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CpG interval report generated on 20/05/20 with pycoMeth 0.4.6
Interval details
| pvalue rank | chromosome | start | end | length | number of samples | number of CpGs | pvalue | adjusted pvalue |
|---|---|---|---|---|---|---|---|---|
| #91 | 17 | 45428957 | 45431152 | 2195 | 3 | 60 | 2.98904e-18 | 3.27635e-16 |
Methylation log-likelihood ratio by CpG position
Distribution of CpG methylation log-likelihood ratio by sample
Closest transcripts TSS
| distance to tss | transcript id | gene id | transcript name | chromosome | start | end | strand | feature type | transcript biotype |
|---|---|---|---|---|---|---|---|---|---|
| 0 | enst00000532891 | sg00000159314 | arhgap27-214 | 17 | 45395456 | 45430279 | - | mRNA | protein_coding |
| 0 | enst00000428638 | sg00000159314 | arhgap27-203 | 17 | 45393902 | 45430297 | - | mRNA | protein_coding |
| 1197 | enst00000531735 | sg00000159314 | arhgap27-211 | 17 | 45393909 | 45432349 | - | lnc_RNA | retained_intron |
| 1701 | enst00000527678 | sg00000159314 | arhgap27-206 | 17 | 45404475 | 45432853 | - | lnc_RNA | retained_intron |
| 1764 | enst00000290470 | sg00000159314 | arhgap27-201 | 17 | 45429353 | 45432916 | - | mRNA | protein_coding |
| 3269 | enst00000528273 | sg00000159314 | arhgap27-207 | 17 | 45429352 | 45434421 | - | mRNA | protein_coding |
| -3326 | enst00000376922 | sg00000159314 | arhgap27-202 | 17 | 45393909 | 45425631 | - | mRNA | protein_coding |
| -3341 | enst00000524404 | sg00000159314 | arhgap27-204 | 17 | 45402714 | 45425616 | - | mRNA | nonsense_mediated_decay |
| 9221 | enst00000585506 | sg00000225190 | plekhm1-213 | 17 | 45439514 | 45440373 | - | lnc_RNA | retained_intron |
| 9907 | enst00000579131 | sg00000225190 | plekhm1-203 | 17 | 45437916 | 45441059 | - | lnc_RNA | processed_transcript |
| 14355 | enst00000590991 | sg00000225190 | plekhm1-217 | 17 | 45439546 | 45445507 | - | mRNA | nonsense_mediated_decay |
| 14381 | enst00000591580 | sg00000225190 | plekhm1-218 | 17 | 45437549 | 45445533 | - | mRNA | protein_coding |
| 15121 | enst00000580404 | sg00000225190 | plekhm1-206 | 17 | 45435903 | 45446273 | - | lnc_RNA | processed_transcript |
| 16960 | enst00000583150 | sg00000225190 | plekhm1-211 | 17 | 45439615 | 45448112 | - | lnc_RNA | processed_transcript |
| -18531 | enst00000528677 | sg00000159314 | arhgap27-209 | 17 | 45404445 | 45410426 | - | mRNA | protein_coding |
| -18533 | enst00000532038 | sg00000159314 | arhgap27-212 | 17 | 45393902 | 45410424 | - | mRNA | protein_coding |
| -18571 | enst00000529357 | sg00000159314 | arhgap27-210 | 17 | 45397514 | 45410386 | - | lnc_RNA | retained_intron |
| -18572 | enst00000579357 | sg00000159314 | arhgap27-215 | 17 | 45407533 | 45410385 | - | lnc_RNA | retained_intron |
| 21692 | enst00000433601 | sg00000236234 | ac091132.2-201 | 17 | 45452844 | 45464065 | + | lnc_RNA | lncrna |
| -23023 | enst00000528384 | sg00000159314 | arhgap27-208 | 17 | 45394943 | 45405934 | - | mRNA | protein_coding |
| 23619 | enst00000582035 | sg00000225190 | plekhm1-209 | 17 | 45452938 | 45454771 | - | lnc_RNA | retained_intron |
| -24255 | enst00000532667 | sg00000159314 | arhgap27-213 | 17 | 45402774 | 45404702 | - | lnc_RNA | retained_intron |
| -24771 | enst00000526484 | sg00000159314 | arhgap27-205 | 17 | 45397965 | 45404186 | - | lnc_RNA | retained_intron |
| -25289 | enst00000582826 | sg00000159314 | arhgap27-218 | 17 | 45397205 | 45403668 | - | lnc_RNA | processed_transcript |
