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CpG interval report generated on 20/05/20 with pycoMeth 0.4.6
Interval details
| pvalue rank | chromosome | start | end | length | number of samples | number of CpGs | pvalue | adjusted pvalue |
|---|---|---|---|---|---|---|---|---|
| #92 | 19 | 47446997 | 47448525 | 1528 | 3 | 46 | 4.51855e-18 | 4.88446e-16 |
Methylation log-likelihood ratio by CpG position
Distribution of CpG methylation log-likelihood ratio by sample
Closest transcripts TSS
| distance to tss | transcript id | gene id | transcript name | chromosome | start | end | strand | feature type | transcript biotype |
|---|---|---|---|---|---|---|---|---|---|
| 0 | enst00000601757 | sg00000118160 | slc8a2-207 | 19 | 47432407 | 47447622 | - | lnc_RNA | processed_transcript |
| -14429 | enst00000600576 | sg00000118160 | slc8a2-206 | 19 | 47430235 | 47432568 | - | lnc_RNA | retained_intron |
| 21385 | enst00000669287 | sg00000287896 | ac073548.2-201 | 19 | 47469910 | 47478550 | + | lnc_RNA | lncrna |
| 23338 | enst00000539381 | sg00000118160 | slc8a2-202 | 19 | 47429740 | 47471863 | - | lnc_RNA | processed_transcript |
| 23343 | enst00000594353 | sg00000118160 | slc8a2-204 | 19 | 47457513 | 47471868 | - | mRNA | protein_coding |
| 23347 | enst00000542837 | sg00000118160 | slc8a2-203 | 19 | 47428661 | 47471872 | - | mRNA | protein_coding |
| 23368 | enst00000236877 | sg00000118160 | slc8a2-201 | 19 | 47428017 | 47471893 | - | mRNA | protein_coding |
| 23368 | enst00000597014 | sg00000118160 | slc8a2-205 | 19 | 47465735 | 47471893 | - | mRNA | protein_coding |
| -27470 | enst00000558555 | sg00000105419 | meis3-204 | 19 | 47403124 | 47419527 | - | mRNA | protein_coding |
| -27474 | enst00000331559 | sg00000105419 | meis3-201 | 19 | 47403124 | 47419523 | - | mRNA | protein_coding |
| -27474 | enst00000607330 | sg00000105419 | meis3-213 | 19 | 47415063 | 47419523 | - | lnc_RNA | processed_transcript |
| 27662 | enst00000600551 | sg00000118162 | kptn-208 | 19 | 47475150 | 47476187 | - | lnc_RNA | processed_transcript |
| -27682 | enst00000441740 | sg00000105419 | meis3-202 | 19 | 47403124 | 47419315 | - | mRNA | protein_coding |
| -27709 | enst00000561293 | sg00000105419 | meis3-212 | 19 | 47403126 | 47419288 | - | mRNA | protein_coding |
| -27845 | enst00000557833 | sg00000105419 | meis3-203 | 19 | 47414836 | 47419152 | - | mRNA | protein_coding |
| -27875 | enst00000559524 | sg00000105419 | meis3-206 | 19 | 47405956 | 47419122 | - | mRNA | protein_coding |
| -28196 | enst00000561204 | sg00000105419 | meis3-211 | 19 | 47403124 | 47418801 | - | lnc_RNA | retained_intron |
| -29099 | enst00000561040 | sg00000105419 | meis3-209 | 19 | 47415876 | 47417898 | - | lnc_RNA | retained_intron |
| -29205 | enst00000561096 | sg00000105419 | meis3-210 | 19 | 47403125 | 47417792 | - | mRNA | protein_coding |
| -30272 | enst00000559338 | sg00000105419 | meis3-205 | 19 | 47407469 | 47416725 | - | mRNA | protein_coding |
| -32059 | enst00000560245 | sg00000105419 | meis3-207 | 19 | 47403125 | 47414938 | - | mRNA | protein_coding |
