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CpG interval report generated on 20/05/20 with pycoMeth 0.4.6
Interval details
| pvalue rank | chromosome | start | end | length | number of samples | number of CpGs | pvalue | adjusted pvalue |
|---|---|---|---|---|---|---|---|---|
| #74 | 19 | 58355910 | 58357548 | 1638 | 3 | 49 | 1.68317e-19 | 2.26204e-17 |
Methylation log-likelihood ratio by CpG position
Distribution of CpG methylation log-likelihood ratio by sample
Closest transcripts TSS
| distance to tss | transcript id | gene id | transcript name | chromosome | start | end | strand | feature type | transcript biotype |
|---|---|---|---|---|---|---|---|---|---|
| 0 | enst00000596636 | sg00000268230 | ac012313.3-203 | 19 | 58353021 | 58356083 | - | lnc_RNA | lncrna |
| 0 | enst00000600123 | sg00000268230 | ac012313.3-201 | 19 | 58346854 | 58356225 | - | lnc_RNA | lncrna |
| 451 | enst00000599952 | sg00000268049 | ac012313.2-201 | 19 | 58357999 | 58359603 | + | lnc_RNA | lncrna |
| -2418 | enst00000263100 | sg00000121410 | a1bg-201 | 19 | 58345183 | 58353492 | - | mRNA | protein_coding |
| -2419 | enst00000595014 | sg00000121410 | a1bg-202 | 19 | 58346858 | 58353491 | - | lnc_RNA | retained_intron |
| -2781 | enst00000600966 | sg00000121410 | a1bg-205 | 19 | 58350594 | 58353129 | - | mRNA | protein_coding |
| -3920 | enst00000670199 | sg00000268895 | a1bg-as1-208 | 19 | 58351990 | 58355151 | + | lnc_RNA | lncrna |
| -3940 | enst00000595302 | sg00000268895 | a1bg-as1-204 | 19 | 58351970 | 58355183 | + | lnc_RNA | lncrna |
| 5035 | enst00000599889 | sg00000269054 | ac012313.6-201 | 19 | 58362583 | 58367535 | + | lnc_RNA | lncrna |
| 5060 | enst00000663335 | sg00000269054 | ac012313.6-202 | 19 | 58362608 | 58367593 | + | lnc_RNA | lncrna |
| -5115 | enst00000623509 | sg00000279611 | ac012313.10-201 | 19 | 58350795 | 58351720 | + | unconfirmed_transcript | tec |
| 5203 | enst00000311044 | sg00000174586 | znf497-201 | 19 | 58354357 | 58362751 | - | mRNA | protein_coding |
| 5203 | enst00000599109 | sg00000268230 | ac012313.3-202 | 19 | 58348466 | 58362751 | - | lnc_RNA | lncrna |
| 5277 | enst00000595763 | sg00000174586 | znf497-203 | 19 | 58357439 | 58362825 | - | mRNA | protein_coding |
| 5300 | enst00000425453 | sg00000174586 | znf497-202 | 19 | 58355561 | 58362848 | - | mRNA | protein_coding |
| 5890 | enst00000516402 | sg00000252211 | rna5sp473-201 | 19 | 58363438 | 58363562 | + | pseudogenic_transcript | rrna_pseudogene |
| -8121 | enst00000600686 | sg00000268895 | a1bg-as1-207 | 19 | 58347789 | 58354713 | + | lnc_RNA | lncrna |
| -8123 | enst00000600379 | sg00000268895 | a1bg-as1-206 | 19 | 58347787 | 58354724 | + | lnc_RNA | lncrna |
| -8157 | enst00000593960 | sg00000268895 | a1bg-as1-202 | 19 | 58347753 | 58354502 | + | lnc_RNA | lncrna |
| -8157 | enst00000599728 | sg00000268895 | a1bg-as1-205 | 19 | 58347753 | 58354039 | + | lnc_RNA | lncrna |
| -8158 | enst00000593374 | sg00000268895 | a1bg-as1-201 | 19 | 58347752 | 58354425 | + | lnc_RNA | lncrna |
| -8159 | enst00000594950 | sg00000268895 | a1bg-as1-203 | 19 | 58347751 | 58355183 | + | lnc_RNA | lncrna |
| -8192 | enst00000670460 | sg00000268895 | a1bg-as1-209 | 19 | 58347718 | 58355455 | + | lnc_RNA | lncrna |
| -8253 | enst00000598345 | sg00000121410 | a1bg-204 | 19 | 58346860 | 58347657 | - | lnc_RNA | retained_intron |
| -8276 | enst00000596924 | sg00000121410 | a1bg-203 | 19 | 58345178 | 58347634 | - | lnc_RNA | processed_transcript |
| -21222 | enst00000622141 | sg00000277588 | mir6806-201 | 19 | 58334688 | 58334751 | + | miRNA | mirna |
| 23474 | enst00000427624 | sg00000152475 | znf837-201 | 19 | 58367618 | 58381022 | - | mRNA | protein_coding |
| 23482 | enst00000597582 | sg00000152475 | znf837-202 | 19 | 58367623 | 58381030 | - | mRNA | protein_coding |
| -28662 | enst00000669440 | sg00000283103 | ac010642.2-203 | 19 | 58314780 | 58327248 | - | lnc_RNA | lncrna |
| 28852 | enst00000601521 | sg00000083845 | rps5-209 | 19 | 58386400 | 58394806 | + | mRNA | protein_coding |
| -28916 | enst00000329665 | sg00000182318 | zscan22-201 | 19 | 58326994 | 58342332 | + | mRNA | protein_coding |
| -28943 | enst00000666049 | sg00000283103 | ac010642.2-204 | 19 | 58314788 | 58326967 | - | lnc_RNA | lncrna |
| 28959 | enst00000596314 | sg00000083845 | rps5-203 | 19 | 58386507 | 58394736 | + | mRNA | protein_coding |
| -28968 | enst00000664481 | sg00000283103 | ac010642.2-205 | 19 | 58309727 | 58326942 | - | lnc_RNA | lncrna |
