CpG interval report generated on 20/05/20 with pycoMeth 0.4.6

Interval details
pvalue rank chromosome start end length number of samples number of CpGs pvalue adjusted pvalue
#84 16 67652623 67654020 1397 3 41 1.09589e-18 1.29745e-16
Methylation log-likelihood ratio by CpG position
Distribution of CpG methylation log-likelihood ratio by sample
Closest transcripts TSS
distance to tss transcript id gene id transcript name chromosome start end strand feature type transcript biotype
0 enst00000602924 sg00000159753 carmil2-211 16 67652965 67654461 + lnc_RNA retained_intron
498 enst00000602368 sg00000159753 carmil2-204 16 67654518 67657569 + mRNA nonsense_mediated_decay
-737 enst00000602931 sg00000159753 carmil2-212 16 67651886 67653213 + lnc_RNA retained_intron
-2698 enst00000602633 sg00000159753 carmil2-208 16 67649925 67652008 + lnc_RNA retained_intron
2820 enst00000602705 sg00000159753 carmil2-209 16 67656840 67657566 + lnc_RNA retained_intron
-4116 enst00000602562 sg00000159753 carmil2-206 16 67648507 67650120 + lnc_RNA retained_intron
4303 enst00000602656 sg00000102977 acd-207 16 67657533 67658323 - lnc_RNA retained_intron
-4754 enst00000602321 sg00000159753 carmil2-203 16 67647869 67653205 + lnc_RNA retained_intron
-5176 enst00000602742 sg00000159753 carmil2-210 16 67647447 67648477 + lnc_RNA retained_intron
5243 enst00000602382 sg00000102977 acd-203 16 67657529 67659263 - mRNA protein_coding
5929 enst00000602850 sg00000102977 acd-210 16 67658140 67659949 - mRNA nonsense_mediated_decay
6194 enst00000602945 sg00000102977 acd-212 16 67658743 67660214 - lnc_RNA retained_intron
6212 enst00000602519 sg00000102977 acd-205 16 67659053 67660232 - lnc_RNA retained_intron
6219 enst00000602320 sg00000102977 acd-202 16 67657546 67660239 - mRNA protein_coding
6240 enst00000620761 sg00000102977 acd-214 16 67657512 67660260 - mRNA protein_coding
6244 enst00000602423 sg00000102977 acd-204 16 67659465 67660264 - lnc_RNA retained_intron
6251 enst00000602821 sg00000102977 acd-209 16 67659647 67660271 - lnc_RNA retained_intron
6251 enst00000602622 sg00000102977 acd-206 16 67657533 67660271 - lnc_RNA retained_intron
6261 enst00000602860 sg00000102977 acd-211 16 67657563 67660281 - lnc_RNA retained_intron
6283 enst00000602780 sg00000102977 acd-208 16 67659618 67660303 - lnc_RNA retained_intron
6458 enst00000647559 sg00000102977 acd-215 16 67657606 67660478 - mRNA protein_coding
6790 enst00000219251 sg00000102977 acd-201 16 67657512 67660810 - mRNA protein_coding
6795 enst00000620338 sg00000102977 acd-213 16 67657513 67660815 - mRNA protein_coding
6926 enst00000602551 sg00000102981 pard6a-203 16 67660946 67662774 + mRNA protein_coding
6928 enst00000458121 sg00000102981 pard6a-202 16 67660948 67662778 + mRNA protein_coding
6939 enst00000219255 sg00000102981 pard6a-201 16 67660959 67662774 + mRNA protein_coding
7212 enst00000602727 sg00000102981 pard6a-204 16 67661232 67662730 + lnc_RNA retained_intron
-7376 enst00000545661 sg00000159753 carmil2-202 16 67645247 67657518 + mRNA protein_coding
-7458 enst00000602467 sg00000159753 carmil2-205 16 67645165 67646247 + lnc_RNA retained_intron
-7479 enst00000334583 sg00000159753 carmil2-201 16 67645144 67657569 + mRNA protein_coding
-7635 enst00000602563 sg00000159753 carmil2-207 16 67644988 67647612 + mRNA nonsense_mediated_decay
9821 enst00000602642 sg00000124074 enkd1-205 16 67663276 67663841 - lnc_RNA retained_intron
10492 enst00000602942 sg00000124074 enkd1-207 16 67662946 67664512 - lnc_RNA retained_intron
12109 enst00000602409 sg00000124074 enkd1-202 16 67663787 67666129 - mRNA protein_coding
12254 enst00000602415 sg00000124074 enkd1-203 16 67663218 67666274 - lnc_RNA processed_transcript
12707 enst00000602644 sg00000124074 enkd1-206 16 67662970 67666727 - mRNA protein_coding
12730 enst00000243878 sg00000124074 enkd1-201 16 67662945 67666750 - mRNA protein_coding
12794 enst00000403458 sg00000159761 c16orf86-201 16 67666814 67668755 + mRNA protein_coding
12796 enst00000459925 sg00000159761 c16orf86-203 16 67666816 67668757 + lnc_RNA retained_intron
12813 enst00000602974 sg00000159761 c16orf86-205 16 67666833 67668098 + lnc_RNA processed_transcript
12817 enst00000445068 sg00000159761 c16orf86-202 16 67666837 67668757 + mRNA nonsense_mediated_decay
12870 enst00000602365 sg00000159761 c16orf86-204 16 67666890 67668215 + mRNA protein_coding
13245 enst00000602531 sg00000124074 enkd1-204 16 67664953 67667265 - lnc_RNA retained_intron
13288 enst00000602987 sg00000159761 c16orf86-206 16 67667308 67668196 + mRNA protein_coding
23464 enst00000602522 sg00000141098 gfod2-205 16 67674534 67677484 - lnc_RNA retained_intron
-26114 enst00000642420 sg00000102974 ctcf-204 16 67626509 67639130 + lnc_RNA retained_intron
31592 enst00000602627 sg00000141098 gfod2-206 16 67675900 67685612 - mRNA protein_coding
-31736 enst00000644950 sg00000102974 ctcf-211 16 67620887 67639173 + lnc_RNA retained_intron
-36477 enst00000388909 sg00000237718 ac009095.1-201 16 67614381 67616146 - lnc_RNA lncrna
-37314 enst00000646566 sg00000102974 ctcf-216 16 67615309 67639162 + lnc_RNA retained_intron
-37660 enst00000645409 sg00000102974 ctcf-213 16 67614963 67639039 + lnc_RNA retained_intron
-38295 enst00000642943 sg00000102974 ctcf-207 16 67614328 67627910 + lnc_RNA retained_intron
-41796 enst00000566078 sg00000102974 ctcf-203 16 67610827 67612465 + lnc_RNA retained_intron
-42033 enst00000645699 sg00000102974 ctcf-214 16 67610590 67638966 + mRNA protein_coding
65280 enst00000602279 sg00000141098 gfod2-202 16 67680434 67719300 - mRNA protein_coding
65296 enst00000268797 sg00000141098 gfod2-201 16 67674536 67719316 - mRNA protein_coding
65304 enst00000602496 sg00000141098 gfod2-204 16 67680749 67719324 - mRNA nonsense_mediated_decay
65310 enst00000602855 sg00000141098 gfod2-207 16 67683280 67719330 - mRNA protein_coding
65319 enst00000602377 sg00000141098 gfod2-203 16 67674531 67719339 - mRNA protein_coding
-81845 enst00000643892 sg00000102974 ctcf-208 16 67570778 67639164 + mRNA nonsense_mediated_decay
-81849 enst00000645306 sg00000102974 ctcf-212 16 67570774 67639163 + mRNA protein_coding
-81850 enst00000642819 sg00000102974 ctcf-205 16 67570773 67639162 + mRNA protein_coding
-81882 enst00000644753 sg00000102974 ctcf-209 16 67570741 67639175 + mRNA protein_coding