| -34610 | enst00000560253 | sg00000105419 | meis3-208 | 19 | 47403128 | 47412387 | - | lnc_RNA | processed_transcript |
| 35053 | enst00000594139 | sg00000118162 | kptn-202 | 19 | 47480557 | 47483578 | - | lnc_RNA | retained_intron |
| 35369 | enst00000598699 | sg00000118162 | kptn-206 | 19 | 47480827 | 47483894 | - | lnc_RNA | processed_transcript |
| 35637 | enst00000594208 | sg00000118162 | kptn-203 | 19 | 47475193 | 47484162 | - | mRNA | nonsense_mediated_decay |
| 35651 | enst00000595554 | sg00000118162 | kptn-205 | 19 | 47476844 | 47484176 | - | mRNA | protein_coding |
| 35694 | enst00000600271 | sg00000118162 | kptn-207 | 19 | 47477721 | 47484219 | - | mRNA | protein_coding |
| 35694 | enst00000338134 | sg00000118162 | kptn-201 | 19 | 47475150 | 47484219 | - | mRNA | protein_coding |
| 35736 | enst00000602193 | sg00000118162 | kptn-209 | 19 | 47480723 | 47484261 | - | lnc_RNA | processed_transcript |
| 35740 | enst00000595484 | sg00000118162 | kptn-204 | 19 | 47480692 | 47484265 | - | lnc_RNA | processed_transcript |
| 35757 | enst00000593284 | sg00000268061 | napa-as1-201 | 19 | 47484282 | 47496382 | + | lnc_RNA | lncrna |
| 35783 | enst00000594367 | sg00000268061 | napa-as1-202 | 19 | 47484308 | 47501597 | + | lnc_RNA | lncrna |
| -37845 | enst00000607695 | sg00000105419 | meis3-214 | 19 | 47407098 | 47409152 | - | mRNA | protein_coding |
| 40994 | enst00000624088 | sg00000279861 | ac073548.1-201 | 19 | 47487638 | 47489519 | - | unconfirmed_transcript | tec |
| 42950 | enst00000597271 | sg00000105402 | napa-215 | 19 | 47487662 | 47491475 | - | lnc_RNA | retained_intron |
| 43519 | enst00000594217 | sg00000105402 | napa-207 | 19 | 47487642 | 47492044 | - | mRNA | nonsense_mediated_decay |
| 45115 | enst00000593905 | sg00000105402 | napa-204 | 19 | 47489754 | 47493640 | - | lnc_RNA | retained_intron |
| 47301 | enst00000601927 | sg00000105402 | napa-220 | 19 | 47493101 | 47495826 | - | lnc_RNA | retained_intron |
| 48571 | enst00000597778 | sg00000105402 | napa-217 | 19 | 47487638 | 47497096 | - | lnc_RNA | retained_intron |
| 48977 | enst00000596892 | sg00000105402 | napa-212 | 19 | 47492994 | 47497502 | - | lnc_RNA | processed_transcript |
| 52224 | enst00000594155 | sg00000105402 | napa-206 | 19 | 47490788 | 47500749 | - | mRNA | protein_coding |
| 64241 | enst00000598615 | sg00000105402 | napa-218 | 19 | 47492061 | 47512766 | - | mRNA | protein_coding |
| 64270 | enst00000594288 | sg00000105402 | napa-208 | 19 | 47493018 | 47512795 | - | lnc_RNA | retained_intron |
| 64277 | enst00000597118 | sg00000105402 | napa-213 | 19 | 47492961 | 47512802 | - | mRNA | protein_coding |
| 66420 | enst00000602174 | sg00000105402 | napa-222 | 19 | 47492877 | 47514945 | - | lnc_RNA | retained_intron |
| 66480 | enst00000595826 | sg00000105402 | napa-211 | 19 | 47492950 | 47515005 | - | lnc_RNA | processed_transcript |
| 66495 | enst00000595227 | sg00000105402 | napa-210 | 19 | 47487679 | 47515020 | - | mRNA | protein_coding |
| 66497 | enst00000602082 | sg00000105402 | napa-221 | 19 | 47492586 | 47515022 | - | lnc_RNA | retained_intron |