| 29280 | enst00000580205 | sg00000225190 | plekhm1-205 | 17 | 45452938 | 45460432 | - | lnc_RNA | processed_transcript |
| -32025 | enst00000592389 | sg00000267344 | ac003070.1-201 | 17 | 45396932 | 45397477 | + | lnc_RNA | lncrna |
| -32187 | enst00000581638 | sg00000159314 | arhgap27-216 | 17 | 45396063 | 45396770 | - | lnc_RNA | retained_intron |
| -32794 | enst00000581991 | sg00000159314 | arhgap27-217 | 17 | 45395455 | 45396163 | - | lnc_RNA | retained_intron |
| -33049 | enst00000590026 | sg00000159314 | arhgap27-219 | 17 | 45395427 | 45395908 | - | lnc_RNA | retained_intron |
| 44283 | enst00000636800 | sg00000284055 | mir4315-1-201 | 17 | 45475363 | 45475435 | - | miRNA | mirna |
| 51373 | enst00000581932 | sg00000225190 | plekhm1-208 | 17 | 45477074 | 45482525 | - | lnc_RNA | retained_intron |
| 56706 | enst00000446609 | sg00000225190 | plekhm1-202 | 17 | 45440163 | 45487858 | - | mRNA | nonsense_mediated_decay |
| 56710 | enst00000582119 | sg00000225190 | plekhm1-210 | 17 | 45468246 | 45487862 | - | lnc_RNA | processed_transcript |
| -56900 | enst00000589730 | sg00000267446 | ac003070.2-201 | 17 | 45371402 | 45372057 | - | lnc_RNA | lncrna |
| 59569 | enst00000430334 | sg00000225190 | plekhm1-201 | 17 | 45435900 | 45490721 | - | mRNA | protein_coding |
| 59576 | enst00000579197 | sg00000225190 | plekhm1-204 | 17 | 45435904 | 45490728 | - | mRNA | nonsense_mediated_decay |
| 59577 | enst00000581448 | sg00000225190 | plekhm1-207 | 17 | 45437471 | 45490729 | - | mRNA | nonsense_mediated_decay |
| 59586 | enst00000584420 | sg00000225190 | plekhm1-212 | 17 | 45475211 | 45490738 | - | mRNA | protein_coding |
| 59589 | enst00000589780 | sg00000225190 | plekhm1-216 | 17 | 45475366 | 45490741 | - | mRNA | protein_coding |
| 59589 | enst00000586084 | sg00000225190 | plekhm1-214 | 17 | 45475696 | 45490741 | - | mRNA | nonsense_mediated_decay |
| 59597 | enst00000586562 | sg00000225190 | plekhm1-215 | 17 | 45475597 | 45490749 | - | lnc_RNA | processed_transcript |
| 84004 | enst00000579913 | sg00000214425 | lrrc37a4p-201 | 17 | 45506741 | 45515156 | - | lnc_RNA | processed_transcript |
| 95594 | enst00000585071 | sg00000278770 | ac091132.6-201 | 17 | 45526466 | 45526746 | - | ncRNA | misc_rna |
| 100425 | enst00000587960 | sg00000266918 | ac091132.3-201 | 17 | 45531577 | 45533838 | + | unconfirmed_transcript | tec |
| -101460 | enst00000650192 | sg00000285757 | ac003070.7-201 | 17 | 45327366 | 45327497 | - | pseudogenic_transcript | rrna_pseudogene |
| -101460 | enst00000363083 | sg00000199953 | rna5sp443-201 | 17 | 45327366 | 45327497 | - | rRNA | rrna |
| 102811 | enst00000588189 | sg00000131484 | ac091132.1-201 | 17 | 45533963 | 45534710 | + | lnc_RNA | lncrna |
| -111928 | enst00000617331 | sg00000006062 | map3k14-205 | 17 | 45289268 | 45317029 | - | mRNA | protein_coding |
| -111937 | enst00000344686 | sg00000006062 | map3k14-201 | 17 | 45263119 | 45317020 | - | mRNA | protein_coding |
| 114652 | enst00000590995 | sg00000267198 | ac091132.4-201 | 17 | 45545804 | 45549481 | + | lnc_RNA | lncrna |
| 114653 | enst00000587078 | sg00000267198 | ac091132.4-202 | 17 | 45545805 | 45558767 | + | lnc_RNA | lncrna |
| 114725 | enst00000591950 | sg00000267198 | ac091132.4-203 | 17 | 45545877 | 45554370 | + | lnc_RNA | lncrna |
| 114748 | enst00000586348 | sg00000267198 | ac091132.4-204 | 17 | 45545900 | 45563230 | + | lnc_RNA | lncrna |
| 119183 | enst00000581296 | sg00000214425 | lrrc37a4p-202 | 17 | 45508109 | 45550335 | - | pseudogenic_transcript | transcribed_unprocessed_pseudogene |
