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CpG interval report generated on 20/05/20 with pycoMeth 0.4.6
Interval details
| pvalue rank | chromosome | start | end | length | number of samples | number of CpGs | pvalue | adjusted pvalue |
|---|---|---|---|---|---|---|---|---|
| #85 | 15 | 82679964 | 82681226 | 1262 | 3 | 45 | 1.37045e-18 | 1.60342e-16 |
Methylation log-likelihood ratio by CpG position
Distribution of CpG methylation log-likelihood ratio by sample
Closest transcripts TSS
| distance to tss | transcript id | gene id | transcript name | chromosome | start | end | strand | feature type | transcript biotype |
|---|---|---|---|---|---|---|---|---|---|
| 0 | enst00000666894 | sg00000103723 | ap3b2-225 | 15 | 82676951 | 82680410 | - | mRNA | protein_coding |
| 0 | enst00000660624 | sg00000103723 | ap3b2-218 | 15 | 82659282 | 82680407 | - | mRNA | protein_coding |
| 0 | enst00000669880 | sg00000103723 | ap3b2-231 | 15 | 82676506 | 82680398 | - | lnc_RNA | processed_transcript |
| 0 | enst00000661532 | sg00000103723 | ap3b2-219 | 15 | 82659348 | 82680753 | - | mRNA | nonsense_mediated_decay |
| 271 | enst00000666672 | sg00000103723 | ap3b2-224 | 15 | 82680732 | 82681497 | - | lnc_RNA | retained_intron |
| 335 | enst00000668458 | sg00000103723 | ap3b2-229 | 15 | 82659955 | 82681561 | - | mRNA | nonsense_mediated_decay |
| 375 | enst00000559888 | sg00000103723 | ap3b2-210 | 15 | 82680732 | 82681601 | - | lnc_RNA | retained_intron |
| -2510 | enst00000659252 | sg00000103723 | ap3b2-217 | 15 | 82676461 | 82677454 | - | lnc_RNA | retained_intron |
| -3340 | enst00000665513 | sg00000103723 | ap3b2-222 | 15 | 82675705 | 82676624 | - | mRNA | protein_coding |
| 11132 | enst00000560043 | sg00000259707 | ac105339.4-201 | 15 | 82691723 | 82692358 | - | pseudogenic_transcript | processed_pseudogene |
| 18014 | enst00000541693 | sg00000103723 | ap3b2-207 | 15 | 82680897 | 82699240 | - | mRNA | protein_coding |
| 18675 | enst00000642989 | sg00000103723 | ap3b2-214 | 15 | 82659281 | 82699901 | - | mRNA | protein_coding |
| 27625 | enst00000561455 | sg00000103723 | ap3b2-212 | 15 | 82686815 | 82708851 | - | lnc_RNA | processed_transcript |
| 27717 | enst00000663651 | sg00000103723 | ap3b2-220 | 15 | 82659300 | 82708943 | - | lnc_RNA | processed_transcript |
| 27804 | enst00000537735 | sg00000103723 | ap3b2-206 | 15 | 82659292 | 82709030 | - | lnc_RNA | processed_transcript |
| 28553 | enst00000535348 | sg00000103723 | ap3b2-202 | 15 | 82659532 | 82709779 | - | mRNA | protein_coding |
| 28565 | enst00000657321 | sg00000103723 | ap3b2-216 | 15 | 82659495 | 82709791 | - | mRNA | nonsense_mediated_decay |
| 28597 | enst00000666973 | sg00000103723 | ap3b2-226 | 15 | 82659367 | 82709823 | - | mRNA | protein_coding |
| 28617 | enst00000664460 | sg00000103723 | ap3b2-221 | 15 | 82675742 | 82709843 | - | mRNA | protein_coding |