| 66501 | enst00000593761 | sg00000105402 | napa-202 | 19 | 47489722 | 47515026 | - | mRNA | protein_coding |
| 66507 | enst00000594740 | sg00000105402 | napa-209 | 19 | 47493071 | 47515032 | - | lnc_RNA | retained_intron |
| 66514 | enst00000597160 | sg00000105402 | napa-214 | 19 | 47496596 | 47515039 | - | lnc_RNA | processed_transcript |
| 66514 | enst00000593785 | sg00000105402 | napa-203 | 19 | 47495773 | 47515039 | - | lnc_RNA | processed_transcript |
| 66518 | enst00000601208 | sg00000105402 | napa-219 | 19 | 47490844 | 47515043 | - | mRNA | nonsense_mediated_decay |
| 66533 | enst00000594001 | sg00000105402 | napa-205 | 19 | 47487680 | 47515058 | - | mRNA | nonsense_mediated_decay |
| 66538 | enst00000263354 | sg00000105402 | napa-201 | 19 | 47487637 | 47515063 | - | mRNA | protein_coding |
| 66566 | enst00000597274 | sg00000105402 | napa-216 | 19 | 47493083 | 47515091 | - | mRNA | nonsense_mediated_decay |
| -74200 | enst00000460681 | sg00000134815 | dhx34-202 | 19 | 47372797 | 47382279 | + | mRNA | nonsense_mediated_decay |
| -79884 | enst00000486327 | sg00000134815 | dhx34-204 | 19 | 47367113 | 47381571 | + | lnc_RNA | retained_intron |
| -88983 | enst00000471451 | sg00000134815 | dhx34-203 | 19 | 47358014 | 47372770 | + | lnc_RNA | processed_transcript |
| 92444 | enst00000487275 | sg00000118156 | znf541-204 | 19 | 47532167 | 47540969 | - | lnc_RNA | processed_transcript |
| 96736 | enst00000595558 | sg00000118156 | znf541-205 | 19 | 47521224 | 47545261 | - | mRNA | protein_coding |
| 96775 | enst00000263351 | sg00000118156 | znf541-201 | 19 | 47520690 | 47545300 | - | mRNA | protein_coding |
| -97682 | enst00000328771 | sg00000134815 | dhx34-201 | 19 | 47349315 | 47382704 | + | mRNA | protein_coding |
| 107331 | enst00000391901 | sg00000118156 | znf541-203 | 19 | 47520685 | 47555856 | - | mRNA | protein_coding |
| 107331 | enst00000314121 | sg00000118156 | znf541-202 | 19 | 47520691 | 47555856 | - | mRNA | protein_coding |
| -109883 | enst00000600626 | sg00000134830 | c5ar2-202 | 19 | 47337114 | 47342015 | + | mRNA | protein_coding |
| -114822 | enst00000595464 | sg00000134830 | c5ar2-201 | 19 | 47332175 | 47347329 | + | mRNA | protein_coding |
| 132498 | enst00000583519 | sg00000276588 | rn7sl322p-201 | 19 | 47581023 | 47581321 | + | ncRNA | misc_rna |
| -137136 | enst00000355085 | sg00000197405 | c5ar1-201 | 19 | 47309861 | 47322066 | + | mRNA | protein_coding |
| -149922 | enst00000594787 | sg00000197405 | c5ar1-202 | 19 | 47297075 | 47320186 | + | mRNA | protein_coding |
| -156974 | enst00000595501 | sg00000197405 | c5ar1-203 | 19 | 47290023 | 47307754 | + | lnc_RNA | processed_transcript |
| 158999 | enst00000599924 | sg00000268746 | ac010519.1-201 | 19 | 47607524 | 47733098 | + | lnc_RNA | lncrna |
| 159671 | enst00000396720 | sg00000063169 | bicra-201 | 19 | 47608196 | 47703277 | + | mRNA | protein_coding |
| 159929 | enst00000611423 | sg00000277383 | ac010331.1-201 | 19 | 47607873 | 47608454 | - | lnc_RNA | lncrna |
| 160598 | enst00000594866 | sg00000063169 | bicra-202 | 19 | 47609123 | 47679549 | + | mRNA | protein_coding |
