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CpG interval report generated on 20/05/20 with pycoMeth 0.4.6
Interval details
| pvalue rank | chromosome | start | end | length | number of samples | number of CpGs | pvalue | adjusted pvalue |
|---|---|---|---|---|---|---|---|---|
| #87 | 19 | 1070971 | 1072321 | 1350 | 3 | 42 | 1.86251e-18 | 2.12904e-16 |
Methylation log-likelihood ratio by CpG position
Distribution of CpG methylation log-likelihood ratio by sample
Closest transcripts TSS
| distance to tss | transcript id | gene id | transcript name | chromosome | start | end | strand | feature type | transcript biotype |
|---|---|---|---|---|---|---|---|---|---|
| 0 | enst00000543365 | sg00000180448 | ac004151.1-208 | 19 | 1071221 | 1086628 | + | mRNA | protein_coding |
| 0 | enst00000592335 | sg00000180448 | ac004151.1-209 | 19 | 1071513 | 1073549 | + | lnc_RNA | processed_transcript |
| 1262 | enst00000586033 | sg00000180448 | ac004151.1-210 | 19 | 1073583 | 1074724 | + | lnc_RNA | retained_intron |
| -3473 | enst00000586866 | sg00000180448 | ac004151.1-207 | 19 | 1067498 | 1086628 | + | mRNA | protein_coding |
| -3644 | enst00000590214 | sg00000180448 | ac004151.1-206 | 19 | 1067327 | 1086626 | + | mRNA | protein_coding |
| -3652 | enst00000591293 | sg00000180448 | ac004151.1-205 | 19 | 1067319 | 1080961 | + | lnc_RNA | retained_intron |
| -3654 | enst00000587602 | sg00000180448 | ac004151.1-204 | 19 | 1067317 | 1086628 | + | mRNA | nonsense_mediated_decay |
| -3805 | enst00000313093 | sg00000180448 | ac004151.1-203 | 19 | 1067166 | 1086628 | + | mRNA | protein_coding |
| -4462 | enst00000587186 | sg00000180448 | ac004151.1-202 | 19 | 1066509 | 1073223 | + | mRNA | protein_coding |
| -5048 | enst00000539243 | sg00000180448 | ac004151.1-201 | 19 | 1065923 | 1086628 | + | mRNA | protein_coding |
| 5166 | enst00000590577 | sg00000180448 | ac004151.1-211 | 19 | 1077487 | 1086628 | + | mRNA | protein_coding |
| -6312 | enst00000524383 | sg00000064687 | abca7-204 | 19 | 1064659 | 1065328 | + | lnc_RNA | processed_transcript |
| -6919 | enst00000531478 | sg00000064687 | abca7-214 | 19 | 1064052 | 1065572 | + | lnc_RNA | retained_intron |
| -8792 | enst00000612569 | sg00000064687 | abca7-217 | 19 | 1062179 | 1065458 | + | mRNA | protein_coding |
| 9094 | enst00000586937 | sg00000180448 | ac004151.1-212 | 19 | 1081415 | 1082956 | + | lnc_RNA | retained_intron |
| 10200 | enst00000590512 | sg00000180448 | ac004151.1-213 | 19 | 1082521 | 1083329 | + | lnc_RNA | processed_transcript |
| 10463 | enst00000586378 | sg00000180448 | ac004151.1-214 | 19 | 1082784 | 1085996 | + | lnc_RNA | retained_intron |
| 10520 | enst00000592297 | sg00000180448 | ac004151.1-215 | 19 | 1082841 | 1086600 | + | lnc_RNA | retained_intron |
| 10618 | enst00000591169 | sg00000180448 | ac004151.1-216 | 19 | 1082939 | 1086628 | + | mRNA | nonsense_mediated_decay |
| -12971 | enst00000532194 | sg00000064687 | abca7-215 | 19 | 1058000 | 1059263 | + | lnc_RNA | retained_intron |
| -14037 | enst00000525073 | sg00000064687 | abca7-206 | 19 | 1056934 | 1065569 | + | mRNA | protein_coding |
| -14043 | enst00000529442 | sg00000064687 | abca7-210 | 19 | 1056928 | 1058732 | + | mRNA | nonsense_mediated_decay |
| -14986 | enst00000673773 | sg00000064687 | abca7-218 | 19 | 1055985 | 1065551 | + | lnc_RNA | retained_intron |
| -16895 | enst00000530092 | sg00000064687 | abca7-211 | 19 | 1054076 | 1055939 | + | mRNA | nonsense_mediated_decay |
| 17609 | enst00000586215 | sg00000099817 | polr2e-203 | 19 | 1088424 | 1089930 | - | lnc_RNA | retained_intron |
| 20025 | enst00000590060 | sg00000099817 | polr2e-207 | 19 | 1086595 | 1092346 | - | mRNA | nonsense_mediated_decay |
| -21556 | enst00000435683 | sg00000064687 | abca7-203 | 19 | 1049415 | 1065491 | + | mRNA | nonsense_mediated_decay |
| 22940 | enst00000585838 | sg00000099817 | polr2e-202 | 19 | 1088645 | 1095261 | - | mRNA | protein_coding |
| 23015 | enst00000591767 | sg00000099817 | polr2e-209 | 19 | 1088148 | 1095336 | - | mRNA | nonsense_mediated_decay |
| 23028 | enst00000592597 | sg00000099817 | polr2e-210 | 19 | 1093730 | 1095349 | - | lnc_RNA | retained_intron |
| 23033 | enst00000586746 | sg00000099817 | polr2e-204 | 19 | 1086579 | 1095354 | - | mRNA | protein_coding |
| 23033 | enst00000614705 | sg00000099817 | polr2e-212 | 19 | 1089897 | 1095354 | - | lnc_RNA | processed_transcript |
| 23040 | enst00000591709 | sg00000099817 | polr2e-208 | 19 | 1091501 | 1095361 | - | lnc_RNA | retained_intron |
| 23045 | enst00000619917 | sg00000099817 | polr2e-214 | 19 | 1088388 | 1095366 | - | mRNA | protein_coding |
| 23053 | enst00000215587 | sg00000099817 | polr2e-201 | 19 | 1088163 | 1095374 | - | mRNA | nonsense_mediated_decay |
| 23054 | enst00000586817 | sg00000099817 | polr2e-205 | 19 | 1088167 | 1095375 | - | lnc_RNA | retained_intron |
| 23054 | enst00000615234 | sg00000099817 | polr2e-213 | 19 | 1086574 | 1095375 | - | mRNA | protein_coding |
| 23054 | enst00000589737 | sg00000099817 | polr2e-206 | 19 | 1088148 | 1095375 | - | mRNA | nonsense_mediated_decay |
| 23059 | enst00000612655 | sg00000099817 | polr2e-211 | 19 | 1087645 | 1095380 | - | mRNA | protein_coding |
| -25439 | enst00000533574 | sg00000064687 | abca7-216 | 19 | 1045532 | 1047554 | + | lnc_RNA | processed_transcript |
| -29766 | enst00000527496 | sg00000064687 | abca7-209 | 19 | 1041205 | 1042104 | + | lnc_RNA | retained_intron |
| -29769 | enst00000531467 | sg00000064687 | abca7-213 | 19 | 1041202 | 1042176 | + | mRNA | protein_coding |
| -30851 | enst00000524850 | sg00000064687 | abca7-205 | 19 | 1040120 | 1042391 | + | mRNA | protein_coding |
| -30853 | enst00000525238 | sg00000064687 | abca7-207 | 19 | 1040118 | 1042465 | + | lnc_RNA | retained_intron |
| -30855 | enst00000530703 | sg00000064687 | abca7-212 | 19 | 1040116 | 1041682 | + | lnc_RNA | retained_intron |
| -30864 | enst00000263094 | sg00000064687 | abca7-201 | 19 | 1040107 | 1065572 | + | mRNA | protein_coding |
| -30868 | enst00000526885 | sg00000064687 | abca7-208 | 19 | 1040103 | 1042744 | + | lnc_RNA | retained_intron |
| -30974 | enst00000433129 | sg00000064687 | abca7-202 | 19 | 1039997 | 1065567 | + | lnc_RNA | retained_intron |
| 31605 | enst00000616066 | sg00000167468 | gpx4-212 | 19 | 1103926 | 1106787 | + | mRNA | protein_coding |
| 31673 | enst00000354171 | sg00000167468 | gpx4-201 | 19 | 1103994 | 1106779 | + | mRNA | protein_coding |
| 31687 | enst00000589115 | sg00000167468 | gpx4-207 | 19 | 1104008 | 1106779 | + | mRNA | protein_coding |
| 31731 | enst00000611653 | sg00000167468 | gpx4-210 | 19 | 1104052 | 1106779 | + | mRNA | protein_coding |
| 31746 | enst00000593032 | sg00000167468 | gpx4-209 | 19 | 1104067 | 1106443 | + | mRNA | protein_coding |
| 31752 | enst00000588919 | sg00000167468 | gpx4-206 | 19 | 1104073 | 1106788 | + | mRNA | protein_coding |
| -31907 | enst00000623459 | sg00000279753 | ac011558.1-201 | 19 | 1038727 | 1039064 | - | unconfirmed_transcript | tec |