-84732 enst00000642847 sg00000102974 ctcf-206 16 67567891 67611239 + mRNA protein_coding
85902 enst00000602844 sg00000270165 ac010530.1-201 16 67738588 67739922 - lnc_RNA lncrna
-88665 enst00000605277 sg00000261386 ac027682.4-201 16 67549214 67563958 - lnc_RNA lncrna
-90034 enst00000646771 sg00000102974 ctcf-217 16 67562589 67639138 + mRNA protein_coding
-90050 enst00000401394 sg00000102974 ctcf-202 16 67562573 67639168 + mRNA protein_coding
-90097 enst00000264010 sg00000102974 ctcf-201 16 67562526 67639177 + mRNA protein_coding
-90134 enst00000644852 sg00000102974 ctcf-210 16 67562489 67611321 + mRNA protein_coding
-90156 enst00000646076 sg00000102974 ctcf-215 16 67562467 67639176 + mRNA protein_coding
-90314 enst00000562846 sg00000259804 ac027682.1-201 16 67561411 67562309 - lnc_RNA lncrna
-99688 enst00000623147 sg00000280214 ac027682.7-201 16 67550815 67552935 - unconfirmed_transcript tec
-102890 enst00000565929 sg00000261386 ac027682.4-202 16 67549219 67549733 - lnc_RNA lncrna
-107086 enst00000565679 sg00000039523 ripor1-212 16 67545537 67546005 + lnc_RNA retained_intron
-107251 enst00000565190 sg00000039523 ripor1-211 16 67545372 67546067 + lnc_RNA retained_intron
-108229 enst00000568959 sg00000039523 ripor1-219 16 67544394 67545797 + mRNA protein_coding
-109624 enst00000564616 sg00000039523 ripor1-209 16 67542999 67543826 + lnc_RNA retained_intron
-109660 enst00000563083 sg00000259945 ac027682.2-201 16 67542123 67542963 - lnc_RNA lncrna
-110051 enst00000564717 sg00000260894 ac027682.3-201 16 67542304 67542572 - lnc_RNA lncrna
-111276 enst00000569733 sg00000039523 ripor1-223 16 67541347 67546786 + lnc_RNA retained_intron
-112270 enst00000569179 sg00000039523 ripor1-220 16 67540353 67541713 + mRNA protein_coding
-112498 enst00000566730 sg00000039523 ripor1-215 16 67540125 67541577 + lnc_RNA retained_intron
-112517 enst00000567122 sg00000261396 ac027682.5-201 16 67538557 67540106 - lnc_RNA lncrna
-112758 enst00000569474 sg00000039523 ripor1-222 16 67539865 67541758 + lnc_RNA retained_intron
-113658 enst00000561534 sg00000039523 ripor1-206 16 67538965 67541578 + lnc_RNA retained_intron
-114159 enst00000566815 sg00000039523 ripor1-216 16 67538464 67541578 + mRNA nonsense_mediated_decay
-114545 enst00000566559 sg00000039523 ripor1-214 16 67538078 67542668 + mRNA protein_coding
-115150 enst00000569253 sg00000039523 ripor1-221 16 67537473 67542665 + mRNA protein_coding
-115169 enst00000428437 sg00000039523 ripor1-204 16 67537454 67546788 + mRNA protein_coding
-121075 enst00000565176 sg00000039523 ripor1-210 16 67531548 67540094 + mRNA protein_coding
-122832 enst00000566920 sg00000039523 ripor1-218 16 67529791 67538996 + mRNA protein_coding
-122896 enst00000422602 sg00000039523 ripor1-203 16 67529727 67546637 + mRNA protein_coding
-123276 enst00000566907 sg00000039523 ripor1-217 16 67529347 67538544 + mRNA protein_coding
-123742 enst00000540839 sg00000039523 ripor1-205 16 67528881 67546786 + mRNA protein_coding
-123756 enst00000566522 sg00000039523 ripor1-213 16 67528867 67540704 + lnc_RNA processed_transcript
-123794 enst00000042381 sg00000039523 ripor1-201 16 67528829 67546786 + mRNA protein_coding
-123806 enst00000379312 sg00000039523 ripor1-202 16 67528817 67546786 + mRNA protein_coding
-123948 enst00000621378 sg00000276075 ac027682.6-202 16 67517950 67528675 - lnc_RNA lncrna
-123991 enst00000613438 sg00000276075 ac027682.6-201 16 67517862 67528632 - lnc_RNA lncrna
-124335 enst00000562755 sg00000039523 ripor1-208 16 67528288 67539021 + mRNA protein_coding
-134205 enst00000562116 sg00000039523 ripor1-207 16 67518418 67538471 + mRNA protein_coding
152498 enst00000602887 sg00000141084 ranbp10-208 16 67735645 67806518 - lnc_RNA processed_transcript
152537 enst00000602506 sg00000141084 ranbp10-203 16 67726009 67806557 - mRNA nonsense_mediated_decay
152537 enst00000602525 sg00000141084 ranbp10-204 16 67731029 67806557 - lnc_RNA retained_intron
152540 enst00000317506 sg00000141084 ranbp10-201 16 67723070 67806560 - mRNA protein_coding
152540 enst00000448631 sg00000141084 ranbp10-202 16 67726005 67806560 - mRNA protein_coding
152540 enst00000602677 sg00000141084 ranbp10-206 16 67726031 67806560 - mRNA protein_coding
152540 enst00000602638 sg00000141084 ranbp10-205 16 67731084 67806560 - mRNA nonsense_mediated_decay
152540 enst00000602815 sg00000141084 ranbp10-207 16 67734969 67806560 - mRNA nonsense_mediated_decay
152632 enst00000630626 sg00000141084 ranbp10-209 16 67723102 67806652 - mRNA protein_coding
152745 enst00000415766 sg00000102904 tsnaxip1-202 16 67806765 67828014 + mRNA protein_coding
152858 enst00000466164 sg00000102904 tsnaxip1-204 16 67806878 67828064 + mRNA nonsense_mediated_decay
152888 enst00000568990 sg00000102904 tsnaxip1-215 16 67806908 67828068 + mRNA nonsense_mediated_decay
153054 enst00000487120 sg00000102904 tsnaxip1-205 16 67807074 67828064 + lnc_RNA retained_intron
153071 enst00000565339 sg00000102904 tsnaxip1-212 16 67807091 67828064 + lnc_RNA retained_intron
153080 enst00000563363 sg00000102904 tsnaxip1-210 16 67807100 67824783 + mRNA nonsense_mediated_decay
153085 enst00000561639 sg00000102904 tsnaxip1-206 16 67807105 67828067 + mRNA protein_coding
153087 enst00000567852 sg00000102904 tsnaxip1-214 16 67807107 67825267 + mRNA protein_coding
153088 enst00000565148 sg00000102904 tsnaxip1-211 16 67807108 67825262 + mRNA protein_coding
153104 enst00000388833 sg00000102904 tsnaxip1-201 16 67807124 67828068 + mRNA protein_coding
153107 enst00000562633 sg00000102904 tsnaxip1-209 16 67807127 67814401 + lnc_RNA retained_intron
153108 enst00000561654 sg00000102904 tsnaxip1-207 16 67807128 67824771 + mRNA protein_coding
153128 enst00000569504 sg00000102904 tsnaxip1-216 16 67807148 67828064 + lnc_RNA retained_intron
153148 enst00000431934 sg00000102904 tsnaxip1-203 16 67807168 67827514 + mRNA protein_coding
153275 enst00000562321 sg00000102904 tsnaxip1-208 16 67807295 67825293 + lnc_RNA processed_transcript
-168381 enst00000602476 sg00000270049 ac009061.2-204 16 67484242 67487250 + lnc_RNA lncrna
-168810 enst00000290953 sg00000159723 agrp-201 16 67482571 67483813 - mRNA protein_coding
-171216 enst00000635000 sg00000270049 ac009061.2-203 16 67481407 67505063 + lnc_RNA lncrna