| -172112 | enst00000552360 | sg00000257704 | inafm1-201 | 19 | 47274885 | 47275723 | + | mRNA | protein_coding |
| 177870 | enst00000598376 | sg00000269806 | bicra-as1-201 | 19 | 47615699 | 47626395 | - | lnc_RNA | lncrna |
| -180702 | enst00000600117 | sg00000105321 | ccdc9-205 | 19 | 47266295 | 47270587 | + | lnc_RNA | retained_intron |
| -188908 | enst00000596938 | sg00000105321 | ccdc9-203 | 19 | 47258089 | 47260357 | + | mRNA | protein_coding |
| -189457 | enst00000595659 | sg00000105321 | ccdc9-202 | 19 | 47257540 | 47260382 | + | mRNA | protein_coding |
| -189465 | enst00000599398 | sg00000105321 | ccdc9-204 | 19 | 47257532 | 47260762 | + | mRNA | protein_coding |
| -190472 | enst00000221922 | sg00000105321 | ccdc9-201 | 19 | 47256525 | 47271953 | + | mRNA | protein_coding |
| -190474 | enst00000643617 | sg00000105321 | ccdc9-207 | 19 | 47256523 | 47273701 | + | mRNA | protein_coding |
| -190520 | enst00000671594 | sg00000286669 | ac008532.1-201 | 19 | 47255850 | 47256477 | - | lnc_RNA | lncrna |
| -191017 | enst00000601154 | sg00000105321 | ccdc9-206 | 19 | 47255980 | 47256597 | + | lnc_RNA | processed_transcript |
| -214231 | enst00000300880 | sg00000105327 | bbc3-201 | 19 | 47220824 | 47232766 | - | mRNA | protein_coding |
| -214231 | enst00000341983 | sg00000105327 | bbc3-202 | 19 | 47220824 | 47232766 | - | mRNA | protein_coding |
| -214231 | enst00000449228 | sg00000105327 | bbc3-204 | 19 | 47220824 | 47232766 | - | mRNA | protein_coding |
| 215370 | enst00000624169 | sg00000278999 | ac008985.1-201 | 19 | 47661657 | 47663895 | - | unconfirmed_transcript | tec |
| -215803 | enst00000439096 | sg00000105327 | bbc3-203 | 19 | 47220827 | 47231194 | - | mRNA | protein_coding |
| -219808 | enst00000598636 | sg00000105327 | bbc3-205 | 19 | 47221645 | 47227189 | - | lnc_RNA | retained_intron |
| -219978 | enst00000636300 | sg00000284411 | mir3191-201 | 19 | 47226944 | 47227019 | - | miRNA | mirna |
| -220055 | enst00000577414 | sg00000265134 | mir3190-201 | 19 | 47226942 | 47227021 | + | miRNA | mirna |
| -224429 | enst00000601438 | sg00000105327 | bbc3-206 | 19 | 47220822 | 47222568 | - | lnc_RNA | retained_intron |
| 230437 | enst00000614245 | sg00000063169 | bicra-204 | 19 | 47678962 | 47703222 | + | mRNA | protein_coding |
| 251440 | enst00000602258 | sg00000063169 | bicra-203 | 19 | 47699965 | 47703276 | + | lnc_RNA | retained_intron |
| 264897 | enst00000263277 | sg00000024422 | ehd2-201 | 19 | 47713422 | 47743134 | + | mRNA | protein_coding |
| 264897 | enst00000538399 | sg00000024422 | ehd2-202 | 19 | 47713422 | 47741853 | + | mRNA | protein_coding |
| 277644 | enst00000602215 | sg00000024422 | ehd2-205 | 19 | 47726169 | 47731508 | + | lnc_RNA | processed_transcript |
| 277679 | enst00000596225 | sg00000024422 | ehd2-204 | 19 | 47726204 | 47741137 | + | mRNA | nonsense_mediated_decay |
| 281092 | enst00000540884 | sg00000024422 | ehd2-203 | 19 | 47729617 | 47741865 | + | lnc_RNA | processed_transcript |
| 297021 | enst00000246802 | sg00000105373 | nop53-201 | 19 | 47745546 | 47757058 | + | mRNA | protein_coding |