| 32094 | enst00000585362 | sg00000167468 | gpx4-202 | 19 | 1104415 | 1105761 | + | mRNA | protein_coding |
| 32329 | enst00000622390 | sg00000167468 | gpx4-213 | 19 | 1104650 | 1106787 | + | mRNA | protein_coding |
| 32385 | enst00000614791 | sg00000167468 | gpx4-211 | 19 | 1104706 | 1105483 | + | mRNA | protein_coding |
| 32831 | enst00000587648 | sg00000167468 | gpx4-204 | 19 | 1105152 | 1106564 | + | mRNA | protein_coding |
| 32835 | enst00000592940 | sg00000167468 | gpx4-208 | 19 | 1105156 | 1106791 | + | lnc_RNA | retained_intron |
| 32932 | enst00000587932 | sg00000167468 | gpx4-205 | 19 | 1105253 | 1105673 | + | lnc_RNA | retained_intron |
| 33133 | enst00000585480 | sg00000167468 | gpx4-203 | 19 | 1105454 | 1106779 | + | mRNA | non_stop_decay |
| -34172 | enst00000564572 | sg00000064666 | cnn2-206 | 19 | 1036799 | 1039064 | + | lnc_RNA | retained_intron |
| 38741 | enst00000586109 | sg00000064932 | sbno2-203 | 19 | 1109501 | 1111062 | - | lnc_RNA | retained_intron |
| 39284 | enst00000587673 | sg00000064932 | sbno2-206 | 19 | 1108565 | 1111605 | - | lnc_RNA | retained_intron |
| -40028 | enst00000566695 | sg00000064666 | cnn2-208 | 19 | 1030943 | 1037733 | + | mRNA | protein_coding |
| -44280 | enst00000562075 | sg00000064666 | cnn2-204 | 19 | 1026691 | 1036677 | + | mRNA | protein_coding |
| -44280 | enst00000607102 | sg00000064666 | cnn2-212 | 19 | 1026691 | 1036688 | + | mRNA | protein_coding |
| -44309 | enst00000606983 | sg00000064666 | cnn2-211 | 19 | 1026662 | 1036472 | + | mRNA | protein_coding |
| -44340 | enst00000568865 | sg00000064666 | cnn2-209 | 19 | 1026631 | 1038309 | + | mRNA | protein_coding |
| -44342 | enst00000562958 | sg00000064666 | cnn2-205 | 19 | 1026629 | 1039068 | + | mRNA | protein_coding |
| -44342 | enst00000569352 | sg00000064666 | cnn2-210 | 19 | 1026629 | 1037632 | + | mRNA | nonsense_mediated_decay |
| -44353 | enst00000565096 | sg00000064666 | cnn2-207 | 19 | 1026618 | 1039068 | + | mRNA | protein_coding |
| -44361 | enst00000348419 | sg00000064666 | cnn2-202 | 19 | 1026610 | 1039068 | + | mRNA | protein_coding |
| -44363 | enst00000263097 | sg00000064666 | cnn2-201 | 19 | 1026608 | 1039065 | + | mRNA | protein_coding |
| -44385 | enst00000562015 | sg00000064666 | cnn2-203 | 19 | 1026586 | 1032695 | + | mRNA | protein_coding |
| 47807 | enst00000590446 | sg00000064932 | sbno2-208 | 19 | 1117396 | 1120128 | - | lnc_RNA | retained_intron |
| -49449 | enst00000384627 | sg00000207357 | rnu6-2-201 | 19 | 1021522 | 1021628 | + | snRNA | snrna |
| -49792 | enst00000593068 | sg00000182087 | tmem259-211 | 19 | 1009648 | 1021179 | - | mRNA | nonsense_mediated_decay |
| -49848 | enst00000356663 | sg00000182087 | tmem259-202 | 19 | 1009653 | 1021123 | - | mRNA | protein_coding |
| -49856 | enst00000333175 | sg00000182087 | tmem259-201 | 19 | 1009651 | 1021115 | - | mRNA | protein_coding |
| -50120 | enst00000586704 | sg00000182087 | tmem259-205 | 19 | 1009653 | 1020851 | - | lnc_RNA | retained_intron |
| -53551 | enst00000592590 | sg00000182087 | tmem259-209 | 19 | 1009650 | 1017420 | - | mRNA | protein_coding |
| -56667 | enst00000586250 | sg00000182087 | tmem259-203 | 19 | 1012113 | 1014304 | - | mRNA | protein_coding |
| -56724 | enst00000589055 | sg00000182087 | tmem259-206 | 19 | 1011866 | 1014247 | - | lnc_RNA | retained_intron |
| -57332 | enst00000589831 | sg00000182087 | tmem259-207 | 19 | 1012541 | 1013639 | - | lnc_RNA | retained_intron |
| -57629 | enst00000607316 | sg00000182087 | tmem259-212 | 19 | 1011852 | 1013342 | - | lnc_RNA | retained_intron |
| -58682 | enst00000592618 | sg00000182087 | tmem259-210 | 19 | 1009652 | 1012289 | - | lnc_RNA | retained_intron |
| -58979 | enst00000586285 | sg00000182087 | tmem259-204 | 19 | 1010695 | 1011992 | - | mRNA | protein_coding |
| -59615 | enst00000592052 | sg00000182087 | tmem259-208 | 19 | 1009720 | 1011356 | - | lnc_RNA | retained_intron |
| 59900 | enst00000438103 | sg00000064932 | sbno2-202 | 19 | 1107637 | 1132221 | - | mRNA | protein_coding |
| 59900 | enst00000592222 | sg00000064932 | sbno2-210 | 19 | 1115356 | 1132221 | - | lnc_RNA | retained_intron |
| -60750 | enst00000610701 | sg00000274177 | ac004528.2-201 | 19 | 1010221 | 1010907 | + | lnc_RNA | lncrna |
| -66436 | enst00000588335 | sg00000116032 | grin3b-202 | 19 | 1004535 | 1005279 | + | lnc_RNA | processed_transcript |
| -68214 | enst00000588380 | sg00000266990 | ac004528.1-201 | 19 | 999796 | 1002757 | - | lnc_RNA | lncrna |
| -70552 | enst00000234389 | sg00000116032 | grin3b-201 | 19 | 1000419 | 1009732 | + | mRNA | protein_coding |
| -76957 | enst00000591155 | sg00000065268 | wdr18-207 | 19 | 994014 | 994554 | + | lnc_RNA | retained_intron |
| -79837 | enst00000590354 | sg00000065268 | wdr18-205 | 19 | 991134 | 994557 | + | mRNA | nonsense_mediated_decay |
| -80324 | enst00000591276 | sg00000065268 | wdr18-208 | 19 | 990647 | 991334 | + | lnc_RNA | retained_intron |
| 82815 | enst00000590998 | sg00000064932 | sbno2-209 | 19 | 1127660 | 1155136 | - | mRNA | protein_coding |
| -86593 | enst00000591997 | sg00000065268 | wdr18-210 | 19 | 984378 | 998438 | + | mRNA | protein_coding |
| -86613 | enst00000607440 | sg00000065268 | wdr18-211 | 19 | 984358 | 994557 | + | mRNA | protein_coding |
| -86613 | enst00000251289 | sg00000065268 | wdr18-201 | 19 | 984358 | 994556 | + | mRNA | protein_coding |
| -86613 | enst00000591985 | sg00000065268 | wdr18-209 | 19 | 984358 | 994554 | + | mRNA | nonsense_mediated_decay |
| -86626 | enst00000590397 | sg00000065268 | wdr18-206 | 19 | 984345 | 991286 | + | mRNA | nonsense_mediated_decay |
| -86630 | enst00000586317 | sg00000065268 | wdr18-203 | 19 | 984341 | 990258 | + | lnc_RNA | retained_intron |
| -86639 | enst00000587001 | sg00000065268 | wdr18-204 | 19 | 984332 | 994557 | + | mRNA | protein_coding |
| -86700 | enst00000585809 | sg00000065268 | wdr18-202 | 19 | 984271 | 994570 | + | mRNA | protein_coding |
| 96825 | enst00000587655 | sg00000064932 | sbno2-205 | 19 | 1127710 | 1169146 | - | mRNA | protein_coding |
| 101453 | enst00000590176 | sg00000064932 | sbno2-207 | 19 | 1127661 | 1173774 | - | mRNA | protein_coding |
| 101935 | enst00000587024 | sg00000064932 | sbno2-204 | 19 | 1107641 | 1174256 | - | mRNA | protein_coding |
| 101947 | enst00000361757 | sg00000064932 | sbno2-201 | 19 | 1107638 | 1174268 | - | mRNA | protein_coding |
| -104184 | enst00000590749 | sg00000116017 | arid3a-206 | 19 | 966787 | 968795 | + | lnc_RNA | retained_intron |
| 105237 | enst00000585748 | sg00000118046 | stk11-203 | 19 | 1177558 | 1219386 | + | mRNA | protein_coding |
| -106682 | enst00000585733 | sg00000116017 | arid3a-203 | 19 | 964289 | 965270 | + | lnc_RNA | retained_intron |
| -114486 | enst00000613285 | sg00000275162 | ac005391.1-201 | 19 | 956485 | 958149 | + | lnc_RNA | lncrna |