-171239 enst00000602596 sg00000270049 ac009061.2-202 16 67481384 67484669 + lnc_RNA lncrna
-171247 enst00000653151 sg00000270049 ac009061.2-207 16 67481376 67485807 + lnc_RNA lncrna
-171250 enst00000659360 sg00000270049 ac009061.2-206 16 67481373 67505914 + lnc_RNA lncrna
-171309 enst00000656196 sg00000270049 ac009061.2-205 16 67481314 67505977 + lnc_RNA lncrna
-171309 enst00000602592 sg00000270049 ac009061.2-201 16 67481314 67481956 + lnc_RNA lncrna
-171442 enst00000563064 sg00000159720 atp6v0d1-206 16 67438822 67481181 - mRNA nonsense_mediated_decay
-171455 enst00000564788 sg00000159720 atp6v0d1-210 16 67439108 67481168 - mRNA nonsense_mediated_decay
-171466 enst00000290949 sg00000159720 atp6v0d1-201 16 67438019 67481157 - mRNA protein_coding
-171466 enst00000568298 sg00000159720 atp6v0d1-216 16 67454579 67481157 - lnc_RNA retained_intron
-171466 enst00000561658 sg00000159720 atp6v0d1-204 16 67452244 67481157 - lnc_RNA processed_transcript
-171475 enst00000561852 sg00000159720 atp6v0d1-205 16 67438809 67481148 - mRNA nonsense_mediated_decay
-171506 enst00000540149 sg00000159720 atp6v0d1-203 16 67438476 67481117 - mRNA protein_coding
-171513 enst00000602876 sg00000159720 atp6v0d1-218 16 67438019 67481110 - mRNA protein_coding
-171537 enst00000564191 sg00000159720 atp6v0d1-208 16 67439088 67481086 - mRNA nonsense_mediated_decay
-171544 enst00000565835 sg00000159720 atp6v0d1-211 16 67438321 67481079 - mRNA protein_coding
173530 enst00000565558 sg00000102904 tsnaxip1-213 16 67827550 67832148 + mRNA nonsense_mediated_decay
175150 enst00000574569 sg00000102901 cenpt-234 16 67828186 67829170 - lnc_RNA retained_intron
176233 enst00000568495 sg00000102901 cenpt-227 16 67828185 67830253 - lnc_RNA retained_intron
178292 enst00000562947 sg00000102901 cenpt-209 16 67830395 67832312 - lnc_RNA processed_transcript
179840 enst00000564538 sg00000102901 cenpt-214 16 67831586 67833860 - lnc_RNA processed_transcript
179840 enst00000562513 sg00000102901 cenpt-207 16 67828159 67833860 - mRNA nonsense_mediated_decay
179860 enst00000563885 sg00000102901 cenpt-210 16 67828187 67833880 - lnc_RNA retained_intron
179865 enst00000566758 sg00000102901 cenpt-223 16 67829945 67833885 - mRNA protein_coding
179876 enst00000562483 sg00000102901 cenpt-206 16 67831829 67833896 - lnc_RNA retained_intron
179876 enst00000626059 sg00000102901 cenpt-235 16 67828165 67833896 - mRNA protein_coding
179877 enst00000565157 sg00000102901 cenpt-218 16 67828159 67833897 - lnc_RNA retained_intron
179877 enst00000436104 sg00000102901 cenpt-201 16 67828159 67833897 - lnc_RNA retained_intron
179893 enst00000569862 sg00000102901 cenpt-233 16 67828157 67833913 - lnc_RNA retained_intron
179898 enst00000564817 sg00000102901 cenpt-215 16 67828209 67833918 - mRNA protein_coding
179909 enst00000568069 sg00000102901 cenpt-226 16 67831220 67833929 - mRNA nonsense_mediated_decay
179911 enst00000562338 sg00000102901 cenpt-204 16 67831794 67833931 - mRNA nonsense_mediated_decay
179918 enst00000562462 sg00000102901 cenpt-205 16 67830905 67833938 - mRNA nonsense_mediated_decay
179923 enst00000565713 sg00000102901 cenpt-221 16 67831216 67833943 - mRNA nonsense_mediated_decay
179923 enst00000566067 sg00000102901 cenpt-222 16 67831769 67833943 - mRNA nonsense_mediated_decay
179926 enst00000564128 sg00000102901 cenpt-211 16 67829949 67833946 - lnc_RNA retained_intron
180192 enst00000568564 sg00000102901 cenpt-228 16 67832392 67834212 - lnc_RNA retained_intron
181318 enst00000440851 sg00000102901 cenpt-202 16 67828161 67835338 - mRNA protein_coding
187930 enst00000565436 sg00000102901 cenpt-220 16 67835248 67841950 - lnc_RNA processed_transcript
188300 enst00000303596 sg00000168286 thap11-201 16 67842320 67844195 + mRNA protein_coding
189088 enst00000564346 sg00000102901 cenpt-213 16 67833890 67843108 - lnc_RNA processed_transcript
189109 enst00000565385 sg00000102901 cenpt-219 16 67833945 67843129 - lnc_RNA processed_transcript
189122 enst00000567985 sg00000102901 cenpt-225 16 67833840 67843142 - mRNA protein_coding
189270 enst00000567482 sg00000102901 cenpt-224 16 67834025 67843290 - lnc_RNA processed_transcript
189285 enst00000564144 sg00000102901 cenpt-212 16 67833974 67843305 - lnc_RNA processed_transcript
189317 enst00000569019 sg00000102901 cenpt-231 16 67834034 67843337 - lnc_RNA processed_transcript
192803 enst00000565132 sg00000102901 cenpt-217 16 67833966 67846823 - lnc_RNA processed_transcript
192903 enst00000568390 sg00000102898 nutf2-204 16 67846923 67868741 + lnc_RNA retained_intron
192913 enst00000219169 sg00000102898 nutf2-201 16 67846933 67872567 + mRNA protein_coding
192915 enst00000568233 sg00000102898 nutf2-203 16 67846935 67868838 + lnc_RNA retained_intron
192915 enst00000567105 sg00000102898 nutf2-202 16 67846935 67870852 + mRNA protein_coding
193141 enst00000569436 sg00000102898 nutf2-206 16 67847161 67871323 + mRNA protein_coding
193191 enst00000568396 sg00000102898 nutf2-205 16 67847211 67871323 + mRNA protein_coding
193322 enst00000570026 sg00000102898 nutf2-207 16 67847342 67868496 + lnc_RNA retained_intron
-193398 enst00000426604 sg00000159720 atp6v0d1-202 16 67438413 67459225 - mRNA nonsense_mediated_decay
-193404 enst00000568101 sg00000159720 atp6v0d1-215 16 67443100 67459219 - mRNA nonsense_mediated_decay
-193443 enst00000566322 sg00000159720 atp6v0d1-212 16 67439053 67459180 - mRNA nonsense_mediated_decay
193673 enst00000561593 sg00000102901 cenpt-203 16 67832462 67847693 - mRNA protein_coding
193673 enst00000562787 sg00000102901 cenpt-208 16 67828157 67847693 - mRNA protein_coding
193676 enst00000565114 sg00000102901 cenpt-216 16 67832510 67847696 - mRNA protein_coding
193732 enst00000568652 sg00000102901 cenpt-229 16 67833956 67847752 - lnc_RNA processed_transcript
193735 enst00000569094 sg00000102901 cenpt-232 16 67833889 67847755 - lnc_RNA processed_transcript
193791 enst00000568765 sg00000102901 cenpt-230 16 67834034 67847811 - lnc_RNA processed_transcript
-198908 enst00000564615 sg00000159720 atp6v0d1-209 16 67438825 67453715 - mRNA protein_coding
202091 enst00000573092 sg00000262141 ac040162.2-201 16 67855955 67856111 - pseudogenic_transcript processed_pseudogene
-209216 enst00000567170 sg00000159720 atp6v0d1-213 16 67438845 67443407 - lnc_RNA retained_intron