| 297026 | enst00000594525 | sg00000105373 | nop53-203 | 19 | 47745551 | 47752709 | + | lnc_RNA | retained_intron |
| 297040 | enst00000598681 | sg00000105373 | nop53-207 | 19 | 47745565 | 47756744 | + | lnc_RNA | processed_transcript |
| 297040 | enst00000600410 | sg00000105373 | nop53-212 | 19 | 47745565 | 47757057 | + | lnc_RNA | retained_intron |
| 297048 | enst00000599253 | sg00000105373 | nop53-209 | 19 | 47745573 | 47746686 | + | lnc_RNA | processed_transcript |
| 297366 | enst00000599582 | sg00000105373 | nop53-210 | 19 | 47745891 | 47752553 | + | lnc_RNA | processed_transcript |
| 301653 | enst00000595143 | sg00000105373 | nop53-204 | 19 | 47750178 | 47757005 | + | mRNA | protein_coding |
| 301711 | enst00000600266 | sg00000105373 | nop53-211 | 19 | 47750236 | 47751522 | + | lnc_RNA | retained_intron |
| 301721 | enst00000597985 | sg00000105373 | nop53-205 | 19 | 47750246 | 47757058 | + | mRNA | protein_coding |
| 302512 | enst00000598959 | sg00000105373 | nop53-208 | 19 | 47751037 | 47757058 | + | mRNA | protein_coding |
| -303503 | enst00000659110 | sg00000142230 | sae1-212 | 19 | 47143494 | 47210623 | + | mRNA | nonsense_mediated_decay |
| 306949 | enst00000594182 | sg00000105373 | nop53-202 | 19 | 47755474 | 47757057 | + | mRNA | protein_coding |
| 307328 | enst00000408876 | sg00000221803 | snord23-201 | 19 | 47755853 | 47755962 | + | snoRNA | snorna |
| 308005 | enst00000598285 | sg00000105373 | nop53-206 | 19 | 47756530 | 47757048 | + | lnc_RNA | retained_intron |
| -316102 | enst00000392776 | sg00000142230 | sae1-202 | 19 | 47130895 | 47210170 | + | mRNA | protein_coding |
| -316108 | enst00000596995 | sg00000142230 | sae1-207 | 19 | 47130889 | 47210190 | + | mRNA | nonsense_mediated_decay |
| -316108 | enst00000664120 | sg00000142230 | sae1-214 | 19 | 47130889 | 47210623 | + | mRNA | nonsense_mediated_decay |
| -316131 | enst00000660039 | sg00000142230 | sae1-213 | 19 | 47130866 | 47210623 | + | mRNA | nonsense_mediated_decay |
| -316136 | enst00000600753 | sg00000142230 | sae1-211 | 19 | 47130861 | 47153038 | + | mRNA | protein_coding |
| -316138 | enst00000414294 | sg00000142230 | sae1-204 | 19 | 47130859 | 47210191 | + | mRNA | nonsense_mediated_decay |
| -316159 | enst00000598840 | sg00000142230 | sae1-209 | 19 | 47130838 | 47210191 | + | mRNA | protein_coding |
| -316162 | enst00000270225 | sg00000142230 | sae1-201 | 19 | 47130835 | 47210636 | + | mRNA | protein_coding |
| -316167 | enst00000600706 | sg00000142230 | sae1-210 | 19 | 47130830 | 47169902 | + | mRNA | protein_coding |
| -316168 | enst00000413379 | sg00000142230 | sae1-203 | 19 | 47130829 | 47210636 | + | mRNA | protein_coding |
| -316215 | enst00000597808 | sg00000142230 | sae1-208 | 19 | 47130782 | 47155177 | + | mRNA | protein_coding |
| 320315 | enst00000602048 | sg00000269656 | nop53-as1-201 | 19 | 47757036 | 47768840 | - | lnc_RNA | lncrna |
| 330060 | enst00000612212 | sg00000178980 | selenow-216 | 19 | 47778585 | 47784684 | + | mRNA | protein_coding |