| 28621 | enst00000669930 | sg00000103723 | ap3b2-232 | 15 | 82659318 | 82709847 | - | mRNA | protein_coding |
| 28633 | enst00000542200 | sg00000103723 | ap3b2-208 | 15 | 82685091 | 82709859 | - | mRNA | protein_coding |
| 28639 | enst00000560529 | sg00000103723 | ap3b2-211 | 15 | 82689400 | 82709865 | - | lnc_RNA | processed_transcript |
| 28649 | enst00000535359 | sg00000103723 | ap3b2-203 | 15 | 82659281 | 82709875 | - | mRNA | protein_coding |
| 28649 | enst00000652847 | sg00000103723 | ap3b2-215 | 15 | 82659295 | 82709875 | - | mRNA | protein_coding |
| 28649 | enst00000668990 | sg00000103723 | ap3b2-230 | 15 | 82659281 | 82709875 | - | mRNA | protein_coding |
| 28657 | enst00000535385 | sg00000103723 | ap3b2-204 | 15 | 82659552 | 82709883 | - | lnc_RNA | retained_intron |
| 28661 | enst00000666055 | sg00000103723 | ap3b2-223 | 15 | 82676916 | 82709887 | - | mRNA | protein_coding |
| 28682 | enst00000620652 | sg00000103723 | ap3b2-213 | 15 | 82659282 | 82709908 | - | mRNA | protein_coding |
| 28683 | enst00000543938 | sg00000103723 | ap3b2-209 | 15 | 82659285 | 82709909 | - | lnc_RNA | retained_intron |
| 28689 | enst00000667758 | sg00000103723 | ap3b2-227 | 15 | 82659312 | 82709915 | - | mRNA | nonsense_mediated_decay |
| 28693 | enst00000261722 | sg00000103723 | ap3b2-201 | 15 | 82659302 | 82709919 | - | mRNA | protein_coding |
| 28693 | enst00000535513 | sg00000103723 | ap3b2-205 | 15 | 82685914 | 82709919 | - | mRNA | protein_coding |
| 28720 | enst00000668385 | sg00000103723 | ap3b2-228 | 15 | 82659513 | 82709946 | - | mRNA | nonsense_mediated_decay |
| -29935 | enst00000618020 | sg00000259462 | cpeb1-as1-202 | 15 | 82650029 | 82653022 | + | lnc_RNA | lncrna |
| 30651 | enst00000636249 | sg00000228141 | ac105339.1-204 | 15 | 82711246 | 82711877 | - | pseudogenic_transcript | transcribed_unitary_pseudogene |
| -31103 | enst00000566716 | sg00000214575 | cpeb1-202 | 15 | 82627289 | 82648861 | - | lnc_RNA | processed_transcript |
| -31199 | enst00000654760 | sg00000259462 | cpeb1-as1-203 | 15 | 82648765 | 82650829 | + | lnc_RNA | lncrna |
| -31586 | enst00000563519 | sg00000214575 | cpeb1-201 | 15 | 82633182 | 82648378 | - | lnc_RNA | processed_transcript |
| -31987 | enst00000615198 | sg00000214575 | cpeb1-211 | 15 | 82544273 | 82647977 | - | mRNA | protein_coding |
| -32194 | enst00000560650 | sg00000259462 | cpeb1-as1-201 | 15 | 82647770 | 82692820 | + | lnc_RNA | lncrna |
| -32359 | enst00000620182 | sg00000214575 | cpeb1-218 | 15 | 82544310 | 82647605 | - | mRNA | protein_coding |
| -32461 | enst00000567678 | sg00000214575 | cpeb1-203 | 15 | 82571446 | 82647503 | - | mRNA | protein_coding |
| -32605 | enst00000617522 | sg00000214575 | cpeb1-214 | 15 | 82544358 | 82647359 | - | mRNA | protein_coding |
| 32767 | enst00000440089 | sg00000228141 | ac105339.1-201 | 15 | 82710471 | 82713993 | - | lnc_RNA | processed_transcript |