| 120385 | enst00000661058 | sg00000214425 | lrrc37a4p-203 | 17 | 45518636 | 45551537 | - | lnc_RNA | processed_transcript |
| 121703 | enst00000585761 | sg00000267198 | ac091132.4-205 | 17 | 45552855 | 45553805 | + | lnc_RNA | lncrna |
| 127586 | enst00000586411 | sg00000267246 | ac091132.5-201 | 17 | 45549781 | 45558738 | - | lnc_RNA | lncrna |
| 127918 | enst00000579701 | sg00000266504 | rdm1p1-201 | 17 | 45553710 | 45559070 | - | pseudogenic_transcript | transcribed_unprocessed_pseudogene |
| -137981 | enst00000376926 | sg00000006062 | map3k14-202 | 17 | 45263128 | 45290976 | - | mRNA | protein_coding |
| 154719 | enst00000580842 | sg00000264070 | dnd1p1-201 | 17 | 45585871 | 45586929 | + | pseudogenic_transcript | processed_pseudogene |
| -154991 | enst00000592267 | sg00000006062 | map3k14-204 | 17 | 45263135 | 45273966 | - | lnc_RNA | retained_intron |
| -155355 | enst00000586644 | sg00000006062 | map3k14-203 | 17 | 45263151 | 45273602 | - | lnc_RNA | retained_intron |
| 157227 | enst00000650501 | sg00000285668 | ac126544.2-201 | 17 | 45586452 | 45588379 | - | lnc_RNA | lncrna |
| 161469 | enst00000625174 | sg00000280022 | ac126544.1-201 | 17 | 45592621 | 45593369 | + | unconfirmed_transcript | tec |
| -166753 | enst00000663374 | sg00000267278 | map3k14-as1-213 | 17 | 45262204 | 45268259 | + | lnc_RNA | lncrna |
| -166766 | enst00000585351 | sg00000267278 | map3k14-as1-202 | 17 | 45262191 | 45268263 | + | lnc_RNA | lncrna |
| -166863 | enst00000331780 | sg00000184361 | spata32-201 | 17 | 45254393 | 45262094 | - | mRNA | protein_coding |
| -166863 | enst00000586359 | sg00000184361 | spata32-202 | 17 | 45254393 | 45262094 | - | mRNA | nonsense_mediated_decay |
| -166867 | enst00000588866 | sg00000184361 | spata32-203 | 17 | 45254393 | 45262090 | - | mRNA | nonsense_mediated_decay |
| -166877 | enst00000586450 | sg00000267278 | map3k14-as1-204 | 17 | 45262080 | 45269824 | + | lnc_RNA | lncrna |
| -167180 | enst00000585780 | sg00000267278 | map3k14-as1-203 | 17 | 45261777 | 45268059 | + | lnc_RNA | lncrna |
| 171188 | enst00000580257 | sg00000263503 | mapk8ip1p2-201 | 17 | 45600869 | 45602340 | - | pseudogenic_transcript | processed_pseudogene |
| -173933 | enst00000588160 | sg00000267278 | map3k14-as1-205 | 17 | 45255024 | 45267490 | + | lnc_RNA | lncrna |
| -173945 | enst00000588698 | sg00000267278 | map3k14-as1-207 | 17 | 45255012 | 45268263 | + | lnc_RNA | lncrna |
| 177419 | enst00000393490 | sg00000204652 | rps26p8-201 | 17 | 45608571 | 45608918 | + | pseudogenic_transcript | processed_pseudogene |
| -177828 | enst00000642422 | sg00000233483 | ac008105.2-203 | 17 | 45247381 | 45251129 | - | pseudogenic_transcript | transcribed_unitary_pseudogene |
| -179600 | enst00000645108 | sg00000233483 | ac008105.2-205 | 17 | 45248251 | 45249357 | - | lnc_RNA | processed_transcript |
| -180121 | enst00000591361 | sg00000233483 | ac008105.2-204 | 17 | 45247551 | 45248836 | - | lnc_RNA | processed_transcript |
| -180618 | enst00000420431 | sg00000233483 | ac008105.2-201 | 17 | 45245186 | 45248339 | - | lnc_RNA | processed_transcript |
| -181003 | enst00000592422 | sg00000267278 | map3k14-as1-210 | 17 | 45247954 | 45268393 | + | lnc_RNA | lncrna |
| -181003 | enst00000585346 | sg00000267278 | map3k14-as1-201 | 17 | 45247954 | 45267466 | + | lnc_RNA | lncrna |
| -181021 | enst00000588504 | sg00000267278 | map3k14-as1-206 | 17 | 45247936 | 45267588 | + | lnc_RNA | lncrna |
