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CpG interval report generated on 20/05/20 with pycoMeth 0.4.6
Interval details
| pvalue rank | chromosome | start | end | length | number of samples | number of CpGs | pvalue | adjusted pvalue |
|---|---|---|---|---|---|---|---|---|
| #79 | 16 | 2236530 | 2238140 | 1610 | 3 | 51 | 2.72365e-19 | 3.4287e-17 |
Methylation log-likelihood ratio by CpG position
Distribution of CpG methylation log-likelihood ratio by sample
Closest transcripts TSS
| distance to tss | transcript id | gene id | transcript name | chromosome | start | end | strand | feature type | transcript biotype |
|---|---|---|---|---|---|---|---|---|---|
| 0 | enst00000564055 | sg00000259780 | ac009065.2-201 | 16 | 2235689 | 2236913 | - | lnc_RNA | lncrna |
| 0 | enst00000569184 | sg00000167968 | dnase1l2-205 | 16 | 2236826 | 2238000 | + | mRNA | protein_coding |
| 0 | enst00000382437 | sg00000167968 | dnase1l2-202 | 16 | 2236725 | 2238711 | + | mRNA | protein_coding |
| -61 | enst00000567494 | sg00000167968 | dnase1l2-204 | 16 | 2236469 | 2238711 | + | mRNA | protein_coding |
| -63 | enst00000613572 | sg00000167968 | dnase1l2-206 | 16 | 2236467 | 2238708 | + | mRNA | protein_coding |
| -86 | enst00000320700 | sg00000167968 | dnase1l2-201 | 16 | 2236444 | 2238711 | + | mRNA | protein_coding |
| -714 | enst00000564065 | sg00000167968 | dnase1l2-203 | 16 | 2235816 | 2238711 | + | mRNA | protein_coding |
| -1930 | enst00000567111 | sg00000167967 | e4f1-208 | 16 | 2234600 | 2235367 | + | lnc_RNA | retained_intron |
| 2347 | enst00000565709 | sg00000261663 | ac009065.9-201 | 16 | 2240487 | 2241818 | + | lnc_RNA | lncrna |
| -2811 | enst00000564930 | sg00000167967 | e4f1-205 | 16 | 2233719 | 2234195 | + | lnc_RNA | retained_intron |
| -3524 | enst00000563643 | sg00000167967 | e4f1-203 | 16 | 2233006 | 2234212 | + | lnc_RNA | retained_intron |
| 6298 | enst00000563447 | sg00000167969 | eci1-205 | 16 | 2242415 | 2244438 | - | lnc_RNA | retained_intron |
| -8137 | enst00000569796 | sg00000167967 | e4f1-209 | 16 | 2228393 | 2235741 | + | lnc_RNA | retained_intron |
| -12814 | enst00000565413 | sg00000167967 | e4f1-207 | 16 | 2223716 | 2232908 | + | mRNA | protein_coding |
| -12915 | enst00000562589 | sg00000167967 | e4f1-202 | 16 | 2223615 | 2232763 | + | mRNA | nonsense_mediated_decay |
| -12936 | enst00000564139 | sg00000167967 | e4f1-204 | 16 | 2223594 | 2235742 | + | mRNA | protein_coding |
| -12939 | enst00000301727 | sg00000167967 | e4f1-201 | 16 | 2223591 | 2235742 | + | mRNA | protein_coding |
| -12950 | enst00000565090 | sg00000167967 | e4f1-206 | 16 | 2223580 | 2235742 | + | mRNA | protein_coding |
| 13405 | enst00000563029 | sg00000167969 | eci1-204 | 16 | 2243169 | 2251545 | - | lnc_RNA | retained_intron |
| 13422 | enst00000561688 | sg00000167969 | eci1-202 | 16 | 2244138 | 2251562 | - | lnc_RNA | retained_intron |
| 13432 | enst00000562238 | sg00000167969 | eci1-203 | 16 | 2239895 | 2251572 | - | mRNA | protein_coding |
| 13447 | enst00000301729 | sg00000167969 | eci1-201 | 16 | 2239402 | 2251587 | - | mRNA | protein_coding |
| 13451 | enst00000566379 | sg00000167969 | eci1-206 | 16 | 2240037 | 2251591 | - | mRNA | protein_coding |
| 14160 | enst00000570258 | sg00000167969 | eci1-207 | 16 | 2239940 | 2252300 | - | mRNA | protein_coding |
| 18726 | enst00000562205 | sg00000205937 | rnps1-206 | 16 | 2253123 | 2256866 | - | lnc_RNA | retained_intron |
| 20616 | enst00000565243 | sg00000205937 | rnps1-213 | 16 | 2253899 | 2258756 | - | lnc_RNA | retained_intron |
| -21690 | enst00000333503 | sg00000184207 | pgp-201 | 16 | 2211593 | 2214840 | - | mRNA | protein_coding |
| -22631 | enst00000562001 | sg00000184207 | pgp-202 | 16 | 2212262 | 2213899 | - | mRNA | nonsense_mediated_decay |
| -24533 | enst00000561544 | sg00000261532 | ac009065.8-201 | 16 | 2211997 | 2212863 | + | lnc_RNA | lncrna |
| -24580 | enst00000328540 | sg00000182685 | bricd5-201 | 16 | 2209253 | 2211950 | - | mRNA | protein_coding |
| -25625 | enst00000566018 | sg00000182685 | bricd5-203 | 16 | 2209979 | 2210905 | - | mRNA | protein_coding |
| -25697 | enst00000562360 | sg00000182685 | bricd5-202 | 16 | 2209362 | 2210833 | - | mRNA | protein_coding |
| 26191 | enst00000566397 | sg00000205937 | rnps1-219 | 16 | 2253126 | 2264331 | - | mRNA | protein_coding |
| -26385 | enst00000566795 | sg00000182685 | bricd5-204 | 16 | 2209654 | 2210145 | - | lnc_RNA | retained_intron |
| 26736 | enst00000563857 | sg00000205937 | rnps1-208 | 16 | 2263897 | 2264876 | - | lnc_RNA | retained_intron |
| 27110 | enst00000565870 | sg00000205937 | rnps1-217 | 16 | 2253975 | 2265250 | - | mRNA | protein_coding |
| 28383 | enst00000565589 | sg00000205937 | rnps1-215 | 16 | 2264268 | 2266523 | - | mRNA | protein_coding |
| -28703 | enst00000562239 | sg00000167965 | mlst8-206 | 16 | 2207827 | 2208538 | + | lnc_RNA | retained_intron |
| -28944 | enst00000562392 | sg00000167965 | mlst8-208 | 16 | 2207586 | 2209392 | + | lnc_RNA | retained_intron |
| 29106 | enst00000564764 | sg00000205937 | rnps1-211 | 16 | 2262812 | 2267246 | - | mRNA | protein_coding |
| 29166 | enst00000565333 | sg00000205937 | rnps1-214 | 16 | 2263260 | 2267306 | - | mRNA | protein_coding |
| 29188 | enst00000566783 | sg00000205937 | rnps1-221 | 16 | 2265503 | 2267328 | - | lnc_RNA | retained_intron |
| 29197 | enst00000569709 | sg00000205937 | rnps1-225 | 16 | 2263214 | 2267337 | - | mRNA | protein_coding |
| 29463 | enst00000565678 | sg00000205937 | rnps1-216 | 16 | 2253130 | 2267603 | - | mRNA | protein_coding |
| 29689 | enst00000568631 | sg00000205937 | rnps1-223 | 16 | 2253828 | 2267829 | - | mRNA | protein_coding |
| 29693 | enst00000566180 | sg00000205937 | rnps1-218 | 16 | 2263096 | 2267833 | - | mRNA | protein_coding |
| 29708 | enst00000397086 | sg00000205937 | rnps1-203 | 16 | 2253116 | 2267848 | - | mRNA | protein_coding |
| 29712 | enst00000564601 | sg00000205937 | rnps1-210 | 16 | 2262754 | 2267852 | - | mRNA | protein_coding |
| 29914 | enst00000561518 | sg00000205937 | rnps1-204 | 16 | 2254029 | 2268054 | - | mRNA | protein_coding |
| 29926 | enst00000561718 | sg00000205937 | rnps1-205 | 16 | 2253139 | 2268066 | - | mRNA | protein_coding |
| 29931 | enst00000567147 | sg00000205937 | rnps1-222 | 16 | 2253856 | 2268071 | - | mRNA | protein_coding |
| 29951 | enst00000564311 | sg00000205937 | rnps1-209 | 16 | 2255641 | 2268091 | - | mRNA | nonsense_mediated_decay |
| 29954 | enst00000562690 | sg00000205937 | rnps1-207 | 16 | 2263134 | 2268094 | - | mRNA | protein_coding |
| 29955 | enst00000569598 | sg00000205937 | rnps1-224 | 16 | 2253840 | 2268095 | - | mRNA | protein_coding |
| 29974 | enst00000301730 | sg00000205937 | rnps1-201 | 16 | 2253846 | 2268114 | - | mRNA | protein_coding |
| 29974 | enst00000564822 | sg00000205937 | rnps1-212 | 16 | 2264315 | 2268114 | - | mRNA | protein_coding |
| 29974 | enst00000570051 | sg00000205937 | rnps1-226 | 16 | 2262208 | 2268114 | - | lnc_RNA | retained_intron |
| 29986 | enst00000320225 | sg00000205937 | rnps1-202 | 16 | 2253120 | 2268126 | - | mRNA | protein_coding |
| -30012 | enst00000569848 | sg00000167965 | mlst8-234 | 16 | 2206518 | 2207547 | + | lnc_RNA | retained_intron |
| 30015 | enst00000563734 | sg00000260778 | ac009065.5-201 | 16 | 2268155 | 2273418 | + | lnc_RNA | lncrna |
| -30165 | enst00000564319 | sg00000167965 | mlst8-217 | 16 | 2206365 | 2207976 | + | lnc_RNA | processed_transcript |
| 30257 | enst00000566458 | sg00000205937 | rnps1-220 | 16 | 2253117 | 2268397 | - | mRNA | protein_coding |
| 30483 | enst00000567888 | sg00000260778 | ac009065.5-202 | 16 | 2268623 | 2273039 | + | lnc_RNA | lncrna |
| -30501 | enst00000563067 | sg00000167965 | mlst8-212 | 16 | 2206029 | 2209370 | + | lnc_RNA | retained_intron |
| 30523 | enst00000562838 | sg00000260778 | ac009065.5-203 | 16 | 2268663 | 2273124 | + | lnc_RNA | lncrna |
| -30761 | enst00000565250 | sg00000167965 | mlst8-219 | 16 | 2205769 | 2209352 | + | mRNA | protein_coding |
| -30789 | enst00000397124 | sg00000167965 | mlst8-203 | 16 | 2205741 | 2209397 | + | mRNA | protein_coding |
| -30799 | enst00000566835 | sg00000167965 | mlst8-226 | 16 | 2205731 | 2209416 | + | mRNA | nonsense_mediated_decay |
| -31036 | enst00000301724 | sg00000167965 | mlst8-201 | 16 | 2205494 | 2209412 | + | mRNA | protein_coding |
| -31040 | enst00000565717 | sg00000167965 | mlst8-223 | 16 | 2205490 | 2208328 | + | mRNA | nonsense_mediated_decay |
| -31043 | enst00000567282 | sg00000167965 | mlst8-227 | 16 | 2205487 | 2208399 | + | mRNA | nonsense_mediated_decay |
| -31046 | enst00000564679 | sg00000167965 | mlst8-218 | 16 | 2205484 | 2206820 | + | lnc_RNA | retained_intron |