| 330060 | enst00000509570 | sg00000178980 | selenow-201 | 19 | 47778585 | 47784684 | + | mRNA | protein_coding |
| 330152 | enst00000593892 | sg00000178980 | selenow-202 | 19 | 47778677 | 47784564 | + | mRNA | protein_coding |
| 330158 | enst00000599874 | sg00000178980 | selenow-211 | 19 | 47778683 | 47784457 | + | mRNA | nonsense_mediated_decay |
| 330166 | enst00000601419 | sg00000178980 | selenow-213 | 19 | 47778691 | 47784654 | + | lnc_RNA | processed_transcript |
| 330176 | enst00000595615 | sg00000178980 | selenow-204 | 19 | 47778701 | 47781556 | + | mRNA | protein_coding |
| 330178 | enst00000601048 | sg00000178980 | selenow-212 | 19 | 47778703 | 47784682 | + | mRNA | protein_coding |
| 330184 | enst00000599590 | sg00000178980 | selenow-209 | 19 | 47778709 | 47779962 | + | lnc_RNA | processed_transcript |
| 330184 | enst00000599302 | sg00000178980 | selenow-208 | 19 | 47778709 | 47780177 | + | lnc_RNA | processed_transcript |
| 330408 | enst00000598273 | sg00000178980 | selenow-206 | 19 | 47778933 | 47784681 | + | lnc_RNA | retained_intron |
| 330714 | enst00000595509 | sg00000178980 | selenow-203 | 19 | 47779239 | 47780895 | + | lnc_RNA | processed_transcript |
| 331863 | enst00000598956 | sg00000178980 | selenow-207 | 19 | 47780388 | 47784648 | + | lnc_RNA | retained_intron |
| 332231 | enst00000598083 | sg00000178980 | selenow-205 | 19 | 47780756 | 47781408 | + | lnc_RNA | retained_intron |
| 332290 | enst00000601937 | sg00000178980 | selenow-214 | 19 | 47780815 | 47784686 | + | lnc_RNA | retained_intron |
| 332555 | enst00000599627 | sg00000178980 | selenow-210 | 19 | 47781080 | 47784399 | + | lnc_RNA | retained_intron |
| -333221 | enst00000253048 | sg00000130749 | zc3h4-201 | 19 | 47064187 | 47113776 | - | mRNA | protein_coding |
| -333556 | enst00000594526 | sg00000142230 | sae1-206 | 19 | 47113441 | 47153000 | + | mRNA | protein_coding |
| 333655 | enst00000602163 | sg00000178980 | selenow-215 | 19 | 47782180 | 47784682 | + | lnc_RNA | retained_intron |
| -333723 | enst00000594144 | sg00000142230 | sae1-205 | 19 | 47113274 | 47169853 | + | mRNA | protein_coding |
| -334750 | enst00000597069 | sg00000130749 | zc3h4-204 | 19 | 47090019 | 47112247 | - | lnc_RNA | processed_transcript |
| -334768 | enst00000594019 | sg00000130749 | zc3h4-202 | 19 | 47064859 | 47112229 | - | lnc_RNA | processed_transcript |
| 346125 | enst00000604064 | sg00000271150 | ac008745.1-201 | 19 | 47794650 | 47794920 | + | pseudogenic_transcript | processed_pseudogene |
| 346365 | enst00000495605 | sg00000213035 | rpl23ap80-201 | 19 | 47794467 | 47794890 | - | pseudogenic_transcript | processed_pseudogene |
| -352510 | enst00000595341 | sg00000130749 | zc3h4-203 | 19 | 47093749 | 47094487 | - | lnc_RNA | retained_intron |
| 355033 | enst00000543508 | sg00000178928 | tprx1-203 | 19 | 47801480 | 47803558 | - | mRNA | protein_coding |
| 355164 | enst00000322175 | sg00000178928 | tprx1-201 | 19 | 47801243 | 47803689 | - | mRNA | protein_coding |
| -361642 | enst00000601973 | sg00000130749 | zc3h4-205 | 19 | 47064192 | 47085355 | - | mRNA | protein_coding |