-210891 enst00000568620 sg00000159720 atp6v0d1-217 16 67438014 67441732 - lnc_RNA retained_intron
-211231 enst00000567694 sg00000159720 atp6v0d1-214 16 67438541 67441392 - lnc_RNA processed_transcript
-212805 enst00000563305 sg00000159720 atp6v0d1-207 16 67438037 67439818 - lnc_RNA retained_intron
215940 enst00000587481 sg00000102898 nutf2-208 16 67869960 67872567 + lnc_RNA retained_intron
219032 enst00000572221 sg00000038358 edc4-204 16 67873052 67884495 + lnc_RNA retained_intron
219032 enst00000358933 sg00000038358 edc4-201 16 67873052 67884499 + mRNA protein_coding
219352 enst00000536072 sg00000038358 edc4-202 16 67873372 67880489 + lnc_RNA retained_intron
-221159 enst00000567261 sg00000261320 ac009061.1-201 16 67430667 67431464 - lnc_RNA lncrna
-221257 enst00000566606 sg00000176387 hsd11b2-202 16 67431366 67436134 + mRNA nonsense_mediated_decay
-221501 enst00000569303 sg00000176387 hsd11b2-204 16 67431122 67433184 + lnc_RNA retained_intron
-221502 enst00000326152 sg00000176387 hsd11b2-201 16 67431121 67437553 + mRNA protein_coding
-221971 enst00000567684 sg00000176387 hsd11b2-203 16 67430652 67436261 + lnc_RNA processed_transcript
222465 enst00000574770 sg00000038358 edc4-208 16 67876485 67879779 + lnc_RNA processed_transcript
223469 enst00000573992 sg00000038358 edc4-207 16 67877489 67884497 + lnc_RNA retained_intron
224852 enst00000572031 sg00000038358 edc4-203 16 67878872 67879739 + lnc_RNA retained_intron
226329 enst00000577028 sg00000038358 edc4-213 16 67880349 67881180 + lnc_RNA retained_intron
226727 enst00000576972 sg00000038358 edc4-212 16 67880747 67881796 + lnc_RNA retained_intron
226729 enst00000572724 sg00000038358 edc4-205 16 67880749 67881349 + lnc_RNA retained_intron
226896 enst00000575514 sg00000038358 edc4-211 16 67880916 67882516 + lnc_RNA retained_intron
228047 enst00000575507 sg00000038358 edc4-210 16 67882067 67882923 + lnc_RNA retained_intron
228429 enst00000577105 sg00000038358 edc4-214 16 67882449 67884322 + mRNA protein_coding
228441 enst00000572067 sg00000263126 ac040162.3-201 16 67882461 67886367 + lnc_RNA lncrna
228467 enst00000573985 sg00000038358 edc4-206 16 67882487 67884165 + mRNA protein_coding
228760 enst00000575033 sg00000038358 edc4-209 16 67882780 67884123 + mRNA protein_coding
230865 enst00000339176 sg00000188038 nrn1l-201 16 67884885 67886368 + mRNA protein_coding
230888 enst00000576758 sg00000188038 nrn1l-203 16 67884908 67888855 + mRNA protein_coding
231549 enst00000576147 sg00000188038 nrn1l-202 16 67885569 67886368 + mRNA protein_coding
-235790 enst00000568650 sg00000159714 zdhhc1-206 16 67404158 67416833 - lnc_RNA retained_intron
-236137 enst00000565726 sg00000159714 zdhhc1-203 16 67394152 67416486 - mRNA protein_coding
-236149 enst00000348579 sg00000159714 zdhhc1-201 16 67394419 67416474 - mRNA protein_coding
239234 enst00000291041 sg00000159792 pskh1-201 16 67893254 67929676 + mRNA protein_coding
239252 enst00000570631 sg00000159792 pskh1-202 16 67893272 67910088 + mRNA protein_coding
239281 enst00000575198 sg00000159792 pskh1-203 16 67893301 67903145 + lnc_RNA processed_transcript
-248070 enst00000562122 sg00000159714 zdhhc1-202 16 67395505 67404553 - lnc_RNA processed_transcript
-256336 enst00000567311 sg00000159714 zdhhc1-205 16 67395566 67396287 - lnc_RNA processed_transcript
-256366 enst00000566075 sg00000159714 zdhhc1-204 16 67394425 67396257 - lnc_RNA processed_transcript
-259105 enst00000290942 sg00000159713 tppp3-201 16 67389825 67393518 - mRNA protein_coding
-259125 enst00000393957 sg00000159713 tppp3-202 16 67389809 67393498 - mRNA protein_coding
-259132 enst00000562206 sg00000159713 tppp3-204 16 67389846 67393491 - mRNA protein_coding
-259142 enst00000561537 sg00000159713 tppp3-203 16 67390479 67393481 - lnc_RNA retained_intron
-260670 enst00000564104 sg00000159713 tppp3-205 16 67389811 67391953 - mRNA protein_coding
-261773 enst00000458950 sg00000239194 rnu1-123p-201 16 67390691 67390850 - snRNA snrna
275654 enst00000573845 sg00000141086 ctrl-204 16 67927640 67929674 - lnc_RNA processed_transcript
277465 enst00000576915 sg00000141086 ctrl-208 16 67929898 67931485 - lnc_RNA retained_intron
277654 enst00000575302 sg00000141086 ctrl-206 16 67930975 67931674 - lnc_RNA retained_intron
277842 enst00000574481 sg00000141086 ctrl-205 16 67929574 67931862 - mRNA protein_coding
277842 enst00000571044 sg00000141086 ctrl-201 16 67929952 67931862 - mRNA protein_coding
277842 enst00000571605 sg00000141086 ctrl-202 16 67930036 67931862 - mRNA protein_coding
278093 enst00000576408 sg00000141086 ctrl-207 16 67930737 67932113 - lnc_RNA processed_transcript
278345 enst00000572144 sg00000141086 ctrl-203 16 67929579 67932365 - lnc_RNA retained_intron
281621 enst00000573493 sg00000261884 ac040162.1-202 16 67930925 67935641 - mRNA nonsense_mediated_decay
281775 enst00000570985 sg00000205220 psmb10-203 16 67934506 67935795 - lnc_RNA retained_intron
281965 enst00000574576 sg00000205220 psmb10-204 16 67934506 67935985 - mRNA protein_coding
281997 enst00000575231 sg00000261884 ac040162.1-201 16 67929614 67936017 - lnc_RNA retained_intron
282827 enst00000570304 sg00000205220 psmb10-202 16 67935328 67936847 - lnc_RNA retained_intron
282830 enst00000358514 sg00000205220 psmb10-201 16 67934506 67936850 - mRNA protein_coding
282844 enst00000575556 sg00000205220 psmb10-205 16 67935549 67936864 - lnc_RNA retained_intron
-287480 enst00000569121 sg00000159708 lrrc36-214 16 67365143 67367398 + lnc_RNA retained_intron
288438 enst00000570396 sg00000213398 lcat-203 16 67941817 67942458 - mRNA protein_coding
288557 enst00000576450 sg00000213398 lcat-209 16 67941809 67942577 - mRNA protein_coding
288881 enst00000573846 sg00000213398 lcat-206 16 67942157 67942901 - lnc_RNA retained_intron
288910 enst00000573538 sg00000213398 lcat-205 16 67939882 67942930 - mRNA nonsense_mediated_decay
289074 enst00000570369 sg00000213398 lcat-202 16 67939882 67943094 - mRNA protein_coding
289124 enst00000575277 sg00000213398 lcat-207 16 67942399 67943144 - lnc_RNA retained_intron
289605 enst00000570980 sg00000213398 lcat-204 16 67940246 67943625 - mRNA protein_coding
290100 enst00000264005 sg00000213398 lcat-201 16 67939750 67944120 - mRNA protein_coding
290111 enst00000575467 sg00000213398 lcat-208 16 67941368 67944131 - mRNA nonsense_mediated_decay