| -31049 | enst00000561651 | sg00000167965 | mlst8-204 | 16 | 2205481 | 2208492 | + | lnc_RNA | processed_transcript |
| -31049 | enst00000565687 | sg00000167965 | mlst8-222 | 16 | 2205481 | 2208612 | + | mRNA | nonsense_mediated_decay |
| -31053 | enst00000566653 | sg00000167965 | mlst8-225 | 16 | 2205477 | 2206721 | + | lnc_RNA | retained_intron |
| -31059 | enst00000568194 | sg00000167965 | mlst8-230 | 16 | 2205471 | 2209397 | + | lnc_RNA | retained_intron |
| -31065 | enst00000563107 | sg00000167965 | mlst8-213 | 16 | 2205465 | 2208342 | + | mRNA | nonsense_mediated_decay |
| -31073 | enst00000565269 | sg00000167965 | mlst8-220 | 16 | 2205457 | 2206723 | + | lnc_RNA | retained_intron |
| -31074 | enst00000562479 | sg00000167965 | mlst8-209 | 16 | 2205456 | 2207253 | + | mRNA | protein_coding |
| -31074 | enst00000562844 | sg00000167965 | mlst8-210 | 16 | 2205456 | 2207297 | + | lnc_RNA | processed_transcript |
| -31074 | enst00000567928 | sg00000167965 | mlst8-229 | 16 | 2205456 | 2206778 | + | lnc_RNA | retained_intron |
| -31076 | enst00000569417 | sg00000167965 | mlst8-232 | 16 | 2205454 | 2209453 | + | mRNA | protein_coding |
| -31076 | enst00000565330 | sg00000167965 | mlst8-221 | 16 | 2205454 | 2209098 | + | lnc_RNA | retained_intron |
| -31076 | enst00000562352 | sg00000167965 | mlst8-207 | 16 | 2205454 | 2208558 | + | mRNA | protein_coding |
| -31076 | enst00000567623 | sg00000167965 | mlst8-228 | 16 | 2205454 | 2207326 | + | mRNA | nonsense_mediated_decay |
| -31076 | enst00000562851 | sg00000167965 | mlst8-211 | 16 | 2205454 | 2207250 | + | mRNA | nonsense_mediated_decay |
| -31080 | enst00000564294 | sg00000167965 | mlst8-216 | 16 | 2205450 | 2206880 | + | lnc_RNA | retained_intron |
| -31273 | enst00000568542 | sg00000167965 | mlst8-231 | 16 | 2205257 | 2209393 | + | lnc_RNA | retained_intron |
| -31305 | enst00000570224 | sg00000167965 | mlst8-235 | 16 | 2205225 | 2208324 | + | mRNA | nonsense_mediated_decay |
| -31326 | enst00000382450 | sg00000167965 | mlst8-202 | 16 | 2205204 | 2209396 | + | mRNA | protein_coding |
| -31353 | enst00000564088 | sg00000167965 | mlst8-215 | 16 | 2205177 | 2209396 | + | mRNA | protein_coding |
| -31883 | enst00000565926 | sg00000167965 | mlst8-224 | 16 | 2204647 | 2205470 | + | lnc_RNA | processed_transcript |
| -31883 | enst00000569457 | sg00000167965 | mlst8-233 | 16 | 2204647 | 2208244 | + | mRNA | protein_coding |
| -31934 | enst00000563179 | sg00000167965 | mlst8-214 | 16 | 2204596 | 2206381 | + | mRNA | protein_coding |
| -32282 | enst00000562043 | sg00000167965 | mlst8-205 | 16 | 2204248 | 2205382 | + | lnc_RNA | processed_transcript |
| 32573 | enst00000578964 | sg00000266643 | mir3677-201 | 16 | 2270713 | 2270772 | + | miRNA | mirna |
| 33607 | enst00000401276 | sg00000284346 | mir940-201 | 16 | 2271747 | 2271840 | + | miRNA | mirna |
| 36480 | enst00000584656 | sg00000264004 | mir4717-201 | 16 | 2274620 | 2274691 | + | miRNA | mirna |
| -39925 | enst00000343516 | sg00000167971 | caskin1-201 | 16 | 2177180 | 2196605 | - | mRNA | protein_coding |
| 45601 | enst00000566200 | sg00000167972 | abca3-204 | 16 | 2278295 | 2283741 | - | lnc_RNA | retained_intron |
| 45832 | enst00000569062 | sg00000167972 | abca3-206 | 16 | 2281393 | 2283972 | - | lnc_RNA | retained_intron |
| -47034 | enst00000562055 | sg00000167971 | caskin1-202 | 16 | 2188897 | 2189496 | - | lnc_RNA | retained_intron |
| -51510 | enst00000564289 | sg00000167971 | caskin1-203 | 16 | 2181899 | 2185020 | - | lnc_RNA | processed_transcript |
| -63017 | enst00000570169 | sg00000131653 | traf7-207 | 16 | 2173513 | 2175219 | + | lnc_RNA | retained_intron |
| -72988 | enst00000567645 | sg00000131653 | traf7-204 | 16 | 2163542 | 2171356 | + | mRNA | protein_coding |
| -80701 | enst00000564067 | sg00000131653 | traf7-202 | 16 | 2155829 | 2172589 | + | mRNA | nonsense_mediated_decay |
| -80726 | enst00000567653 | sg00000131653 | traf7-205 | 16 | 2155804 | 2168510 | + | mRNA | protein_coding |
| -80748 | enst00000326181 | sg00000131653 | traf7-201 | 16 | 2155782 | 2178129 | + | mRNA | protein_coding |
| -80752 | enst00000569686 | sg00000131653 | traf7-206 | 16 | 2155778 | 2171382 | + | lnc_RNA | retained_intron |
| -80832 | enst00000565383 | sg00000131653 | traf7-203 | 16 | 2155698 | 2168515 | + | mRNA | protein_coding |
| -81172 | enst00000563192 | sg00000260260 | snhg19-201 | 16 | 2154797 | 2155358 | - | lnc_RNA | lncrna |
| -81425 | enst00000383903 | sg00000206630 | snord60-201 | 16 | 2155023 | 2155105 | - | snoRNA | snorna |
| -81426 | enst00000628177 | sg00000281010 | ac009065.10-201 | 16 | 2155025 | 2155104 | - | snoRNA | snorna |
| -83488 | enst00000566724 | sg00000167964 | rab26-207 | 16 | 2153042 | 2154140 | + | mRNA | protein_coding |
| -84954 | enst00000567145 | sg00000167964 | rab26-208 | 16 | 2151576 | 2153376 | + | lnc_RNA | retained_intron |
| -86548 | enst00000561600 | sg00000167964 | rab26-203 | 16 | 2149982 | 2153389 | + | lnc_RNA | retained_intron |
| -87905 | enst00000210187 | sg00000167964 | rab26-201 | 16 | 2148625 | 2154165 | + | mRNA | protein_coding |
| -87906 | enst00000562735 | sg00000167964 | rab26-204 | 16 | 2148624 | 2154110 | + | lnc_RNA | retained_intron |
| -88257 | enst00000564426 | sg00000167964 | rab26-205 | 16 | 2148273 | 2154139 | + | lnc_RNA | retained_intron |
| -88386 | enst00000541451 | sg00000167964 | rab26-202 | 16 | 2148144 | 2153421 | + | mRNA | protein_coding |
| 91584 | enst00000567910 | sg00000167972 | abca3-205 | 16 | 2323339 | 2329724 | - | mRNA | protein_coding |
| 94592 | enst00000468708 | sg00000243445 | ac106820.1-201 | 16 | 2332313 | 2332732 | - | pseudogenic_transcript | processed_pseudogene |
| -95727 | enst00000565592 | sg00000167964 | rab26-206 | 16 | 2140803 | 2153070 | + | mRNA | nonsense_mediated_decay |
| -100401 | enst00000583743 | sg00000264397 | mir3180-5-201 | 16 | 2135977 | 2136129 | - | miRNA | mirna |
| -100632 | enst00000262304 | sg00000008710 | pkd1-201 | 16 | 2088708 | 2135898 | - | mRNA | protein_coding |
| -100632 | enst00000423118 | sg00000008710 | pkd1-203 | 16 | 2088710 | 2135898 | - | mRNA | protein_coding |
| 101010 | enst00000512848 | sg00000238098 | abca17p-206 | 16 | 2339150 | 2361654 | + | lnc_RNA | processed_transcript |
| 101150 | enst00000640929 | sg00000238098 | abca17p-207 | 16 | 2339290 | 2367034 | + | lnc_RNA | processed_transcript |
| 102457 | enst00000563623 | sg00000167972 | abca3-203 | 16 | 2289048 | 2340597 | - | lnc_RNA | retained_intron |
| 102588 | enst00000301732 | sg00000167972 | abca3-201 | 16 | 2275881 | 2340728 | - | mRNA | protein_coding |
| 102606 | enst00000382381 | sg00000167972 | abca3-202 | 16 | 2275881 | 2340746 | - | mRNA | protein_coding |
| 102782 | enst00000469908 | sg00000238098 | abca17p-202 | 16 | 2340922 | 2426699 | + | lnc_RNA | processed_transcript |
| 102831 | enst00000482286 | sg00000238098 | abca17p-203 | 16 | 2340971 | 2362666 | + | lnc_RNA | retained_intron |
| 102979 | enst00000505660 | sg00000238098 | abca17p-205 | 16 | 2341119 | 2345933 | + | lnc_RNA | processed_transcript |
| -103411 | enst00000583451 | sg00000265867 | mir4516-201 | 16 | 2133119 | 2133204 | + | miRNA | mirna |
| -104679 | enst00000363189 | sg00000200059 | ac009065.1-201 | 16 | 2131851 | 2131950 | + | ncRNA | misc_rna |
| 104839 | enst00000466730 | sg00000238098 | abca17p-201 | 16 | 2342979 | 2361512 | + | lnc_RNA | processed_transcript |
| -117323 | enst00000562027 | sg00000260447 | ac009065.4-201 | 16 | 2119207 | 2120248 | + | lnc_RNA | lncrna |
| -118406 | enst00000570150 | sg00000008710 | pkd1-238 | 16 | 2116592 | 2118124 | - | lnc_RNA | processed_transcript |
| -118452 | enst00000488185 | sg00000008710 | pkd1-221 | 16 | 2106941 | 2118078 | - | mRNA | protein_coding |
| -118571 | enst00000568591 | sg00000008710 | pkd1-235 | 16 | 2106503 | 2117959 | - | mRNA | nonsense_mediated_decay |
| -122049 | enst00000565639 | sg00000008710 | pkd1-230 | 16 | 2103789 | 2114481 | - | lnc_RNA | retained_intron |
| -122406 | enst00000483731 | sg00000008710 | pkd1-216 | 16 | 2097728 | 2114124 | - | lnc_RNA | retained_intron |
| 123004 | enst00000494925 | sg00000238098 | abca17p-204 | 16 | 2361144 | 2425685 | + | pseudogenic_transcript | transcribed_unitary_pseudogene |
| -123250 | enst00000468674 | sg00000008710 | pkd1-204 | 16 | 2109291 | 2113280 | - | lnc_RNA | processed_transcript |
| -123456 | enst00000569983 | sg00000008710 | pkd1-237 | 16 | 2106521 | 2113074 | - | lnc_RNA | retained_intron |
| -123567 | enst00000415938 | sg00000008710 | pkd1-202 | 16 | 2097728 | 2112963 | - | lnc_RNA | retained_intron |
| -123632 | enst00000469241 | sg00000008710 | pkd1-205 | 16 | 2111458 | 2112898 | - | lnc_RNA | retained_intron |