| -28975 | enst00000669883 | sg00000283103 | ac010642.2-209 | 19 | 58310399 | 58326935 | - | lnc_RNA | lncrna |
| -28975 | enst00000651375 | sg00000283103 | ac010642.2-201 | 19 | 58310432 | 58326935 | - | lnc_RNA | lncrna |
| -28975 | enst00000634676 | sg00000283103 | ac010642.2-202 | 19 | 58310352 | 58326935 | - | lnc_RNA | lncrna |
| -28975 | enst00000659246 | sg00000283103 | ac010642.2-206 | 19 | 58310352 | 58326935 | - | lnc_RNA | lncrna |
| -28996 | enst00000671228 | sg00000283103 | ac010642.2-207 | 19 | 58310363 | 58326914 | - | lnc_RNA | lncrna |
| -29051 | enst00000658331 | sg00000283103 | ac010642.2-208 | 19 | 58310367 | 58326859 | - | lnc_RNA | lncrna |
| 29310 | enst00000582477 | sg00000266640 | mir4754-201 | 19 | 58386770 | 58386858 | - | miRNA | mirna |
| 29716 | enst00000598098 | sg00000083845 | rps5-204 | 19 | 58387264 | 58394804 | + | mRNA | protein_coding |
| 29721 | enst00000598495 | sg00000083845 | rps5-205 | 19 | 58387269 | 58394800 | + | mRNA | protein_coding |
| 29721 | enst00000196551 | sg00000083845 | rps5-201 | 19 | 58387269 | 58394804 | + | mRNA | protein_coding |
| 29727 | enst00000599909 | sg00000083845 | rps5-208 | 19 | 58387275 | 58388594 | + | lnc_RNA | retained_intron |
| 29736 | enst00000598807 | sg00000083845 | rps5-206 | 19 | 58387284 | 58393953 | + | lnc_RNA | retained_intron |
| 29741 | enst00000596046 | sg00000083845 | rps5-202 | 19 | 58387289 | 58394806 | + | mRNA | protein_coding |
| 35508 | enst00000599232 | sg00000083845 | rps5-207 | 19 | 58393056 | 58394802 | + | lnc_RNA | retained_intron |
| -36633 | enst00000594522 | sg00000269794 | ac010642.1-201 | 19 | 58319277 | 58320489 | + | pseudogenic_transcript | processed_pseudogene |
| 38542 | enst00000601382 | sg00000269855 | rnf225-201 | 19 | 58396090 | 58397079 | + | mRNA | protein_coding |
| 42673 | enst00000596379 | sg00000268307 | linc02560-201 | 19 | 58400221 | 58400679 | + | lnc_RNA | lncrna |
| 43956 | enst00000596921 | sg00000171574 | znf584-206 | 19 | 58401504 | 58417119 | + | lnc_RNA | processed_transcript |
| 44023 | enst00000594993 | sg00000171574 | znf584-204 | 19 | 58401571 | 58417011 | + | lnc_RNA | processed_transcript |
| -46880 | enst00000590505 | sg00000142396 | ervk3-1-204 | 19 | 58309030 | 58315203 | + | lnc_RNA | retained_intron |
| 47814 | enst00000444227 | sg00000232098 | ac012313.1-204 | 19 | 58404720 | 58405362 | - | lnc_RNA | lncrna |
| 49629 | enst00000597309 | sg00000232098 | ac012313.1-202 | 19 | 58406396 | 58407177 | - | lnc_RNA | lncrna |
| 49748 | enst00000593393 | sg00000232098 | ac012313.1-201 | 19 | 58404238 | 58407296 | - | lnc_RNA | lncrna |
| -49822 | enst00000608004 | sg00000142396 | ervk3-1-205 | 19 | 58306088 | 58312314 | + | mRNA | protein_coding |
| -50533 | enst00000608070 | sg00000142396 | ervk3-1-206 | 19 | 58305377 | 58312386 | + | mRNA | protein_coding |
| -50533 | enst00000609864 | sg00000142396 | ervk3-1-207 | 19 | 58305377 | 58312462 | + | mRNA | protein_coding |
| -50533 | enst00000434052 | sg00000142396 | ervk3-1-203 | 19 | 58305377 | 58306634 | + | lnc_RNA | retained_intron |
| -50535 | enst00000610038 | sg00000142396 | ervk3-1-208 | 19 | 58305375 | 58314781 | + | mRNA | protein_coding |
| -50536 | enst00000427361 | sg00000142396 | ervk3-1-202 | 19 | 58305374 | 58315202 | + | mRNA | protein_coding |
| -50591 | enst00000413518 | sg00000142396 | ervk3-1-201 | 19 | 58305319 | 58315663 | + | mRNA | protein_coding |
| 50936 | enst00000597980 | sg00000232098 | ac012313.1-203 | 19 | 58406559 | 58408484 | - | lnc_RNA | lncrna |
| 51101 | enst00000306910 | sg00000171574 | znf584-201 | 19 | 58408649 | 58418327 | + | mRNA | protein_coding |
| 51126 | enst00000598901 | sg00000171574 | znf584-207 | 19 | 58408674 | 58415552 | + | mRNA | protein_coding |
| 51140 | enst00000593920 | sg00000171574 | znf584-203 | 19 | 58408688 | 58418310 | + | mRNA | protein_coding |
| 51141 | enst00000596281 | sg00000171574 | znf584-205 | 19 | 58408689 | 58415621 | + | mRNA | protein_coding |
| 51204 | enst00000599238 | sg00000171574 | znf584-209 | 19 | 58408752 | 58418327 | + | mRNA | protein_coding |
| 51229 | enst00000322834 | sg00000171574 | znf584-202 | 19 | 58408777 | 58417091 | + | mRNA | protein_coding |
| 58067 | enst00000599145 | sg00000171574 | znf584-208 | 19 | 58415615 | 58418323 | + | lnc_RNA | retained_intron |
| 61012 | enst00000596296 | sg00000268543 | ac012313.4-201 | 19 | 58418560 | 58419310 | + | unconfirmed_transcript | tec |