| 130888 | enst00000591146 | sg00000267736 | hmgb2p1-201 | 19 | 1203209 | 1203842 | + | pseudogenic_transcript | transcribed_processed_pseudogene |
| 133457 | enst00000326873 | sg00000118046 | stk11-201 | 19 | 1205778 | 1228431 | + | mRNA | protein_coding |
| 133484 | enst00000586243 | sg00000118046 | stk11-205 | 19 | 1205805 | 1228094 | + | mRNA | protein_coding |
| 133865 | enst00000652231 | sg00000118046 | stk11-210 | 19 | 1206186 | 1223873 | + | mRNA | protein_coding |
| 134495 | enst00000593219 | sg00000118046 | stk11-209 | 19 | 1206816 | 1219357 | + | mRNA | nonsense_mediated_decay |
| 134503 | enst00000589152 | sg00000118046 | stk11-207 | 19 | 1206824 | 1228012 | + | lnc_RNA | retained_intron |
| 134548 | enst00000585851 | sg00000118046 | stk11-204 | 19 | 1206869 | 1220617 | + | mRNA | protein_coding |
| 134770 | enst00000586358 | sg00000118046 | stk11-206 | 19 | 1207091 | 1221958 | + | lnc_RNA | retained_intron |
| -138406 | enst00000457152 | sg00000116017 | arid3a-202 | 19 | 932565 | 964366 | + | mRNA | nonsense_mediated_decay |
| -138462 | enst00000587532 | sg00000116017 | arid3a-205 | 19 | 932509 | 972055 | + | mRNA | protein_coding |
| -142154 | enst00000585647 | sg00000267159 | ac005379.1-201 | 19 | 928259 | 928817 | - | lnc_RNA | lncrna |
| -142293 | enst00000592216 | sg00000116017 | arid3a-207 | 19 | 928678 | 929357 | + | lnc_RNA | processed_transcript |
| -144936 | enst00000263620 | sg00000116017 | arid3a-201 | 19 | 926035 | 975939 | + | mRNA | protein_coding |
| -145190 | enst00000585895 | sg00000116017 | arid3a-204 | 19 | 925781 | 929498 | + | lnc_RNA | processed_transcript |
| 147692 | enst00000591133 | sg00000118046 | stk11-208 | 19 | 1220013 | 1223104 | + | lnc_RNA | retained_intron |
| 150827 | enst00000585465 | sg00000118046 | stk11-202 | 19 | 1223148 | 1228095 | + | mRNA | protein_coding |
| -153468 | enst00000606939 | sg00000116014 | kiss1r-203 | 19 | 917503 | 920748 | + | mRNA | protein_coding |
| -153638 | enst00000234371 | sg00000116014 | kiss1r-201 | 19 | 917333 | 921005 | + | mRNA | protein_coding |
| -153684 | enst00000592648 | sg00000116014 | kiss1r-202 | 19 | 917287 | 919536 | + | mRNA | protein_coding |
| -157726 | enst00000587975 | sg00000198858 | r3hdm4-203 | 19 | 896504 | 913245 | - | mRNA | protein_coding |
| -157726 | enst00000589428 | sg00000198858 | r3hdm4-204 | 19 | 896503 | 913245 | - | mRNA | nonsense_mediated_decay |
| -157752 | enst00000361574 | sg00000198858 | r3hdm4-201 | 19 | 896503 | 913219 | - | mRNA | protein_coding |
| -157767 | enst00000590454 | sg00000198858 | r3hdm4-206 | 19 | 900078 | 913204 | - | mRNA | nonsense_mediated_decay |
| -157814 | enst00000626716 | sg00000198858 | r3hdm4-208 | 19 | 902561 | 913157 | - | mRNA | protein_coding |
| -157820 | enst00000589445 | sg00000198858 | r3hdm4-205 | 19 | 901491 | 913151 | - | lnc_RNA | retained_intron |
| 162764 | enst00000591127 | sg00000099625 | cbarp-205 | 19 | 1229948 | 1235085 | - | mRNA | nonsense_mediated_decay |
| 165499 | enst00000215376 | sg00000099625 | cbarp-201 | 19 | 1234647 | 1237820 | - | lnc_RNA | retained_intron |
| 165525 | enst00000589260 | sg00000099625 | cbarp-203 | 19 | 1234574 | 1237846 | - | lnc_RNA | retained_intron |
| 165670 | enst00000382477 | sg00000099625 | cbarp-202 | 19 | 1229179 | 1237991 | - | mRNA | protein_coding |
| 165706 | enst00000590083 | sg00000099625 | cbarp-204 | 19 | 1228287 | 1238027 | - | mRNA | protein_coding |
| 165706 | enst00000648750 | sg00000099625 | cbarp-206 | 19 | 1228287 | 1238027 | - | mRNA | nonsense_mediated_decay |
| 165706 | enst00000650044 | sg00000099625 | cbarp-207 | 19 | 1228287 | 1238027 | - | mRNA | protein_coding |
| 165858 | enst00000592843 | sg00000267778 | ac004221.1-201 | 19 | 1238179 | 1239522 | + | lnc_RNA | lncrna |
| -168561 | enst00000591829 | sg00000198858 | r3hdm4-207 | 19 | 897519 | 902410 | - | lnc_RNA | processed_transcript |
| 169425 | enst00000395633 | sg00000099624 | atp5f1d-202 | 19 | 1241746 | 1244825 | + | mRNA | protein_coding |
| 169430 | enst00000215375 | sg00000099624 | atp5f1d-201 | 19 | 1241751 | 1244825 | + | mRNA | protein_coding |
| 169447 | enst00000592624 | sg00000099624 | atp5f1d-208 | 19 | 1241768 | 1243354 | + | lnc_RNA | retained_intron |
| 169449 | enst00000590265 | sg00000099624 | atp5f1d-205 | 19 | 1241770 | 1244825 | + | lnc_RNA | retained_intron |
| 169496 | enst00000588538 | sg00000099624 | atp5f1d-203 | 19 | 1241817 | 1244825 | + | lnc_RNA | retained_intron |
| 169499 | enst00000591660 | sg00000099624 | atp5f1d-207 | 19 | 1241820 | 1244786 | + | mRNA | protein_coding |
| -169735 | enst00000586080 | sg00000198858 | r3hdm4-202 | 19 | 899644 | 901236 | - | lnc_RNA | retained_intron |
| 170184 | enst00000591249 | sg00000099624 | atp5f1d-206 | 19 | 1242505 | 1244825 | + | mRNA | protein_coding |
| 171736 | enst00000589478 | sg00000099624 | atp5f1d-204 | 19 | 1244057 | 1244825 | + | lnc_RNA | retained_intron |
| 171737 | enst00000614837 | sg00000099624 | atp5f1d-209 | 19 | 1244058 | 1244825 | + | lnc_RNA | retained_intron |
| 176232 | enst00000300952 | sg00000167470 | midn-201 | 19 | 1248553 | 1259140 | + | mRNA | protein_coding |
| 176232 | enst00000586757 | sg00000167470 | midn-202 | 19 | 1248553 | 1254430 | + | mRNA | protein_coding |
| -177487 | enst00000384776 | sg00000207507 | rnu6-9-201 | 19 | 893484 | 893590 | + | snRNA | snrna |
| 177567 | enst00000591446 | sg00000167470 | midn-206 | 19 | 1249888 | 1258699 | + | mRNA | protein_coding |
| -177753 | enst00000395808 | sg00000175221 | med16-204 | 19 | 867630 | 893218 | - | mRNA | protein_coding |
| -177755 | enst00000606248 | sg00000175221 | med16-209 | 19 | 867964 | 893216 | - | mRNA | nonsense_mediated_decay |
| -177771 | enst00000269814 | sg00000175221 | med16-201 | 19 | 867964 | 893200 | - | mRNA | protein_coding |
| -177778 | enst00000312090 | sg00000175221 | med16-202 | 19 | 867853 | 893193 | - | mRNA | protein_coding |
| -177784 | enst00000325464 | sg00000175221 | med16-203 | 19 | 867963 | 893187 | - | mRNA | protein_coding |
| -177813 | enst00000592373 | sg00000175221 | med16-207 | 19 | 885822 | 893158 | - | mRNA | nonsense_mediated_decay |
| -178156 | enst00000586342 | sg00000175221 | med16-206 | 19 | 890984 | 892815 | - | mRNA | protein_coding |
| 178940 | enst00000591302 | sg00000167470 | midn-205 | 19 | 1251261 | 1254237 | + | lnc_RNA | retained_intron |
| 179241 | enst00000586843 | sg00000167470 | midn-203 | 19 | 1251562 | 1254302 | + | mRNA | protein_coding |
| -179823 | enst00000616387 | sg00000175221 | med16-212 | 19 | 867972 | 891148 | - | mRNA | protein_coding |
| -179823 | enst00000606828 | sg00000175221 | med16-210 | 19 | 873536 | 891148 | - | mRNA | protein_coding |
| -179823 | enst00000592943 | sg00000175221 | med16-208 | 19 | 873536 | 891148 | - | mRNA | protein_coding |
| -179823 | enst00000586017 | sg00000175221 | med16-205 | 19 | 873536 | 891148 | - | mRNA | protein_coding |
| -179823 | enst00000617672 | sg00000175221 | med16-213 | 19 | 867972 | 891148 | - | mRNA | protein_coding |