| -123700 | enst00000483024 | sg00000008710 | pkd1-214 | 16 | 2106590 | 2112830 | - | mRNA | protein_coding |
| -124195 | enst00000568795 | sg00000261240 | ac009065.7-201 | 16 | 2112335 | 2113342 | + | lnc_RNA | lncrna |
| -126677 | enst00000487932 | sg00000008710 | pkd1-220 | 16 | 2090985 | 2109853 | - | mRNA | nonsense_mediated_decay |
| -127982 | enst00000473780 | sg00000008710 | pkd1-210 | 16 | 2107585 | 2108548 | - | lnc_RNA | processed_transcript |
| -128514 | enst00000496574 | sg00000008710 | pkd1-222 | 16 | 2097852 | 2108016 | - | lnc_RNA | retained_intron |
| -128771 | enst00000486339 | sg00000008710 | pkd1-219 | 16 | 2097728 | 2107759 | - | lnc_RNA | retained_intron |
| -128774 | enst00000483558 | sg00000008710 | pkd1-215 | 16 | 2106276 | 2107756 | - | lnc_RNA | processed_transcript |
| -129777 | enst00000612014 | sg00000284008 | mir6511b1-201 | 16 | 2106669 | 2106753 | - | miRNA | mirna |
| -130122 | enst00000561991 | sg00000008710 | pkd1-224 | 16 | 2103517 | 2106408 | - | lnc_RNA | processed_transcript |
| -130123 | enst00000564890 | sg00000008710 | pkd1-229 | 16 | 2105378 | 2106407 | - | lnc_RNA | retained_intron |
| -130426 | enst00000564865 | sg00000008710 | pkd1-228 | 16 | 2105357 | 2106104 | - | lnc_RNA | processed_transcript |
| -131132 | enst00000567946 | sg00000008710 | pkd1-234 | 16 | 2097728 | 2105398 | - | mRNA | protein_coding |
| -132737 | enst00000480227 | sg00000008710 | pkd1-213 | 16 | 2099078 | 2103793 | - | lnc_RNA | retained_intron |
| -132741 | enst00000562297 | sg00000008710 | pkd1-225 | 16 | 2097728 | 2103789 | - | lnc_RNA | retained_intron |
| -132843 | enst00000471603 | sg00000008710 | pkd1-207 | 16 | 2098833 | 2103687 | - | lnc_RNA | retained_intron |
| -132999 | enst00000475889 | sg00000008710 | pkd1-212 | 16 | 2102380 | 2103531 | - | lnc_RNA | processed_transcript |
| -133353 | enst00000474088 | sg00000008710 | pkd1-211 | 16 | 2101951 | 2103177 | - | lnc_RNA | retained_intron |
| -135765 | enst00000483814 | sg00000008710 | pkd1-217 | 16 | 2100023 | 2100765 | - | lnc_RNA | retained_intron |
| -135844 | enst00000469851 | sg00000008710 | pkd1-206 | 16 | 2099932 | 2100686 | - | lnc_RNA | retained_intron |
| -136077 | enst00000566905 | sg00000008710 | pkd1-232 | 16 | 2097752 | 2100453 | - | lnc_RNA | processed_transcript |
| -136123 | enst00000570193 | sg00000008710 | pkd1-239 | 16 | 2099462 | 2100407 | - | lnc_RNA | processed_transcript |
| -136230 | enst00000570253 | sg00000008710 | pkd1-240 | 16 | 2097728 | 2100300 | - | lnc_RNA | retained_intron |
| -136637 | enst00000566784 | sg00000008710 | pkd1-231 | 16 | 2097859 | 2099893 | - | lnc_RNA | processed_transcript |
| -139504 | enst00000565937 | sg00000261123 | ac009065.6-201 | 16 | 2094830 | 2097026 | - | lnc_RNA | lncrna |
| -142384 | enst00000472659 | sg00000008710 | pkd1-209 | 16 | 2092886 | 2094146 | - | lnc_RNA | retained_intron |
| -142646 | enst00000562425 | sg00000008710 | pkd1-226 | 16 | 2091823 | 2093884 | - | mRNA | nonsense_mediated_decay |
| -142657 | enst00000568796 | sg00000008710 | pkd1-236 | 16 | 2093355 | 2093873 | - | lnc_RNA | retained_intron |
| -143619 | enst00000567355 | sg00000008710 | pkd1-233 | 16 | 2092046 | 2092911 | - | lnc_RNA | retained_intron |
| -143933 | enst00000485120 | sg00000008710 | pkd1-218 | 16 | 2091428 | 2092597 | - | lnc_RNA | retained_intron |
| -144360 | enst00000561668 | sg00000008710 | pkd1-223 | 16 | 2090883 | 2092170 | - | mRNA | nonsense_mediated_decay |
| -144517 | enst00000564313 | sg00000008710 | pkd1-227 | 16 | 2090765 | 2092013 | - | lnc_RNA | retained_intron |
| -144991 | enst00000563284 | sg00000259933 | ac009065.3-202 | 16 | 2091539 | 2095433 | + | lnc_RNA | lncrna |
| -145094 | enst00000570072 | sg00000259933 | ac009065.3-201 | 16 | 2091436 | 2095017 | + | lnc_RNA | lncrna |
| -145691 | enst00000472577 | sg00000008710 | pkd1-208 | 16 | 2089527 | 2090839 | - | lnc_RNA | retained_intron |
| -146246 | enst00000408729 | sg00000221656 | mir1225-201 | 16 | 2090195 | 2090284 | - | miRNA | mirna |
| -150160 | enst00000646557 | sg00000103197 | tsc2-262 | 16 | 2086370 | 2087199 | + | lnc_RNA | retained_intron |
| -151351 | enst00000644278 | sg00000103197 | tsc2-247 | 16 | 2085179 | 2088040 | + | lnc_RNA | retained_intron |
| -151466 | enst00000642791 | sg00000103197 | tsc2-231 | 16 | 2085064 | 2089444 | + | lnc_RNA | retained_intron |
| -152732 | enst00000643177 | sg00000103197 | tsc2-238 | 16 | 2083798 | 2088040 | + | lnc_RNA | retained_intron |
| -153340 | enst00000642728 | sg00000103197 | tsc2-230 | 16 | 2083190 | 2086871 | + | lnc_RNA | processed_transcript |
| -154061 | enst00000645186 | sg00000103197 | tsc2-256 | 16 | 2082469 | 2084520 | + | mRNA | protein_coding |
| -154090 | enst00000569110 | sg00000103197 | tsc2-225 | 16 | 2082440 | 2088690 | + | mRNA | nonsense_mediated_decay |
| -154600 | enst00000569930 | sg00000103197 | tsc2-226 | 16 | 2081930 | 2088692 | + | lnc_RNA | retained_intron |
| -155055 | enst00000643533 | sg00000103197 | tsc2-241 | 16 | 2081475 | 2084297 | + | lnc_RNA | retained_intron |
| -156193 | enst00000643426 | sg00000103197 | tsc2-240 | 16 | 2080337 | 2088661 | + | lnc_RNA | retained_intron |
| -156242 | enst00000647180 | sg00000103197 | tsc2-267 | 16 | 2080288 | 2088690 | + | lnc_RNA | retained_intron |
| -156872 | enst00000646674 | sg00000103197 | tsc2-264 | 16 | 2079658 | 2088644 | + | lnc_RNA | retained_intron |
| -157610 | enst00000644722 | sg00000103197 | tsc2-253 | 16 | 2078920 | 2082467 | + | lnc_RNA | retained_intron |
| -157610 | enst00000561695 | sg00000103197 | tsc2-217 | 16 | 2078920 | 2079602 | + | lnc_RNA | retained_intron |
| -157756 | enst00000647042 | sg00000103197 | tsc2-266 | 16 | 2078774 | 2088692 | + | lnc_RNA | retained_intron |
| -158291 | enst00000497886 | sg00000103197 | tsc2-216 | 16 | 2078239 | 2088711 | + | lnc_RNA | retained_intron |
| -159126 | enst00000568366 | sg00000103197 | tsc2-221 | 16 | 2077404 | 2079349 | + | lnc_RNA | retained_intron |
| -160374 | enst00000471143 | sg00000103197 | tsc2-212 | 16 | 2076156 | 2079623 | + | mRNA | nonsense_mediated_decay |
| -160383 | enst00000483020 | sg00000103197 | tsc2-213 | 16 | 2076147 | 2079595 | + | mRNA | nonsense_mediated_decay |
| -160393 | enst00000645192 | sg00000103197 | tsc2-257 | 16 | 2076137 | 2076665 | + | lnc_RNA | retained_intron |
| -163935 | enst00000463808 | sg00000103197 | tsc2-210 | 16 | 2072595 | 2074652 | + | lnc_RNA | retained_intron |
| -164745 | enst00000646464 | sg00000103197 | tsc2-261 | 16 | 2071785 | 2074212 | + | mRNA | nonsense_mediated_decay |
| -164870 | enst00000563346 | sg00000103197 | tsc2-219 | 16 | 2071660 | 2074369 | + | lnc_RNA | retained_intron |
| -165141 | enst00000645024 | sg00000103197 | tsc2-255 | 16 | 2071389 | 2088577 | + | lnc_RNA | retained_intron |
| -166070 | enst00000645552 | sg00000103197 | tsc2-258 | 16 | 2070460 | 2075270 | + | lnc_RNA | retained_intron |
| -170301 | enst00000562474 | sg00000103197 | tsc2-218 | 16 | 2066229 | 2071534 | + | lnc_RNA | processed_transcript |
| -171117 | enst00000488675 | sg00000103197 | tsc2-214 | 16 | 2065413 | 2071897 | + | lnc_RNA | retained_intron |
| -172459 | enst00000568238 | sg00000103197 | tsc2-220 | 16 | 2064071 | 2065583 | + | lnc_RNA | retained_intron |
| -173692 | enst00000490108 | sg00000103197 | tsc2-215 | 16 | 2062838 | 2065628 | + | lnc_RNA | retained_intron |
| -173947 | enst00000642365 | sg00000103197 | tsc2-228 | 16 | 2062583 | 2088654 | + | mRNA | protein_coding |
| -174012 | enst00000568566 | sg00000103197 | tsc2-223 | 16 | 2062518 | 2071572 | + | mRNA | nonsense_mediated_decay |
| -174688 | enst00000463601 | sg00000103197 | tsc2-209 | 16 | 2061842 | 2065229 | + | lnc_RNA | retained_intron |
| -174770 | enst00000644847 | sg00000103197 | tsc2-254 | 16 | 2061760 | 2074920 | + | lnc_RNA | retained_intron |
| -175224 | enst00000646634 | sg00000103197 | tsc2-263 | 16 | 2061306 | 2088692 | + | lnc_RNA | processed_transcript |
| -180385 | enst00000467949 | sg00000103197 | tsc2-211 | 16 | 2056145 | 2063046 | + | lnc_RNA | processed_transcript |
| -182611 | enst00000643120 | sg00000103197 | tsc2-236 | 16 | 2053919 | 2055688 | + | lnc_RNA | retained_intron |
| -182958 | enst00000646823 | sg00000103197 | tsc2-265 | 16 | 2053572 | 2060816 | + | lnc_RNA | retained_intron |
| -183097 | enst00000432909 | sg00000103197 | tsc2-205 | 16 | 2053433 | 2056230 | + | mRNA | protein_coding |
| -183128 | enst00000644417 | sg00000103197 | tsc2-251 | 16 | 2053402 | 2056733 | + | mRNA | nonsense_mediated_decay |
| -186093 | enst00000647242 | sg00000103197 | tsc2-269 | 16 | 2050437 | 2064941 | + | lnc_RNA | retained_intron |
| -187789 | enst00000647234 | sg00000103197 | tsc2-268 | 16 | 2048741 | 2065298 | + | lnc_RNA | retained_intron |