| -181021 | enst00000590100 | sg00000267278 | map3k14-as1-208 | 17 | 45247936 | 45269814 | + | lnc_RNA | lncrna |
| -181022 | enst00000655903 | sg00000267278 | map3k14-as1-211 | 17 | 45247935 | 45269814 | + | lnc_RNA | lncrna |
| -181032 | enst00000591263 | sg00000267278 | map3k14-as1-209 | 17 | 45247925 | 45267490 | + | lnc_RNA | lncrna |
| -181041 | enst00000657572 | sg00000267278 | map3k14-as1-212 | 17 | 45247916 | 45269814 | + | lnc_RNA | lncrna |
| -181114 | enst00000589518 | sg00000233483 | ac008105.2-202 | 17 | 45247267 | 45247843 | - | lnc_RNA | processed_transcript |
| -183631 | enst00000586092 | sg00000184922 | fmnl1-204 | 17 | 45245326 | 45246475 | + | mRNA | protein_coding |
| -183633 | enst00000589911 | sg00000184922 | fmnl1-208 | 17 | 45245324 | 45246553 | + | mRNA | protein_coding |
| -185839 | enst00000586643 | sg00000184922 | fmnl1-205 | 17 | 45243118 | 45246604 | + | mRNA | protein_coding |
| -187223 | enst00000587534 | sg00000233175 | ac008105.1-201 | 17 | 45238028 | 45241734 | - | lnc_RNA | lncrna |
| -187760 | enst00000393507 | sg00000233175 | ac008105.1-202 | 17 | 45240315 | 45241197 | - | lnc_RNA | lncrna |
| -187882 | enst00000587489 | sg00000184922 | fmnl1-206 | 17 | 45241075 | 45247318 | + | mRNA | protein_coding |
| 189176 | enst00000585118 | sg00000204650 | linc02210-208 | 17 | 45620328 | 45636394 | + | lnc_RNA | processed_transcript |
| 189188 | enst00000591271 | sg00000204650 | linc02210-213 | 17 | 45620340 | 45655156 | + | lnc_RNA | processed_transcript |
| 189190 | enst00000582491 | sg00000204650 | linc02210-206 | 17 | 45620342 | 45630456 | + | lnc_RNA | retained_intron |
| 189192 | enst00000634540 | sg00000263715 | linc02210-crhr1-202 | 17 | 45620344 | 45835826 | + | mRNA | protein_coding |
| 189194 | enst00000585122 | sg00000204650 | linc02210-209 | 17 | 45620346 | 45636473 | + | lnc_RNA | processed_transcript |
| 189194 | enst00000583740 | sg00000204650 | linc02210-207 | 17 | 45620346 | 45630605 | + | lnc_RNA | processed_transcript |
| 189458 | enst00000455565 | sg00000204650 | linc02210-202 | 17 | 45620610 | 45637959 | + | lnc_RNA | processed_transcript |
| 190756 | enst00000580220 | sg00000204650 | linc02210-204 | 17 | 45621908 | 45636344 | + | lnc_RNA | processed_transcript |
| 190774 | enst00000587305 | sg00000263715 | linc02210-crhr1-201 | 17 | 45621926 | 45816487 | + | lnc_RNA | processed_transcript |
| -194877 | enst00000591434 | sg00000184922 | fmnl1-209 | 17 | 45234080 | 45236594 | + | lnc_RNA | retained_intron |
| -195073 | enst00000587856 | sg00000184922 | fmnl1-207 | 17 | 45233884 | 45247319 | + | lnc_RNA | retained_intron |
| -196095 | enst00000592527 | sg00000184922 | fmnl1-212 | 17 | 45232862 | 45233953 | + | lnc_RNA | retained_intron |
| -197530 | enst00000592006 | sg00000184922 | fmnl1-210 | 17 | 45231427 | 45239054 | + | lnc_RNA | processed_transcript |
| -198288 | enst00000585852 | sg00000184922 | fmnl1-203 | 17 | 45230669 | 45234687 | + | lnc_RNA | retained_intron |
| 201897 | enst00000444561 | sg00000204650 | linc02210-201 | 17 | 45633049 | 45636444 | + | pseudogenic_transcript | transcribed_unitary_pseudogene |
| 206049 | enst00000586362 | sg00000204650 | linc02210-211 | 17 | 45637201 | 45646230 | + | lnc_RNA | processed_transcript |
| -206735 | enst00000591365 | sg00000267121 | ac008105.3-203 | 17 | 45219350 | 45222222 | - | lnc_RNA | lncrna |
| -206880 | enst00000328118 | sg00000184922 | fmnl1-201 | 17 | 45222077 | 45246959 | + | mRNA | protein_coding |