| 32800 | enst00000440479 | sg00000228141 | ac105339.1-203 | 15 | 82710473 | 82714026 | - | lnc_RNA | processed_transcript |
| 32803 | enst00000559535 | sg00000228141 | ac105339.1-202 | 15 | 82710471 | 82714029 | - | lnc_RNA | processed_transcript |
| -32841 | enst00000569257 | sg00000214575 | cpeb1-205 | 15 | 82571391 | 82647123 | - | mRNA | protein_coding |
| 46199 | enst00000558391 | sg00000259315 | actg1p17-201 | 15 | 82726307 | 82727425 | - | pseudogenic_transcript | transcribed_processed_pseudogene |
| -49779 | enst00000614918 | sg00000214575 | cpeb1-209 | 15 | 82543203 | 82630185 | - | mRNA | protein_coding |
| -51495 | enst00000617958 | sg00000214575 | cpeb1-215 | 15 | 82543834 | 82628469 | - | mRNA | protein_coding |
| -51812 | enst00000611031 | sg00000214575 | cpeb1-207 | 15 | 82543204 | 82628152 | - | mRNA | protein_coding |
| 57160 | enst00000624471 | sg00000279758 | ac105339.5-201 | 15 | 82738386 | 82739122 | + | unconfirmed_transcript | tec |
| 57390 | enst00000560958 | sg00000259315 | actg1p17-202 | 15 | 82725873 | 82738616 | - | lnc_RNA | processed_transcript |
| 57678 | enst00000561222 | sg00000259315 | actg1p17-203 | 15 | 82730790 | 82738904 | - | lnc_RNA | processed_transcript |
| 62997 | enst00000558342 | sg00000259442 | ac105339.3-201 | 15 | 82744223 | 82750289 | + | lnc_RNA | lncrna |
| 69229 | enst00000661203 | sg00000286817 | ac105339.6-201 | 15 | 82749252 | 82750455 | - | lnc_RNA | lncrna |
| 69338 | enst00000544685 | sg00000250988 | snhg21-201 | 15 | 82750564 | 82754937 | + | lnc_RNA | lncrna |
| 69340 | enst00000558687 | sg00000250988 | snhg21-203 | 15 | 82750566 | 82755037 | + | lnc_RNA | lncrna |
| 69346 | enst00000561107 | sg00000250988 | snhg21-205 | 15 | 82750572 | 82757204 | + | lnc_RNA | lncrna |
| 69357 | enst00000558174 | sg00000250988 | snhg21-202 | 15 | 82750583 | 82757206 | + | lnc_RNA | lncrna |
| 69358 | enst00000559366 | sg00000250988 | snhg21-204 | 15 | 82750584 | 82757206 | + | lnc_RNA | lncrna |
| 71658 | enst00000607520 | sg00000252690 | ac105339.2-201 | 15 | 82752884 | 82757208 | + | lnc_RNA | retained_intron |
| 74719 | enst00000516881 | sg00000277864 | scarna15-201 | 15 | 82755945 | 82756071 | + | scRNA | scarna |
| -106753 | enst00000616959 | sg00000214575 | cpeb1-212 | 15 | 82544295 | 82573211 | - | mRNA | protein_coding |
| -106770 | enst00000642270 | sg00000260836 | ac245033.1-202 | 15 | 82536788 | 82573194 | - | mRNA | nonsense_mediated_decay |
| -107886 | enst00000568994 | sg00000214575 | cpeb1-204 | 15 | 82557799 | 82572078 | - | mRNA | protein_coding |
| -108141 | enst00000618449 | sg00000214575 | cpeb1-216 | 15 | 82543834 | 82571823 | - | mRNA | protein_coding |
| -108155 | enst00000617462 | sg00000214575 | cpeb1-213 | 15 | 82544297 | 82571809 | - | mRNA | protein_coding |
| -108180 | enst00000614977 | sg00000214575 | cpeb1-210 | 15 | 82544453 | 82571784 | - | mRNA | nonsense_mediated_decay |
| -108205 | enst00000611163 | sg00000214575 | cpeb1-208 | 15 | 82544295 | 82571759 | - | mRNA | protein_coding |