| -187794 | enst00000568692 | sg00000103197 | tsc2-224 | 16 | 2048736 | 2055892 | + | lnc_RNA | retained_intron |
| -187907 | enst00000644399 | sg00000103197 | tsc2-250 | 16 | 2048623 | 2088710 | + | mRNA | protein_coding |
| -188328 | enst00000568454 | sg00000103197 | tsc2-222 | 16 | 2048202 | 2088715 | + | mRNA | protein_coding |
| -188487 | enst00000642561 | sg00000103197 | tsc2-229 | 16 | 2048043 | 2088671 | + | mRNA | protein_coding |
| -188489 | enst00000644043 | sg00000103197 | tsc2-244 | 16 | 2048041 | 2088718 | + | mRNA | protein_coding |
| -188489 | enst00000642797 | sg00000103197 | tsc2-232 | 16 | 2048041 | 2088718 | + | mRNA | protein_coding |
| -188492 | enst00000642812 | sg00000103197 | tsc2-233 | 16 | 2048038 | 2065103 | + | lnc_RNA | retained_intron |
| -188497 | enst00000439117 | sg00000103197 | tsc2-206 | 16 | 2048033 | 2088703 | + | mRNA | nonsense_mediated_decay |
| -188497 | enst00000644329 | sg00000103197 | tsc2-248 | 16 | 2048033 | 2088691 | + | mRNA | protein_coding |
| -188506 | enst00000642206 | sg00000103197 | tsc2-227 | 16 | 2048024 | 2053425 | + | mRNA | protein_coding |
| -188510 | enst00000350773 | sg00000103197 | tsc2-202 | 16 | 2048020 | 2088718 | + | mRNA | protein_coding |
| -188516 | enst00000439673 | sg00000103197 | tsc2-207 | 16 | 2048014 | 2088701 | + | mRNA | protein_coding |
| -188518 | enst00000643298 | sg00000103197 | tsc2-239 | 16 | 2048012 | 2076092 | + | mRNA | nonsense_mediated_decay |
| -188521 | enst00000646388 | sg00000103197 | tsc2-260 | 16 | 2048009 | 2088720 | + | mRNA | protein_coding |
| -188522 | enst00000644222 | sg00000103197 | tsc2-246 | 16 | 2048008 | 2065174 | + | lnc_RNA | retained_intron |
| -188535 | enst00000644335 | sg00000103197 | tsc2-249 | 16 | 2047995 | 2088723 | + | mRNA | protein_coding |
| -188541 | enst00000401874 | sg00000103197 | tsc2-204 | 16 | 2047989 | 2088718 | + | mRNA | protein_coding |
| -188544 | enst00000642936 | sg00000103197 | tsc2-234 | 16 | 2047986 | 2088716 | + | mRNA | protein_coding |
| -188545 | enst00000219476 | sg00000103197 | tsc2-201 | 16 | 2047985 | 2089491 | + | mRNA | protein_coding |
| -188545 | enst00000643745 | sg00000103197 | tsc2-242 | 16 | 2047985 | 2065219 | + | mRNA | nonsense_mediated_decay |
| -188545 | enst00000643149 | sg00000103197 | tsc2-237 | 16 | 2047985 | 2064935 | + | lnc_RNA | retained_intron |
| -188545 | enst00000461648 | sg00000103197 | tsc2-208 | 16 | 2047985 | 2055799 | + | lnc_RNA | retained_intron |
| -188547 | enst00000644135 | sg00000103197 | tsc2-245 | 16 | 2047983 | 2071616 | + | mRNA | nonsense_mediated_decay |
| -188550 | enst00000382538 | sg00000103197 | tsc2-203 | 16 | 2047980 | 2088700 | + | mRNA | protein_coding |
| -188552 | enst00000644665 | sg00000103197 | tsc2-252 | 16 | 2047978 | 2065258 | + | lnc_RNA | retained_intron |
| -188553 | enst00000643946 | sg00000103197 | tsc2-243 | 16 | 2047977 | 2089487 | + | mRNA | protein_coding |
| -188553 | enst00000643088 | sg00000103197 | tsc2-235 | 16 | 2047977 | 2089245 | + | mRNA | protein_coding |
| -188563 | enst00000645591 | sg00000103197 | tsc2-259 | 16 | 2047967 | 2065258 | + | lnc_RNA | retained_intron |
| -188664 | enst00000219066 | sg00000065057 | nthl1-201 | 16 | 2039815 | 2047866 | - | mRNA | protein_coding |
| -188683 | enst00000623977 | sg00000065057 | nthl1-210 | 16 | 2046937 | 2047847 | - | lnc_RNA | retained_intron |
| -188696 | enst00000651570 | sg00000065057 | nthl1-212 | 16 | 2039820 | 2047834 | - | mRNA | protein_coding |
| -188736 | enst00000568513 | sg00000065057 | nthl1-209 | 16 | 2039821 | 2047794 | - | mRNA | nonsense_mediated_decay |
| -188744 | enst00000566380 | sg00000065057 | nthl1-207 | 16 | 2039820 | 2047786 | - | mRNA | protein_coding |
| -188752 | enst00000651583 | sg00000065057 | nthl1-213 | 16 | 2039821 | 2047778 | - | mRNA | protein_coding |
| -188787 | enst00000561841 | sg00000065057 | nthl1-202 | 16 | 2039852 | 2047743 | - | mRNA | nonsense_mediated_decay |
| -190316 | enst00000562120 | sg00000065057 | nthl1-204 | 16 | 2043484 | 2046214 | - | lnc_RNA | retained_intron |
| -190340 | enst00000651522 | sg00000065057 | nthl1-211 | 16 | 2039818 | 2046190 | - | mRNA | protein_coding |
| 191254 | enst00000293968 | sg00000162063 | ccnf-201 | 16 | 2429394 | 2458851 | + | mRNA | nonsense_mediated_decay |
| 191307 | enst00000397066 | sg00000162063 | ccnf-202 | 16 | 2429447 | 2458854 | + | mRNA | protein_coding |
| 191309 | enst00000569093 | sg00000162063 | ccnf-205 | 16 | 2429449 | 2436351 | + | lnc_RNA | retained_intron |
| -191704 | enst00000565406 | sg00000065057 | nthl1-206 | 16 | 2039820 | 2044826 | - | lnc_RNA | retained_intron |
| -192451 | enst00000562951 | sg00000065057 | nthl1-205 | 16 | 2039821 | 2044079 | - | lnc_RNA | processed_transcript |
| -192727 | enst00000567727 | sg00000065057 | nthl1-208 | 16 | 2039823 | 2043803 | - | lnc_RNA | retained_intron |
| -196062 | enst00000561862 | sg00000065057 | nthl1-203 | 16 | 2039820 | 2040468 | - | lnc_RNA | retained_intron |
| 197846 | enst00000564333 | sg00000162063 | ccnf-204 | 16 | 2435986 | 2437922 | + | lnc_RNA | retained_intron |
| 198963 | enst00000648756 | sg00000285970 | ac106820.6-201 | 16 | 2430702 | 2437103 | - | lnc_RNA | lncrna |
| -200549 | enst00000564033 | sg00000065054 | slc9a3r2-205 | 16 | 2035981 | 2038128 | + | lnc_RNA | retained_intron |
| -203259 | enst00000566198 | sg00000065054 | slc9a3r2-208 | 16 | 2033271 | 2038421 | + | mRNA | protein_coding |
| -203266 | enst00000565855 | sg00000065054 | slc9a3r2-207 | 16 | 2033264 | 2037980 | + | mRNA | protein_coding |
| -203718 | enst00000565086 | sg00000065054 | slc9a3r2-206 | 16 | 2032812 | 2036823 | + | lnc_RNA | processed_transcript |
| 205561 | enst00000564236 | sg00000162063 | ccnf-203 | 16 | 2443701 | 2449875 | + | mRNA | nonsense_mediated_decay |
| -206776 | enst00000561844 | sg00000065054 | slc9a3r2-203 | 16 | 2029754 | 2038024 | + | mRNA | protein_coding |
| -207003 | enst00000563587 | sg00000065054 | slc9a3r2-204 | 16 | 2029527 | 2038165 | + | mRNA | protein_coding |
| 207252 | enst00000637302 | sg00000283180 | mir6767-201 | 16 | 2445392 | 2445457 | + | miRNA | mirna |
| -209602 | enst00000432365 | sg00000065054 | slc9a3r2-202 | 16 | 2026928 | 2038489 | + | mRNA | protein_coding |
| -209628 | enst00000424542 | sg00000065054 | slc9a3r2-201 | 16 | 2026902 | 2039026 | + | mRNA | protein_coding |
| -211174 | enst00000567504 | sg00000065054 | slc9a3r2-209 | 16 | 2025356 | 2036389 | + | mRNA | protein_coding |
| 214837 | enst00000561653 | sg00000260095 | ac106820.3-201 | 16 | 2452581 | 2452977 | - | lnc_RNA | lncrna |
| -216628 | enst00000329610 | sg00000183971 | npw-201 | 16 | 2019902 | 2020619 | + | mRNA | protein_coding |
| -216745 | enst00000566435 | sg00000183971 | npw-202 | 16 | 2019785 | 2020755 | + | mRNA | protein_coding |
| 221826 | enst00000566085 | sg00000260874 | ac106820.5-201 | 16 | 2456252 | 2459966 | - | lnc_RNA | lncrna |
| 221839 | enst00000565827 | sg00000260874 | ac106820.5-202 | 16 | 2456835 | 2459979 | - | lnc_RNA | lncrna |
| 221946 | enst00000569496 | sg00000162062 | tedc2-210 | 16 | 2460086 | 2464926 | + | mRNA | protein_coding |
| 221954 | enst00000567489 | sg00000162062 | tedc2-208 | 16 | 2460094 | 2462723 | + | mRNA | protein_coding |
| 221962 | enst00000565537 | sg00000162062 | tedc2-205 | 16 | 2460102 | 2460757 | + | lnc_RNA | retained_intron |
| 221969 | enst00000361837 | sg00000162062 | tedc2-201 | 16 | 2460109 | 2464963 | + | mRNA | protein_coding |
| 221978 | enst00000569665 | sg00000162062 | tedc2-212 | 16 | 2460118 | 2461052 | + | lnc_RNA | retained_intron |
| 221978 | enst00000569994 | sg00000162062 | tedc2-213 | 16 | 2460118 | 2464962 | + | lnc_RNA | retained_intron |
| 221994 | enst00000563531 | sg00000162062 | tedc2-204 | 16 | 2460134 | 2464927 | + | mRNA | protein_coding |
| 222005 | enst00000569664 | sg00000162062 | tedc2-211 | 16 | 2460145 | 2462168 | + | lnc_RNA | retained_intron |
| 222005 | enst00000483320 | sg00000162062 | tedc2-202 | 16 | 2460145 | 2464963 | + | mRNA | protein_coding |
| 222017 | enst00000562253 | sg00000162062 | tedc2-203 | 16 | 2460157 | 2461449 | + | lnc_RNA | retained_intron |
| 222336 | enst00000568753 | sg00000162062 | tedc2-209 | 16 | 2460476 | 2464111 | + | mRNA | protein_coding |
| 222797 | enst00000565716 | sg00000162062 | tedc2-206 | 16 | 2460937 | 2464963 | + | mRNA | nonsense_mediated_decay |
| -223349 | enst00000582872 | sg00000265386 | rn7sl219p-201 | 16 | 2013181 | 2013476 | + | ncRNA | misc_rna |
| 223407 | enst00000566580 | sg00000162062 | tedc2-207 | 16 | 2461547 | 2462432 | + | lnc_RNA | retained_intron |
| 225827 | enst00000610734 | sg00000274805 | mir6768-201 | 16 | 2463967 | 2464038 | + | miRNA | mirna |