| 181363 | enst00000590136 | sg00000167470 | midn-204 | 19 | 1253684 | 1254303 | + | lnc_RNA | retained_intron |
| -185062 | enst00000607471 | sg00000175221 | med16-211 | 19 | 867963 | 885909 | - | mRNA | protein_coding |
| 187063 | enst00000588030 | sg00000099622 | cirbp-215 | 19 | 1259384 | 1273172 | + | mRNA | protein_coding |
| 188835 | enst00000588411 | sg00000099622 | cirbp-219 | 19 | 1261156 | 1271433 | + | mRNA | protein_coding |
| 188845 | enst00000592467 | sg00000099622 | cirbp-239 | 19 | 1261166 | 1264572 | + | lnc_RNA | retained_intron |
| 189021 | enst00000591622 | sg00000099622 | cirbp-233 | 19 | 1261342 | 1264572 | + | lnc_RNA | retained_intron |
| 189061 | enst00000592051 | sg00000099622 | cirbp-236 | 19 | 1261382 | 1271029 | + | mRNA | protein_coding |
| 189500 | enst00000589161 | sg00000099622 | cirbp-221 | 19 | 1261821 | 1264698 | + | lnc_RNA | retained_intron |
| 194332 | enst00000586472 | sg00000099622 | cirbp-207 | 19 | 1266653 | 1273172 | + | mRNA | protein_coding |
| 194477 | enst00000589266 | sg00000099622 | cirbp-223 | 19 | 1266798 | 1271360 | + | mRNA | protein_coding |
| 194767 | enst00000588090 | sg00000099622 | cirbp-216 | 19 | 1267088 | 1273172 | + | mRNA | protein_coding |
| 194833 | enst00000592815 | sg00000099622 | cirbp-240 | 19 | 1267154 | 1271151 | + | mRNA | protein_coding |
| 194908 | enst00000591935 | sg00000099622 | cirbp-235 | 19 | 1267229 | 1274480 | + | mRNA | protein_coding |
| 195018 | enst00000586548 | sg00000099622 | cirbp-208 | 19 | 1267339 | 1273172 | + | mRNA | protein_coding |
| 195091 | enst00000585913 | sg00000099622 | cirbp-205 | 19 | 1267412 | 1274810 | + | mRNA | nonsense_mediated_decay |
| 196945 | enst00000585630 | sg00000099622 | cirbp-204 | 19 | 1269266 | 1272582 | + | mRNA | protein_coding |
| 196945 | enst00000589710 | sg00000099622 | cirbp-225 | 19 | 1269266 | 1273172 | + | mRNA | protein_coding |
| 196947 | enst00000628979 | sg00000099622 | cirbp-246 | 19 | 1269268 | 1272443 | + | mRNA | protein_coding |
| 197006 | enst00000586773 | sg00000099622 | cirbp-211 | 19 | 1269327 | 1274595 | + | mRNA | protein_coding |
| 197009 | enst00000587323 | sg00000099622 | cirbp-213 | 19 | 1269330 | 1272550 | + | mRNA | protein_coding |
| 197010 | enst00000589686 | sg00000099622 | cirbp-224 | 19 | 1269331 | 1271995 | + | mRNA | protein_coding |
| 197010 | enst00000592412 | sg00000099622 | cirbp-238 | 19 | 1269331 | 1272041 | + | mRNA | nonsense_mediated_decay |
| 197010 | enst00000593128 | sg00000099622 | cirbp-243 | 19 | 1269331 | 1272552 | + | lnc_RNA | retained_intron |
| 197011 | enst00000593283 | sg00000099622 | cirbp-244 | 19 | 1269332 | 1272057 | + | lnc_RNA | retained_intron |
| 197011 | enst00000593093 | sg00000099622 | cirbp-242 | 19 | 1269332 | 1274807 | + | lnc_RNA | retained_intron |
| 197011 | enst00000591097 | sg00000099622 | cirbp-231 | 19 | 1269332 | 1272604 | + | mRNA | nonsense_mediated_decay |
| 197011 | enst00000590704 | sg00000099622 | cirbp-229 | 19 | 1269332 | 1272777 | + | lnc_RNA | retained_intron |
| 197011 | enst00000588230 | sg00000099622 | cirbp-217 | 19 | 1269332 | 1272477 | + | mRNA | protein_coding |
| 197011 | enst00000413636 | sg00000099622 | cirbp-202 | 19 | 1269332 | 1273172 | + | mRNA | protein_coding |
| 197011 | enst00000587896 | sg00000099622 | cirbp-214 | 19 | 1269332 | 1274810 | + | mRNA | protein_coding |
| 197012 | enst00000590347 | sg00000099622 | cirbp-228 | 19 | 1269333 | 1274810 | + | mRNA | nonsense_mediated_decay |
| 197014 | enst00000587169 | sg00000099622 | cirbp-212 | 19 | 1269335 | 1274810 | + | mRNA | nonsense_mediated_decay |
| 197015 | enst00000593048 | sg00000099622 | cirbp-241 | 19 | 1269336 | 1272600 | + | mRNA | nonsense_mediated_decay |
| 197016 | enst00000320936 | sg00000099622 | cirbp-201 | 19 | 1269337 | 1273172 | + | mRNA | protein_coding |
| 197026 | enst00000586636 | sg00000099622 | cirbp-210 | 19 | 1269347 | 1274880 | + | mRNA | nonsense_mediated_decay |
| 197027 | enst00000591055 | sg00000099622 | cirbp-230 | 19 | 1269348 | 1272803 | + | mRNA | nonsense_mediated_decay |
| 197027 | enst00000591376 | sg00000099622 | cirbp-232 | 19 | 1269348 | 1274880 | + | mRNA | nonsense_mediated_decay |
| 197029 | enst00000589235 | sg00000099622 | cirbp-222 | 19 | 1269350 | 1274810 | + | mRNA | protein_coding |
| 197030 | enst00000591659 | sg00000099622 | cirbp-234 | 19 | 1269351 | 1271639 | + | mRNA | protein_coding |
| 197031 | enst00000585914 | sg00000099622 | cirbp-206 | 19 | 1269352 | 1274773 | + | mRNA | nonsense_mediated_decay |
| 197035 | enst00000590171 | sg00000099622 | cirbp-226 | 19 | 1269356 | 1272374 | + | mRNA | nonsense_mediated_decay |
| 197939 | enst00000585832 | sg00000267493 | cirbp-as1-201 | 19 | 1267471 | 1270260 | - | lnc_RNA | lncrna |
| 198622 | enst00000588344 | sg00000099622 | cirbp-218 | 19 | 1270943 | 1273104 | + | mRNA | protein_coding |
| 198709 | enst00000592234 | sg00000099622 | cirbp-237 | 19 | 1271030 | 1274810 | + | mRNA | nonsense_mediated_decay |
| 199661 | enst00000444172 | sg00000099622 | cirbp-203 | 19 | 1271982 | 1274806 | + | mRNA | nonsense_mediated_decay |
| -199905 | enst00000621073 | sg00000175221 | med16-214 | 19 | 867963 | 871066 | - | mRNA | protein_coding |
| 200596 | enst00000590188 | sg00000099622 | cirbp-227 | 19 | 1272917 | 1274810 | + | lnc_RNA | processed_transcript |
| 200604 | enst00000588917 | sg00000099622 | cirbp-220 | 19 | 1272925 | 1274810 | + | lnc_RNA | retained_intron |
| 201183 | enst00000586555 | sg00000099622 | cirbp-209 | 19 | 1273504 | 1274810 | + | lnc_RNA | retained_intron |
| 201233 | enst00000621399 | sg00000099622 | cirbp-245 | 19 | 1273554 | 1274805 | + | lnc_RNA | retained_intron |
| 203209 | enst00000409293 | sg00000228300 | fam174c-201 | 19 | 1275530 | 1279228 | + | mRNA | protein_coding |
| 203700 | enst00000469144 | sg00000228300 | fam174c-202 | 19 | 1276021 | 1279244 | + | mRNA | protein_coding |
| 203772 | enst00000485191 | sg00000228300 | fam174c-203 | 19 | 1276093 | 1279244 | + | lnc_RNA | retained_intron |
| 203779 | enst00000590269 | sg00000228300 | fam174c-205 | 19 | 1276100 | 1278836 | + | lnc_RNA | processed_transcript |
| 204555 | enst00000585716 | sg00000228300 | fam174c-204 | 19 | 1276876 | 1279244 | + | lnc_RNA | processed_transcript |
| -211307 | enst00000327726 | sg00000197766 | cfd-201 | 19 | 859664 | 863641 | + | mRNA | protein_coding |
| -211307 | enst00000592860 | sg00000197766 | cfd-202 | 19 | 859664 | 863238 | + | mRNA | protein_coding |
| 213552 | enst00000215368 | sg00000099617 | efna2-201 | 19 | 1285873 | 1301431 | + | mRNA | protein_coding |
| -218668 | enst00000263621 | sg00000197561 | elane-201 | 19 | 852303 | 856243 | + | mRNA | protein_coding |
| -219957 | enst00000590230 | sg00000197561 | elane-202 | 19 | 851014 | 856247 | + | mRNA | protein_coding |
| -227630 | enst00000544537 | sg00000196415 | prtn3-202 | 19 | 843341 | 848175 | + | mRNA | protein_coding |