| -108223 | enst00000562833 | sg00000260836 | ac245033.1-201 | 15 | 82536788 | 82571741 | - | mRNA | protein_coding |
| -108517 | enst00000570205 | sg00000214575 | cpeb1-206 | 15 | 82557522 | 82571447 | - | lnc_RNA | retained_intron |
| -123428 | enst00000618698 | sg00000214575 | cpeb1-217 | 15 | 82543201 | 82556536 | - | lnc_RNA | retained_intron |
| 124828 | enst00000541889 | sg00000186628 | fsd2-202 | 15 | 82759274 | 82806054 | - | mRNA | protein_coding |
| 124843 | enst00000334574 | sg00000186628 | fsd2-201 | 15 | 82755362 | 82806069 | - | mRNA | protein_coding |
| 124844 | enst00000561368 | sg00000186628 | fsd2-203 | 15 | 82787088 | 82806070 | - | mRNA | protein_coding |
| 128402 | enst00000286760 | sg00000156232 | whamm-201 | 15 | 82809628 | 82836108 | + | mRNA | protein_coding |
| 136694 | enst00000560964 | sg00000156232 | whamm-202 | 15 | 82817920 | 82826794 | + | lnc_RNA | retained_intron |
| -139094 | enst00000621893 | sg00000278013 | ac245033.2-201 | 15 | 82540870 | 82562374 | + | lnc_RNA | lncrna |
| -139505 | enst00000561157 | sg00000182774 | rps17-208 | 15 | 82536755 | 82540459 | - | mRNA | protein_coding |
| -139507 | enst00000647841 | sg00000182774 | rps17-209 | 15 | 82536750 | 82540457 | - | mRNA | protein_coding |
| -139507 | enst00000560229 | sg00000182774 | rps17-204 | 15 | 82538887 | 82540457 | - | lnc_RNA | retained_intron |
| -139508 | enst00000559273 | sg00000182774 | rps17-202 | 15 | 82539584 | 82540456 | - | lnc_RNA | retained_intron |
| -139512 | enst00000560639 | sg00000182774 | rps17-206 | 15 | 82536809 | 82540452 | - | lnc_RNA | retained_intron |
| -139527 | enst00000558397 | sg00000182774 | rps17-201 | 15 | 82536756 | 82540437 | - | mRNA | non_stop_decay |
| -139545 | enst00000559776 | sg00000182774 | rps17-203 | 15 | 82538665 | 82540419 | - | lnc_RNA | retained_intron |
| -139822 | enst00000560612 | sg00000182774 | rps17-205 | 15 | 82536763 | 82540142 | - | lnc_RNA | retained_intron |
| -139833 | enst00000561068 | sg00000182774 | rps17-207 | 15 | 82536759 | 82540131 | - | mRNA | nonsense_mediated_decay |
| -139956 | enst00000561440 | sg00000284803 | ac245033.4-201 | 15 | 82533175 | 82540008 | - | lnc_RNA | lncrna |
| -145825 | enst00000560794 | sg00000259637 | dnm1p38-201 | 15 | 82531653 | 82534139 | - | pseudogenic_transcript | unprocessed_pseudogene |
| -160310 | enst00000614358 | sg00000277741 | golga6l17p-202 | 15 | 82519654 | 82526412 | + | pseudogenic_transcript | transcribed_unprocessed_pseudogene |
| -160374 | enst00000611297 | sg00000277741 | golga6l17p-201 | 15 | 82519590 | 82523693 | + | lnc_RNA | processed_transcript |
| -166014 | enst00000618004 | sg00000255769 | golga2p10-204 | 15 | 82472993 | 82513950 | - | lnc_RNA | processed_transcript |
| -166014 | enst00000618267 | sg00000255769 | golga2p10-205 | 15 | 82473785 | 82513950 | - | lnc_RNA | processed_transcript |