| -226604 | enst00000567649 | sg00000183971 | npw-203 | 16 | 2009926 | 2020592 | + | mRNA | protein_coding |
| -226709 | enst00000562103 | sg00000167962 | znf598-202 | 16 | 1997655 | 2009821 | - | mRNA | protein_coding |
| -226709 | enst00000563630 | sg00000167962 | znf598-204 | 16 | 1997655 | 2009821 | - | mRNA | protein_coding |
| -226716 | enst00000652647 | sg00000167962 | znf598-210 | 16 | 1997654 | 2009814 | - | lnc_RNA | processed_transcript |
| -226735 | enst00000565396 | sg00000167962 | znf598-207 | 16 | 1997655 | 2009795 | - | lnc_RNA | retained_intron |
| -226766 | enst00000562988 | sg00000167962 | znf598-203 | 16 | 1997654 | 2009764 | - | lnc_RNA | retained_intron |
| -226766 | enst00000564824 | sg00000167962 | znf598-206 | 16 | 1999500 | 2009764 | - | lnc_RNA | retained_intron |
| 230073 | enst00000563775 | sg00000259895 | ac106820.2-201 | 16 | 2464950 | 2468213 | - | lnc_RNA | lncrna |
| 233157 | enst00000293973 | sg00000162068 | ntn3-201 | 16 | 2471297 | 2474145 | + | mRNA | protein_coding |
| -234185 | enst00000567625 | sg00000167962 | znf598-209 | 16 | 2000010 | 2002345 | - | mRNA | nonsense_mediated_decay |
| -234786 | enst00000561787 | sg00000167962 | znf598-201 | 16 | 1999894 | 2001744 | - | lnc_RNA | retained_intron |
| -236459 | enst00000564556 | sg00000167962 | znf598-205 | 16 | 1998424 | 2000071 | - | mRNA | nonsense_mediated_decay |
| 236911 | enst00000567020 | sg00000162065 | tbc1d24-204 | 16 | 2475051 | 2505734 | + | mRNA | protein_coding |
| 236978 | enst00000630263 | sg00000162065 | tbc1d24-207 | 16 | 2475118 | 2503286 | + | mRNA | nonsense_mediated_decay |
| 236987 | enst00000569874 | sg00000162065 | tbc1d24-205 | 16 | 2475127 | 2502855 | + | mRNA | nonsense_mediated_decay |
| 236987 | enst00000646147 | sg00000162065 | tbc1d24-210 | 16 | 2475127 | 2505730 | + | mRNA | protein_coding |
| -237335 | enst00000567008 | sg00000167962 | znf598-208 | 16 | 1998153 | 1999195 | - | lnc_RNA | retained_intron |
| 238418 | enst00000561847 | sg00000260293 | ac106820.4-201 | 16 | 2476558 | 2482173 | + | lnc_RNA | lncrna |
| -238876 | enst00000567515 | sg00000260107 | ac005606.1-201 | 16 | 1997654 | 1998374 | + | lnc_RNA | lncrna |
| -244067 | enst00000564642 | sg00000127561 | syngr3-204 | 16 | 1992463 | 1993298 | + | lnc_RNA | retained_intron |
| 244870 | enst00000566853 | sg00000162065 | tbc1d24-203 | 16 | 2483010 | 2485516 | + | lnc_RNA | processed_transcript |
| 244879 | enst00000562105 | sg00000162065 | tbc1d24-201 | 16 | 2483019 | 2500332 | + | mRNA | protein_coding |
| 244897 | enst00000643767 | sg00000162065 | tbc1d24-209 | 16 | 2483037 | 2500378 | + | mRNA | protein_coding |
| -245406 | enst00000562045 | sg00000127561 | syngr3-202 | 16 | 1991124 | 1993374 | + | mRNA | protein_coding |
| -246053 | enst00000654335 | sg00000261790 | ac005606.2-204 | 16 | 1986150 | 1990477 | - | lnc_RNA | lncrna |
| -246053 | enst00000654451 | sg00000261790 | ac005606.2-203 | 16 | 1984891 | 1990477 | - | lnc_RNA | lncrna |
| -246173 | enst00000565041 | sg00000261790 | ac005606.2-202 | 16 | 1986266 | 1990357 | - | lnc_RNA | lncrna |
| -246373 | enst00000568896 | sg00000127561 | syngr3-205 | 16 | 1990157 | 1992711 | + | mRNA | protein_coding |
| -246531 | enst00000618464 | sg00000127561 | syngr3-206 | 16 | 1989999 | 1994267 | + | mRNA | protein_coding |
| -246560 | enst00000248121 | sg00000127561 | syngr3-201 | 16 | 1989970 | 1994275 | + | mRNA | protein_coding |
| -246870 | enst00000563869 | sg00000127561 | syngr3-203 | 16 | 1989660 | 1993169 | + | mRNA | protein_coding |
| -249677 | enst00000564438 | sg00000261790 | ac005606.2-201 | 16 | 1984877 | 1986853 | - | lnc_RNA | lncrna |
| -251819 | enst00000567719 | sg00000127554 | gfer-204 | 16 | 1984711 | 1986115 | + | mRNA | protein_coding |
| -252198 | enst00000565658 | sg00000127554 | gfer-203 | 16 | 1984332 | 1986618 | + | lnc_RNA | retained_intron |
| -252272 | enst00000561710 | sg00000127554 | gfer-202 | 16 | 1984258 | 1985009 | + | mRNA | protein_coding |
| -252323 | enst00000569451 | sg00000127554 | gfer-205 | 16 | 1984207 | 1986112 | + | mRNA | protein_coding |
| -252337 | enst00000248114 | sg00000127554 | gfer-201 | 16 | 1984193 | 1987749 | + | mRNA | protein_coding |
| -252338 | enst00000567471 | sg00000196408 | noxo1-206 | 16 | 1980540 | 1984192 | - | mRNA | protein_coding |
| -254981 | enst00000354249 | sg00000196408 | noxo1-201 | 16 | 1978917 | 1981549 | - | mRNA | protein_coding |
| -255063 | enst00000356120 | sg00000196408 | noxo1-202 | 16 | 1978917 | 1981467 | - | mRNA | protein_coding |
| -255086 | enst00000563181 | sg00000196408 | noxo1-204 | 16 | 1980060 | 1981444 | - | lnc_RNA | retained_intron |
| -255347 | enst00000566005 | sg00000196408 | noxo1-205 | 16 | 1979040 | 1981183 | - | mRNA | protein_coding |
| -255347 | enst00000397280 | sg00000196408 | noxo1-203 | 16 | 1979040 | 1981183 | - | mRNA | protein_coding |
| 255457 | enst00000627285 | sg00000162065 | tbc1d24-206 | 16 | 2493597 | 2503453 | + | mRNA | protein_coding |
| -256886 | enst00000569739 | sg00000196408 | noxo1-207 | 16 | 1978917 | 1979644 | - | lnc_RNA | retained_intron |
| 257892 | enst00000564543 | sg00000260272 | ac093525.2-201 | 16 | 2496032 | 2520218 | + | mRNA | protein_coding |
| -259504 | enst00000567615 | sg00000183751 | tbl3-204 | 16 | 1977026 | 1978717 | + | lnc_RNA | retained_intron |
| 260182 | enst00000564879 | sg00000162065 | tbc1d24-202 | 16 | 2498322 | 2505733 | + | mRNA | nonsense_mediated_decay |
| -260461 | enst00000564171 | sg00000183751 | tbl3-203 | 16 | 1976069 | 1977672 | + | lnc_RNA | retained_intron |
| -260533 | enst00000569792 | sg00000183751 | tbl3-207 | 16 | 1975997 | 1977768 | + | lnc_RNA | retained_intron |
| -261951 | enst00000332704 | sg00000183751 | tbl3-201 | 16 | 1974579 | 1978684 | + | mRNA | protein_coding |
| -264421 | enst00000615855 | sg00000183751 | tbl3-208 | 16 | 1972109 | 1978683 | + | mRNA | protein_coding |
| -264444 | enst00000569628 | sg00000183751 | tbl3-206 | 16 | 1972086 | 1978684 | + | lnc_RNA | retained_intron |
| -264459 | enst00000561907 | sg00000183751 | tbl3-202 | 16 | 1972071 | 1974791 | + | mRNA | nonsense_mediated_decay |
| -264477 | enst00000568546 | sg00000183751 | tbl3-205 | 16 | 1972053 | 1982929 | + | mRNA | protein_coding |
| -264634 | enst00000618631 | sg00000277602 | ac005363.2-201 | 16 | 1971655 | 1971896 | - | lnc_RNA | lncrna |
| 266394 | enst00000636980 | sg00000162065 | tbc1d24-208 | 16 | 2504534 | 2509560 | + | lnc_RNA | processed_transcript |
| -269257 | enst00000321392 | sg00000179580 | rnf151-201 | 16 | 1967273 | 1968975 | + | mRNA | protein_coding |
| -269674 | enst00000569714 | sg00000179580 | rnf151-203 | 16 | 1966856 | 1968949 | + | mRNA | protein_coding |
| -269707 | enst00000569210 | sg00000179580 | rnf151-202 | 16 | 1966823 | 1968948 | + | mRNA | protein_coding |
| -271346 | enst00000459373 | sg00000273587 | snora78-201 | 16 | 1965184 | 1965310 | + | snoRNA | snorna |
| -271496 | enst00000564014 | sg00000255198 | snhg9-202 | 16 | 1965034 | 1965504 | + | lnc_RNA | lncrna |
| -271571 | enst00000531523 | sg00000255198 | snhg9-201 | 16 | 1964959 | 1965509 | + | lnc_RNA | lncrna |
| -271689 | enst00000563194 | sg00000140988 | rps2-217 | 16 | 1963212 | 1964841 | - | mRNA | protein_coding |
| -271704 | enst00000343262 | sg00000140988 | rps2-201 | 16 | 1962058 | 1964826 | - | mRNA | protein_coding |
| -271717 | enst00000533161 | sg00000140988 | rps2-213 | 16 | 1962061 | 1964813 | - | lnc_RNA | retained_intron |
| -271718 | enst00000529806 | sg00000140988 | rps2-209 | 16 | 1962079 | 1964812 | - | mRNA | protein_coding |
| -271724 | enst00000527302 | sg00000140988 | rps2-206 | 16 | 1962552 | 1964806 | - | mRNA | protein_coding |
| -271725 | enst00000527826 | sg00000140988 | rps2-207 | 16 | 1962950 | 1964805 | - | lnc_RNA | retained_intron |
| -271727 | enst00000526522 | sg00000140988 | rps2-202 | 16 | 1962060 | 1964803 | - | mRNA | protein_coding |
| -271899 | enst00000531065 | sg00000140988 | rps2-211 | 16 | 1962061 | 1964631 | - | lnc_RNA | retained_intron |
| -271899 | enst00000530225 | sg00000140988 | rps2-210 | 16 | 1962061 | 1964631 | - | mRNA | protein_coding |
| -271899 | enst00000527871 | sg00000140988 | rps2-208 | 16 | 1962061 | 1964631 | - | lnc_RNA | retained_intron |
| -271900 | enst00000527109 | sg00000140988 | rps2-205 | 16 | 1962061 | 1964630 | - | lnc_RNA | retained_intron |
| -271949 | enst00000533872 | sg00000140988 | rps2-215 | 16 | 1962061 | 1964581 | - | lnc_RNA | retained_intron |
| -271992 | enst00000526908 | sg00000140988 | rps2-204 | 16 | 1962643 | 1964538 | - | lnc_RNA | retained_intron |