291385 enst00000570616 sg00000124067 slc12a4-205 16 67944738 67945405 - mRNA nonsense_mediated_decay
293085 enst00000575857 sg00000124067 slc12a4-215 16 67945545 67947105 - mRNA nonsense_mediated_decay
296092 enst00000576513 sg00000124067 slc12a4-218 16 67948061 67950112 - lnc_RNA retained_intron
296401 enst00000572476 sg00000124067 slc12a4-210 16 67949571 67950421 - lnc_RNA retained_intron
297447 enst00000572766 sg00000124067 slc12a4-211 16 67949907 67951467 - lnc_RNA retained_intron
297514 enst00000574665 sg00000124067 slc12a4-214 16 67949799 67951534 - lnc_RNA retained_intron
297909 enst00000573702 sg00000124067 slc12a4-213 16 67950369 67951929 - lnc_RNA retained_intron
-305220 enst00000435835 sg00000159708 lrrc36-202 16 67347403 67385200 + mRNA protein_coding
-305234 enst00000561821 sg00000159708 lrrc36-203 16 67347389 67367185 + mRNA nonsense_mediated_decay
-305235 enst00000567823 sg00000159708 lrrc36-211 16 67347388 67385173 + mRNA nonsense_mediated_decay
-305247 enst00000569552 sg00000159708 lrrc36-217 16 67347376 67367359 + mRNA nonsense_mediated_decay
-305247 enst00000567723 sg00000159708 lrrc36-210 16 67347376 67385200 + mRNA nonsense_mediated_decay
-305247 enst00000563189 sg00000159708 lrrc36-205 16 67347376 67385200 + mRNA protein_coding
-305255 enst00000568010 sg00000159708 lrrc36-212 16 67347368 67385125 + mRNA nonsense_mediated_decay
-305273 enst00000567211 sg00000159708 lrrc36-209 16 67347350 67372102 + mRNA nonsense_mediated_decay
310045 enst00000537830 sg00000124067 slc12a4-203 16 67944593 67964065 - mRNA protein_coding
312858 enst00000541864 sg00000124067 slc12a4-204 16 67944482 67966878 - mRNA protein_coding
314449 enst00000576462 sg00000124067 slc12a4-217 16 67957529 67968469 - lnc_RNA retained_intron
314533 enst00000570802 sg00000124067 slc12a4-206 16 67944485 67968553 - lnc_RNA retained_intron
314533 enst00000576616 sg00000124067 slc12a4-219 16 67944485 67968553 - mRNA protein_coding
314564 enst00000572037 sg00000124067 slc12a4-209 16 67944414 67968584 - mRNA protein_coding
314596 enst00000576377 sg00000124067 slc12a4-216 16 67950993 67968616 - mRNA nonsense_mediated_decay
314617 enst00000316341 sg00000124067 slc12a4-201 16 67943474 67968637 - mRNA protein_coding
314634 enst00000573023 sg00000124067 slc12a4-212 16 67947101 67968654 - lnc_RNA retained_intron
314674 enst00000422611 sg00000124067 slc12a4-202 16 67943474 67968694 - mRNA protein_coding
315172 enst00000572010 sg00000124067 slc12a4-208 16 67952242 67969192 - lnc_RNA processed_transcript
315581 enst00000571299 sg00000124067 slc12a4-207 16 67952216 67969601 - mRNA protein_coding
-325643 enst00000566558 sg00000159708 lrrc36-208 16 67326980 67347591 + lnc_RNA processed_transcript
-325648 enst00000568804 sg00000159708 lrrc36-213 16 67326975 67363605 + mRNA protein_coding
-325740 enst00000565019 sg00000159708 lrrc36-207 16 67326883 67385203 + mRNA nonsense_mediated_decay
-325740 enst00000569228 sg00000159708 lrrc36-215 16 67326883 67372102 + lnc_RNA retained_intron
-325777 enst00000561948 sg00000159708 lrrc36-204 16 67326846 67363712 + mRNA protein_coding
-325779 enst00000570075 sg00000159708 lrrc36-218 16 67326844 67363710 + mRNA nonsense_mediated_decay
-325779 enst00000569499 sg00000159708 lrrc36-216 16 67326844 67365355 + mRNA protein_coding
-325808 enst00000329956 sg00000159708 lrrc36-201 16 67326815 67385204 + mRNA protein_coding
-325825 enst00000563303 sg00000159708 lrrc36-206 16 67326798 67350290 + lnc_RNA processed_transcript
-325863 enst00000568736 sg00000168676 kctd19-209 16 67303116 67326760 - lnc_RNA retained_intron
-325870 enst00000566392 sg00000168676 kctd19-207 16 67289433 67326753 - lnc_RNA retained_intron
-325882 enst00000304372 sg00000168676 kctd19-201 16 67289432 67326741 - mRNA protein_coding
-325884 enst00000561625 sg00000168676 kctd19-202 16 67305374 67326739 - lnc_RNA processed_transcript
-325894 enst00000569333 sg00000168676 kctd19-210 16 67289435 67326729 - lnc_RNA retained_intron
-325897 enst00000570049 sg00000168676 kctd19-211 16 67289428 67326726 - lnc_RNA retained_intron
-325909 enst00000562721 sg00000168676 kctd19-203 16 67303177 67326714 - mRNA nonsense_mediated_decay
326479 enst00000268793 sg00000141096 dpep3-201 16 67975663 67980499 - mRNA protein_coding
326488 enst00000574342 sg00000141096 dpep3-202 16 67978573 67980508 - lnc_RNA processed_transcript
-326526 enst00000566295 sg00000168676 kctd19-206 16 67320646 67326097 - mRNA protein_coding
326529 enst00000672962 sg00000141096 dpep3-203 16 67975664 67980549 - mRNA protein_coding
-330636 enst00000364331 sg00000201201 rn7skp118-201 16 67321658 67321987 - ncRNA misc_rna
-330713 enst00000567976 sg00000168676 kctd19-208 16 67304453 67321910 - mRNA protein_coding
-331833 enst00000562860 sg00000168676 kctd19-205 16 67299406 67320790 - lnc_RNA processed_transcript
333726 enst00000571081 sg00000167264 dus2-214 16 67987746 68053655 + mRNA protein_coding
333752 enst00000570709 sg00000167264 dus2-213 16 67987772 68056424 + mRNA protein_coding
339843 enst00000572888 sg00000167261 dpep2-204 16 67987506 67993863 - mRNA protein_coding
340308 enst00000574865 sg00000167261 dpep2-207 16 67992557 67994328 - mRNA protein_coding
340766 enst00000575677 sg00000167264 dus2-215 16 67994786 68066373 + mRNA protein_coding
345464 enst00000393847 sg00000167261 dpep2-202 16 67987394 67999484 - mRNA protein_coding
345492 enst00000573808 sg00000167261 dpep2-205 16 67990898 67999512 - mRNA protein_coding
345498 enst00000572624 sg00000167261 dpep2-203 16 67992173 67999518 - mRNA protein_coding
346544 enst00000575510 sg00000167261 dpep2-209 16 67990049 68000564 - mRNA protein_coding
346548 enst00000574316 sg00000167261 dpep2-206 16 67992817 68000568 - lnc_RNA retained_intron
346561 enst00000268795 sg00000167261 dpep2-201 16 67991643 68000581 - lnc_RNA retained_intron
346566 enst00000575203 sg00000167261 dpep2-208 16 67987397 68000586 - mRNA nonsense_mediated_decay
350932 enst00000571212 sg00000262962 kars1p3-201 16 68002432 68004952 - pseudogenic_transcript unprocessed_pseudogene
-358800 enst00000562841 sg00000168676 kctd19-204 16 67289433 67293823 - mRNA protein_coding
361891 enst00000574912 sg00000263201 dpep2nb-201 16 68013436 68015911 - mRNA protein_coding
