | enst00000590114 | sg00000136448 | nmt1-209 | 17 | 45061334 | 45098455 | + | lnc_RNA | processed_transcript |
| -179639 | enst00000543908 | sg00000136448 | nmt1-202 | 17 | 45061320 | 45098843 | + | mRNA | nonsense_mediated_decay |
| -179642 | enst00000258960 | sg00000136448 | nmt1-201 | 17 | 45061317 | 45109016 | + | mRNA | protein_coding |
| -179653 | enst00000588975 | sg00000136448 | nmt1-208 | 17 | 45061306 | 45086535 | + | lnc_RNA | processed_transcript |
| -179850 | enst00000310604 | sg00000172992 | dcakd-201 | 17 | 45023346 | 45061109 | - | mRNA | protein_coding |
| -179941 | enst00000342350 | sg00000172992 | dcakd-202 | 17 | 45023344 | 45061018 | - | mRNA | protein_coding |
| 183390 | enst00000524404 | sg00000159314 | arhgap27-204 | 17 | 45402714 | 45425616 | - | mRNA | nonsense_mediated_decay |
| 183405 | enst00000376922 | sg00000159314 | arhgap27-202 | 17 | 45393909 | 45425631 | - | mRNA | protein_coding |
| 188053 | enst00000532891 | sg00000159314 | arhgap27-214 | 17 | 45395456 | 45430279 | - | mRNA | protein_coding |
| 188071 | enst00000428638 | sg00000159314 | arhgap27-203 | 17 | 45393902 | 45430297 | - | mRNA | protein_coding |
| -189298 | enst00000588295 | sg00000172992 | dcakd-204 | 17 | 45033855 | 45051661 | - | lnc_RNA | processed_transcript |
| -189327 | enst00000651974 | sg00000172992 | dcakd-209 | 17 | 45023344 | 45051632 | - | mRNA | protein_coding |
| -189340 | enst00000593094 | sg00000172992 | dcakd-207 | 17 | 45024502 | 45051619 | - | mRNA | protein_coding |
| -189349 | enst00000592782 | sg00000136448 | nmt1-213 | 17 | 45051610 | 45109016 | + | mRNA | protein_coding |
| -189349 | enst00000588499 | sg00000172992 | dcakd-205 | 17 | 45024311 | 45051610 | - | mRNA | protein_coding |
| -189442 | enst00000614054 | sg00000172992 | dcakd-208 | 17 | 45023346 | 45051517 | - | mRNA | protein_coding |
| 190123 | enst00000531735 | sg00000159314 | arhgap27-211 | 17 | 45393909 | 45432349 | - | lnc_RNA | retained_intron |
| 190627 | enst00000527678 | sg00000159314 | arhgap27-206 | 17 | 45404475 | 45432853 | - | lnc_RNA | retained_intron |
| 190690 | enst00000290470 | sg00000159314 | arhgap27-201 | 17 | 45429353 | 45432916 | - | mRNA | protein_coding |
| 192195 | enst00000528273 | sg00000159314 | arhgap27-207 | 17 | 45429352 | 45434421 | - | mRNA | protein_coding |
| 198147 | enst00000585506 | sg00000225190 | plekhm1-213 | 17 | 45439514 | 45440373 | - | lnc_RNA | retained_intron |
| 198833 | enst00000579131 | sg00000225190 | plekhm1-203 | 17 | 45437916 | 45441059 | - | lnc_RNA | processed_transcript |
| 203281 | enst00000590991 | sg00000225190 | plekhm1-217 | 17 | 45439546 | 45445507 | - | mRNA | nonsense_mediated_decay |
| 203307 | enst00000591580 | sg00000225190 | plekhm1-218 | 17 | 45437549 | 45445533 | - | mRNA | protein_coding |
| 204047 | enst00000580404 | sg00000225190 | plekhm1-206 | 17 | 45435903 | 45446273 | - | lnc_RNA | processed_transcript |
| -205818 | enst00000452796 | sg00000172992 | dcakd-203 | 17 | 45023340 | 45035141 | - | mRNA | protein_coding |