| -272163 | enst00000532746 | sg00000140988 | rps2-212 | 16 | 1962061 | 1964367 | - | mRNA | nonsense_mediated_decay |
| -272165 | enst00000534461 | sg00000140988 | rps2-216 | 16 | 1962374 | 1964365 | - | lnc_RNA | retained_intron |
| -272174 | enst00000533186 | sg00000140988 | rps2-214 | 16 | 1962061 | 1964356 | - | mRNA | protein_coding |
| -272435 | enst00000530779 | sg00000255513 | ac005363.1-201 | 16 | 1963745 | 1964095 | - | pseudogenic_transcript | transcribed_processed_pseudogene |
| -273274 | enst00000526586 | sg00000140988 | rps2-203 | 16 | 1962061 | 1963256 | - | mRNA | protein_coding |
| -273424 | enst00000384674 | sg00000207405 | snora64-201 | 16 | 1962973 | 1963106 | - | snoRNA | snorna |
| -274064 | enst00000384084 | sg00000206811 | snora10-201 | 16 | 1962334 | 1962466 | - | snoRNA | snorna |
| 275812 | enst00000330398 | sg00000185883 | atp6v0c-201 | 16 | 2513952 | 2520218 | + | mRNA | protein_coding |
| 275825 | enst00000569317 | sg00000259784 | ac093525.1-201 | 16 | 2513965 | 2527955 | + | mRNA | protein_coding |
| 275836 | enst00000568562 | sg00000185883 | atp6v0c-204 | 16 | 2513976 | 2519679 | + | mRNA | protein_coding |
| 276154 | enst00000565223 | sg00000185883 | atp6v0c-203 | 16 | 2514294 | 2519920 | + | mRNA | protein_coding |
| -276972 | enst00000570172 | sg00000140990 | ndufb10-205 | 16 | 1959558 | 1961840 | + | mRNA | protein_coding |
| -276978 | enst00000569148 | sg00000140990 | ndufb10-204 | 16 | 1959552 | 1961975 | + | mRNA | protein_coding |
| -276986 | enst00000565031 | sg00000140990 | ndufb10-203 | 16 | 1959544 | 1961899 | + | lnc_RNA | retained_intron |
| -276987 | enst00000543683 | sg00000140990 | ndufb10-202 | 16 | 1959543 | 1961975 | + | mRNA | protein_coding |
| -276992 | enst00000268668 | sg00000140990 | ndufb10-201 | 16 | 1959538 | 1961975 | + | mRNA | protein_coding |
| 278518 | enst00000624099 | sg00000279520 | ac093525.8-201 | 16 | 2516658 | 2517999 | + | unconfirmed_transcript | tec |
| -278924 | enst00000565426 | sg00000140986 | rpl3l-202 | 16 | 1952954 | 1957606 | - | mRNA | protein_coding |
| -278933 | enst00000566484 | sg00000140986 | rpl3l-203 | 16 | 1954657 | 1957597 | - | lnc_RNA | processed_transcript |
| 280859 | enst00000564973 | sg00000185883 | atp6v0c-202 | 16 | 2518999 | 2520218 | + | mRNA | protein_coding |
| -281841 | enst00000268661 | sg00000140986 | rpl3l-201 | 16 | 1943974 | 1954689 | - | mRNA | protein_coding |
| 282217 | enst00000568263 | sg00000162066 | amdhd2-215 | 16 | 2520357 | 2530491 | + | mRNA | protein_coding |
| 282225 | enst00000302956 | sg00000162066 | amdhd2-202 | 16 | 2520365 | 2531422 | + | mRNA | protein_coding |
| 282225 | enst00000293971 | sg00000162066 | amdhd2-201 | 16 | 2520365 | 2529698 | + | mRNA | protein_coding |
| 282250 | enst00000565963 | sg00000162066 | amdhd2-211 | 16 | 2520390 | 2528054 | + | lnc_RNA | retained_intron |
| 282250 | enst00000413459 | sg00000162066 | amdhd2-203 | 16 | 2520390 | 2530954 | + | mRNA | protein_coding |
| 282253 | enst00000563633 | sg00000162066 | amdhd2-209 | 16 | 2520393 | 2529060 | + | mRNA | nonsense_mediated_decay |
| 282257 | enst00000648227 | sg00000162066 | amdhd2-219 | 16 | 2520397 | 2531230 | + | mRNA | protein_coding |
| 282261 | enst00000567475 | sg00000162066 | amdhd2-214 | 16 | 2520401 | 2528013 | + | lnc_RNA | retained_intron |
| 282263 | enst00000569219 | sg00000162066 | amdhd2-216 | 16 | 2520403 | 2527879 | + | lnc_RNA | retained_intron |
| 282281 | enst00000566706 | sg00000162066 | amdhd2-212 | 16 | 2520421 | 2529517 | + | mRNA | protein_coding |
| 282285 | enst00000569879 | sg00000162066 | amdhd2-217 | 16 | 2520425 | 2528692 | + | mRNA | protein_coding |
| 282296 | enst00000563556 | sg00000162066 | amdhd2-208 | 16 | 2520436 | 2527836 | + | mRNA | protein_coding |
| 288940 | enst00000565570 | sg00000162066 | amdhd2-210 | 16 | 2527080 | 2531422 | + | lnc_RNA | processed_transcript |
| 289430 | enst00000570028 | sg00000162066 | amdhd2-218 | 16 | 2527570 | 2528495 | + | lnc_RNA | retained_intron |
| 289739 | enst00000566947 | sg00000162066 | amdhd2-213 | 16 | 2527879 | 2528489 | + | lnc_RNA | retained_intron |
| 289769 | enst00000561487 | sg00000162066 | amdhd2-204 | 16 | 2527909 | 2528841 | + | lnc_RNA | retained_intron |
| 290212 | enst00000563444 | sg00000162066 | amdhd2-206 | 16 | 2528352 | 2529624 | + | lnc_RNA | retained_intron |
| 290306 | enst00000563145 | sg00000162066 | amdhd2-205 | 16 | 2528446 | 2529683 | + | lnc_RNA | retained_intron |
| 290563 | enst00000563453 | sg00000162066 | amdhd2-207 | 16 | 2528703 | 2529532 | + | lnc_RNA | retained_intron |
| -293204 | enst00000361871 | sg00000198736 | msrb1-201 | 16 | 1938210 | 1943326 | - | mRNA | protein_coding |
| -293237 | enst00000622125 | sg00000198736 | msrb1-206 | 16 | 1938234 | 1943293 | - | mRNA | protein_coding |
| 293268 | enst00000567119 | sg00000205923 | cemp1-202 | 16 | 2530035 | 2531408 | - | mRNA | protein_coding |
| 293277 | enst00000565480 | sg00000205923 | cemp1-201 | 16 | 2530316 | 2531417 | - | mRNA | protein_coding |
| -293331 | enst00000564908 | sg00000198736 | msrb1-205 | 16 | 1939095 | 1943199 | - | mRNA | protein_coding |
| -293335 | enst00000399753 | sg00000198736 | msrb1-202 | 16 | 1939019 | 1943195 | - | mRNA | protein_coding |
| -293407 | enst00000473663 | sg00000198736 | msrb1-203 | 16 | 1938942 | 1943123 | - | mRNA | protein_coding |
| 293865 | enst00000581887 | sg00000266232 | mir3178-201 | 16 | 2531922 | 2532005 | - | miRNA | mirna |
| -294591 | enst00000489198 | sg00000198736 | msrb1-204 | 16 | 1940978 | 1941939 | - | lnc_RNA | processed_transcript |
| 299839 | enst00000566659 | sg00000140992 | pdpk1-215 | 16 | 2537979 | 2581661 | + | mRNA | protein_coding |
| 299857 | enst00000441549 | sg00000140992 | pdpk1-204 | 16 | 2537997 | 2597920 | + | mRNA | protein_coding |
| 299863 | enst00000268673 | sg00000140992 | pdpk1-201 | 16 | 2538003 | 2601095 | + | mRNA | protein_coding |
| 299865 | enst00000462923 | sg00000140992 | pdpk1-207 | 16 | 2538005 | 2539521 | + | lnc_RNA | processed_transcript |
| 299880 | enst00000474706 | sg00000140992 | pdpk1-210 | 16 | 2538020 | 2561530 | + | mRNA | nonsense_mediated_decay |
| 299881 | enst00000492021 | sg00000140992 | pdpk1-213 | 16 | 2538021 | 2561501 | + | mRNA | nonsense_mediated_decay |
| 299881 | enst00000570136 | sg00000140992 | pdpk1-217 | 16 | 2538021 | 2562227 | + | lnc_RNA | retained_intron |
| 299881 | enst00000342085 | sg00000140992 | pdpk1-202 | 16 | 2538021 | 2603188 | + | mRNA | protein_coding |
| 300024 | enst00000389224 | sg00000140992 | pdpk1-203 | 16 | 2538164 | 2597928 | + | mRNA | protein_coding |
| 312463 | enst00000461815 | sg00000140992 | pdpk1-206 | 16 | 2550603 | 2565614 | + | mRNA | protein_coding |
| 316835 | enst00000569220 | sg00000261288 | ac093525.5-201 | 16 | 2554975 | 2556105 | + | lnc_RNA | lncrna |
| 317920 | enst00000563449 | sg00000261613 | ac093525.6-201 | 16 | 2554060 | 2556060 | - | lnc_RNA | lncrna |
| -318115 | enst00000454677 | sg00000162040 | hs3st6-201 | 16 | 1911475 | 1918415 | - | mRNA | protein_coding |
| 318756 | enst00000491073 | sg00000140992 | pdpk1-212 | 16 | 2556896 | 2584064 | + | lnc_RNA | retained_intron |
| 319304 | enst00000460496 | sg00000140992 | pdpk1-205 | 16 | 2557444 | 2561879 | + | lnc_RNA | processed_transcript |
| 326956 | enst00000569852 | sg00000269937 | ac093525.7-201 | 16 | 2561471 | 2565096 | - | lnc_RNA | lncrna |
| 327413 | enst00000464702 | sg00000140992 | pdpk1-208 | 16 | 2565553 | 2571341 | + | lnc_RNA | processed_transcript |
| 327466 | enst00000471311 | sg00000140992 | pdpk1-209 | 16 | 2565606 | 2570818 | + | lnc_RNA | processed_transcript |
| 333796 | enst00000562232 | sg00000261140 | ac093525.4-201 | 16 | 2569043 | 2571936 | - | lnc_RNA | lncrna |
| 334213 | enst00000568040 | sg00000260436 | ac093525.3-201 | 16 | 2571570 | 2572353 | - | lnc_RNA | lncrna |
| 339233 | enst00000624961 | sg00000279568 | ac093525.9-201 | 16 | 2575628 | 2577373 | - | unconfirmed_transcript | tec |
| 340255 | enst00000625130 | sg00000280402 | ac093525.10-201 | 16 | 2578395 | 2579963 | + | unconfirmed_transcript | tec |
| 343207 | enst00000478708 | sg00000140992 | pdpk1-211 | 16 | 2581347 | 2583987 | + | mRNA | nonsense_mediated_decay |
| -347416 | enst00000570087 | sg00000259947 | linc02124-201 | 16 | 1889114 | 1890434 | + | lnc_RNA | lncrna |
| -352236 | enst00000470044 | sg00000162039 | meiob-204 | 16 | 1833987 | 1884294 | - | mRNA | protein_coding |
| -352297 | enst00000633813 | sg00000281219 | linc00254-202 | 16 | 1878559 | 1884233 | - | lnc_RNA | lncrna |
| -352299 | enst00000563416 | sg00000281219 | linc00254-201 | 16 | 1878285 | 1884231 | - | lnc_RNA | lncrna |
| 354374 | enst00000624546 | sg00000279162 | ac141586.5-201 | 16 | 2592514 | 2594563 | + | unconfirmed_transcript | tec |