| -207072 | enst00000331495 | sg00000184922 | fmnl1-202 | 17 | 45221885 | 45247318 | + | mRNA | protein_coding |
| -207192 | enst00000586376 | sg00000267121 | ac008105.3-201 | 17 | 45190931 | 45221765 | - | lnc_RNA | lncrna |
| -207192 | enst00000590495 | sg00000267121 | ac008105.3-205 | 17 | 45220267 | 45221765 | - | lnc_RNA | lncrna |
| -207513 | enst00000592415 | sg00000184922 | fmnl1-211 | 17 | 45221444 | 45222097 | + | lnc_RNA | processed_transcript |
| -207666 | enst00000670229 | sg00000267121 | ac008105.3-206 | 17 | 45218692 | 45221291 | - | lnc_RNA | lncrna |
| 207823 | enst00000585677 | sg00000204650 | linc02210-210 | 17 | 45638975 | 45646008 | + | lnc_RNA | processed_transcript |
| 207823 | enst00000578000 | sg00000204650 | linc02210-203 | 17 | 45638975 | 45642300 | + | lnc_RNA | processed_transcript |
| 208285 | enst00000592428 | sg00000204650 | linc02210-214 | 17 | 45639437 | 45646232 | + | lnc_RNA | processed_transcript |
| -208532 | enst00000585471 | sg00000267121 | ac008105.3-202 | 17 | 45218256 | 45220425 | - | lnc_RNA | lncrna |
| -208625 | enst00000590522 | sg00000267121 | ac008105.3-204 | 17 | 45219735 | 45220332 | - | lnc_RNA | lncrna |
| 209210 | enst00000580655 | sg00000204650 | linc02210-205 | 17 | 45640362 | 45642303 | + | lnc_RNA | retained_intron |
| 214519 | enst00000589868 | sg00000204650 | linc02210-212 | 17 | 45645671 | 45648216 | + | lnc_RNA | retained_intron |
| -257373 | enst00000589451 | sg00000267288 | ac138150.2-202 | 17 | 45170682 | 45171584 | - | lnc_RNA | lncrna |
| -257472 | enst00000589796 | sg00000267288 | ac138150.2-201 | 17 | 45168800 | 45171485 | - | lnc_RNA | lncrna |
| -267040 | enst00000592695 | sg00000168517 | hexim2-207 | 17 | 45161917 | 45170035 | + | mRNA | protein_coding |
| -267061 | enst00000591070 | sg00000168517 | hexim2-205 | 17 | 45161896 | 45169185 | + | mRNA | protein_coding |
| -267062 | enst00000591576 | sg00000168517 | hexim2-206 | 17 | 45161895 | 45170035 | + | mRNA | protein_coding |
| -267112 | enst00000589230 | sg00000168517 | hexim2-204 | 17 | 45161845 | 45169365 | + | mRNA | protein_coding |
| -267447 | enst00000589950 | sg00000224505 | ac138150.1-201 | 17 | 45150400 | 45161510 | - | lnc_RNA | lncrna |
| -267863 | enst00000586681 | sg00000168517 | hexim2-203 | 17 | 45161094 | 45169380 | + | mRNA | protein_coding |
| -267879 | enst00000593138 | sg00000168517 | hexim2-208 | 17 | 45161078 | 45169314 | + | mRNA | protein_coding |
| -268227 | enst00000585340 | sg00000168517 | hexim2-202 | 17 | 45160730 | 45169493 | + | mRNA | protein_coding |
| -268257 | enst00000307275 | sg00000168517 | hexim2-201 | 17 | 45160700 | 45170040 | + | mRNA | protein_coding |
| -269502 | enst00000452741 | sg00000224505 | ac138150.1-202 | 17 | 45150618 | 45159455 | - | lnc_RNA | lncrna |
| -280455 | enst00000332499 | sg00000186834 | hexim1-201 | 17 | 45148502 | 45152101 | + | mRNA | protein_coding |
| -280487 | enst00000612013 | sg00000276728 | ac142472.1-201 | 17 | 45146730 | 45148470 | - | lnc_RNA | lncrna |
| -292756 | enst00000591136 | sg00000181513 | acbd4-213 | 17 | 45136201 | 45138544 | + | lnc_RNA | processed_transcript |
| -292849 | enst00000589798 | sg00000181513 | acbd4-211 | 17 | 45136108 | 45137835 | + | mRNA | nonsense_mediated_decay |
| -292861 | enst00000589752 | sg00000181513 | acbd4-210 | 17 | 45136096 | 45137636 | + | lnc_RNA | retained_intron |
| -293249 | enst00000321854 | sg00000181513 | acbd4-201 | 17 | 45135708 | 45144176 | + | mRNA | protein_coding |
| -293263 | enst00000376955 | sg00000181513 | acbd4-202 | 17 | 45135694 | 45142959 | + | mRNA | protein_coding |