| 205886 | enst00000583150 | sg00000225190 | plekhm1-211 | 17 | 45439615 | 45448112 | - | lnc_RNA | processed_transcript |
| -206070 | enst00000592902 | sg00000172992 | dcakd-206 | 17 | 45032044 | 45034889 | - | lnc_RNA | processed_transcript |
| 210618 | enst00000433601 | sg00000236234 | ac091132.2-201 | 17 | 45452844 | 45464065 | + | lnc_RNA | lncrna |
| 212545 | enst00000582035 | sg00000225190 | plekhm1-209 | 17 | 45452938 | 45454771 | - | lnc_RNA | retained_intron |
| 218206 | enst00000580205 | sg00000225190 | plekhm1-205 | 17 | 45452938 | 45460432 | - | lnc_RNA | processed_transcript |
| 233209 | enst00000636800 | sg00000284055 | mir4315-1-201 | 17 | 45475363 | 45475435 | - | miRNA | mirna |
| 240299 | enst00000581932 | sg00000225190 | plekhm1-208 | 17 | 45477074 | 45482525 | - | lnc_RNA | retained_intron |
| 245632 | enst00000446609 | sg00000225190 | plekhm1-202 | 17 | 45440163 | 45487858 | - | mRNA | nonsense_mediated_decay |
| 245636 | enst00000582119 | sg00000225190 | plekhm1-210 | 17 | 45468246 | 45487862 | - | lnc_RNA | processed_transcript |
| 248495 | enst00000430334 | sg00000225190 | plekhm1-201 | 17 | 45435900 | 45490721 | - | mRNA | protein_coding |
| 248502 | enst00000579197 | sg00000225190 | plekhm1-204 | 17 | 45435904 | 45490728 | - | mRNA | nonsense_mediated_decay |
| 248503 | enst00000581448 | sg00000225190 | plekhm1-207 | 17 | 45437471 | 45490729 | - | mRNA | nonsense_mediated_decay |
| 248512 | enst00000584420 | sg00000225190 | plekhm1-212 | 17 | 45475211 | 45490738 | - | mRNA | protein_coding |
| 248515 | enst00000589780 | sg00000225190 | plekhm1-216 | 17 | 45475366 | 45490741 | - | mRNA | protein_coding |
| 248515 | enst00000586084 | sg00000225190 | plekhm1-214 | 17 | 45475696 | 45490741 | - | mRNA | nonsense_mediated_decay |
| 248523 | enst00000586562 | sg00000225190 | plekhm1-215 | 17 | 45475597 | 45490749 | - | lnc_RNA | processed_transcript |
| -258445 | enst00000593177 | sg00000267788 | ac015936.2-201 | 17 | 44982514 | 44982772 | + | lnc_RNA | lncrna |
| -272656 | enst00000253407 | sg00000131094 | c1ql1-201 | 17 | 44959693 | 44968303 | - | mRNA | protein_coding |
| 272930 | enst00000579913 | sg00000214425 | lrrc37a4p-201 | 17 | 45506741 | 45515156 | - | lnc_RNA | processed_transcript |
| 284520 | enst00000585071 | sg00000278770 | ac091132.6-201 | 17 | 45526466 | 45526746 | - | ncRNA | misc_rna |
| 289351 | enst00000587960 | sg00000266918 | ac091132.3-201 | 17 | 45531577 | 45533838 | + | unconfirmed_transcript | tec |
| 291737 | enst00000588189 | sg00000131484 | ac091132.1-201 | 17 | 45533963 | 45534710 | + | lnc_RNA | lncrna |
| -293047 | enst00000591013 | sg00000267334 | ac015936.1-201 | 17 | 44947912 | 44948939 | + | lnc_RNA | lncrna |
| -293186 | enst00000593135 | sg00000186185 | kif18b-204 | 17 | 44924711 | 44947773 | - | mRNA | protein_coding |
| -293322 | enst00000587309 | sg00000186185 | kif18b-202 | 17 | 44924709 | 44947637 | - | mRNA | protein_coding |
| 303578 | enst00000590995 | sg00000267198 | ac091132.4-201 | 17 | 45545804 | 45549481 | + | lnc_RNA | lncrna |