| 360107 | enst00000569721 | sg00000140992 | pdpk1-216 | 16 | 2598247 | 2598638 | + | lnc_RNA | processed_transcript |
| 361301 | enst00000561962 | sg00000140992 | pdpk1-214 | 16 | 2599441 | 2601630 | + | lnc_RNA | processed_transcript |
| 361578 | enst00000562166 | sg00000261093 | ac141586.3-201 | 16 | 2597881 | 2599718 | - | lnc_RNA | lncrna |
| -364352 | enst00000397344 | sg00000162039 | meiob-202 | 16 | 1833988 | 1872178 | - | mRNA | protein_coding |
| -364386 | enst00000496541 | sg00000162039 | meiob-206 | 16 | 1844960 | 1872144 | - | mRNA | protein_coding |
| -364435 | enst00000460494 | sg00000162039 | meiob-203 | 16 | 1857712 | 1872095 | - | mRNA | nonsense_mediated_decay |
| 365210 | enst00000399702 | sg00000215154 | ac141586.1-201 | 16 | 2603350 | 2630494 | + | lnc_RNA | processed_transcript |
| 365280 | enst00000566272 | sg00000215154 | ac141586.1-202 | 16 | 2603420 | 2614068 | + | lnc_RNA | processed_transcript |
| 365334 | enst00000567242 | sg00000215154 | ac141586.1-203 | 16 | 2603474 | 2614071 | + | pseudogenic_transcript | transcribed_unprocessed_pseudogene |
| -368345 | enst00000325962 | sg00000162039 | meiob-201 | 16 | 1833988 | 1868185 | - | mRNA | protein_coding |
| 383654 | enst00000624558 | sg00000279057 | ac141586.4-201 | 16 | 2620222 | 2621794 | - | unconfirmed_transcript | tec |
| -392983 | enst00000570247 | sg00000260541 | al031722.1-201 | 16 | 1841020 | 1843547 | - | lnc_RNA | lncrna |
| -394623 | enst00000490154 | sg00000162039 | meiob-205 | 16 | 1837684 | 1841907 | - | lnc_RNA | retained_intron |
| 400581 | enst00000571865 | sg00000205918 | pdpk2p-203 | 16 | 2633898 | 2638721 | - | lnc_RNA | processed_transcript |
| 404292 | enst00000562415 | sg00000205918 | pdpk2p-202 | 16 | 2616453 | 2642432 | - | pseudogenic_transcript | transcribed_unprocessed_pseudogene |
| 405156 | enst00000382326 | sg00000205918 | pdpk2p-201 | 16 | 2616121 | 2643296 | - | lnc_RNA | processed_transcript |
| 407074 | enst00000565111 | sg00000260176 | ac141586.2-201 | 16 | 2644084 | 2645214 | - | lnc_RNA | lncrna |
| -409310 | enst00000615972 | sg00000180185 | fahd1-204 | 16 | 1827220 | 1838126 | + | mRNA | protein_coding |
| -409373 | enst00000566709 | sg00000063854 | hagh-208 | 16 | 1809124 | 1827157 | - | mRNA | protein_coding |
| -409563 | enst00000382666 | sg00000180185 | fahd1-201 | 16 | 1826967 | 1840207 | + | mRNA | protein_coding |
| -409563 | enst00000382668 | sg00000180185 | fahd1-202 | 16 | 1826967 | 1840207 | + | mRNA | protein_coding |
| -409589 | enst00000427358 | sg00000180185 | fahd1-203 | 16 | 1826941 | 1828914 | + | mRNA | protein_coding |
| -409689 | enst00000397353 | sg00000063854 | hagh-201 | 16 | 1809103 | 1826841 | - | mRNA | protein_coding |
| -409696 | enst00000455446 | sg00000063854 | hagh-203 | 16 | 1808872 | 1826834 | - | mRNA | protein_coding |
| -409698 | enst00000565097 | sg00000063854 | hagh-206 | 16 | 1821512 | 1826832 | - | lnc_RNA | retained_intron |
| -409705 | enst00000397356 | sg00000063854 | hagh-202 | 16 | 1807629 | 1826825 | - | mRNA | protein_coding |
| -409723 | enst00000564518 | sg00000063854 | hagh-205 | 16 | 1819836 | 1826807 | - | lnc_RNA | retained_intron |
| -409728 | enst00000569700 | sg00000063854 | hagh-212 | 16 | 1818515 | 1826802 | - | lnc_RNA | retained_intron |
| -409752 | enst00000569339 | sg00000063854 | hagh-211 | 16 | 1817189 | 1826778 | - | mRNA | protein_coding |
| -409970 | enst00000567190 | sg00000063854 | hagh-209 | 16 | 1819835 | 1826560 | - | lnc_RNA | retained_intron |
| -413626 | enst00000564445 | sg00000063854 | hagh-204 | 16 | 1795620 | 1822904 | - | mRNA | protein_coding |
| -419623 | enst00000566644 | sg00000063854 | hagh-207 | 16 | 1807577 | 1816907 | - | mRNA | protein_coding |
| -424111 | enst00000567398 | sg00000063854 | hagh-210 | 16 | 1809105 | 1812419 | - | lnc_RNA | processed_transcript |
| 427210 | enst00000619862 | sg00000260565 | ervk13-1-208 | 16 | 2660350 | 2665350 | - | lnc_RNA | retained_intron |
| 433265 | enst00000568970 | sg00000260565 | ervk13-1-206 | 16 | 2667975 | 2671405 | - | lnc_RNA | lncrna |
| 433785 | enst00000655820 | sg00000260565 | ervk13-1-212 | 16 | 2660351 | 2671925 | - | lnc_RNA | lncrna |
| 434078 | enst00000662175 | sg00000260565 | ervk13-1-225 | 16 | 2660353 | 2672218 | - | lnc_RNA | lncrna |
| 434133 | enst00000657292 | sg00000260565 | ervk13-1-214 | 16 | 2663131 | 2672273 | - | lnc_RNA | lncrna |
| 434133 | enst00000562807 | sg00000260565 | ervk13-1-201 | 16 | 2661206 | 2672273 | - | lnc_RNA | lncrna |
| 434133 | enst00000671475 | sg00000260565 | ervk13-1-243 | 16 | 2661155 | 2672273 | - | lnc_RNA | lncrna |
| 434133 | enst00000666266 | sg00000260565 | ervk13-1-233 | 16 | 2661153 | 2672273 | - | lnc_RNA | lncrna |
| 434133 | enst00000668680 | sg00000260565 | ervk13-1-238 | 16 | 2661152 | 2672273 | - | lnc_RNA | lncrna |
| 434133 | enst00000671507 | sg00000260565 | ervk13-1-244 | 16 | 2661148 | 2672273 | - | lnc_RNA | lncrna |
| 434133 | enst00000658381 | sg00000260565 | ervk13-1-217 | 16 | 2660352 | 2672273 | - | lnc_RNA | lncrna |
| 434133 | enst00000566343 | sg00000260565 | ervk13-1-204 | 16 | 2663322 | 2672273 | - | lnc_RNA | lncrna |
| 434133 | enst00000662943 | sg00000260565 | ervk13-1-227 | 16 | 2662670 | 2672273 | - | lnc_RNA | lncrna |
| 434665 | enst00000659184 | sg00000260565 | ervk13-1-219 | 16 | 2660396 | 2672805 | - | lnc_RNA | lncrna |
| 435240 | enst00000654949 | sg00000260565 | ervk13-1-211 | 16 | 2660363 | 2673380 | - | lnc_RNA | lncrna |
| 435247 | enst00000666404 | sg00000260565 | ervk13-1-234 | 16 | 2660382 | 2673387 | - | lnc_RNA | lncrna |
| 435255 | enst00000564340 | sg00000260565 | ervk13-1-203 | 16 | 2660348 | 2673395 | - | lnc_RNA | lncrna |
| 435258 | enst00000653956 | sg00000260565 | ervk13-1-209 | 16 | 2661195 | 2673398 | - | lnc_RNA | lncrna |
| 435258 | enst00000657811 | sg00000260565 | ervk13-1-216 | 16 | 2660699 | 2673398 | - | lnc_RNA | lncrna |
| 435273 | enst00000657531 | sg00000260565 | ervk13-1-215 | 16 | 2660364 | 2673413 | - | lnc_RNA | lncrna |
| 435273 | enst00000656684 | sg00000260565 | ervk13-1-213 | 16 | 2660361 | 2673413 | - | lnc_RNA | lncrna |
| 435273 | enst00000669151 | sg00000260565 | ervk13-1-239 | 16 | 2660594 | 2673413 | - | lnc_RNA | lncrna |
| 435275 | enst00000569465 | sg00000260565 | ervk13-1-207 | 16 | 2661196 | 2673415 | - | lnc_RNA | lncrna |
| 435279 | enst00000659274 | sg00000260565 | ervk13-1-220 | 16 | 2660442 | 2673419 | - | lnc_RNA | lncrna |
| 435279 | enst00000670385 | sg00000260565 | ervk13-1-241 | 16 | 2660363 | 2673419 | - | lnc_RNA | lncrna |
| 435279 | enst00000662929 | sg00000260565 | ervk13-1-226 | 16 | 2660363 | 2673419 | - | lnc_RNA | lncrna |
| 435279 | enst00000665678 | sg00000260565 | ervk13-1-231 | 16 | 2661226 | 2673419 | - | lnc_RNA | lncrna |
| 435279 | enst00000667109 | sg00000260565 | ervk13-1-236 | 16 | 2661206 | 2673419 | - | lnc_RNA | lncrna |
| 435279 | enst00000661984 | sg00000260565 | ervk13-1-224 | 16 | 2660351 | 2673419 | - | lnc_RNA | lncrna |
| 435281 | enst00000671018 | sg00000260565 | ervk13-1-242 | 16 | 2667088 | 2673421 | - | lnc_RNA | lncrna |
| 435287 | enst00000667008 | sg00000260565 | ervk13-1-235 | 16 | 2660362 | 2673427 | - | lnc_RNA | lncrna |
| 435294 | enst00000660569 | sg00000260565 | ervk13-1-221 | 16 | 2660362 | 2673434 | - | lnc_RNA | lncrna |
| 435296 | enst00000654702 | sg00000260565 | ervk13-1-210 | 16 | 2660363 | 2673436 | - | lnc_RNA | lncrna |
| 435296 | enst00000665388 | sg00000260565 | ervk13-1-230 | 16 | 2660356 | 2673436 | - | lnc_RNA | lncrna |
| 435300 | enst00000669589 | sg00000260565 | ervk13-1-240 | 16 | 2660362 | 2673440 | - | lnc_RNA | lncrna |
| 435301 | enst00000568395 | sg00000260565 | ervk13-1-205 | 16 | 2660361 | 2673441 | - | lnc_RNA | lncrna |
| 435301 | enst00000658483 | sg00000260565 | ervk13-1-218 | 16 | 2660368 | 2673441 | - | lnc_RNA | lncrna |
| 435304 | enst00000564160 | sg00000260565 | ervk13-1-202 | 16 | 2672326 | 2673444 | - | lnc_RNA | lncrna |
| 435305 | enst00000661380 | sg00000260565 | ervk13-1-222 | 16 | 2660363 | 2673445 | - | lnc_RNA | lncrna |
| 435305 | enst00000661849 | sg00000260565 | ervk13-1-223 | 16 | 2660368 | 2673445 | - | lnc_RNA | lncrna |
| -441559 | enst00000568221 | sg00000099769 | igfals-203 | 16 | 1791805 | 1794971 | - | mRNA | protein_coding |
| -442767 | enst00000215539 | sg00000099769 | igfals-201 | 16 | 1790413 | 1793763 | - | mRNA | protein_coding |
| -442798 | enst00000415638 | sg00000099769 | igfals-202 | 16 | 1790476 | 1793732 | - | mRNA | protein_coding |
| -442830 | enst00000569769 | sg00000162032 | spsb3-212 | 16 | 1778037 | 1793700 | - | mRNA | protein_coding |