| -293267 | enst00000592162 | sg00000181513 | acbd4-215 | 17 | 45135690 | 45144176 | + | mRNA | protein_coding |
| -293269 | enst00000590289 | sg00000181513 | acbd4-212 | 17 | 45135688 | 45137454 | + | lnc_RNA | retained_intron |
| -293270 | enst00000398322 | sg00000181513 | acbd4-203 | 17 | 45135687 | 45144181 | + | mRNA | protein_coding |
| -293308 | enst00000585553 | sg00000181513 | acbd4-205 | 17 | 45135649 | 45144176 | + | lnc_RNA | retained_intron |
| -293310 | enst00000586346 | sg00000181513 | acbd4-207 | 17 | 45135647 | 45143850 | + | mRNA | protein_coding |
| -295603 | enst00000590644 | sg00000161714 | plcd3-208 | 17 | 45120355 | 45133354 | - | mRNA | protein_coding |
| -295744 | enst00000538093 | sg00000161714 | plcd3-201 | 17 | 45120436 | 45133213 | - | mRNA | protein_coding |
| -296326 | enst00000591859 | sg00000181513 | acbd4-214 | 17 | 45132631 | 45144176 | + | mRNA | protein_coding |
| -296328 | enst00000586279 | sg00000181513 | acbd4-206 | 17 | 45132629 | 45135704 | + | lnc_RNA | processed_transcript |
| -296352 | enst00000587111 | sg00000181513 | acbd4-208 | 17 | 45132605 | 45135949 | + | lnc_RNA | processed_transcript |
| -296357 | enst00000431281 | sg00000181513 | acbd4-204 | 17 | 45132600 | 45144172 | + | mRNA | protein_coding |
| -296357 | enst00000587976 | sg00000181513 | acbd4-209 | 17 | 45132600 | 45135865 | + | lnc_RNA | processed_transcript |
| -296357 | enst00000619916 | sg00000181513 | acbd4-216 | 17 | 45132600 | 45142610 | + | mRNA | protein_coding |
| -296439 | enst00000544446 | sg00000161714 | plcd3-206 | 17 | 45121236 | 45132518 | - | lnc_RNA | processed_transcript |
| -296442 | enst00000619929 | sg00000161714 | plcd3-212 | 17 | 45108959 | 45132515 | - | mRNA | protein_coding |
| 301825 | enst00000578936 | sg00000265547 | ac217774.1-201 | 17 | 45731703 | 45732977 | - | lnc_RNA | lncrna |
| 303517 | enst00000580347 | sg00000265964 | ac217774.2-201 | 17 | 45733353 | 45734669 | - | lnc_RNA | lncrna |
| -309868 | enst00000546350 | sg00000161714 | plcd3-207 | 17 | 45118056 | 45119089 | - | lnc_RNA | retained_intron |
| -309945 | enst00000538988 | sg00000161714 | plcd3-202 | 17 | 45118372 | 45119012 | - | lnc_RNA | processed_transcript |
| -310035 | enst00000542173 | sg00000161714 | plcd3-204 | 17 | 45118254 | 45118922 | - | lnc_RNA | retained_intron |
| -312246 | enst00000611986 | sg00000161714 | plcd3-209 | 17 | 45114250 | 45116711 | - | lnc_RNA | processed_transcript |
| -313579 | enst00000615898 | sg00000161714 | plcd3-210 | 17 | 45113572 | 45115378 | - | lnc_RNA | processed_transcript |
| -313614 | enst00000618022 | sg00000161714 | plcd3-211 | 17 | 45113478 | 45115343 | - | lnc_RNA | retained_intron |
| -313829 | enst00000543623 | sg00000161714 | plcd3-205 | 17 | 45112423 | 45115128 | - | lnc_RNA | processed_transcript |
| -314524 | enst00000611997 | sg00000277249 | mir6784-201 | 17 | 45114367 | 45114433 | - | miRNA | mirna |
| -315409 | enst00000539433 | sg00000161714 | plcd3-203 | 17 | 45112303 | 45113548 | - | mRNA | protein_coding |
| -323192 | enst00000587670 | sg00000136448 | nmt1-206 | 17 | 45105765 | 45108134 | + | lnc_RNA | processed_transcript |
| -323313 | enst00000587120 | sg00000136448 | nmt1-205 | 17 | 45105644 | 45109016 | + | lnc_RNA | processed_transcript |
| -324340 | enst00000591931 | sg00000136448 | nmt1-211 | 17 | 45104617 | 45105986 | + | lnc_RNA | retained_intron |
| -325994 | enst00000587014 | sg00000136448 | nmt1-204 | 17 | 45102963 | 45104322 | + | lnc_RNA | retained_intron |