| 303579 | enst00000587078 | sg00000267198 | ac091132.4-202 | 17 | 45545805 | 45558767 | + | lnc_RNA | lncrna |
| 303651 | enst00000591950 | sg00000267198 | ac091132.4-203 | 17 | 45545877 | 45554370 | + | lnc_RNA | lncrna |
| 303674 | enst00000586348 | sg00000267198 | ac091132.4-204 | 17 | 45545900 | 45563230 | + | lnc_RNA | lncrna |
| -304588 | enst00000590129 | sg00000186185 | kif18b-203 | 17 | 44926360 | 44936371 | - | mRNA | protein_coding |
| -306278 | enst00000619908 | sg00000278223 | mir6783-201 | 17 | 44934618 | 44934681 | - | miRNA | mirna |
| -306983 | enst00000585687 | sg00000186185 | kif18b-201 | 17 | 44932322 | 44933976 | - | lnc_RNA | retained_intron |
| 308109 | enst00000581296 | sg00000214425 | lrrc37a4p-202 | 17 | 45508109 | 45550335 | - | pseudogenic_transcript | transcribed_unprocessed_pseudogene |
| 309311 | enst00000661058 | sg00000214425 | lrrc37a4p-203 | 17 | 45518636 | 45551537 | - | lnc_RNA | processed_transcript |
| 310629 | enst00000585761 | sg00000267198 | ac091132.4-205 | 17 | 45552855 | 45553805 | + | lnc_RNA | lncrna |
| 316512 | enst00000586411 | sg00000267246 | ac091132.5-201 | 17 | 45549781 | 45558738 | - | lnc_RNA | lncrna |
| 316844 | enst00000579701 | sg00000266504 | rdm1p1-201 | 17 | 45553710 | 45559070 | - | pseudogenic_transcript | transcribed_unprocessed_pseudogene |
| -324022 | enst00000593179 | sg00000131095 | gfap-224 | 17 | 44915461 | 44916937 | - | mRNA | protein_coding |
| -325008 | enst00000588957 | sg00000131095 | gfap-215 | 17 | 44911674 | 44915951 | - | mRNA | protein_coding |
| -325455 | enst00000592320 | sg00000131095 | gfap-222 | 17 | 44910618 | 44915504 | - | mRNA | protein_coding |
| -325456 | enst00000588037 | sg00000131095 | gfap-211 | 17 | 44913799 | 44915503 | - | mRNA | protein_coding |
| -325459 | enst00000588735 | sg00000131095 | gfap-214 | 17 | 44903159 | 44915500 | - | mRNA | protein_coding |
| -325459 | enst00000586793 | sg00000131095 | gfap-209 | 17 | 44910647 | 44915500 | - | mRNA | protein_coding |
| -325459 | enst00000376990 | sg00000131095 | gfap-202 | 17 | 44911303 | 44915500 | - | mRNA | nonsense_mediated_decay |
| -325459 | enst00000640552 | sg00000131095 | gfap-237 | 17 | 44908227 | 44915500 | - | lnc_RNA | retained_intron |
| -325459 | enst00000435360 | sg00000131095 | gfap-203 | 17 | 44909667 | 44915500 | - | mRNA | protein_coding |
| -325459 | enst00000253408 | sg00000131095 | gfap-201 | 17 | 44905645 | 44915500 | - | mRNA | protein_coding |
| -325459 | enst00000585728 | sg00000131095 | gfap-206 | 17 | 44913313 | 44915500 | - | mRNA | nonsense_mediated_decay |
| -325459 | enst00000639277 | sg00000131095 | gfap-233 | 17 | 44903161 | 44915500 | - | mRNA | protein_coding |
| -325460 | enst00000591327 | sg00000131095 | gfap-218 | 17 | 44909685 | 44915499 | - | lnc_RNA | retained_intron |
| -325471 | enst00000588316 | sg00000131095 | gfap-212 | 17 | 44911697 | 44915488 | - | mRNA | protein_coding |
| -325473 | enst00000638281 | sg00000131095 | gfap-225 | 17 | 44909687 | 44915486 | - | mRNA | protein_coding |