| 73600 | enst00000594816 | sg00000268912 | ac012313.5-201 | 19 | 58428632 | 58431148 | - | lnc_RNA | lncrna |
| -76944 | enst00000591325 | sg00000267216 | ac020915.1-201 | 19 | 58278966 | 58315197 | + | lnc_RNA | lncrna |
| -76955 | enst00000621650 | sg00000278129 | znf8-201 | 19 | 58278955 | 58302791 | + | mRNA | protein_coding |
| -77102 | enst00000597230 | sg00000268516 | ac020915.3-201 | 19 | 58257270 | 58278808 | - | lnc_RNA | lncrna |
| 78036 | enst00000599148 | sg00000131849 | znf132-202 | 19 | 58433229 | 58435584 | - | lnc_RNA | retained_intron |
| 79637 | enst00000639285 | sg00000131849 | znf132-203 | 19 | 58433401 | 58437185 | - | mRNA | protein_coding |
| 82605 | enst00000254166 | sg00000131849 | znf132-201 | 19 | 58432814 | 58440153 | - | mRNA | protein_coding |
| 82900 | enst00000595059 | sg00000269473 | ac012313.8-201 | 19 | 58440448 | 58445849 | + | lnc_RNA | lncrna |
| -89275 | enst00000595301 | sg00000268201 | ac020915.2-201 | 19 | 58266635 | 58267685 | + | lnc_RNA | lncrna |
| 94063 | enst00000545523 | sg00000249471 | znf324b-202 | 19 | 58451611 | 58457132 | + | mRNA | protein_coding |
| 94071 | enst00000599194 | sg00000249471 | znf324b-206 | 19 | 58451619 | 58455359 | + | mRNA | protein_coding |
| 94074 | enst00000336614 | sg00000249471 | znf324b-201 | 19 | 58451622 | 58457833 | + | mRNA | protein_coding |
| 94077 | enst00000598244 | sg00000249471 | znf324b-204 | 19 | 58451625 | 58454344 | + | mRNA | protein_coding |
| 94077 | enst00000599193 | sg00000249471 | znf324b-205 | 19 | 58451625 | 58455387 | + | mRNA | protein_coding |
| 94099 | enst00000594214 | sg00000249471 | znf324b-203 | 19 | 58451647 | 58454606 | + | mRNA | protein_coding |
| -94969 | enst00000651034 | sg00000198131 | znf544-221 | 19 | 58260941 | 58277456 | + | lnc_RNA | processed_transcript |
| 109497 | enst00000535298 | sg00000083812 | znf324-202 | 19 | 58467045 | 58471466 | + | mRNA | protein_coding |
| 109508 | enst00000536459 | sg00000083812 | znf324-203 | 19 | 58467056 | 58475436 | + | mRNA | protein_coding |
| 109532 | enst00000196482 | sg00000083812 | znf324-201 | 19 | 58467080 | 58475436 | + | mRNA | protein_coding |
| -111947 | enst00000269829 | sg00000198131 | znf544-201 | 19 | 58243963 | 58264092 | + | mRNA | protein_coding |
| -111948 | enst00000627781 | sg00000198131 | znf544-220 | 19 | 58243962 | 58251384 | + | mRNA | protein_coding |
| 113370 | enst00000593925 | sg00000083812 | znf324-204 | 19 | 58470918 | 58473414 | + | mRNA | protein_coding |
| 116469 | enst00000596341 | sg00000083838 | znf446-205 | 19 | 58474017 | 58481228 | + | mRNA | protein_coding |
| 118215 | enst00000598051 | sg00000269106 | ac012313.7-201 | 19 | 58475355 | 58475763 | - | lnc_RNA | lncrna |
| 118598 | enst00000594468 | sg00000083838 | znf446-204 | 19 | 58476146 | 58478124 | + | lnc_RNA | retained_intron |
| 118608 | enst00000600013 | sg00000083838 | znf446-206 | 19 | 58476156 | 58477717 | + | mRNA | protein_coding |
| 118804 | enst00000594369 | sg00000083838 | znf446-203 | 19 | 58476352 | 58481230 | + | mRNA | protein_coding |
| 118880 | enst00000335841 | sg00000083838 | znf446-201 | 19 | 58476428 | 58481230 | + | mRNA | protein_coding |
| 118880 | enst00000622313 | sg00000083838 | znf446-208 | 19 | 58476428 | 58481224 | + | mRNA | protein_coding |
| 118895 | enst00000610298 | sg00000083838 | znf446-207 | 19 | 58476443 | 58481224 | + | mRNA | protein_coding |
| 118902 | enst00000391694 | sg00000083838 | znf446-202 | 19 | 58476450 | 58481230 | + | lnc_RNA | retained_intron |
| 126295 | enst00000516525 | sg00000252334 | rnu6-1337p-201 | 19 | 58483749 | 58483843 | - | snRNA | snrna |
| -126439 | enst00000599714 | sg00000198131 | znf544-214 | 19 | 58229471 | 58231820 | + | lnc_RNA | processed_transcript |
| -126442 | enst00000595981 | sg00000198131 | znf544-204 | 19 | 58229468 | 58277495 | + | mRNA | protein_coding |
| -126445 | enst00000637310 | sg00000283515 | ac020915.5-202 | 19 | 58229465 | 58286807 | + | mRNA | nonsense_mediated_decay |
| -126445 | enst00000596929 | sg00000198131 | znf544-209 | 19 | 58229465 | 58277247 | + | mRNA | protein_coding |
| -126445 | enst00000596677 | sg00000198131 | znf544-207 | 19 | 58229465 | 58263479 | + | mRNA | nonsense_mediated_decay |
| -126445 | enst00000600220 | sg00000198131 | znf544-217 | 19 | 58229465 | 58263293 | + | mRNA | protein_coding |
| -126445 | enst00000600044 | sg00000198131 | znf544-216 | 19 | 58229465 | 58263205 | + | mRNA | protein_coding |