| -166060 | enst00000619738 | sg00000255769 | golga2p10-206 | 15 | 82477093 | 82513904 | - | lnc_RNA | processed_transcript |
| -166090 | enst00000612379 | sg00000255769 | golga2p10-202 | 15 | 82476899 | 82513874 | - | lnc_RNA | processed_transcript |
| -166120 | enst00000614347 | sg00000255769 | golga2p10-203 | 15 | 82473420 | 82513844 | - | lnc_RNA | processed_transcript |
| 168501 | enst00000558090 | sg00000103942 | homer2-204 | 15 | 82836946 | 82849727 | - | mRNA | protein_coding |
| 171557 | enst00000558552 | sg00000103942 | homer2-205 | 15 | 82849679 | 82852783 | - | lnc_RNA | retained_intron |
| 183033 | enst00000558817 | sg00000103942 | homer2-206 | 15 | 82851196 | 82864259 | - | mRNA | protein_coding |
| -202038 | enst00000550961 | sg00000255769 | golga2p10-201 | 15 | 82476498 | 82477926 | - | pseudogenic_transcript | transcribed_unprocessed_pseudogene |
| -207761 | enst00000617986 | sg00000278603 | ac245033.3-201 | 15 | 82472203 | 82472426 | + | pseudogenic_transcript | unprocessed_pseudogene |
| -215256 | enst00000612093 | sg00000276710 | cspg4p10-202 | 15 | 82464708 | 82477258 | + | lnc_RNA | processed_transcript |
| 217227 | enst00000561345 | sg00000103942 | homer2-208 | 15 | 82854695 | 82898453 | - | lnc_RNA | processed_transcript |
| -220492 | enst00000456932 | sg00000276710 | cspg4p10-201 | 15 | 82459472 | 82470008 | + | pseudogenic_transcript | transcribed_unprocessed_pseudogene |
| -234231 | enst00000617217 | sg00000275695 | ube2q2p6-202 | 15 | 82445733 | 82454837 | + | lnc_RNA | processed_transcript |
| -234245 | enst00000612666 | sg00000275695 | ube2q2p6-201 | 15 | 82445719 | 82454712 | + | pseudogenic_transcript | transcribed_unprocessed_pseudogene |
| 244658 | enst00000566841 | sg00000259805 | ac022558.2-201 | 15 | 82925884 | 83103443 | + | lnc_RNA | lncrna |
| -249919 | enst00000618706 | sg00000197978 | golga6l9-203 | 15 | 82430045 | 82439153 | + | lnc_RNA | retained_intron |
| -249944 | enst00000618348 | sg00000197978 | golga6l9-202 | 15 | 82430020 | 82436762 | + | mRNA | protein_coding |
| -249946 | enst00000558668 | sg00000197978 | golga6l9-201 | 15 | 82430018 | 82432217 | + | lnc_RNA | retained_intron |
| -261313 | enst00000613086 | sg00000278202 | ac243919.2-201 | 15 | 82418651 | 82434235 | + | lnc_RNA | lncrna |
| -265177 | enst00000558542 | sg00000259429 | ube2q2p2-201 | 15 | 82414787 | 82419391 | + | lnc_RNA | processed_transcript |
| -265283 | enst00000561287 | sg00000259429 | ube2q2p2-202 | 15 | 82414681 | 82416003 | + | lnc_RNA | processed_transcript |
| 271494 | enst00000450735 | sg00000103942 | homer2-202 | 15 | 82848983 | 82952720 | - | mRNA | protein_coding |
| 271502 | enst00000304231 | sg00000103942 | homer2-201 | 15 | 82848983 | 82952728 | - | mRNA | protein_coding |
| -288120 | enst00000613592 | sg00000259429 | ube2q2p2-203 | 15 | 82391844 | 82420075 | + | pseudogenic_transcript | transcribed_unprocessed_pseudogene |