| -325818 | enst00000638618 | sg00000131095 | gfap-229 | 17 | 44906088 | 44915141 | - | mRNA | protein_coding |
| -325881 | enst00000586127 | sg00000131095 | gfap-208 | 17 | 44910637 | 44915078 | - | lnc_RNA | retained_intron |
| -327261 | enst00000590922 | sg00000131095 | gfap-217 | 17 | 44911672 | 44913698 | - | lnc_RNA | retained_intron |
| -327263 | enst00000587997 | sg00000131095 | gfap-210 | 17 | 44910653 | 44913696 | - | lnc_RNA | processed_transcript |
| -328025 | enst00000588640 | sg00000131095 | gfap-213 | 17 | 44908135 | 44912934 | - | lnc_RNA | processed_transcript |
| -328192 | enst00000591719 | sg00000131095 | gfap-219 | 17 | 44911412 | 44912767 | - | lnc_RNA | processed_transcript |
| -329444 | enst00000585543 | sg00000131095 | gfap-205 | 17 | 44907205 | 44911515 | - | lnc_RNA | retained_intron |
| -329640 | enst00000639921 | sg00000131095 | gfap-235 | 17 | 44909733 | 44911319 | - | mRNA | protein_coding |
| -329656 | enst00000638488 | sg00000131095 | gfap-228 | 17 | 44903230 | 44911303 | - | lnc_RNA | retained_intron |
| -329660 | enst00000639042 | sg00000131095 | gfap-231 | 17 | 44903314 | 44911299 | - | mRNA | nonsense_mediated_decay |
| -329662 | enst00000586125 | sg00000131095 | gfap-207 | 17 | 44905714 | 44911297 | - | mRNA | protein_coding |
| -329667 | enst00000591880 | sg00000131095 | gfap-220 | 17 | 44907317 | 44911292 | - | mRNA | protein_coding |
| -329678 | enst00000638304 | sg00000131095 | gfap-226 | 17 | 44903187 | 44911281 | - | mRNA | protein_coding |
| -330324 | enst00000639369 | sg00000131095 | gfap-234 | 17 | 44903234 | 44910635 | - | mRNA | nonsense_mediated_decay |
| -330339 | enst00000638400 | sg00000131095 | gfap-227 | 17 | 44903254 | 44910620 | - | mRNA | nonsense_mediated_decay |
| -330732 | enst00000589701 | sg00000131095 | gfap-216 | 17 | 44906885 | 44910227 | - | lnc_RNA | retained_intron |
| -330844 | enst00000441312 | sg00000131095 | gfap-204 | 17 | 44903188 | 44910115 | - | lnc_RNA | processed_transcript |
| -331207 | enst00000592706 | sg00000131095 | gfap-223 | 17 | 44906939 | 44909752 | - | lnc_RNA | processed_transcript |
| -332271 | enst00000592065 | sg00000131095 | gfap-221 | 17 | 44903236 | 44908688 | - | lnc_RNA | retained_intron |
| -332712 | enst00000638921 | sg00000131095 | gfap-230 | 17 | 44905631 | 44908247 | - | lnc_RNA | retained_intron |
| -332825 | enst00000640859 | sg00000131095 | gfap-238 | 17 | 44903241 | 44908134 | - | mRNA | nonsense_mediated_decay |
| -332833 | enst00000640545 | sg00000131095 | gfap-236 | 17 | 44904080 | 44908126 | - | mRNA | protein_coding |
| -332883 | enst00000639243 | sg00000131095 | gfap-232 | 17 | 44903198 | 44908076 | - | mRNA | nonsense_mediated_decay |
| -341185 | enst00000331733 | sg00000214447 | fam187a-201 | 17 | 44899774 | 44905390 | + | mRNA | protein_coding |
| -341220 | enst00000410027 | sg00000167131 | ccdc103-203 | 17 | 44899739 | 44902482 | + | mRNA | protein_coding |
| -341230 | enst00000417826 | sg00000167131 | ccdc103-204 | 17 | 44899729 | 44905390 | + | mRNA | protein_coding |