| -126445 | enst00000596652 | sg00000198131 | znf544-206 | 19 | 58229465 | 58263190 | + | mRNA | protein_coding |
| -126445 | enst00000599953 | sg00000198131 | znf544-215 | 19 | 58229465 | 58262956 | + | mRNA | protein_coding |
| -126445 | enst00000598880 | sg00000198131 | znf544-212 | 19 | 58229465 | 58261252 | + | lnc_RNA | processed_transcript |
| -126445 | enst00000600775 | sg00000198131 | znf544-218 | 19 | 58229465 | 58247611 | + | lnc_RNA | processed_transcript |
| -126935 | enst00000596825 | sg00000198131 | znf544-208 | 19 | 58228975 | 58263644 | + | mRNA | protein_coding |
| -126969 | enst00000594303 | sg00000198131 | znf544-202 | 19 | 58228941 | 58230072 | + | lnc_RNA | processed_transcript |
| -126971 | enst00000652201 | sg00000198131 | znf544-222 | 19 | 58228939 | 58263676 | + | mRNA | protein_coding |
| -126991 | enst00000596597 | sg00000198131 | znf544-205 | 19 | 58228919 | 58246816 | + | lnc_RNA | processed_transcript |
| -126996 | enst00000597564 | sg00000198131 | znf544-211 | 19 | 58228914 | 58230296 | + | lnc_RNA | processed_transcript |
| -126996 | enst00000597240 | sg00000198131 | znf544-210 | 19 | 58228914 | 58247328 | + | mRNA | protein_coding |
| -126996 | enst00000594384 | sg00000198131 | znf544-203 | 19 | 58228914 | 58260965 | + | mRNA | protein_coding |
| -126996 | enst00000637233 | sg00000283515 | ac020915.5-201 | 19 | 58228914 | 58315183 | + | mRNA | nonsense_mediated_decay |
| -126996 | enst00000602260 | sg00000198131 | znf544-219 | 19 | 58228914 | 58229986 | + | lnc_RNA | retained_intron |
| -127316 | enst00000599227 | sg00000198131 | znf544-213 | 19 | 58228594 | 58263644 | + | mRNA | protein_coding |
| -131404 | enst00000596836 | sg00000268866 | ac020915.4-201 | 19 | 58224506 | 58225469 | + | pseudogenic_transcript | processed_pseudogene |
| 133249 | enst00000579576 | sg00000265272 | rn7sl693p-201 | 19 | 58490797 | 58491075 | + | ncRNA | misc_rna |
| -139730 | enst00000492022 | sg00000213013 | rps15ap36-201 | 19 | 58216180 | 58216561 | + | pseudogenic_transcript | processed_pseudogene |
| 141594 | enst00000601997 | sg00000083807 | slc27a5-208 | 19 | 58498475 | 58499142 | - | lnc_RNA | retained_intron |
| 141693 | enst00000599700 | sg00000083807 | slc27a5-206 | 19 | 58498337 | 58499241 | - | lnc_RNA | processed_transcript |
| 141715 | enst00000595851 | sg00000083807 | slc27a5-205 | 19 | 58479512 | 58499263 | - | mRNA | nonsense_mediated_decay |
| 141727 | enst00000594786 | sg00000083807 | slc27a5-204 | 19 | 58498333 | 58499275 | - | mRNA | protein_coding |
| 142957 | enst00000619318 | sg00000273901 | ac012313.9-201 | 19 | 58500505 | 58501137 | + | lnc_RNA | lncrna |
| -147812 | enst00000595146 | sg00000171606 | znf274-206 | 19 | 58208098 | 58213423 | + | lnc_RNA | retained_intron |
| 152624 | enst00000594683 | sg00000083807 | slc27a5-203 | 19 | 58500594 | 58510172 | - | lnc_RNA | retained_intron |
| 154444 | enst00000263093 | sg00000083807 | slc27a5-201 | 19 | 58498333 | 58511992 | - | mRNA | protein_coding |
| 154444 | enst00000601355 | sg00000083807 | slc27a5-207 | 19 | 58498386 | 58511992 | - | mRNA | protein_coding |
| 154865 | enst00000593745 | sg00000083807 | slc27a5-202 | 19 | 58507382 | 58512413 | - | lnc_RNA | retained_intron |
| 162006 | enst00000354590 | sg00000119574 | zbtb45-201 | 19 | 58513530 | 58519554 | - | mRNA | protein_coding |
| 162011 | enst00000596739 | sg00000119574 | zbtb45-203 | 19 | 58517623 | 58519559 | - | mRNA | protein_coding |
| 162203 | enst00000600990 | sg00000119574 | zbtb45-205 | 19 | 58513566 | 58519751 | - | mRNA | protein_coding |
| 162262 | enst00000594051 | sg00000119574 | zbtb45-202 | 19 | 58513530 | 58519810 | - | mRNA | protein_coding |
| -168963 | enst00000601995 | sg00000171606 | znf274-209 | 19 | 58186947 | 58202468 | + | lnc_RNA | processed_transcript |
| -171989 | enst00000594839 | sg00000171606 | znf274-205 | 19 | 58183921 | 58207089 | + | mRNA | protein_coding |
| -172416 | enst00000597528 | sg00000171606 | znf274-207 | 19 | 58183494 | 58187023 | + | mRNA | protein_coding |
| -172456 | enst00000610905 | sg00000171606 | znf274-210 | 19 | 58183454 | 58213552 | + | mRNA | protein_coding |
| -172483 | enst00000326804 | sg00000171606 | znf274-201 | 19 | 58183427 | 58213552 | + | mRNA | protein_coding |
| -172510 | enst00000615675 | sg00000171606 | znf274-211 | 19 | 58183400 | 58210392 | + | lnc_RNA | retained_intron |