| -229972 | enst00000234347 | sg00000196415 | prtn3-201 | 19 | 840999 | 848175 | + | mRNA | protein_coding |
| 235398 | enst00000494093 | sg00000240846 | rps15p9-201 | 19 | 1307401 | 1307719 | - | pseudogenic_transcript | processed_pseudogene |
| -243134 | enst00000233997 | sg00000172232 | azu1-201 | 19 | 827837 | 832018 | + | mRNA | protein_coding |
| -245874 | enst00000592205 | sg00000172232 | azu1-202 | 19 | 825097 | 832017 | + | mRNA | protein_coding |
| 248904 | enst00000590086 | sg00000267372 | ac005330.1-201 | 19 | 1321225 | 1322846 | + | lnc_RNA | lncrna |
| -248994 | enst00000520876 | sg00000129951 | plppr3-204 | 19 | 812488 | 821977 | - | mRNA | protein_coding |
| -249016 | enst00000519502 | sg00000129951 | plppr3-203 | 19 | 815203 | 821955 | - | mRNA | protein_coding |
| -249019 | enst00000359894 | sg00000129951 | plppr3-201 | 19 | 812488 | 821952 | - | mRNA | protein_coding |
| -256060 | enst00000517665 | sg00000129951 | plppr3-202 | 19 | 813756 | 814911 | - | mRNA | protein_coding |
| -257387 | enst00000583431 | sg00000263414 | mir3187-201 | 19 | 813584 | 813653 | + | miRNA | mirna |
| -263112 | enst00000585856 | sg00000011304 | ptbp1-206 | 19 | 807859 | 811021 | + | lnc_RNA | retained_intron |
| -265463 | enst00000589883 | sg00000011304 | ptbp1-215 | 19 | 805508 | 807028 | + | lnc_RNA | retained_intron |
| -265875 | enst00000585932 | sg00000011304 | ptbp1-207 | 19 | 805096 | 811016 | + | mRNA | nonsense_mediated_decay |
| -266031 | enst00000577608 | sg00000284361 | mir4745-201 | 19 | 804940 | 805001 | + | miRNA | mirna |
| -266053 | enst00000592804 | sg00000011304 | ptbp1-218 | 19 | 804918 | 806036 | + | lnc_RNA | retained_intron |
| -266113 | enst00000587136 | sg00000011304 | ptbp1-212 | 19 | 804858 | 806660 | + | lnc_RNA | retained_intron |
| -266348 | enst00000585956 | sg00000011304 | ptbp1-208 | 19 | 804623 | 808646 | + | mRNA | protein_coding |
| -266582 | enst00000621737 | sg00000011304 | ptbp1-219 | 19 | 804389 | 810774 | + | mRNA | nonsense_mediated_decay |
| -267394 | enst00000585535 | sg00000011304 | ptbp1-205 | 19 | 803577 | 808730 | + | mRNA | protein_coding |
| -267396 | enst00000592113 | sg00000011304 | ptbp1-217 | 19 | 803575 | 806045 | + | lnc_RNA | retained_intron |
| -271565 | enst00000350092 | sg00000011304 | ptbp1-202 | 19 | 799406 | 812222 | + | mRNA | protein_coding |
| -272543 | enst00000587094 | sg00000011304 | ptbp1-211 | 19 | 798428 | 804083 | + | mRNA | protein_coding |
| -273481 | enst00000587191 | sg00000011304 | ptbp1-213 | 19 | 797490 | 808762 | + | mRNA | protein_coding |
| -273509 | enst00000589575 | sg00000011304 | ptbp1-214 | 19 | 797462 | 805017 | + | mRNA | protein_coding |
| -273519 | enst00000394601 | sg00000011304 | ptbp1-204 | 19 | 797452 | 812312 | + | mRNA | protein_coding |
| -273519 | enst00000356948 | sg00000011304 | ptbp1-203 | 19 | 797452 | 812312 | + | mRNA | protein_coding |
| -273543 | enst00000586944 | sg00000011304 | ptbp1-210 | 19 | 797428 | 811289 | + | lnc_RNA | retained_intron |
| -273544 | enst00000586481 | sg00000011304 | ptbp1-209 | 19 | 797427 | 804634 | + | mRNA | protein_coding |
| -273546 | enst00000349038 | sg00000011304 | ptbp1-201 | 19 | 797425 | 812312 | + | mRNA | protein_coding |
| -273546 | enst00000590887 | sg00000011304 | ptbp1-216 | 19 | 797425 | 804582 | + | lnc_RNA | retained_intron |
| -273579 | enst00000627714 | sg00000011304 | ptbp1-220 | 19 | 797392 | 812327 | + | mRNA | protein_coding |
| -273896 | enst00000635647 | sg00000011304 | ptbp1-221 | 19 | 797075 | 812327 | + | mRNA | protein_coding |
| 282390 | enst00000592374 | sg00000160953 | pwwp3a-215 | 19 | 1354711 | 1357094 | + | mRNA | protein_coding |
| 282601 | enst00000590695 | sg00000160953 | pwwp3a-208 | 19 | 1354922 | 1360631 | + | lnc_RNA | retained_intron |
| 282651 | enst00000590866 | sg00000160953 | pwwp3a-209 | 19 | 1354972 | 1359894 | + | lnc_RNA | retained_intron |
| 282656 | enst00000591337 | sg00000160953 | pwwp3a-210 | 19 | 1354977 | 1360711 | + | mRNA | protein_coding |
| 283969 | enst00000591433 | sg00000160953 | pwwp3a-211 | 19 | 1356290 | 1371479 | + | mRNA | nonsense_mediated_decay |
| 283993 | enst00000591806 | sg00000160953 | pwwp3a-214 | 19 | 1356314 | 1378431 | + | mRNA | protein_coding |
| 283996 | enst00000588810 | sg00000160953 | pwwp3a-206 | 19 | 1356317 | 1360606 | + | mRNA | nonsense_mediated_decay |
| 284002 | enst00000652273 | sg00000160953 | pwwp3a-217 | 19 | 1356323 | 1378431 | + | mRNA | protein_coding |
| 284043 | enst00000415183 | sg00000160953 | pwwp3a-201 | 19 | 1356364 | 1377094 | + | mRNA | protein_coding |
| 284043 | enst00000587460 | sg00000160953 | pwwp3a-205 | 19 | 1356364 | 1377094 | + | mRNA | nonsense_mediated_decay |
| 284069 | enst00000627377 | sg00000160953 | pwwp3a-216 | 19 | 1356390 | 1373160 | + | mRNA | protein_coding |
| -288172 | enst00000662249 | sg00000267530 | linc01836-204 | 19 | 782799 | 785221 | + | lnc_RNA | lncrna |
| -288175 | enst00000586061 | sg00000267530 | linc01836-201 | 19 | 782796 | 785080 | + | lnc_RNA | lncrna |
| -288193 | enst00000665908 | sg00000267530 | linc01836-205 | 19 | 782778 | 786092 | + | lnc_RNA | lncrna |
| -288194 | enst00000666859 | sg00000267530 | linc01836-206 | 19 | 782777 | 783379 | + | lnc_RNA | lncrna |
| -288208 | enst00000606242 | sg00000267530 | linc01836-202 | 19 | 782763 | 785269 | + | lnc_RNA | lncrna |
| -288216 | enst00000654818 | sg00000267530 | linc01836-203 | 19 | 782755 | 785920 | + | lnc_RNA | lncrna |
| -289109 | enst00000606966 | sg00000272473 | ac006273.1-201 | 19 | 781002 | 781862 | - | lnc_RNA | lncrna |
| 289575 | enst00000586996 | sg00000160953 | pwwp3a-204 | 19 | 1361896 | 1366351 | + | lnc_RNA | retained_intron |
| 296783 | enst00000585399 | sg00000160953 | pwwp3a-202 | 19 | 1369104 | 1370778 | + | lnc_RNA | retained_intron |
| 299002 | enst00000586067 | sg00000160953 | pwwp3a-203 | 19 | 1371323 | 1376865 | + | lnc_RNA | processed_transcript |
| 299778 | enst00000591627 | sg00000160953 | pwwp3a-213 | 19 | 1372099 | 1376917 | + | lnc_RNA | retained_intron |
| 301186 | enst00000588888 | sg00000160953 | pwwp3a-207 | 19 | 1373507 | 1376917 | + | lnc_RNA | processed_transcript |
| 301186 | enst00000591453 | sg00000160953 | pwwp3a-212 | 19 | 1373507 | 1378428 | + | lnc_RNA | processed_transcript |
| 302043 | enst00000624592 | sg00000279488 | ac004623.1-201 | 19 | 1372238 | 1374364 | - | unconfirmed_transcript | tec |
| 304917 | enst00000587059 | sg00000267755 | ac005329.2-201 | 19 | 1376773 | 1377238 | - | lnc_RNA | lncrna |
| 305199 | enst00000589673 | sg00000267755 | ac005329.2-202 | 19 | 1376773 | 1377520 | - | lnc_RNA | lncrna |
| 311206 | enst00000546283 | sg00000115286 | ndufs7-216 | 19 | 1383527 | 1393545 | + | mRNA | protein_coding |
| 311554 | enst00000545446 | sg00000115286 | ndufs7-214 | 19 | 1383875 | 1395584 | + | lnc_RNA | retained_intron |