| 370526 | enst00000535759 | sg00000178928 | tprx1-202 | 19 | 47801243 | 47819051 | - | mRNA | protein_coding |
| 371254 | enst00000566686 | sg00000105392 | crx-204 | 19 | 47819779 | 47836314 | + | mRNA | protein_coding |
| 372019 | enst00000604324 | sg00000105392 | crx-206 | 19 | 47820544 | 47822010 | + | lnc_RNA | retained_intron |
| 373382 | enst00000539067 | sg00000105392 | crx-202 | 19 | 47821907 | 47843323 | + | mRNA | protein_coding |
| 373409 | enst00000556527 | sg00000105392 | crx-203 | 19 | 47821934 | 47836329 | + | lnc_RNA | processed_transcript |
| 373412 | enst00000221996 | sg00000105392 | crx-201 | 19 | 47821937 | 47843324 | + | mRNA | protein_coding |
| 373439 | enst00000613299 | sg00000105392 | crx-207 | 19 | 47821964 | 47843330 | + | mRNA | protein_coding |
| 392185 | enst00000602001 | sg00000105392 | crx-205 | 19 | 47840710 | 47843109 | + | lnc_RNA | processed_transcript |
| -398373 | enst00000253047 | sg00000130748 | tmem160-201 | 19 | 47045909 | 47048624 | - | mRNA | protein_coding |
| -411108 | enst00000600352 | sg00000130751 | npas1-205 | 19 | 47035889 | 47040733 | + | lnc_RNA | retained_intron |
| 411588 | enst00000535362 | sg00000259009 | tprx2p-201 | 19 | 47860113 | 47861512 | + | pseudogenic_transcript | unprocessed_pseudogene |
| -411647 | enst00000594257 | sg00000130751 | npas1-203 | 19 | 47035350 | 47042877 | + | mRNA | nonsense_mediated_decay |
| -411649 | enst00000594670 | sg00000130751 | npas1-204 | 19 | 47035348 | 47041125 | + | mRNA | protein_coding |
| -411665 | enst00000601169 | sg00000130751 | npas1-206 | 19 | 47035332 | 47040758 | + | lnc_RNA | retained_intron |
| -411668 | enst00000439365 | sg00000130751 | npas1-201 | 19 | 47035329 | 47045758 | + | mRNA | protein_coding |
| 415974 | enst00000555406 | sg00000259108 | linc01595-201 | 19 | 47863483 | 47864499 | - | lnc_RNA | lncrna |
| 416816 | enst00000556021 | sg00000259108 | linc01595-202 | 19 | 47863616 | 47865341 | - | lnc_RNA | lncrna |
| 416934 | enst00000660899 | sg00000259108 | linc01595-203 | 19 | 47863409 | 47865459 | - | lnc_RNA | lncrna |
| -426111 | enst00000449844 | sg00000130751 | npas1-202 | 19 | 47020886 | 47045759 | + | mRNA | protein_coding |
| -427148 | enst00000602189 | sg00000130751 | npas1-207 | 19 | 47019849 | 47045727 | + | mRNA | protein_coding |
| -427160 | enst00000602212 | sg00000130751 | npas1-208 | 19 | 47019837 | 47045775 | + | mRNA | protein_coding |
| 437790 | enst00000222002 | sg00000105398 | sult2a1-201 | 19 | 47870467 | 47886315 | - | mRNA | protein_coding |
| -447899 | enst00000599284 | sg00000160007 | arhgap35-205 | 19 | 46999098 | 47000949 | + | lnc_RNA | retained_intron |
| -447912 | enst00000598548 | sg00000160007 | arhgap35-204 | 19 | 46999085 | 46999815 | + | lnc_RNA | processed_transcript |
| -457413 | enst00000596593 | sg00000160007 | arhgap35-203 | 19 | 46989584 | 46997750 | + | lnc_RNA | processed_transcript |
Source file: /hps/research1/birney/users/adrien/analyses/cancer_DNA_promethion/run_1_2_3_4/DNA_pipeline_2/results/methylation/pycometh_meth_comp_CGI_3/out.tsv.gz
MD5 hash: 9aa0e3f69cb4e12345c3758eb68a5efc