| -341243 | enst00000357776 | sg00000167131 | ccdc103-201 | 17 | 44899716 | 44902800 | + | mRNA | protein_coding |
| -341247 | enst00000412523 | sg00000214447 | fam187a-202 | 17 | 44899712 | 44903679 | + | mRNA | protein_coding |
| -341247 | enst00000410006 | sg00000167131 | ccdc103-202 | 17 | 44899712 | 44902882 | + | mRNA | protein_coding |
| -341514 | enst00000426333 | sg00000108883 | eftud2-202 | 17 | 44849948 | 44899445 | - | mRNA | protein_coding |
| -341514 | enst00000402521 | sg00000108883 | eftud2-201 | 17 | 44851120 | 44899445 | - | mRNA | protein_coding |
| -341514 | enst00000589825 | sg00000108883 | eftud2-215 | 17 | 44883556 | 44899445 | - | lnc_RNA | retained_intron |
| -341528 | enst00000592576 | sg00000108883 | eftud2-223 | 17 | 44850866 | 44899431 | - | mRNA | protein_coding |
| -341556 | enst00000592408 | sg00000108883 | eftud2-222 | 17 | 44885256 | 44899403 | - | lnc_RNA | retained_intron |
| -341556 | enst00000593072 | sg00000108883 | eftud2-225 | 17 | 44883140 | 44899403 | - | mRNA | protein_coding |
| -341556 | enst00000590105 | sg00000108883 | eftud2-216 | 17 | 44894134 | 44899403 | - | lnc_RNA | retained_intron |
| -341591 | enst00000591382 | sg00000108883 | eftud2-220 | 17 | 44850916 | 44899368 | - | mRNA | protein_coding |
| -341817 | enst00000577339 | sg00000167131 | ccdc103-205 | 17 | 44899142 | 44901554 | + | mRNA | protein_coding |
| -341910 | enst00000592701 | sg00000108883 | eftud2-224 | 17 | 44885287 | 44899049 | - | mRNA | protein_coding |
| 343645 | enst00000580842 | sg00000264070 | dnd1p1-201 | 17 | 45585871 | 45586929 | + | pseudogenic_transcript | processed_pseudogene |
| 346153 | enst00000650501 | sg00000285668 | ac126544.2-201 | 17 | 45586452 | 45588379 | - | lnc_RNA | lncrna |
| -346462 | enst00000588374 | sg00000108883 | eftud2-211 | 17 | 44876089 | 44894497 | - | mRNA | nonsense_mediated_decay |
| -348630 | enst00000589211 | sg00000108883 | eftud2-212 | 17 | 44886663 | 44892329 | - | lnc_RNA | processed_transcript |
| 350395 | enst00000625174 | sg00000280022 | ac126544.1-201 | 17 | 45592621 | 45593369 | + | unconfirmed_transcript | tec |
| -356973 | enst00000582502 | sg00000264540 | rn7sl405p-201 | 17 | 44883986 | 44884274 | + | ncRNA | misc_rna |
| -359116 | enst00000586875 | sg00000108883 | eftud2-207 | 17 | 44880477 | 44881843 | - | lnc_RNA | retained_intron |
| -359124 | enst00000593200 | sg00000108883 | eftud2-226 | 17 | 44875939 | 44881835 | - | lnc_RNA | retained_intron |
| 360114 | enst00000580257 | sg00000263503 | mapk8ip1p2-201 | 17 | 45600869 | 45602340 | - | pseudogenic_transcript | processed_pseudogene |
| -360329 | enst00000589475 | sg00000108883 | eftud2-213 | 17 | 44879516 | 44880630 | - | lnc_RNA | retained_intron |
| -361369 | enst00000587957 | sg00000108883 | eftud2-209 | 17 | 44875633 | 44879590 | - | lnc_RNA | retained_intron |
| 366345 | enst00000393490 | sg00000204652 | rps26p8-201 | 17 | 45608571 | 45608918 | + | pseudogenic_transcript | processed_pseudogene |
| -367792 | enst00000590367 | sg00000108883 | eftud2-218 | 17 | 44850916 | 44873167 | - | lnc_RNA | retained_intron |