| -331829 | enst00000590310 | sg00000136448 | nmt1-210 | 17 | 45097128 | 45099820 | + | lnc_RNA | retained_intron |
| -335326 | enst00000588455 | sg00000136448 | nmt1-207 | 17 | 45093631 | 45099436 | + | lnc_RNA | retained_intron |
| 353128 | enst00000339069 | sg00000120088 | crhr1-203 | 17 | 45784280 | 45835827 | + | mRNA | protein_coding |
| 353128 | enst00000619154 | sg00000120088 | crhr1-214 | 17 | 45784280 | 45835827 | + | mRNA | protein_coding |
| 353128 | enst00000293493 | sg00000120088 | crhr1-201 | 17 | 45784280 | 45835827 | + | mRNA | protein_coding |
| 353155 | enst00000347197 | sg00000120088 | crhr1-204 | 17 | 45784307 | 45835825 | + | mRNA | nonsense_mediated_decay |
| 353168 | enst00000314537 | sg00000120088 | crhr1-202 | 17 | 45784320 | 45835826 | + | mRNA | protein_coding |
| 353375 | enst00000352855 | sg00000120088 | crhr1-205 | 17 | 45784527 | 45834764 | + | mRNA | protein_coding |
| 353393 | enst00000577353 | sg00000120088 | crhr1-208 | 17 | 45784545 | 45834764 | + | mRNA | protein_coding |
| 353393 | enst00000398285 | sg00000120088 | crhr1-206 | 17 | 45784545 | 45835828 | + | mRNA | protein_coding |
| 353417 | enst00000582766 | sg00000120088 | crhr1-212 | 17 | 45784569 | 45830940 | + | lnc_RNA | retained_intron |
| -357515 | enst00000364018 | sg00000200888 | ac116493.1-201 | 17 | 45071442 | 45071543 | + | ncRNA | misc_rna |
| -367278 | enst00000592654 | sg00000136448 | nmt1-212 | 17 | 45061679 | 45093756 | + | mRNA | protein_coding |
| -367623 | enst00000590114 | sg00000136448 | nmt1-209 | 17 | 45061334 | 45098455 | + | lnc_RNA | processed_transcript |
| -367623 | enst00000585561 | sg00000136448 | nmt1-203 | 17 | 45061334 | 45097244 | + | mRNA | nonsense_mediated_decay |
| -367637 | enst00000543908 | sg00000136448 | nmt1-202 | 17 | 45061320 | 45098843 | + | mRNA | nonsense_mediated_decay |
| -367640 | enst00000258960 | sg00000136448 | nmt1-201 | 17 | 45061317 | 45109016 | + | mRNA | protein_coding |
| -367651 | enst00000588975 | sg00000136448 | nmt1-208 | 17 | 45061306 | 45086535 | + | lnc_RNA | processed_transcript |
| -367848 | enst00000310604 | sg00000172992 | dcakd-201 | 17 | 45023346 | 45061109 | - | mRNA | protein_coding |
| -367939 | enst00000342350 | sg00000172992 | dcakd-202 | 17 | 45023344 | 45061018 | - | mRNA | protein_coding |
| 375922 | enst00000580955 | sg00000120088 | crhr1-210 | 17 | 45807074 | 45830125 | + | mRNA | nonsense_mediated_decay |
| -377296 | enst00000588295 | sg00000172992 | dcakd-204 | 17 | 45033855 | 45051661 | - | lnc_RNA | processed_transcript |
| -377325 | enst00000651974 | sg00000172992 | dcakd-209 | 17 | 45023344 | 45051632 | - | mRNA | protein_coding |
| -377338 | enst00000593094 | sg00000172992 | dcakd-207 | 17 | 45024502 | 45051619 | - | mRNA | protein_coding |
| -377347 | enst00000592782 | sg00000136448 | nmt1-213 | 17 | 45051610 | 45109016 | + | mRNA | protein_coding |
| -377347 | enst00000588499 | sg00000172992 | dcakd-205 | 17 | 45024311 | 45051610 | - | mRNA | protein_coding |
| -377440 | enst00000614054 | sg00000172992 | dcakd-208 | 17 | 45023346 | 45051517 | - | mRNA | protein_coding |
| 385406 | enst00000583888 | sg00000120088 | crhr1-213 | 17 | 45816558 | 45834841 | + | mRNA | nonsense_mediated_decay |
| -393816 | enst00000452796 | sg00000172992 | dcakd-203 | 17 | 45023340 | 45035141 | - | mRNA | protein_coding |
| -394068 | enst00000592902 | sg00000172992 | dcakd-206 | 17 | 45032044 | 45034889 | - | lnc_RNA | processed_transcript |