| 311563 | enst00000618074 | sg00000115286 | ndufs7-218 | 19 | 1383884 | 1395488 | + | mRNA | protein_coding |
| 311569 | enst00000543289 | sg00000115286 | ndufs7-213 | 19 | 1383890 | 1395584 | + | lnc_RNA | retained_intron |
| 311579 | enst00000539480 | sg00000115286 | ndufs7-210 | 19 | 1383900 | 1395589 | + | mRNA | protein_coding |
| 311579 | enst00000538662 | sg00000115286 | ndufs7-208 | 19 | 1383900 | 1393877 | + | lnc_RNA | retained_intron |
| 311583 | enst00000436115 | sg00000115286 | ndufs7-204 | 19 | 1383904 | 1393710 | + | lnc_RNA | retained_intron |
| 311583 | enst00000313408 | sg00000115286 | ndufs7-202 | 19 | 1383904 | 1395581 | + | mRNA | protein_coding |
| 311586 | enst00000534853 | sg00000115286 | ndufs7-205 | 19 | 1383907 | 1395576 | + | mRNA | nonsense_mediated_decay |
| 311586 | enst00000233627 | sg00000115286 | ndufs7-201 | 19 | 1383907 | 1395584 | + | mRNA | protein_coding |
| 311597 | enst00000546172 | sg00000115286 | ndufs7-215 | 19 | 1383918 | 1395584 | + | mRNA | nonsense_mediated_decay |
| 311597 | enst00000620479 | sg00000115286 | ndufs7-219 | 19 | 1383918 | 1395588 | + | mRNA | protein_coding |
| 311601 | enst00000414651 | sg00000115286 | ndufs7-203 | 19 | 1383922 | 1393532 | + | mRNA | protein_coding |
| 311730 | enst00000538929 | sg00000115286 | ndufs7-209 | 19 | 1384051 | 1393326 | + | lnc_RNA | processed_transcript |
| -312908 | enst00000614180 | sg00000099812 | misp-202 | 19 | 758063 | 760505 | + | lnc_RNA | processed_transcript |
| 314307 | enst00000622587 | sg00000115286 | ndufs7-220 | 19 | 1386628 | 1395584 | + | lnc_RNA | retained_intron |
| 315418 | enst00000538523 | sg00000115286 | ndufs7-207 | 19 | 1387739 | 1393661 | + | lnc_RNA | retained_intron |
| 315483 | enst00000540530 | sg00000115286 | ndufs7-212 | 19 | 1387804 | 1395589 | + | lnc_RNA | retained_intron |
| 315679 | enst00000535382 | sg00000115286 | ndufs7-206 | 19 | 1388000 | 1395584 | + | lnc_RNA | retained_intron |
| 315704 | enst00000539882 | sg00000115286 | ndufs7-211 | 19 | 1388025 | 1388799 | + | lnc_RNA | retained_intron |
| 317344 | enst00000626781 | sg00000280486 | ac005329.3-201 | 19 | 1385473 | 1389665 | - | lnc_RNA | lncrna |
| 319521 | enst00000591358 | sg00000115286 | ndufs7-217 | 19 | 1391842 | 1395584 | + | lnc_RNA | retained_intron |
| -319859 | enst00000215582 | sg00000099812 | misp-201 | 19 | 751112 | 764318 | + | mRNA | protein_coding |
| 322546 | enst00000585596 | sg00000248015 | ac005329.1-203 | 19 | 1393566 | 1394867 | - | lnc_RNA | lncrna |
| 322557 | enst00000589734 | sg00000248015 | ac005329.1-204 | 19 | 1393578 | 1394878 | - | lnc_RNA | lncrna |
| 322564 | enst00000650765 | sg00000248015 | ac005329.1-202 | 19 | 1393350 | 1394885 | - | lnc_RNA | lncrna |
| 324146 | enst00000501448 | sg00000248015 | ac005329.1-201 | 19 | 1392170 | 1396467 | - | lnc_RNA | lncrna |
| 327426 | enst00000640164 | sg00000130005 | gamt-204 | 19 | 1397383 | 1399747 | - | lnc_RNA | retained_intron |
| 327481 | enst00000591788 | sg00000130005 | gamt-203 | 19 | 1398600 | 1399802 | - | mRNA | protein_coding |
| 329173 | enst00000640762 | sg00000130005 | gamt-205 | 19 | 1397268 | 1401494 | - | mRNA | protein_coding |
| 329221 | enst00000252288 | sg00000130005 | gamt-201 | 19 | 1397026 | 1401542 | - | mRNA | protein_coding |
| 329249 | enst00000447102 | sg00000130005 | gamt-202 | 19 | 1397811 | 1401570 | - | mRNA | protein_coding |
| 335248 | enst00000336761 | sg00000071626 | dazap1-202 | 19 | 1407569 | 1435684 | + | mRNA | protein_coding |
| 335292 | enst00000233078 | sg00000071626 | dazap1-201 | 19 | 1407613 | 1435687 | + | mRNA | protein_coding |
| 335292 | enst00000592522 | sg00000071626 | dazap1-211 | 19 | 1407613 | 1435687 | + | mRNA | protein_coding |
| 335356 | enst00000586579 | sg00000071626 | dazap1-204 | 19 | 1407677 | 1428903 | + | lnc_RNA | processed_transcript |
| 335359 | enst00000587079 | sg00000071626 | dazap1-205 | 19 | 1407680 | 1435683 | + | mRNA | protein_coding |
| 335414 | enst00000592453 | sg00000071626 | dazap1-210 | 19 | 1407735 | 1432690 | + | mRNA | protein_coding |
| -335916 | enst00000587513 | sg00000099864 | palm-205 | 19 | 735055 | 748326 | + | lnc_RNA | processed_transcript |
| -335938 | enst00000590161 | sg00000099864 | palm-207 | 19 | 735033 | 748329 | + | mRNA | protein_coding |
| -335941 | enst00000592155 | sg00000099864 | palm-208 | 19 | 735030 | 748329 | + | mRNA | protein_coding |
| 337503 | enst00000590419 | sg00000071626 | dazap1-209 | 19 | 1409824 | 1418709 | + | lnc_RNA | processed_transcript |
| -339879 | enst00000633534 | sg00000099864 | palm-211 | 19 | 731092 | 746927 | + | lnc_RNA | retained_intron |
| -343185 | enst00000593172 | sg00000099864 | palm-210 | 19 | 727786 | 748329 | + | lnc_RNA | processed_transcript |
| 343419 | enst00000587833 | sg00000071626 | dazap1-206 | 19 | 1415740 | 1421232 | + | lnc_RNA | processed_transcript |
| 343649 | enst00000589484 | sg00000071626 | dazap1-207 | 19 | 1415970 | 1435687 | + | lnc_RNA | retained_intron |
| -348467 | enst00000586776 | sg00000099864 | palm-204 | 19 | 722504 | 727088 | + | lnc_RNA | processed_transcript |
| -351871 | enst00000586055 | sg00000099864 | palm-203 | 19 | 719100 | 726173 | + | mRNA | protein_coding |
| 354028 | enst00000585485 | sg00000071626 | dazap1-203 | 19 | 1426349 | 1435684 | + | lnc_RNA | retained_intron |
| 359722 | enst00000589874 | sg00000071626 | dazap1-208 | 19 | 1432043 | 1435684 | + | lnc_RNA | retained_intron |
| -361840 | enst00000589012 | sg00000099864 | palm-206 | 19 | 709131 | 736139 | + | lnc_RNA | retained_intron |
| -361874 | enst00000592870 | sg00000099864 | palm-209 | 19 | 709097 | 735048 | + | lnc_RNA | retained_intron |
| -362032 | enst00000264560 | sg00000099864 | palm-201 | 19 | 708939 | 748329 | + | mRNA | protein_coding |
| -362036 | enst00000338448 | sg00000099864 | palm-202 | 19 | 708935 | 748329 | + | mRNA | protein_coding |
| 366037 | enst00000233609 | sg00000115268 | rps15-201 | 19 | 1438358 | 1440494 | + | mRNA | protein_coding |
| 366064 | enst00000586686 | sg00000115268 | rps15-205 | 19 | 1438385 | 1440494 | + | mRNA | protein_coding |
| 366065 | enst00000592588 | sg00000115268 | rps15-209 | 19 | 1438386 | 1440494 | + | mRNA | protein_coding |
| 366079 | enst00000591032 | sg00000115268 | rps15-207 | 19 | 1438400 | 1440490 | + | mRNA | protein_coding |
| 366080 | enst00000592623 | sg00000115268 | rps15-210 | 19 | 1438401 | 1440494 | + | mRNA | protein_coding |
| 366084 | enst00000586656 | sg00000115268 | rps15-204 | 19 | 1438405 | 1440233 | + | mRNA | protein_coding |
| 366084 | enst00000589656 | sg00000115268 | rps15-206 | 19 | 1438405 | 1440488 | + | mRNA | protein_coding |
| 366085 | enst00000591804 | sg00000115268 | rps15-208 | 19 | 1438406 | 1440494 | + | mRNA | protein_coding |
| 366098 | enst00000593052 | sg00000115268 | rps15-212 | 19 | 1438419 | 1440494 | + | mRNA | protein_coding |
| 366099 | enst00000592700 | sg00000115268 | rps15-211 | 19 | 1438420 | 1440494 | + | lnc_RNA | retained_intron |