| -368433 | enst00000591856 | sg00000108883 | eftud2-221 | 17 | 44864970 | 44872526 | - | mRNA | nonsense_mediated_decay |
| -372560 | enst00000586654 | sg00000108883 | eftud2-206 | 17 | 44862790 | 44868399 | - | lnc_RNA | retained_intron |
| -375691 | enst00000585616 | sg00000108883 | eftud2-203 | 17 | 44860454 | 44865268 | - | lnc_RNA | processed_transcript |
| -375727 | enst00000585794 | sg00000108883 | eftud2-204 | 17 | 44862760 | 44865232 | - | lnc_RNA | retained_intron |
| -376897 | enst00000587914 | sg00000108883 | eftud2-208 | 17 | 44862753 | 44864062 | - | lnc_RNA | retained_intron |
| -377364 | enst00000586276 | sg00000108883 | eftud2-205 | 17 | 44850810 | 44863595 | - | lnc_RNA | retained_intron |
| 378102 | enst00000585118 | sg00000204650 | linc02210-208 | 17 | 45620328 | 45636394 | + | lnc_RNA | processed_transcript |
| 378114 | enst00000591271 | sg00000204650 | linc02210-213 | 17 | 45620340 | 45655156 | + | lnc_RNA | processed_transcript |
| 378116 | enst00000582491 | sg00000204650 | linc02210-206 | 17 | 45620342 | 45630456 | + | lnc_RNA | retained_intron |
| 378118 | enst00000634540 | sg00000263715 | linc02210-crhr1-202 | 17 | 45620344 | 45835826 | + | mRNA | protein_coding |
| 378120 | enst00000583740 | sg00000204650 | linc02210-207 | 17 | 45620346 | 45630605 | + | lnc_RNA | processed_transcript |
| 378120 | enst00000585122 | sg00000204650 | linc02210-209 | 17 | 45620346 | 45636473 | + | lnc_RNA | processed_transcript |
| 378384 | enst00000455565 | sg00000204650 | linc02210-202 | 17 | 45620610 | 45637959 | + | lnc_RNA | processed_transcript |
| 379682 | enst00000580220 | sg00000204650 | linc02210-204 | 17 | 45621908 | 45636344 | + | lnc_RNA | processed_transcript |
| 379700 | enst00000587305 | sg00000263715 | linc02210-crhr1-201 | 17 | 45621926 | 45816487 | + | lnc_RNA | processed_transcript |
| -381310 | enst00000590977 | sg00000108883 | eftud2-219 | 17 | 44850917 | 44859649 | - | lnc_RNA | retained_intron |
| -383320 | enst00000588340 | sg00000108883 | eftud2-210 | 17 | 44854975 | 44857639 | - | lnc_RNA | retained_intron |
| -383838 | enst00000590124 | sg00000108883 | eftud2-217 | 17 | 44851047 | 44857121 | - | mRNA | protein_coding |
| -386297 | enst00000589769 | sg00000108883 | eftud2-214 | 17 | 44851257 | 44854662 | - | mRNA | nonsense_mediated_decay |
| 390823 | enst00000444561 | sg00000204650 | linc02210-201 | 17 | 45633049 | 45636444 | + | pseudogenic_transcript | transcribed_unitary_pseudogene |
| -392748 | enst00000586911 | sg00000131097 | higd1b-202 | 17 | 44848211 | 44850476 | + | mRNA | nonsense_mediated_decay |
| -393018 | enst00000587021 | sg00000131097 | higd1b-203 | 17 | 44847941 | 44850476 | + | mRNA | protein_coding |
| -393061 | enst00000590423 | sg00000131097 | higd1b-204 | 17 | 44847898 | 44849213 | + | lnc_RNA | processed_transcript |
| -393076 | enst00000253410 | sg00000131097 | higd1b-201 | 17 | 44847883 | 44850476 | + | mRNA | protein_coding |
| -394606 | enst00000591513 | sg00000131097 | higd1b-205 | 17 | 44846353 | 44850476 | + | mRNA | protein_coding |