| -172516 | enst00000594248 | sg00000171606 | znf274-204 | 19 | 58183394 | 58186176 | + | lnc_RNA | retained_intron |
| -172801 | enst00000619307 | sg00000171606 | znf274-213 | 19 | 58183109 | 58210709 | + | lnc_RNA | retained_intron |
| -172823 | enst00000345813 | sg00000171606 | znf274-202 | 19 | 58183087 | 58213554 | + | mRNA | protein_coding |
| -172838 | enst00000600704 | sg00000171606 | znf274-208 | 19 | 58183072 | 58187042 | + | lnc_RNA | processed_transcript |
| -172847 | enst00000621145 | sg00000171606 | znf274-214 | 19 | 58183063 | 58210442 | + | lnc_RNA | retained_intron |
| -172849 | enst00000617501 | sg00000171606 | znf274-212 | 19 | 58183061 | 58213562 | + | mRNA | protein_coding |
| -172881 | enst00000424679 | sg00000171606 | znf274-203 | 19 | 58183029 | 58213562 | + | mRNA | protein_coding |
| 181363 | enst00000600130 | sg00000119574 | zbtb45-204 | 19 | 58517309 | 58538911 | - | mRNA | protein_coding |
| 186030 | enst00000579267 | sg00000264910 | rn7sl525p-201 | 19 | 58543299 | 58543578 | - | ncRNA | misc_rna |
| 186516 | enst00000253024 | sg00000130726 | trim28-201 | 19 | 58544064 | 58550715 | + | mRNA | protein_coding |
| 186543 | enst00000593582 | sg00000130726 | trim28-203 | 19 | 58544091 | 58547626 | + | mRNA | protein_coding |
| 186909 | enst00000594806 | sg00000130726 | trim28-204 | 19 | 58544457 | 58547888 | + | mRNA | protein_coding |
| 186925 | enst00000341753 | sg00000130726 | trim28-202 | 19 | 58544473 | 58550715 | + | mRNA | protein_coding |
| 187619 | enst00000597968 | sg00000130726 | trim28-211 | 19 | 58545167 | 58545896 | + | mRNA | protein_coding |
| 189587 | enst00000597618 | sg00000130726 | trim28-210 | 19 | 58547135 | 58547906 | + | lnc_RNA | retained_intron |
| 189592 | enst00000597423 | sg00000130726 | trim28-209 | 19 | 58547140 | 58548172 | + | lnc_RNA | retained_intron |
| -189744 | enst00000597885 | sg00000269236 | ac008751.2-201 | 19 | 58166166 | 58167145 | + | pseudogenic_transcript | processed_pseudogene |
| 190011 | enst00000597172 | sg00000130726 | trim28-208 | 19 | 58547559 | 58548530 | + | lnc_RNA | retained_intron |
| 190143 | enst00000601150 | sg00000130726 | trim28-215 | 19 | 58547691 | 58549224 | + | lnc_RNA | retained_intron |
| 190214 | enst00000597995 | sg00000130726 | trim28-212 | 19 | 58547762 | 58549089 | + | lnc_RNA | retained_intron |
| 190746 | enst00000597136 | sg00000130726 | trim28-207 | 19 | 58548294 | 58550722 | + | mRNA | protein_coding |
| 191321 | enst00000595028 | sg00000130726 | trim28-205 | 19 | 58548869 | 58549444 | + | lnc_RNA | retained_intron |
| 191902 | enst00000595974 | sg00000130726 | trim28-206 | 19 | 58549450 | 58550403 | + | lnc_RNA | retained_intron |
| 192008 | enst00000600840 | sg00000130726 | trim28-214 | 19 | 58549556 | 58550067 | + | lnc_RNA | retained_intron |
| 192097 | enst00000598355 | sg00000130726 | trim28-213 | 19 | 58549645 | 58550649 | + | lnc_RNA | retained_intron |
| 192737 | enst00000621968 | sg00000275924 | mir6807-201 | 19 | 58550285 | 58550376 | + | miRNA | mirna |
| 196549 | enst00000600006 | sg00000130724 | chmp2a-205 | 19 | 58551566 | 58554097 | - | mRNA | protein_coding |
| 197090 | enst00000600118 | sg00000130724 | chmp2a-206 | 19 | 58551566 | 58554638 | - | mRNA | protein_coding |
| 197412 | enst00000596708 | sg00000130724 | chmp2a-202 | 19 | 58552055 | 58554960 | - | mRNA | protein_coding |
| 197425 | enst00000601220 | sg00000130724 | chmp2a-208 | 19 | 58551566 | 58554973 | - | mRNA | protein_coding |
| 197442 | enst00000597848 | sg00000130724 | chmp2a-204 | 19 | 58554046 | 58554990 | - | mRNA | protein_coding |
| 197445 | enst00000597209 | sg00000130724 | chmp2a-203 | 19 | 58552098 | 58554993 | - | lnc_RNA | retained_intron |
| 197542 | enst00000600804 | sg00000130724 | chmp2a-207 | 19 | 58553748 | 58555090 | - | lnc_RNA | retained_intron |
| 197557 | enst00000312547 | sg00000130724 | chmp2a-201 | 19 | 58551566 | 58555105 | - | mRNA | protein_coding |
| 199541 | enst00000596985 | sg00000130725 | ube2m-204 | 19 | 58556201 | 58557089 | - | mRNA | protein_coding |
| 199581 | enst00000599829 | sg00000130725 | ube2m-205 | 19 | 58556582 | 58557129 | - | lnc_RNA | retained_intron |
| 199601 | enst00000593801 | sg00000130725 | ube2m-202 | 19 | 58556594 | 58557149 | - | lnc_RNA | retained_intron |
| -200046 | enst00000659607 | sg00000286632 | ac008751.3-201 | 19 | 58155864 | 58177576 | + | lnc_RNA | lncrna |
| -200800 | enst00000500161 | sg00000181894 | znf329-202 | 19 | 58126335 | 58155110 | - | mRNA | nonsense_mediated_decay |