| 366100 | enst00000586096 | sg00000115268 | rps15-203 | 19 | 1438421 | 1440494 | + | mRNA | protein_coding |
| 366101 | enst00000617694 | sg00000115268 | rps15-213 | 19 | 1438422 | 1440049 | + | mRNA | protein_coding |
| 366101 | enst00000585665 | sg00000115268 | rps15-202 | 19 | 1438422 | 1440494 | + | mRNA | protein_coding |
| 368518 | enst00000594262 | sg00000268798 | ac027307.3-201 | 19 | 1440839 | 1441938 | + | lnc_RNA | lncrna |
| 373981 | enst00000587869 | sg00000115266 | apc2-205 | 19 | 1446302 | 1455245 | + | mRNA | protein_coding |
| -375473 | enst00000613411 | sg00000185198 | prss57-202 | 19 | 685546 | 695498 | - | mRNA | protein_coding |
| -375510 | enst00000329267 | sg00000185198 | prss57-201 | 19 | 685571 | 695461 | - | mRNA | protein_coding |
| 377828 | enst00000590469 | sg00000115266 | apc2-206 | 19 | 1450149 | 1465409 | + | mRNA | protein_coding |
| 377828 | enst00000590877 | sg00000115266 | apc2-207 | 19 | 1450149 | 1455445 | + | mRNA | protein_coding |
| 377828 | enst00000233607 | sg00000115266 | apc2-201 | 19 | 1450149 | 1473244 | + | mRNA | protein_coding |
| 377974 | enst00000593146 | sg00000115266 | apc2-208 | 19 | 1450295 | 1465418 | + | lnc_RNA | retained_intron |
| 378968 | enst00000535453 | sg00000115266 | apc2-203 | 19 | 1451289 | 1473244 | + | mRNA | protein_coding |
| 379877 | enst00000587149 | sg00000115266 | apc2-204 | 19 | 1452198 | 1453614 | + | mRNA | protein_coding |
| 380479 | enst00000238483 | sg00000115266 | apc2-202 | 19 | 1452800 | 1465496 | + | mRNA | protein_coding |
| -380618 | enst00000469610 | sg00000213726 | rps2p52-201 | 19 | 690353 | 691172 | + | pseudogenic_transcript | processed_pseudogene |
| 386259 | enst00000591252 | sg00000267317 | ac027307.2-201 | 19 | 1457670 | 1458580 | - | lnc_RNA | lncrna |
| -390220 | enst00000605925 | sg00000070404 | fstl3-207 | 19 | 680751 | 682107 | + | mRNA | protein_coding |
| -390220 | enst00000591573 | sg00000070404 | fstl3-204 | 19 | 680751 | 681771 | + | mRNA | protein_coding |
| -390256 | enst00000588773 | sg00000070404 | fstl3-202 | 19 | 680715 | 682107 | + | mRNA | protein_coding |
| -390264 | enst00000592947 | sg00000070404 | fstl3-206 | 19 | 680707 | 683392 | + | mRNA | protein_coding |
| -390937 | enst00000589185 | sg00000070404 | fstl3-203 | 19 | 680034 | 681413 | + | mRNA | protein_coding |
| -392910 | enst00000592058 | sg00000070404 | fstl3-205 | 19 | 678061 | 681771 | + | lnc_RNA | processed_transcript |
| -394579 | enst00000166139 | sg00000070404 | fstl3-201 | 19 | 676392 | 683385 | + | mRNA | protein_coding |
| 404164 | enst00000592486 | sg00000119559 | c19orf25-211 | 19 | 1474172 | 1476485 | - | lnc_RNA | retained_intron |
| 406576 | enst00000590621 | sg00000119559 | c19orf25-209 | 19 | 1474479 | 1478897 | - | mRNA | protein_coding |
| 406595 | enst00000588849 | sg00000119559 | c19orf25-206 | 19 | 1474186 | 1478916 | - | mRNA | protein_coding |
| 406797 | enst00000436106 | sg00000119559 | c19orf25-202 | 19 | 1473201 | 1479118 | - | mRNA | protein_coding |
| 406813 | enst00000589421 | sg00000119559 | c19orf25-208 | 19 | 1478435 | 1479134 | - | lnc_RNA | retained_intron |
| 406860 | enst00000586564 | sg00000119559 | c19orf25-204 | 19 | 1474168 | 1479181 | - | mRNA | protein_coding |
| 406862 | enst00000592872 | sg00000119559 | c19orf25-213 | 19 | 1474174 | 1479183 | - | mRNA | protein_coding |
| 406873 | enst00000588871 | sg00000119559 | c19orf25-207 | 19 | 1473204 | 1479194 | - | mRNA | protein_coding |
| 406880 | enst00000588427 | sg00000119559 | c19orf25-205 | 19 | 1461143 | 1479201 | - | mRNA | protein_coding |
| 406892 | enst00000591027 | sg00000119559 | c19orf25-210 | 19 | 1475904 | 1479213 | - | mRNA | protein_coding |
| 406894 | enst00000651077 | sg00000119559 | c19orf25-214 | 19 | 1474176 | 1479215 | - | mRNA | protein_coding |
| 406895 | enst00000427685 | sg00000119559 | c19orf25-201 | 19 | 1474155 | 1479216 | - | mRNA | protein_coding |
| 406898 | enst00000592605 | sg00000119559 | c19orf25-212 | 19 | 1478413 | 1479219 | - | lnc_RNA | processed_transcript |
| 407235 | enst00000585675 | sg00000119559 | c19orf25-203 | 19 | 1473948 | 1479556 | - | mRNA | protein_coding |
| -407489 | enst00000591866 | sg00000267666 | ac004156.1-201 | 19 | 663482 | 669500 | + | lnc_RNA | lncrna |
| -407738 | enst00000589762 | sg00000070423 | rnf126-203 | 19 | 648132 | 663233 | - | mRNA | protein_coding |
| -407757 | enst00000292363 | sg00000070423 | rnf126-201 | 19 | 647526 | 663214 | - | mRNA | protein_coding |
| -407777 | enst00000605891 | sg00000070423 | rnf126-207 | 19 | 647526 | 663194 | - | mRNA | nonsense_mediated_decay |
| -407786 | enst00000591394 | sg00000070423 | rnf126-205 | 19 | 651385 | 663185 | - | lnc_RNA | retained_intron |
| -407800 | enst00000592626 | sg00000070423 | rnf126-206 | 19 | 652358 | 663171 | - | lnc_RNA | retained_intron |
| -409569 | enst00000590885 | sg00000070423 | rnf126-204 | 19 | 647529 | 661402 | - | lnc_RNA | processed_transcript |
| 410346 | enst00000586074 | sg00000115257 | pcsk4-204 | 19 | 1481986 | 1482667 | - | lnc_RNA | retained_intron |
| 411523 | enst00000591303 | sg00000115257 | pcsk4-211 | 19 | 1482439 | 1483844 | - | lnc_RNA | retained_intron |
| 411806 | enst00000586002 | sg00000115257 | pcsk4-203 | 19 | 1483498 | 1484127 | - | lnc_RNA | retained_intron |
| 417863 | enst00000614078 | sg00000115257 | pcsk4-213 | 19 | 1487848 | 1490184 | - | lnc_RNA | retained_intron |
| 418014 | enst00000591201 | sg00000115257 | pcsk4-210 | 19 | 1481428 | 1490335 | - | mRNA | nonsense_mediated_decay |
| 418021 | enst00000441747 | sg00000115257 | pcsk4-202 | 19 | 1481428 | 1490342 | - | lnc_RNA | retained_intron |
| 418056 | enst00000588671 | sg00000115257 | pcsk4-208 | 19 | 1487218 | 1490377 | - | mRNA | protein_coding |
| 418084 | enst00000588195 | sg00000115257 | pcsk4-207 | 19 | 1482411 | 1490405 | - | lnc_RNA | retained_intron |
| 418087 | enst00000300954 | sg00000115257 | pcsk4-201 | 19 | 1481428 | 1490408 | - | mRNA | protein_coding |
| 418090 | enst00000586616 | sg00000115257 | pcsk4-205 | 19 | 1481428 | 1490411 | - | lnc_RNA | retained_intron |
| 418125 | enst00000591687 | sg00000115257 | pcsk4-212 | 19 | 1487964 | 1490446 | - | lnc_RNA | processed_transcript |
| 418416 | enst00000590057 | sg00000115257 | pcsk4-209 | 19 | 1487293 | 1490737 | - | lnc_RNA | processed_transcript |
| 418431 | enst00000587784 | sg00000115257 | pcsk4-206 | 19 | 1487198 | 1490752 | - | lnc_RNA | processed_transcript |
| 418845 | enst00000591735 | sg00000115255 | reep6-204 | 19 | 1491166 | 1496181 | + | lnc_RNA | retained_intron |
| 418860 | enst00000233596 | sg00000115255 | reep6-201 | 19 | 1491181 | 1497927 | + | mRNA | protein_coding |
| 418949 | enst00000395479 | sg00000115255 | reep6-202 | 19 | 1491270 | 1497211 | + | mRNA | protein_coding |
| -420377 | enst00000586749 | sg00000070423 | rnf126-202 | 19 | 647530 | 650594 | - | lnc_RNA | retained_intron |