361899 enst00000576994 sg00000167264 dus2-216 16 68015919 68053612 + mRNA protein_coding
362131 enst00000566306 sg00000167264 dus2-209 16 68016151 68056401 + mRNA protein_coding
363797 enst00000365466 sg00000202336 rnu6-359p-201 16 68017710 68017817 - snRNA snrna
-364673 enst00000567136 sg00000196155 ac040160.1-215 16 67287950 67289072 + mRNA nonsense_mediated_decay
-364723 enst00000569875 sg00000196155 ac040160.1-214 16 67287900 67288942 + mRNA protein_coding
-365051 enst00000562289 sg00000196155 ac040160.1-213 16 67287572 67289307 + lnc_RNA retained_intron
369233 enst00000358896 sg00000167264 dus2-201 16 68023253 68079320 + mRNA protein_coding
369241 enst00000564975 sg00000167264 dus2-206 16 68023261 68054035 + lnc_RNA retained_intron
369245 enst00000568099 sg00000167264 dus2-211 16 68023265 68056376 + mRNA protein_coding
369264 enst00000565263 sg00000167264 dus2-207 16 68023284 68079320 + mRNA protein_coding
369264 enst00000567100 sg00000167264 dus2-210 16 68023284 68053635 + mRNA protein_coding
369272 enst00000432752 sg00000167264 dus2-202 16 68023292 68079315 + mRNA protein_coding
369303 enst00000569289 sg00000167264 dus2-212 16 68023323 68038146 + mRNA protein_coding
369309 enst00000564781 sg00000167264 dus2-205 16 68023329 68049533 + mRNA protein_coding
369422 enst00000332395 sg00000182810 ddx28-201 16 68021274 68023442 - mRNA protein_coding
-372727 enst00000393966 sg00000196155 ac040160.1-212 16 67279896 67289055 + mRNA nonsense_mediated_decay
-373027 enst00000567938 sg00000196155 ac040160.1-211 16 67279596 67280275 + mRNA protein_coding
-373034 enst00000450733 sg00000196155 ac040160.1-210 16 67279589 67289499 + mRNA protein_coding
-373070 enst00000568621 sg00000196155 ac040160.1-209 16 67279553 67280152 + mRNA protein_coding
-373091 enst00000379344 sg00000196155 ac040160.1-208 16 67279532 67289480 + mRNA protein_coding
-373385 enst00000427155 sg00000196155 ac040160.1-207 16 67279238 67289479 + mRNA protein_coding
-373476 enst00000562744 sg00000196155 ac040160.1-206 16 67279147 67280934 + mRNA protein_coding
-373789 enst00000565773 sg00000196155 ac040160.1-205 16 67278834 67280368 + mRNA protein_coding
-374466 enst00000565899 sg00000196155 ac040160.1-204 16 67278157 67280265 + mRNA protein_coding
-374803 enst00000562144 sg00000196155 ac040160.1-203 16 67277820 67280273 + mRNA protein_coding
-375113 enst00000360461 sg00000196155 ac040160.1-202 16 67277510 67289479 + mRNA protein_coding
-375113 enst00000563969 sg00000196155 ac040160.1-201 16 67277510 67289479 + mRNA nonsense_mediated_decay
383893 enst00000562246 sg00000167264 dus2-204 16 68037913 68070204 + mRNA protein_coding
383984 enst00000561965 sg00000167264 dus2-203 16 68038004 68079242 + mRNA nonsense_mediated_decay
-391515 enst00000573063 sg00000262691 ac040160.2-201 16 67261108 67263784 + lnc_RNA retained_intron
-399814 enst00000566626 sg00000135740 slc9a5-207 16 67252809 67270980 + mRNA protein_coding
-399887 enst00000567247 sg00000135740 slc9a5-209 16 67252736 67265106 + mRNA protein_coding
-403545 enst00000566638 sg00000135740 slc9a5-208 16 67249078 67265148 + lnc_RNA retained_intron
-403644 enst00000299798 sg00000135740 slc9a5-201 16 67248979 67272191 + mRNA protein_coding
-403644 enst00000561472 sg00000135740 slc9a5-202 16 67248979 67256478 + lnc_RNA processed_transcript
-403646 enst00000563723 sg00000135740 slc9a5-203 16 67248977 67272190 + lnc_RNA retained_intron
-403751 enst00000564812 sg00000135740 slc9a5-205 16 67248872 67272058 + mRNA nonsense_mediated_decay
-405142 enst00000258201 sg00000135723 fhod1-201 16 67229389 67247481 - mRNA protein_coding
-405145 enst00000561922 sg00000135723 fhod1-202 16 67233681 67247478 - mRNA nonsense_mediated_decay
-405159 enst00000567752 sg00000135723 fhod1-207 16 67229391 67247464 - lnc_RNA retained_intron
-405708 enst00000566345 sg00000135740 slc9a5-206 16 67246915 67259942 + mRNA protein_coding
-414940 enst00000564704 sg00000135740 slc9a5-204 16 67237683 67272190 + lnc_RNA retained_intron
-416007 enst00000568595 sg00000135723 fhod1-208 16 67233948 67236616 - mRNA nonsense_mediated_decay
-417869 enst00000562266 sg00000135723 fhod1-203 16 67234180 67234754 - lnc_RNA retained_intron
-418592 enst00000569888 sg00000135723 fhod1-210 16 67231790 67234031 - lnc_RNA retained_intron
-418862 enst00000567509 sg00000135723 fhod1-205 16 67231450 67233761 - mRNA nonsense_mediated_decay
-420565 enst00000567561 sg00000135723 fhod1-206 16 67230329 67232058 - mRNA nonsense_mediated_decay
-421543 enst00000566006 sg00000135723 fhod1-204 16 67230314 67231080 - lnc_RNA retained_intron
-422427 enst00000569085 sg00000135723 fhod1-209 16 67229387 67230196 - lnc_RNA retained_intron
423320 enst00000548144 sg00000261864 ac130462.3-201 16 68077340 68122271 + lnc_RNA lncrna
423932 enst00000565980 sg00000167264 dus2-208 16 68077952 68078866 + lnc_RNA retained_intron
-423952 enst00000564649 sg00000168701 tmem208-209 16 67228671 67229278 + lnc_RNA retained_intron
-424097 enst00000563271 sg00000168701 tmem208-205 16 67228526 67229278 + lnc_RNA retained_intron
-424105 enst00000563426 sg00000168701 tmem208-206 16 67228518 67229278 + lnc_RNA processed_transcript
-425410 enst00000564087 sg00000168701 tmem208-208 16 67227213 67228622 + mRNA nonsense_mediated_decay
-425455 enst00000565201 sg00000168701 tmem208-210 16 67227168 67229278 + mRNA protein_coding
-425466 enst00000562235 sg00000168701 tmem208-203 16 67227157 67229278 + mRNA nonsense_mediated_decay
-425478 enst00000561586 sg00000168701 tmem208-202 16 67227145 67228956 + lnc_RNA retained_intron
-425493 enst00000304800 sg00000168701 tmem208-201 16 67227130 67229278 + mRNA protein_coding
-425503 enst00000563953 sg00000168701 tmem208-207 16 67227120 67229262 + mRNA protein_coding
-425505 enst00000566486 sg00000168701 tmem208-211 16 67227118 67228302 + lnc_RNA retained_intron
-425510 enst00000563168 sg00000168701 tmem208-204 16 67227113 67229248 + lnc_RNA retained_intron
-425520 enst00000567193 sg00000168701 tmem208-212 16 67227103 67229225 + lnc_RNA retained_intron
-425575 enst00000485549 sg00000125122 lrrc29-208 16 67210740 67227048 - lnc_RNA processed_transcript
-425596 enst00000462169 sg00000125122 lrrc29-207 16 67210348 67227027 - lnc_RNA processed_transcript
-425607 enst00000409037 sg00000125122 lrrc29-202 16 67207599 67227016 - lnc_RNA processed_transcript