| -200843 | enst00000601887 | sg00000181894 | znf329-205 | 19 | 58129376 | 58155067 | - | mRNA | protein_coding |
| 201063 | enst00000253023 | sg00000130725 | ube2m-201 | 19 | 58555712 | 58558611 | - | mRNA | protein_coding |
| 201406 | enst00000595957 | sg00000130725 | ube2m-203 | 19 | 58556141 | 58558954 | - | mRNA | protein_coding |
| 201581 | enst00000593642 | sg00000267858 | mzf1-as1-201 | 19 | 58559129 | 58570584 | + | lnc_RNA | lncrna |
| 201612 | enst00000661912 | sg00000267858 | mzf1-as1-205 | 19 | 58559160 | 58560279 | + | lnc_RNA | lncrna |
| 201638 | enst00000600726 | sg00000267858 | mzf1-as1-203 | 19 | 58559186 | 58571029 | + | lnc_RNA | lncrna |
| 201661 | enst00000653470 | sg00000267858 | mzf1-as1-204 | 19 | 58559209 | 58573114 | + | lnc_RNA | lncrna |
| 201677 | enst00000600534 | sg00000267858 | mzf1-as1-202 | 19 | 58559225 | 58574797 | + | lnc_RNA | lncrna |
| -205121 | enst00000598312 | sg00000181894 | znf329-204 | 19 | 58126248 | 58150789 | - | mRNA | protein_coding |
| -205123 | enst00000597186 | sg00000181894 | znf329-203 | 19 | 58126252 | 58150787 | - | mRNA | protein_coding |
| 207065 | enst00000600004 | sg00000099326 | mzf1-207 | 19 | 58561931 | 58564613 | - | lnc_RNA | retained_intron |
| -213246 | enst00000358067 | sg00000181894 | znf329-201 | 19 | 58126330 | 58142664 | - | mRNA | protein_coding |
| 213997 | enst00000595245 | sg00000099326 | mzf1-204 | 19 | 58568167 | 58571545 | - | lnc_RNA | retained_intron |
| 215189 | enst00000600048 | sg00000099326 | mzf1-208 | 19 | 58569334 | 58572737 | - | lnc_RNA | retained_intron |
| 215227 | enst00000594108 | sg00000099326 | mzf1-202 | 19 | 58569205 | 58572775 | - | mRNA | protein_coding |
| 215750 | enst00000594234 | sg00000099326 | mzf1-203 | 19 | 58561932 | 58573298 | - | mRNA | protein_coding |
| 215763 | enst00000596039 | sg00000099326 | mzf1-205 | 19 | 58571200 | 58573311 | - | mRNA | protein_coding |
| 215787 | enst00000215057 | sg00000099326 | mzf1-201 | 19 | 58561932 | 58573335 | - | mRNA | protein_coding |
| 215955 | enst00000479047 | sg00000213753 | cenpbd1p1-202 | 19 | 58573503 | 58581646 | + | lnc_RNA | processed_transcript |
| 216027 | enst00000599369 | sg00000099326 | mzf1-206 | 19 | 58561933 | 58573575 | - | mRNA | protein_coding |
| 217890 | enst00000651608 | sg00000213753 | cenpbd1p1-204 | 19 | 58575438 | 58605223 | + | lnc_RNA | processed_transcript |
| 217897 | enst00000487264 | sg00000286104 | ac016629.3-201 | 19 | 58575445 | 58599801 | + | lnc_RNA | lncrna |
| 217908 | enst00000473164 | sg00000286104 | ac016629.3-202 | 19 | 58575456 | 58599575 | + | lnc_RNA | lncrna |
| 217912 | enst00000493504 | sg00000213753 | cenpbd1p1-203 | 19 | 58575460 | 58584397 | + | lnc_RNA | processed_transcript |
| -219197 | enst00000600438 | sg00000268293 | ac008751.1-201 | 19 | 58136713 | 58137054 | + | pseudogenic_transcript | processed_pseudogene |
| 225048 | enst00000652551 | sg00000286104 | ac016629.3-203 | 19 | 58582596 | 58601316 | + | lnc_RNA | lncrna |
| 228610 | enst00000597341 | sg00000269032 | ac016629.1-201 | 19 | 58586158 | 58586356 | + | pseudogenic_transcript | transcribed_processed_pseudogene |
| -237483 | enst00000595944 | sg00000121413 | zscan18-208 | 19 | 58107616 | 58118427 | - | mRNA | protein_coding |
| -237484 | enst00000600404 | sg00000121413 | zscan18-212 | 19 | 58084482 | 58118426 | - | mRNA | protein_coding |
| -237513 | enst00000595721 | sg00000121413 | zscan18-206 | 19 | 58090176 | 58118397 | - | mRNA | protein_coding |
| -237544 | enst00000594567 | sg00000121413 | zscan18-205 | 19 | 58108802 | 58118366 | - | lnc_RNA | processed_transcript |
| 241419 | enst00000464061 | sg00000213753 | cenpbd1p1-201 | 19 | 58598967 | 58599435 | + | pseudogenic_transcript | transcribed_processed_pseudogene |
| 241755 | enst00000596029 | sg00000269600 | ac016629.2-201 | 19 | 58593134 | 58599303 | - | lnc_RNA | lncrna |
| 241807 | enst00000596427 | sg00000269600 | ac016629.2-202 | 19 | 58597183 | 58599355 | - | lnc_RNA | lncrna |
| -257547 | enst00000601144 | sg00000121413 | zscan18-217 | 19 | 58084337 | 58098363 | - | mRNA | protein_coding |
| -257679 | enst00000594191 | sg00000121413 | zscan18-204 | 19 | 58087093 | 58098231 | - | lnc_RNA | retained_intron |
| -257682 | enst00000421612 | sg00000121413 | zscan18-202 | 19 | 58084438 | 58098228 | - | mRNA | protein_coding |
| -257682 | enst00000601063 | sg00000121413 | zscan18-216 | 19 | 58090233 | 58098228 | - | mRNA | protein_coding |