| 399248 | enst00000581479 | sg00000120088 | crhr1-211 | 17 | 45830400 | 45833202 | + | lnc_RNA | retained_intron |
| 401986 | enst00000535778 | sg00000120088 | crhr1-207 | 17 | 45833138 | 45835644 | + | mRNA | nonsense_mediated_decay |
| 401986 | enst00000580876 | sg00000120088 | crhr1-209 | 17 | 45833138 | 45834645 | + | mRNA | protein_coding |
| 413605 | enst00000581125 | sg00000264589 | mapt-as1-203 | 17 | 45843986 | 45844757 | - | lnc_RNA | lncrna |
| 413729 | enst00000329196 | sg00000185294 | sppl2c-201 | 17 | 45844881 | 45847067 | + | mRNA | protein_coding |
| -446443 | enst00000593177 | sg00000267788 | ac015936.2-201 | 17 | 44982514 | 44982772 | + | lnc_RNA | lncrna |
| -460654 | enst00000253407 | sg00000131094 | c1ql1-201 | 17 | 44959693 | 44968303 | - | mRNA | protein_coding |
| 463230 | enst00000340799 | sg00000186868 | mapt-203 | 17 | 45894382 | 46028334 | + | mRNA | protein_coding |
| 463230 | enst00000262410 | sg00000186868 | mapt-201 | 17 | 45894382 | 46028334 | + | mRNA | protein_coding |
| 463230 | enst00000351559 | sg00000186868 | mapt-205 | 17 | 45894382 | 46028334 | + | mRNA | protein_coding |
| 463230 | enst00000535772 | sg00000186868 | mapt-210 | 17 | 45894382 | 46028334 | + | mRNA | protein_coding |
| 463230 | enst00000344290 | sg00000186868 | mapt-204 | 17 | 45894382 | 46028334 | + | mRNA | protein_coding |
| 463414 | enst00000571311 | sg00000186868 | mapt-212 | 17 | 45894566 | 45978425 | + | mRNA | nonsense_mediated_decay |
| 463424 | enst00000570299 | sg00000186868 | mapt-211 | 17 | 45894576 | 46018730 | + | lnc_RNA | processed_transcript |
| 463516 | enst00000334239 | sg00000186868 | mapt-202 | 17 | 45894668 | 46024183 | + | mRNA | protein_coding |
| 463522 | enst00000446361 | sg00000186868 | mapt-209 | 17 | 45894674 | 46028334 | + | mRNA | protein_coding |
| 464361 | enst00000579599 | sg00000264589 | mapt-as1-202 | 17 | 45843874 | 45895513 | - | lnc_RNA | lncrna |
| 464448 | enst00000579244 | sg00000264589 | mapt-as1-201 | 17 | 45843651 | 45895600 | - | lnc_RNA | lncrna |
| 464473 | enst00000653949 | sg00000264589 | mapt-as1-206 | 17 | 45841212 | 45895625 | - | lnc_RNA | lncrna |
| 464478 | enst00000634876 | sg00000264589 | mapt-as1-204 | 17 | 45799390 | 45895630 | - | lnc_RNA | lncrna |
| 464528 | enst00000649665 | sg00000264589 | mapt-as1-205 | 17 | 45841418 | 45895680 | - | lnc_RNA | lncrna |
| 464631 | enst00000624111 | sg00000279685 | mapt-it1-201 | 17 | 45895783 | 45898798 | + | lnc_RNA | lncrna |
| 479627 | enst00000574252 | sg00000262881 | cr936218.2-201 | 17 | 45907670 | 45910779 | - | lnc_RNA | lncrna |
| -481045 | enst00000591013 | sg00000267334 | ac015936.1-201 | 17 | 44947912 | 44948939 | + | lnc_RNA | lncrna |
| -481184 | enst00000593135 | sg00000186185 | kif18b-204 | 17 | 44924711 | 44947773 | - | mRNA | protein_coding |
| -481320 | enst00000587309 | sg00000186185 | kif18b-202 | 17 | 44924709 | 44947637 | - | mRNA | protein_coding |
| -492586 | enst00000590129 | sg00000186185 | kif18b-203 | 17 | 44926360 | 44936371 | - | mRNA | protein_coding |
| -494276 | enst00000619908 | sg00000278223 | mir6783-201 | 17 | 44934618 | 44934681 | - | miRNA | mirna |
| -494981 | enst00000585687 | sg00000186185 | kif18b-201 | 17 | 44932322 | 44933976 | - | lnc_RNA | retained_intron |
Source file: /hps/research1/birney/users/adrien/analyses/cancer_DNA_promethion/run_1_2_3_4/DNA_pipeline_2/results/methylation/pycometh_meth_comp_CGI_3/out.tsv.gz
MD5 hash: 9aa0e3f69cb4e12345c3758eb68a5efc