-425610 enst00000433915 sg00000125122 lrrc29-205 16 67207648 67227013 - lnc_RNA processed_transcript
-425612 enst00000637894 sg00000125122 lrrc29-212 16 67210048 67227011 - lnc_RNA processed_transcript
-425613 enst00000409509 sg00000125122 lrrc29-203 16 67207139 67227010 - lnc_RNA processed_transcript
-425625 enst00000637079 sg00000125122 lrrc29-210 16 67207605 67226998 - pseudogenic_transcript transcribed_unitary_pseudogene
-425625 enst00000629962 sg00000125122 lrrc29-209 16 67207140 67226998 - mRNA protein_coding
-425746 enst00000424285 sg00000125122 lrrc29-204 16 67207880 67226877 - lnc_RNA processed_transcript
-425805 enst00000637247 sg00000125122 lrrc29-211 16 67207140 67226818 - lnc_RNA processed_transcript
-425805 enst00000393992 sg00000125122 lrrc29-201 16 67207140 67226818 - mRNA protein_coding
-425835 enst00000447579 sg00000125122 lrrc29-206 16 67208390 67226788 - lnc_RNA processed_transcript
430731 enst00000553077 sg00000072736 nfatc3-208 16 68084751 68192212 + lnc_RNA retained_intron
430731 enst00000569766 sg00000072736 nfatc3-220 16 68084751 68226471 + lnc_RNA processed_transcript
430731 enst00000563319 sg00000072736 nfatc3-213 16 68084751 68226934 + lnc_RNA processed_transcript
430758 enst00000566301 sg00000072736 nfatc3-216 16 68084778 68226934 + lnc_RNA processed_transcript
430758 enst00000549350 sg00000072736 nfatc3-207 16 68084778 68192212 + lnc_RNA retained_intron
430819 enst00000566893 sg00000072736 nfatc3-217 16 68084839 68167015 + lnc_RNA processed_transcript
431324 enst00000575270 sg00000072736 nfatc3-222 16 68085344 68218090 + mRNA protein_coding
431346 enst00000561714 sg00000072736 nfatc3-209 16 68085366 68167015 + mRNA nonsense_mediated_decay
431350 enst00000346183 sg00000072736 nfatc3-202 16 68085370 68229259 + mRNA protein_coding
431369 enst00000568466 sg00000072736 nfatc3-219 16 68085389 68174514 + mRNA nonsense_mediated_decay
431421 enst00000539828 sg00000072736 nfatc3-206 16 68085441 68192210 + mRNA nonsense_mediated_decay
431426 enst00000562171 sg00000072736 nfatc3-210 16 68085446 68158073 + mRNA nonsense_mediated_decay
431438 enst00000349223 sg00000072736 nfatc3-203 16 68085458 68229258 + mRNA protein_coding
431638 enst00000379165 sg00000072736 nfatc3-204 16 68085658 68192228 + lnc_RNA retained_intron
431638 enst00000329524 sg00000072736 nfatc3-201 16 68085658 68229259 + mRNA protein_coding
431841 enst00000570212 sg00000072736 nfatc3-221 16 68085861 68226471 + mRNA protein_coding
431841 enst00000562926 sg00000072736 nfatc3-211 16 68085861 68226934 + mRNA protein_coding
432618 enst00000563796 sg00000072736 nfatc3-214 16 68086638 68226934 + lnc_RNA processed_transcript
432618 enst00000567152 sg00000072736 nfatc3-218 16 68086638 68226471 + lnc_RNA processed_transcript
432681 enst00000563288 sg00000072736 nfatc3-212 16 68086701 68226934 + lnc_RNA processed_transcript
434681 enst00000535127 sg00000072736 nfatc3-205 16 68088701 68226934 + lnc_RNA processed_transcript
435523 enst00000364980 sg00000201850 ac130462.1-201 16 68089449 68089543 - ncRNA misc_rna
-445774 enst00000623816 sg00000280163 ac040160.3-201 16 67205175 67206849 - unconfirmed_transcript tec
-450228 enst00000385213 sg00000207948 mir328-201 16 67202321 67202395 - miRNA mirna
-452672 enst00000571638 sg00000102890 elmo3-205 16 67199951 67201599 + lnc_RNA processed_transcript
-453114 enst00000477898 sg00000102890 elmo3-203 16 67199509 67204029 + mRNA protein_coding
-453457 enst00000571587 sg00000102890 elmo3-204 16 67199166 67201548 + mRNA nonsense_mediated_decay
-453492 enst00000393997 sg00000102890 elmo3-202 16 67199131 67204004 + mRNA protein_coding
-453498 enst00000652269 sg00000102890 elmo3-206 16 67199125 67204023 + mRNA protein_coding
-453512 enst00000360833 sg00000102890 elmo3-201 16 67199111 67204029 + mRNA protein_coding
-456972 enst00000567228 sg00000205250 e2f4-209 16 67195651 67198219 + lnc_RNA retained_intron
-457671 enst00000565226 sg00000205250 e2f4-205 16 67194952 67198229 + mRNA protein_coding
-458645 enst00000568693 sg00000205250 e2f4-211 16 67193978 67194799 + lnc_RNA retained_intron
-460096 enst00000566368 sg00000205250 e2f4-207 16 67192527 67193060 + lnc_RNA retained_intron
-460128 enst00000564718 sg00000205250 e2f4-204 16 67192495 67194825 + lnc_RNA processed_transcript
-460408 enst00000561904 sg00000205250 e2f4-202 16 67192215 67194918 + lnc_RNA retained_intron
-460410 enst00000563238 sg00000205250 e2f4-203 16 67192213 67193484 + lnc_RNA retained_intron
-460415 enst00000569573 sg00000205250 e2f4-213 16 67192208 67196008 + mRNA nonsense_mediated_decay
-460416 enst00000568839 sg00000205250 e2f4-212 16 67192207 67196008 + mRNA nonsense_mediated_decay
-460433 enst00000565849 sg00000205250 e2f4-206 16 67192190 67194819 + mRNA nonsense_mediated_decay
-460438 enst00000567007 sg00000205250 e2f4-208 16 67192185 67198917 + lnc_RNA retained_intron
-460449 enst00000568485 sg00000205250 e2f4-210 16 67192174 67193278 + lnc_RNA retained_intron
-460468 enst00000379378 sg00000205250 e2f4-201 16 67192155 67198918 + mRNA protein_coding
-462438 enst00000562887 sg00000179044 exoc3l1-203 16 67187031 67190185 - lnc_RNA processed_transcript
-462451 enst00000545725 sg00000179044 exoc3l1-202 16 67184379 67190172 - mRNA protein_coding
-462485 enst00000564418 sg00000179044 exoc3l1-207 16 67187721 67190138 - mRNA protein_coding
-462487 enst00000563889 sg00000179044 exoc3l1-205 16 67184380 67190136 - mRNA protein_coding
-462487 enst00000314586 sg00000179044 exoc3l1-201 16 67184379 67190136 - mRNA protein_coding
-462524 enst00000564324 sg00000179044 exoc3l1-206 16 67184380 67190099 - mRNA nonsense_mediated_decay
-466959 enst00000563536 sg00000179044 exoc3l1-204 16 67184381 67185664 - lnc_RNA retained_intron
-468583 enst00000290881 sg00000196123 kiaa0895l-201 16 67175604 67184040 - mRNA protein_coding
-468660 enst00000563902 sg00000196123 kiaa0895l-206 16 67175599 67183963 - mRNA protein_coding
-468661 enst00000564423 sg00000196123 kiaa0895l-208 16 67179430 67183962 - lnc_RNA processed_transcript
-468671 enst00000561621 sg00000196123 kiaa0895l-202 16 67175604 67183952 - mRNA protein_coding
469010 enst00000565750 sg00000072736 nfatc3-215 16 68123030 68138784 + mRNA protein_coding