| -257696 | enst00000600897 | sg00000121413 | zscan18-215 | 19 | 58088685 | 58098214 | - | mRNA | protein_coding |
| -257700 | enst00000600318 | sg00000121413 | zscan18-211 | 19 | 58087637 | 58098210 | - | lnc_RNA | retained_intron |
| -257700 | enst00000240727 | sg00000121413 | zscan18-201 | 19 | 58083839 | 58098210 | - | mRNA | protein_coding |
| -257707 | enst00000600845 | sg00000121413 | zscan18-214 | 19 | 58088688 | 58098203 | - | mRNA | protein_coding |
| -265312 | enst00000598497 | sg00000121413 | zscan18-210 | 19 | 58083843 | 58090598 | - | lnc_RNA | retained_intron |
| -265949 | enst00000433686 | sg00000121413 | zscan18-203 | 19 | 58083838 | 58089961 | - | mRNA | protein_coding |
| -267883 | enst00000596372 | sg00000121413 | zscan18-209 | 19 | 58083859 | 58088027 | - | lnc_RNA | retained_intron |
| -268457 | enst00000595784 | sg00000121413 | zscan18-207 | 19 | 58086580 | 58087453 | - | lnc_RNA | retained_intron |
| -268533 | enst00000600522 | sg00000121413 | zscan18-213 | 19 | 58086174 | 58087377 | - | mRNA | protein_coding |
| -285940 | enst00000469492 | sg00000243642 | rn7sl526p-201 | 19 | 58069970 | 58070288 | + | ncRNA | misc_rna |
| -296176 | enst00000515535 | sg00000176293 | znf135-206 | 19 | 58059734 | 58086310 | + | mRNA | nonsense_mediated_decay |
| -296630 | enst00000506786 | sg00000176293 | znf135-204 | 19 | 58059280 | 58069405 | + | mRNA | protein_coding |
| -296641 | enst00000511556 | sg00000176293 | znf135-205 | 19 | 58059269 | 58068630 | + | mRNA | protein_coding |
| -296666 | enst00000313434 | sg00000176293 | znf135-201 | 19 | 58059244 | 58069408 | + | mRNA | protein_coding |
| -296671 | enst00000401053 | sg00000176293 | znf135-203 | 19 | 58059239 | 58069755 | + | mRNA | protein_coding |
| -296671 | enst00000359978 | sg00000176293 | znf135-202 | 19 | 58059239 | 58069405 | + | mRNA | protein_coding |
| -306564 | enst00000605144 | sg00000270837 | hnrnpdlp4-201 | 19 | 58049046 | 58049346 | - | pseudogenic_transcript | processed_pseudogene |
| -311318 | enst00000597330 | sg00000268660 | letm1p2-201 | 19 | 58044592 | 58046769 | + | pseudogenic_transcript | processed_pseudogene |
| -321804 | enst00000601162 | sg00000152467 | zscan1-203 | 19 | 58034106 | 58038442 | + | mRNA | protein_coding |
| -321878 | enst00000391700 | sg00000152467 | zscan1-202 | 19 | 58034032 | 58038444 | + | mRNA | protein_coding |
| -321885 | enst00000282326 | sg00000152467 | zscan1-201 | 19 | 58034025 | 58054631 | + | mRNA | protein_coding |
| -329984 | enst00000442399 | sg00000235974 | vn2r19p-201 | 19 | 58012589 | 58025926 | - | pseudogenic_transcript | unitary_pseudogene |
| -330321 | enst00000663410 | sg00000286949 | ac008969.2-201 | 19 | 58016695 | 58025589 | - | lnc_RNA | lncrna |
| -351486 | enst00000665448 | sg00000176593 | ac008969.1-209 | 19 | 58004424 | 58009855 | + | lnc_RNA | lncrna |
| -352561 | enst00000341164 | sg00000166704 | znf606-201 | 19 | 57977053 | 58003349 | - | mRNA | protein_coding |
| -352989 | enst00000547364 | sg00000176593 | ac008969.1-208 | 19 | 58002921 | 58009930 | + | lnc_RNA | lncrna |
| -353002 | enst00000553254 | sg00000176593 | ac008969.1-207 | 19 | 58002908 | 58009852 | + | lnc_RNA | lncrna |
| -353008 | enst00000546956 | sg00000176593 | ac008969.1-206 | 19 | 58002902 | 58004161 | + | lnc_RNA | retained_intron |
| -353011 | enst00000666048 | sg00000176593 | ac008969.1-205 | 19 | 58002899 | 58007182 | + | lnc_RNA | lncrna |
| -353020 | enst00000546949 | sg00000176593 | ac008969.1-204 | 19 | 58002890 | 58006409 | + | lnc_RNA | lncrna |
| -353038 | enst00000313957 | sg00000176593 | ac008969.1-203 | 19 | 58002872 | 58007206 | + | lnc_RNA | lncrna |
| -353038 | enst00000668392 | sg00000176593 | ac008969.1-202 | 19 | 58002872 | 58007177 | + | lnc_RNA | lncrna |
| -353083 | enst00000551380 | sg00000166704 | znf606-207 | 19 | 57979154 | 58002827 | - | mRNA | protein_coding |
| -353091 | enst00000547121 | sg00000166704 | znf606-203 | 19 | 57999264 | 58002819 | - | mRNA | protein_coding |
| -353091 | enst00000547828 | sg00000166704 | znf606-204 | 19 | 57997396 | 58002819 | - | mRNA | protein_coding |
| -353091 | enst00000550599 | sg00000166704 | znf606-206 | 19 | 57978265 | 58002819 | - | mRNA | nonsense_mediated_decay |
| -353093 | enst00000546715 | sg00000166704 | znf606-202 | 19 | 58000224 | 58002817 | - | mRNA | protein_coding |
| -353115 | enst00000552184 | sg00000166704 | znf606-208 | 19 | 58000571 | 58002795 | - | mRNA | protein_coding |