| 304642 | enst00000500334 | sg00000103942 | homer2-203 | 15 | 82958130 | 82985868 | - | lnc_RNA | processed_transcript |
| 304844 | enst00000619240 | sg00000103942 | homer2-209 | 15 | 82985553 | 82986070 | - | lnc_RNA | processed_transcript |
| 304894 | enst00000560374 | sg00000103942 | homer2-207 | 15 | 82864213 | 82986120 | - | lnc_RNA | processed_transcript |
| 304927 | enst00000619367 | sg00000103942 | homer2-210 | 15 | 82892685 | 82986153 | - | lnc_RNA | processed_transcript |
| 304984 | enst00000304191 | sg00000169612 | ramac-201 | 15 | 82986210 | 82991057 | + | mRNA | protein_coding |
| -307052 | enst00000418824 | sg00000237550 | ac243919.1-201 | 15 | 82372196 | 82372912 | - | lnc_RNA | processed_transcript |
| -307076 | enst00000466501 | sg00000237550 | ac243919.1-202 | 15 | 82372310 | 82372888 | - | pseudogenic_transcript | transcribed_processed_pseudogene |
| -324822 | enst00000618775 | sg00000259429 | ube2q2p2-204 | 15 | 82355142 | 82414738 | + | lnc_RNA | processed_transcript |
| 327390 | enst00000514272 | sg00000169609 | c15orf40-208 | 15 | 82988441 | 83008616 | - | mRNA | protein_coding |
| 330317 | enst00000563387 | sg00000169609 | c15orf40-210 | 15 | 83004867 | 83011543 | - | mRNA | nonsense_mediated_decay |
| 330323 | enst00000512638 | sg00000169609 | c15orf40-207 | 15 | 82990561 | 83011549 | - | mRNA | nonsense_mediated_decay |
| 330359 | enst00000508990 | sg00000169609 | c15orf40-205 | 15 | 83004686 | 83011585 | - | mRNA | protein_coding |
| 330368 | enst00000505341 | sg00000169609 | c15orf40-203 | 15 | 83005298 | 83011594 | - | lnc_RNA | retained_intron |
| 330378 | enst00000510873 | sg00000169609 | c15orf40-206 | 15 | 82989106 | 83011604 | - | mRNA | protein_coding |
| 330381 | enst00000538348 | sg00000169609 | c15orf40-209 | 15 | 82988963 | 83011607 | - | mRNA | protein_coding |
| 330381 | enst00000451195 | sg00000169609 | c15orf40-202 | 15 | 82990619 | 83011607 | - | mRNA | protein_coding |
| 330384 | enst00000506912 | sg00000169609 | c15orf40-204 | 15 | 83007851 | 83011610 | - | lnc_RNA | retained_intron |
| 330413 | enst00000565725 | sg00000169609 | c15orf40-212 | 15 | 83008405 | 83011639 | - | lnc_RNA | retained_intron |
| 330413 | enst00000304177 | sg00000169609 | c15orf40-201 | 15 | 82994817 | 83011639 | - | mRNA | protein_coding |
| 330415 | enst00000565712 | sg00000169609 | c15orf40-211 | 15 | 83005279 | 83011641 | - | mRNA | protein_coding |
| -330489 | enst00000610657 | sg00000278662 | golga6l10-207 | 15 | 82339993 | 82349475 | - | mRNA | protein_coding |
| -330489 | enst00000619556 | sg00000278662 | golga6l10-208 | 15 | 82339998 | 82349475 | - | mRNA | protein_coding |
| -330527 | enst00000621197 | sg00000278662 | golga6l10-209 | 15 | 82339998 | 82349437 | - | mRNA | protein_coding |
| -330527 | enst00000558035 | sg00000278662 | golga6l10-206 | 15 | 82347242 | 82349437 | - | lnc_RNA | retained_intron |