-469037 enst00000563831 sg00000196123 kiaa0895l-205 16 67176771 67183586 - lnc_RNA processed_transcript
-472268 enst00000570009 sg00000196123 kiaa0895l-212 16 67178445 67180355 - lnc_RNA processed_transcript
-472534 enst00000568165 sg00000196123 kiaa0895l-210 16 67179481 67180089 - lnc_RNA retained_intron
-472561 enst00000568563 sg00000196123 kiaa0895l-211 16 67175604 67180062 - mRNA protein_coding
-472662 enst00000564835 sg00000196123 kiaa0895l-209 16 67179118 67179961 - lnc_RNA retained_intron
-473071 enst00000561679 sg00000196123 kiaa0895l-203 16 67175604 67179552 - lnc_RNA retained_intron
-473295 enst00000563918 sg00000196123 kiaa0895l-207 16 67176650 67179328 - lnc_RNA processed_transcript
-476168 enst00000562514 sg00000196123 kiaa0895l-204 16 67175602 67176455 - lnc_RNA processed_transcript
-477779 enst00000564860 sg00000140939 nol3-205 16 67174844 67175260 + mRNA protein_coding
-478621 enst00000568146 sg00000140939 nol3-211 16 67174002 67175735 + mRNA protein_coding
-478639 enst00000563258 sg00000140939 nol3-202 16 67173984 67175453 + mRNA protein_coding
-478669 enst00000568503 sg00000140939 nol3-213 16 67173954 67175681 + lnc_RNA retained_intron
-478672 enst00000566871 sg00000140939 nol3-209 16 67173951 67175199 + mRNA protein_coding
-480989 enst00000568199 sg00000140939 nol3-212 16 67171634 67173003 + lnc_RNA processed_transcript
-482081 enst00000565645 sg00000140939 nol3-208 16 67170542 67173929 + lnc_RNA processed_transcript
-482083 enst00000564053 sg00000140939 nol3-204 16 67170540 67175485 + mRNA protein_coding
-482098 enst00000564992 sg00000140939 nol3-206 16 67170525 67174944 + mRNA protein_coding
-482121 enst00000568086 sg00000140939 nol3-210 16 67170502 67171656 + lnc_RNA retained_intron
-482126 enst00000268605 sg00000140939 nol3-201 16 67170497 67175735 + mRNA protein_coding
-482126 enst00000563439 sg00000140939 nol3-203 16 67170497 67174741 + mRNA protein_coding
-482469 enst00000565560 sg00000140939 nol3-207 16 67170154 67174848 + mRNA protein_coding
-483549 enst00000521916 sg00000102878 hsf4-217 16 67169074 67169941 + mRNA protein_coding
-484784 enst00000520304 sg00000102878 hsf4-211 16 67167839 67169941 + mRNA protein_coding
-485202 enst00000520247 sg00000102878 hsf4-210 16 67167421 67167804 + lnc_RNA retained_intron
-485243 enst00000520528 sg00000102878 hsf4-212 16 67167380 67169903 + mRNA nonsense_mediated_decay
-485435 enst00000520833 sg00000102878 hsf4-213 16 67167188 67169710 + lnc_RNA retained_intron
-485452 enst00000519601 sg00000102878 hsf4-209 16 67167171 67169781 + mRNA protein_coding
-486290 enst00000517867 sg00000102878 hsf4-206 16 67166333 67167381 + lnc_RNA processed_transcript
-486312 enst00000519105 sg00000102878 hsf4-207 16 67166311 67167222 + lnc_RNA retained_intron
-486347 enst00000522459 sg00000102878 hsf4-221 16 67166276 67167292 + lnc_RNA retained_intron
-486366 enst00000522027 sg00000102878 hsf4-219 16 67166257 67167543 + lnc_RNA retained_intron
-486438 enst00000517680 sg00000102878 hsf4-202 16 67166185 67167479 + lnc_RNA retained_intron
-486576 enst00000517750 sg00000102878 hsf4-205 16 67166047 67169040 + mRNA protein_coding
-486784 enst00000519224 sg00000102878 hsf4-208 16 67165839 67167917 + mRNA nonsense_mediated_decay
-487098 enst00000517729 sg00000102878 hsf4-204 16 67165525 67167490 + mRNA protein_coding
-487723 enst00000523077 sg00000102878 hsf4-223 16 67164900 67165815 + lnc_RNA retained_intron
-487811 enst00000584272 sg00000102878 hsf4-225 16 67164812 67169945 + mRNA protein_coding
-487811 enst00000521374 sg00000102878 hsf4-215 16 67164812 67169821 + mRNA protein_coding
-487811 enst00000517685 sg00000102878 hsf4-203 16 67164812 67169783 + mRNA protein_coding
-487833 enst00000523562 sg00000102878 hsf4-224 16 67164790 67169945 + mRNA nonsense_mediated_decay
-487833 enst00000521624 sg00000102878 hsf4-216 16 67164790 67169941 + mRNA nonsense_mediated_decay
-487852 enst00000521314 sg00000102878 hsf4-214 16 67164771 67169929 + mRNA nonsense_mediated_decay
-487878 enst00000522023 sg00000102878 hsf4-218 16 67164745 67166154 + lnc_RNA retained_intron
-487879 enst00000434833 sg00000102878 hsf4-201 16 67164744 67169910 + mRNA nonsense_mediated_decay
-487880 enst00000522295 sg00000102878 hsf4-220 16 67164743 67169939 + mRNA nonsense_mediated_decay
-487942 enst00000522870 sg00000102878 hsf4-222 16 67164681 67168883 + lnc_RNA retained_intron
-488482 enst00000523360 sg00000265690 ac074143.1-204 16 67164141 67164819 + lnc_RNA processed_transcript
-488817 enst00000518603 sg00000135722 fbxl8-204 16 67163806 67164461 + lnc_RNA retained_intron
-488915 enst00000518227 sg00000265690 ac074143.1-203 16 67163708 67165642 + mRNA nonsense_mediated_decay
-488939 enst00000518753 sg00000265690 ac074143.1-202 16 67163684 67165815 + mRNA nonsense_mediated_decay
-489238 enst00000580114 sg00000265690 ac074143.1-201 16 67163385 67165808 + mRNA nonsense_mediated_decay
-490934 enst00000519378 sg00000135722 fbxl8-205 16 67161689 67163184 + mRNA protein_coding
-491503 enst00000523893 sg00000135722 fbxl8-209 16 67161120 67163081 + mRNA protein_coding
-492618 enst00000521920 sg00000135722 fbxl8-208 16 67160005 67162954 + mRNA protein_coding
-492650 enst00000517382 sg00000135722 fbxl8-202 16 67159973 67164570 + mRNA protein_coding
-492662 enst00000519917 sg00000135722 fbxl8-206 16 67159961 67164174 + mRNA protein_coding
-492666 enst00000258200 sg00000135722 fbxl8-201 16 67159957 67164174 + mRNA protein_coding
-492674 enst00000519945 sg00000135722 fbxl8-207 16 67159949 67164065 + mRNA nonsense_mediated_decay
-492691 enst00000518148 sg00000135722 fbxl8-203 16 67159932 67162663 + mRNA protein_coding
-492714 enst00000345057 sg00000102871 tradd-201 16 67154185 67159909 - mRNA protein_coding
-492725 enst00000566104 sg00000102871 tradd-204 16 67155751 67159898 - lnc_RNA processed_transcript
-495942 enst00000563348 sg00000102871 tradd-203 16 67155539 67156681 - lnc_RNA retained_intron
-496374 enst00000486556 sg00000102871 tradd-202 16 67154199 67156249 - mRNA protein_coding
-497205 enst00000566247 sg00000102871 tradd-205 16 67154833 67155418 - lnc_RNA retained_intron

Source file: /hps/research1/birney/users/adrien/analyses/cancer_DNA_promethion/run_1_2_3_4/DNA_pipeline_2/results/methylation/pycometh_meth_comp_CGI_3/out.tsv.gz

MD5 hash: 9aa0e3f69cb4e12345c3758eb68a5efc