| 444121 | enst00000668411 | sg00000260565 | ervk13-1-237 | 16 | 2660480 | 2682261 | - | lnc_RNA | lncrna |
| 444229 | enst00000663379 | sg00000260565 | ervk13-1-228 | 16 | 2660349 | 2682369 | - | lnc_RNA | lncrna |
| 444238 | enst00000665778 | sg00000260565 | ervk13-1-232 | 16 | 2661193 | 2682378 | - | lnc_RNA | lncrna |
| 444239 | enst00000663519 | sg00000260565 | ervk13-1-229 | 16 | 2660362 | 2682379 | - | lnc_RNA | lncrna |
| 444383 | enst00000301738 | sg00000167977 | kctd5-201 | 16 | 2682523 | 2709030 | + | mRNA | protein_coding |
| 444388 | enst00000570005 | sg00000167977 | kctd5-205 | 16 | 2682528 | 2697279 | + | lnc_RNA | processed_transcript |
| 444393 | enst00000564246 | sg00000167977 | kctd5-203 | 16 | 2682533 | 2699302 | + | lnc_RNA | processed_transcript |
| 444400 | enst00000564195 | sg00000167977 | kctd5-202 | 16 | 2682540 | 2707479 | + | mRNA | protein_coding |
| 444966 | enst00000623937 | sg00000279901 | ac092117.2-201 | 16 | 2683106 | 2684764 | + | unconfirmed_transcript | tec |
| 447474 | enst00000569689 | sg00000167977 | kctd5-204 | 16 | 2685614 | 2696032 | + | lnc_RNA | processed_transcript |
| -451819 | enst00000563821 | sg00000095906 | nubp2-204 | 16 | 1784711 | 1786945 | + | lnc_RNA | retained_intron |
| -452070 | enst00000568610 | sg00000095906 | nubp2-213 | 16 | 1784460 | 1786130 | + | lnc_RNA | processed_transcript |
| -452520 | enst00000568706 | sg00000095906 | nubp2-214 | 16 | 1784010 | 1788969 | + | mRNA | protein_coding |
| -452677 | enst00000562263 | sg00000095906 | nubp2-202 | 16 | 1783853 | 1788150 | + | mRNA | protein_coding |
| -453507 | enst00000564227 | sg00000095906 | nubp2-205 | 16 | 1783023 | 1787777 | + | mRNA | nonsense_mediated_decay |
| -453523 | enst00000565134 | sg00000095906 | nubp2-206 | 16 | 1783007 | 1788613 | + | mRNA | protein_coding |
| -453531 | enst00000569898 | sg00000095906 | nubp2-216 | 16 | 1782999 | 1788680 | + | mRNA | nonsense_mediated_decay |
| -453534 | enst00000565603 | sg00000095906 | nubp2-207 | 16 | 1782996 | 1788767 | + | lnc_RNA | retained_intron |
| -453535 | enst00000568287 | sg00000095906 | nubp2-212 | 16 | 1782995 | 1788000 | + | mRNA | protein_coding |
| -453540 | enst00000565987 | sg00000095906 | nubp2-208 | 16 | 1782990 | 1788726 | + | mRNA | protein_coding |
| -453562 | enst00000563136 | sg00000095906 | nubp2-203 | 16 | 1782968 | 1787740 | + | mRNA | protein_coding |
| -453570 | enst00000262302 | sg00000095906 | nubp2-201 | 16 | 1782960 | 1789186 | + | mRNA | protein_coding |
| -453574 | enst00000566090 | sg00000095906 | nubp2-209 | 16 | 1782956 | 1787264 | + | lnc_RNA | retained_intron |
| -453598 | enst00000567700 | sg00000095906 | nubp2-211 | 16 | 1782932 | 1789183 | + | lnc_RNA | retained_intron |
| -453598 | enst00000568834 | sg00000095906 | nubp2-215 | 16 | 1782932 | 1789181 | + | mRNA | nonsense_mediated_decay |
| -453598 | enst00000566447 | sg00000095906 | nubp2-210 | 16 | 1782932 | 1787024 | + | lnc_RNA | retained_intron |
| -453776 | enst00000564070 | sg00000162032 | spsb3-205 | 16 | 1778170 | 1782754 | - | lnc_RNA | retained_intron |
| -453936 | enst00000563741 | sg00000162032 | spsb3-204 | 16 | 1776722 | 1782594 | - | lnc_RNA | retained_intron |
| -453959 | enst00000566339 | sg00000162032 | spsb3-208 | 16 | 1776712 | 1782571 | - | mRNA | protein_coding |
| -453963 | enst00000568416 | sg00000162032 | spsb3-210 | 16 | 1781042 | 1782567 | - | lnc_RNA | retained_intron |
| -453973 | enst00000567868 | sg00000162032 | spsb3-209 | 16 | 1776718 | 1782557 | - | lnc_RNA | retained_intron |
| -453978 | enst00000569380 | sg00000162032 | spsb3-211 | 16 | 1776718 | 1782552 | - | lnc_RNA | retained_intron |
| -453983 | enst00000565550 | sg00000162032 | spsb3-207 | 16 | 1778064 | 1782547 | - | lnc_RNA | retained_intron |
| -454025 | enst00000564709 | sg00000162032 | spsb3-206 | 16 | 1776714 | 1782505 | - | lnc_RNA | retained_intron |
| -454625 | enst00000563705 | sg00000162032 | spsb3-203 | 16 | 1777857 | 1781905 | - | lnc_RNA | retained_intron |
| -455014 | enst00000301717 | sg00000162032 | spsb3-201 | 16 | 1776749 | 1781516 | - | mRNA | protein_coding |
| -455021 | enst00000563668 | sg00000162032 | spsb3-202 | 16 | 1776795 | 1781509 | - | lnc_RNA | retained_intron |
| -460718 | enst00000564182 | sg00000197774 | eme2-203 | 16 | 1775812 | 1776962 | + | mRNA | nonsense_mediated_decay |
| -461215 | enst00000561903 | sg00000197774 | eme2-202 | 16 | 1775315 | 1781708 | + | mRNA | nonsense_mediated_decay |
| -461321 | enst00000565326 | sg00000197774 | eme2-204 | 16 | 1775209 | 1775914 | + | lnc_RNA | retained_intron |
| -461585 | enst00000561564 | sg00000197774 | eme2-201 | 16 | 1774945 | 1775878 | + | lnc_RNA | retained_intron |
| -463204 | enst00000570069 | sg00000197774 | eme2-206 | 16 | 1773326 | 1780627 | + | lnc_RNA | retained_intron |
| -463375 | enst00000397375 | sg00000074071 | mrps34-202 | 16 | 1771890 | 1773155 | - | mRNA | protein_coding |
| -463380 | enst00000177742 | sg00000074071 | mrps34-201 | 16 | 1771890 | 1773150 | - | mRNA | protein_coding |
| -463720 | enst00000568449 | sg00000197774 | eme2-205 | 16 | 1772810 | 1780635 | + | mRNA | protein_coding |
| -463832 | enst00000569585 | sg00000074071 | mrps34-203 | 16 | 1771896 | 1772698 | - | lnc_RNA | retained_intron |
| -464800 | enst00000219302 | sg00000103024 | nme3-201 | 16 | 1770286 | 1771730 | - | mRNA | protein_coding |
| -464969 | enst00000563498 | sg00000103024 | nme3-204 | 16 | 1770344 | 1771561 | - | mRNA | protein_coding |
| -464973 | enst00000566600 | sg00000103024 | nme3-209 | 16 | 1770377 | 1771557 | - | lnc_RNA | retained_intron |
| -464987 | enst00000563367 | sg00000103024 | nme3-203 | 16 | 1770461 | 1771543 | - | lnc_RNA | retained_intron |
| -464992 | enst00000561637 | sg00000103024 | nme3-202 | 16 | 1770335 | 1771538 | - | lnc_RNA | retained_intron |
| -465017 | enst00000565379 | sg00000103024 | nme3-208 | 16 | 1770481 | 1771513 | - | lnc_RNA | retained_intron |
| -465017 | enst00000563854 | sg00000103024 | nme3-205 | 16 | 1770542 | 1771513 | - | mRNA | nonsense_mediated_decay |
| -465020 | enst00000568561 | sg00000103024 | nme3-211 | 16 | 1770342 | 1771510 | - | mRNA | nonsense_mediated_decay |
| -465035 | enst00000564628 | sg00000103024 | nme3-207 | 16 | 1770320 | 1771495 | - | mRNA | protein_coding |
| -465207 | enst00000564252 | sg00000103024 | nme3-206 | 16 | 1770649 | 1771323 | - | lnc_RNA | retained_intron |
| -465324 | enst00000567271 | sg00000103024 | nme3-210 | 16 | 1770341 | 1771206 | - | lnc_RNA | retained_intron |
| -468573 | enst00000563868 | sg00000138834 | mapk8ip3-206 | 16 | 1767957 | 1769020 | + | lnc_RNA | retained_intron |
| -469263 | enst00000566064 | sg00000138834 | mapk8ip3-209 | 16 | 1767267 | 1767846 | + | lnc_RNA | retained_intron |
| -469372 | enst00000564868 | sg00000138834 | mapk8ip3-208 | 16 | 1767158 | 1768551 | + | lnc_RNA | retained_intron |
| -469696 | enst00000562042 | sg00000138834 | mapk8ip3-205 | 16 | 1766834 | 1767340 | + | lnc_RNA | retained_intron |
| -470358 | enst00000567352 | sg00000138834 | mapk8ip3-211 | 16 | 1766172 | 1766971 | + | lnc_RNA | retained_intron |
| -472608 | enst00000561949 | sg00000138834 | mapk8ip3-204 | 16 | 1763922 | 1765053 | + | lnc_RNA | retained_intron |
| -473637 | enst00000570131 | sg00000138834 | mapk8ip3-215 | 16 | 1762893 | 1763896 | + | lnc_RNA | retained_intron |
| -476579 | enst00000566589 | sg00000138834 | mapk8ip3-210 | 16 | 1759951 | 1764318 | + | lnc_RNA | retained_intron |
| 477425 | enst00000543965 | sg00000172382 | prss27-202 | 16 | 2712419 | 2715565 | - | lnc_RNA | retained_intron |
| 480384 | enst00000566492 | sg00000172382 | prss27-205 | 16 | 2714946 | 2718524 | - | lnc_RNA | retained_intron |
| 482084 | enst00000302641 | sg00000172382 | prss27-201 | 16 | 2712422 | 2720224 | - | mRNA | protein_coding |
| 482411 | enst00000565903 | sg00000172382 | prss27-204 | 16 | 2712424 | 2720551 | - | mRNA | nonsense_mediated_decay |
| 482411 | enst00000562249 | sg00000172382 | prss27-203 | 16 | 2713072 | 2720551 | - | mRNA | nonsense_mediated_decay |
| -484268 | enst00000569670 | sg00000261207 | al031717.1-201 | 16 | 1751559 | 1752262 | - | lnc_RNA | lncrna |
| -489462 | enst00000567849 | sg00000138834 | mapk8ip3-212 | 16 | 1747068 | 1760343 | + | mRNA | nonsense_mediated_decay |
| -489462 | enst00000568774 | sg00000138834 | mapk8ip3-214 | 16 | 1747068 | 1748800 | + | lnc_RNA | retained_intron |
| -492491 | enst00000568271 | sg00000138834 | mapk8ip3-213 | 16 | 1744039 | 1748726 | + | lnc_RNA | processed_transcript |
Source file: /hps/research1/birney/users/adrien/analyses/cancer_DNA_promethion/run_1_2_3_4/DNA_pipeline_2/results/methylation/pycometh_meth_comp_CGI_3/out.tsv.gz
MD5 hash: 9aa0e3f69cb4e12345c3758eb68a5efc