| 394975 | enst00000586362 | sg00000204650 | linc02210-211 | 17 | 45637201 | 45646230 | + | lnc_RNA | processed_transcript |
| 396749 | enst00000578000 | sg00000204650 | linc02210-203 | 17 | 45638975 | 45642300 | + | lnc_RNA | processed_transcript |
| 396749 | enst00000585677 | sg00000204650 | linc02210-210 | 17 | 45638975 | 45646008 | + | lnc_RNA | processed_transcript |
| 397211 | enst00000592428 | sg00000204650 | linc02210-214 | 17 | 45639437 | 45646232 | + | lnc_RNA | processed_transcript |
| 398136 | enst00000580655 | sg00000204650 | linc02210-205 | 17 | 45640362 | 45642303 | + | lnc_RNA | retained_intron |
| 403445 | enst00000589868 | sg00000204650 | linc02210-212 | 17 | 45645671 | 45648216 | + | lnc_RNA | retained_intron |
| -410143 | enst00000591424 | sg00000182963 | gjc1-208 | 17 | 44805507 | 44830816 | - | mRNA | protein_coding |
| -410146 | enst00000590758 | sg00000182963 | gjc1-207 | 17 | 44798448 | 44830813 | - | mRNA | protein_coding |
| -410148 | enst00000426548 | sg00000182963 | gjc1-202 | 17 | 44798448 | 44830811 | - | mRNA | protein_coding |
| -410672 | enst00000592524 | sg00000182963 | gjc1-209 | 17 | 44798448 | 44830287 | - | mRNA | protein_coding |
| -411265 | enst00000586267 | sg00000182963 | gjc1-203 | 17 | 44805608 | 44829694 | - | mRNA | protein_coding |
| -427654 | enst00000587239 | sg00000182963 | gjc1-206 | 17 | 44805600 | 44813305 | - | mRNA | protein_coding |
| -433075 | enst00000330514 | sg00000182963 | gjc1-201 | 17 | 44803034 | 44807884 | - | mRNA | protein_coding |
| -435550 | enst00000587113 | sg00000182963 | gjc1-205 | 17 | 44798448 | 44805409 | - | mRNA | protein_coding |
| -435993 | enst00000586347 | sg00000182963 | gjc1-204 | 17 | 44803949 | 44804966 | - | mRNA | protein_coding |
| -443176 | enst00000591137 | sg00000267405 | ac005180.1-201 | 17 | 44794747 | 44797783 | - | lnc_RNA | lncrna |
| -447760 | enst00000585620 | sg00000267505 | ac005180.2-201 | 17 | 44793199 | 44794474 | + | lnc_RNA | lncrna |
| -465401 | enst00000588363 | sg00000073670 | adam11-205 | 17 | 44775558 | 44777802 | + | lnc_RNA | retained_intron |
| -470973 | enst00000587773 | sg00000073670 | adam11-204 | 17 | 44769986 | 44780610 | + | mRNA | nonsense_mediated_decay |
| -481634 | enst00000535346 | sg00000073670 | adam11-203 | 17 | 44759325 | 44779875 | + | mRNA | protein_coding |
| -481780 | enst00000355638 | sg00000073670 | adam11-202 | 17 | 44759179 | 44781647 | + | mRNA | nonsense_mediated_decay |
| -481971 | enst00000200557 | sg00000073670 | adam11-201 | 17 | 44758988 | 44781846 | + | mRNA | protein_coding |
| 490751 | enst00000578936 | sg00000265547 | ac217774.1-201 | 17 | 45731703 | 45732977 | - | lnc_RNA | lncrna |
| 492443 | enst00000580347 | sg00000265964 | ac217774.2-201 | 17 | 45733353 | 45734669 | - | lnc_RNA | lncrna |
Source file: /hps/research1/birney/users/adrien/analyses/cancer_DNA_promethion/run_1_2_3_4/DNA_pipeline_2/results/methylation/pycometh_meth_comp_CGI_3/out.tsv.gz
MD5 hash: 9aa0e3f69cb4e12345c3758eb68a5efc