| 331435 | enst00000570202 | sg00000260608 | ac024270.4-201 | 15 | 83012661 | 83061845 | + | lnc_RNA | lncrna |
| 338889 | enst00000616598 | sg00000273747 | ac022558.3-201 | 15 | 83020115 | 83020802 | + | lnc_RNA | lncrna |
| 341345 | enst00000568441 | sg00000260351 | ac024270.2-201 | 15 | 83022571 | 83090782 | + | lnc_RNA | lncrna |
| 343110 | enst00000560450 | sg00000259767 | ac022558.1-201 | 15 | 83022236 | 83024336 | - | lnc_RNA | lncrna |
| 349540 | enst00000558344 | sg00000064726 | btbd1-203 | 15 | 83020746 | 83030766 | - | lnc_RNA | retained_intron |
| 360595 | enst00000560015 | sg00000064726 | btbd1-205 | 15 | 83029543 | 83041821 | - | lnc_RNA | processed_transcript |
| 363142 | enst00000559181 | sg00000259308 | ac024270.1-201 | 15 | 83044368 | 83044771 | + | pseudogenic_transcript | processed_pseudogene |
| 375253 | enst00000559652 | sg00000064726 | btbd1-204 | 15 | 83018740 | 83056479 | - | mRNA | nonsense_mediated_decay |
| -381108 | enst00000620003 | sg00000274376 | adamts7p1-203 | 15 | 82298856 | 82304859 | + | lnc_RNA | processed_transcript |
| -381301 | enst00000614978 | sg00000274376 | adamts7p1-202 | 15 | 82298663 | 82305814 | + | lnc_RNA | processed_transcript |
| -381411 | enst00000613213 | sg00000274376 | adamts7p1-201 | 15 | 82298553 | 82334609 | + | pseudogenic_transcript | transcribed_unprocessed_pseudogene |
| 385925 | enst00000379403 | sg00000064726 | btbd1-202 | 15 | 83017961 | 83067151 | - | mRNA | protein_coding |
| 386026 | enst00000261721 | sg00000064726 | btbd1-201 | 15 | 83016423 | 83067252 | - | mRNA | protein_coding |
| 386109 | enst00000584082 | sg00000263643 | mir4515-201 | 15 | 83067335 | 83067415 | + | miRNA | mirna |
| -416820 | enst00000565006 | sg00000188659 | saxo2-203 | 15 | 82263144 | 82264889 | + | lnc_RNA | processed_transcript |
| -417119 | enst00000565501 | sg00000188659 | saxo2-205 | 15 | 82262845 | 82283579 | + | lnc_RNA | processed_transcript |
| -417120 | enst00000565432 | sg00000188659 | saxo2-204 | 15 | 82262844 | 82272094 | + | mRNA | protein_coding |
| -417137 | enst00000562097 | sg00000188659 | saxo2-202 | 15 | 82262827 | 82264881 | + | lnc_RNA | processed_transcript |
| -417138 | enst00000566861 | sg00000188659 | saxo2-207 | 15 | 82262826 | 82264889 | + | mRNA | protein_coding |
| -417146 | enst00000569120 | sg00000188659 | saxo2-208 | 15 | 82262818 | 82265748 | + | mRNA | protein_coding |
| -417153 | enst00000339465 | sg00000188659 | saxo2-201 | 15 | 82262811 | 82284930 | + | mRNA | protein_coding |
| -417154 | enst00000566205 | sg00000188659 | saxo2-206 | 15 | 82262810 | 82264889 | + | mRNA | protein_coding |
| -417230 | enst00000561389 | sg00000140598 | efl1-210 | 15 | 82238454 | 82262734 | - | mRNA | nonsense_mediated_decay |
| -417230 | enst00000268206 | sg00000140598 | efl1-201 | 15 | 82130233 | 82262734 | - | mRNA | protein_coding |
| -417250 | enst00000359445 | sg00000140598 | efl1-202 | 15 | 82130233 | 82262714 | - | mRNA | protein_coding |