| 423155 | enst00000395484 | sg00000115255 | reep6-203 | 19 | 1495476 | 1497721 | + | mRNA | nonsense_mediated_decay |
| -431076 | enst00000586042 | sg00000070388 | fgf22-202 | 19 | 639895 | 644371 | + | mRNA | protein_coding |
| -431076 | enst00000215530 | sg00000070388 | fgf22-201 | 19 | 639895 | 644371 | + | mRNA | protein_coding |
| -431092 | enst00000591390 | sg00000070388 | fgf22-203 | 19 | 639879 | 641590 | + | lnc_RNA | retained_intron |
| -433434 | enst00000564240 | sg00000261204 | ac004449.1-201 | 19 | 637105 | 637537 | - | lnc_RNA | lncrna |
| 433674 | enst00000591077 | sg00000185761 | adamtsl5-211 | 19 | 1505041 | 1505995 | - | lnc_RNA | processed_transcript |
| 435101 | enst00000590682 | sg00000185761 | adamtsl5-210 | 19 | 1506626 | 1507422 | - | lnc_RNA | retained_intron |
| 435275 | enst00000590090 | sg00000185761 | adamtsl5-207 | 19 | 1506739 | 1507596 | - | mRNA | protein_coding |
| 435702 | enst00000673796 | sg00000185988 | plk5-208 | 19 | 1508023 | 1535286 | + | mRNA | protein_coding |
| 436054 | enst00000590252 | sg00000267092 | ac027307.1-201 | 19 | 1508375 | 1508963 | + | lnc_RNA | lncrna |
| -437434 | enst00000588649 | sg00000099821 | polrmt-202 | 19 | 617221 | 633537 | - | mRNA | protein_coding |
| -437446 | enst00000592863 | sg00000099821 | polrmt-208 | 19 | 629636 | 633525 | - | mRNA | nonsense_mediated_decay |
| 438815 | enst00000585700 | sg00000185761 | adamtsl5-203 | 19 | 1505867 | 1511136 | - | lnc_RNA | processed_transcript |
| 438815 | enst00000590440 | sg00000185761 | adamtsl5-208 | 19 | 1505867 | 1511136 | - | lnc_RNA | processed_transcript |
| 440698 | enst00000330475 | sg00000185761 | adamtsl5-201 | 19 | 1505022 | 1513019 | - | mRNA | protein_coding |
| 440698 | enst00000590562 | sg00000185761 | adamtsl5-209 | 19 | 1508538 | 1513019 | - | mRNA | protein_coding |
| 440698 | enst00000586272 | sg00000185761 | adamtsl5-205 | 19 | 1507998 | 1513019 | - | mRNA | protein_coding |
| -440802 | enst00000590573 | sg00000099821 | polrmt-205 | 19 | 623467 | 630169 | - | mRNA | protein_coding |
| 440868 | enst00000395467 | sg00000185761 | adamtsl5-202 | 19 | 1506262 | 1513189 | - | mRNA | protein_coding |
| 441235 | enst00000589839 | sg00000185761 | adamtsl5-206 | 19 | 1508813 | 1513556 | - | lnc_RNA | processed_transcript |
| 441283 | enst00000585804 | sg00000185761 | adamtsl5-204 | 19 | 1510150 | 1513604 | - | mRNA | protein_coding |
| -445462 | enst00000590709 | sg00000099821 | polrmt-206 | 19 | 622535 | 625509 | - | lnc_RNA | retained_intron |
| -451745 | enst00000589961 | sg00000099821 | polrmt-203 | 19 | 617646 | 619226 | - | lnc_RNA | retained_intron |
| 451756 | enst00000454744 | sg00000185988 | plk5-202 | 19 | 1524077 | 1536046 | + | mRNA | protein_coding |
| 451756 | enst00000642079 | sg00000185988 | plk5-205 | 19 | 1524077 | 1535457 | + | mRNA | protein_coding |
| 451756 | enst00000588430 | sg00000185988 | plk5-204 | 19 | 1524077 | 1536046 | + | mRNA | protein_coding |
| -451955 | enst00000590336 | sg00000099821 | polrmt-204 | 19 | 617431 | 619016 | - | mRNA | protein_coding |
| -452213 | enst00000587057 | sg00000099821 | polrmt-201 | 19 | 617228 | 618758 | - | lnc_RNA | retained_intron |
| 452566 | enst00000334770 | sg00000185988 | plk5-201 | 19 | 1524887 | 1535456 | + | mRNA | protein_coding |
| -452974 | enst00000592633 | sg00000099821 | polrmt-207 | 19 | 617224 | 617997 | - | lnc_RNA | retained_intron |
| 453030 | enst00000673896 | sg00000185988 | plk5-210 | 19 | 1525351 | 1535296 | + | mRNA | protein_coding |
| 454138 | enst00000673674 | sg00000185988 | plk5-207 | 19 | 1526459 | 1535455 | + | lnc_RNA | processed_transcript |
| 456016 | enst00000588292 | sg00000185988 | plk5-203 | 19 | 1528337 | 1529048 | + | lnc_RNA | retained_intron |
| 456017 | enst00000673648 | sg00000185988 | plk5-206 | 19 | 1528338 | 1535107 | + | mRNA | protein_coding |
| 456048 | enst00000673829 | sg00000185988 | plk5-209 | 19 | 1528369 | 1531748 | + | lnc_RNA | retained_intron |
| -479671 | enst00000589661 | sg00000267036 | ac005559.1-201 | 19 | 590430 | 591300 | - | pseudogenic_transcript | processed_pseudogene |
| -481090 | enst00000251287 | sg00000099822 | hcn2-201 | 19 | 589881 | 617159 | + | mRNA | protein_coding |
| -492121 | enst00000571735 | sg00000172270 | bsg-205 | 19 | 578850 | 583492 | + | lnc_RNA | retained_intron |
| 495209 | enst00000605173 | sg00000181588 | mex3d-202 | 19 | 1554672 | 1567530 | - | mRNA | protein_coding |
| 495737 | enst00000402693 | sg00000181588 | mex3d-201 | 19 | 1554669 | 1568058 | - | mRNA | protein_coding |
| -495758 | enst00000576984 | sg00000172270 | bsg-211 | 19 | 575213 | 580775 | + | mRNA | protein_coding |
| -495922 | enst00000574970 | sg00000172270 | bsg-209 | 19 | 575049 | 579629 | + | lnc_RNA | processed_transcript |
| -495924 | enst00000573784 | sg00000172270 | bsg-208 | 19 | 575047 | 581402 | + | mRNA | protein_coding |
| -498348 | enst00000614867 | sg00000172270 | bsg-214 | 19 | 572623 | 583487 | + | mRNA | protein_coding |
| -498352 | enst00000618006 | sg00000172270 | bsg-215 | 19 | 572619 | 583487 | + | mRNA | protein_coding |
| -498361 | enst00000613627 | sg00000172270 | bsg-213 | 19 | 572610 | 581543 | + | mRNA | protein_coding |
| -498375 | enst00000333511 | sg00000172270 | bsg-201 | 19 | 572596 | 583493 | + | mRNA | protein_coding |
| -498375 | enst00000618112 | sg00000172270 | bsg-216 | 19 | 572596 | 583360 | + | mRNA | nonsense_mediated_decay |
| -498375 | enst00000590218 | sg00000172270 | bsg-212 | 19 | 572596 | 578212 | + | lnc_RNA | retained_intron |
| -498377 | enst00000572899 | sg00000172270 | bsg-206 | 19 | 572594 | 580695 | + | lnc_RNA | retained_intron |
| -498393 | enst00000353555 | sg00000172270 | bsg-203 | 19 | 572578 | 583493 | + | mRNA | protein_coding |
| -498399 | enst00000573216 | sg00000172270 | bsg-207 | 19 | 572572 | 581376 | + | mRNA | protein_coding |
| -498399 | enst00000576925 | sg00000172270 | bsg-210 | 19 | 572572 | 579980 | + | lnc_RNA | retained_intron |
| 498539 | enst00000488440 | sg00000239367 | rn7sl477p-201 | 19 | 1570575 | 1570860 | - | ncRNA | misc_rna |
| -498743 | enst00000588290 | sg00000267751 | ac009005.1-204 | 19 | 567433 | 572228 | - | lnc_RNA | lncrna |
| -499226 | enst00000589457 | sg00000267751 | ac009005.1-201 | 19 | 567210 | 571745 | - | lnc_RNA | lncrna |
| -499235 | enst00000588908 | sg00000267751 | ac009005.1-202 | 19 | 567221 | 571736 | - | lnc_RNA | lncrna |
| -499237 | enst00000590292 | sg00000267751 | ac009005.1-203 | 19 | 567311 | 571734 | - | lnc_RNA | lncrna |
| -499661 | enst00000346916 | sg00000172270 | bsg-202 | 19 | 571310 | 583493 | + | mRNA | protein_coding |
| -499694 | enst00000545507 | sg00000172270 | bsg-204 | 19 | 571277 | 583493 | + | mRNA | protein_coding |
Source file: /hps/research1/birney/users/adrien/analyses/cancer_DNA_promethion/run_1_2_3_4/DNA_pipeline_2/results/methylation/pycometh_meth_comp_CGI_3/out.tsv.gz
MD5 hash: 9aa0e3f69cb4e12345c3758eb68a5efc