| -417303 | enst00000557844 | sg00000140598 | efl1-203 | 15 | 82261688 | 82262661 | - | mRNA | protein_coding |
| -417326 | enst00000650113 | sg00000140598 | efl1-211 | 15 | 82130241 | 82262638 | - | mRNA | nonsense_mediated_decay |
| -417500 | enst00000558974 | sg00000140598 | efl1-205 | 15 | 82261729 | 82262464 | - | mRNA | protein_coding |
| 425631 | enst00000665616 | sg00000286872 | ac024270.5-202 | 15 | 83095437 | 83106857 | - | lnc_RNA | lncrna |
| 425665 | enst00000654100 | sg00000286872 | ac024270.5-201 | 15 | 83095333 | 83106891 | - | lnc_RNA | lncrna |
| 426346 | enst00000379390 | sg00000136404 | tm6sf1-204 | 15 | 83107572 | 83137408 | + | mRNA | protein_coding |
| 426419 | enst00000322019 | sg00000136404 | tm6sf1-202 | 15 | 83107645 | 83137408 | + | mRNA | protein_coding |
| 426422 | enst00000379384 | sg00000136404 | tm6sf1-203 | 15 | 83107648 | 83137281 | + | mRNA | nonsense_mediated_decay |
| 426432 | enst00000258909 | sg00000136404 | tm6sf1-201 | 15 | 83107658 | 83137408 | + | mRNA | nonsense_mediated_decay |
| 426455 | enst00000565774 | sg00000136404 | tm6sf1-207 | 15 | 83107681 | 83136672 | + | mRNA | protein_coding |
| 426457 | enst00000564988 | sg00000136404 | tm6sf1-206 | 15 | 83107683 | 83120086 | + | lnc_RNA | processed_transcript |
| 426485 | enst00000565982 | sg00000136404 | tm6sf1-208 | 15 | 83107711 | 83126818 | + | mRNA | protein_coding |
| -427205 | enst00000557939 | sg00000140598 | efl1-204 | 15 | 82238308 | 82252759 | - | mRNA | protein_coding |
| 427528 | enst00000659954 | sg00000286872 | ac024270.5-203 | 15 | 83095759 | 83108754 | - | lnc_RNA | lncrna |
| 433340 | enst00000565513 | sg00000260579 | ac024270.3-201 | 15 | 83113617 | 83114566 | - | lnc_RNA | lncrna |
| 446178 | enst00000561551 | sg00000136404 | tm6sf1-205 | 15 | 83127404 | 83144854 | + | mRNA | protein_coding |
| -446190 | enst00000561331 | sg00000140598 | efl1-208 | 15 | 82227466 | 82233774 | - | lnc_RNA | processed_transcript |
| -464301 | enst00000560095 | sg00000140598 | efl1-207 | 15 | 82214783 | 82215663 | - | lnc_RNA | processed_transcript |
| 476763 | enst00000568294 | sg00000166503 | hdgfl3-206 | 15 | 83112738 | 83157989 | - | mRNA | protein_coding |
| 488005 | enst00000562702 | sg00000166503 | hdgfl3-202 | 15 | 83157351 | 83169231 | - | lnc_RNA | processed_transcript |
| 497956 | enst00000568634 | sg00000259986 | ac103876.1-201 | 15 | 83179182 | 83186068 | + | lnc_RNA | lncrna |
| -499221 | enst00000648383 | sg00000285974 | ac026624.1-201 | 15 | 82180743 | 82182700 | + | lnc_RNA | lncrna |
| 499576 | enst00000561498 | sg00000259986 | ac103876.1-202 | 15 | 83180802 | 83184796 | + | lnc_RNA | lncrna |
Source file: /hps/research1/birney/users/adrien/analyses/cancer_DNA_promethion/run_1_2_3_4/DNA_pipeline_2/results/methylation/pycometh_meth_comp_CGI_3/out.tsv.gz
MD5 hash: 9aa0e3f69cb4e12345c3758eb68a5efc