| -353128 | enst00000552579 | sg00000166704 | znf606-209 | 19 | 57988676 | 58002782 | - | lnc_RNA | processed_transcript |
| -353164 | enst00000550560 | sg00000166704 | znf606-205 | 19 | 58001157 | 58002746 | - | lnc_RNA | retained_intron |
| -353849 | enst00000550135 | sg00000176593 | ac008969.1-201 | 19 | 58002061 | 58011232 | + | lnc_RNA | lncrna |
| -381376 | enst00000314391 | sg00000177025 | c19orf18-201 | 19 | 57958437 | 57974534 | - | mRNA | protein_coding |
| -402151 | enst00000462726 | sg00000243234 | ac010326.2-201 | 19 | 57953158 | 57953759 | - | pseudogenic_transcript | processed_pseudogene |
| -408204 | enst00000282308 | sg00000152454 | ac010326.1-201 | 19 | 57940833 | 57947706 | - | mRNA | protein_coding |
| -408235 | enst00000598928 | sg00000152454 | ac010326.1-202 | 19 | 57940924 | 57947675 | - | mRNA | protein_coding |
| -420517 | enst00000601593 | sg00000196724 | znf418-211 | 19 | 57927888 | 57935393 | - | mRNA | protein_coding |
| -420523 | enst00000425570 | sg00000196724 | znf418-202 | 19 | 57922266 | 57935387 | - | mRNA | protein_coding |
| -420527 | enst00000599852 | sg00000196724 | znf418-208 | 19 | 57925770 | 57935383 | - | mRNA | protein_coding |
| -420530 | enst00000595569 | sg00000196724 | znf418-204 | 19 | 57927978 | 57935380 | - | mRNA | protein_coding |
| -420536 | enst00000600353 | sg00000196724 | znf418-209 | 19 | 57934815 | 57935374 | - | lnc_RNA | processed_transcript |
| -420538 | enst00000396147 | sg00000196724 | znf418-201 | 19 | 57921884 | 57935372 | - | mRNA | protein_coding |
| -420556 | enst00000598213 | sg00000196724 | znf418-206 | 19 | 57922261 | 57935354 | - | lnc_RNA | processed_transcript |
| -420734 | enst00000600989 | sg00000196724 | znf418-210 | 19 | 57922431 | 57935176 | - | mRNA | protein_coding |
| -421673 | enst00000593296 | sg00000196724 | znf418-203 | 19 | 57927905 | 57934237 | - | mRNA | protein_coding |
| -421947 | enst00000595830 | sg00000196724 | znf418-205 | 19 | 57921884 | 57933963 | - | mRNA | protein_coding |
| -422005 | enst00000616958 | sg00000196724 | znf418-212 | 19 | 57926052 | 57933905 | - | mRNA | protein_coding |
| -430116 | enst00000599086 | sg00000196724 | znf418-207 | 19 | 57922261 | 57925794 | - | lnc_RNA | processed_transcript |
| -439300 | enst00000598526 | sg00000173480 | znf417-205 | 19 | 57909995 | 57916610 | - | mRNA | protein_coding |
| -439301 | enst00000599251 | sg00000173480 | znf417-207 | 19 | 57910104 | 57916609 | - | mRNA | protein_coding |
| -439318 | enst00000312026 | sg00000173480 | znf417-201 | 19 | 57905774 | 57916592 | - | mRNA | protein_coding |
| -439318 | enst00000597515 | sg00000173480 | znf417-204 | 19 | 57909977 | 57916592 | - | mRNA | protein_coding |
| -439319 | enst00000595559 | sg00000173480 | znf417-203 | 19 | 57908480 | 57916591 | - | mRNA | protein_coding |
| -439319 | enst00000602124 | sg00000269476 | ac010326.3-201 | 19 | 57876765 | 57916591 | - | mRNA | nonsense_mediated_decay |
| -439333 | enst00000598629 | sg00000173480 | znf417-206 | 19 | 57910085 | 57916577 | - | mRNA | protein_coding |
| -443743 | enst00000594396 | sg00000173480 | znf417-202 | 19 | 57900296 | 57912167 | - | mRNA | protein_coding |
| -466836 | enst00000614383 | sg00000204514 | znf814-215 | 19 | 57872822 | 57889074 | - | mRNA | protein_coding |
| -466836 | enst00000594629 | sg00000204514 | znf814-203 | 19 | 57868536 | 57889074 | - | lnc_RNA | processed_transcript |
| -466873 | enst00000435989 | sg00000204514 | znf814-201 | 19 | 57869381 | 57889037 | - | mRNA | protein_coding |
| -466873 | enst00000597348 | sg00000204514 | znf814-210 | 19 | 57864758 | 57889037 | - | mRNA | nonsense_mediated_decay |
| -466891 | enst00000597832 | sg00000204514 | znf814-213 | 19 | 57850679 | 57889019 | - | mRNA | protein_coding |
| -466941 | enst00000597807 | sg00000204514 | znf814-212 | 19 | 57876475 | 57888969 | - | mRNA | protein_coding |
| -466952 | enst00000597342 | sg00000204514 | znf814-209 | 19 | 57850320 | 57888958 | - | mRNA | protein_coding |
| -466990 | enst00000596604 | sg00000204514 | znf814-208 | 19 | 57850315 | 57888920 | - | mRNA | protein_coding |
| -467089 | enst00000595295 | sg00000204514 | znf814-205 | 19 | 57858130 | 57888821 | - | mRNA | protein_coding |
| -467093 | enst00000600634 | sg00000204514 | znf814-214 | 19 | 57864759 | 57888817 | - | mRNA | protein_coding |
| -467103 | enst00000595894 | sg00000204514 | znf814-206 | 19 | 57852166 | 57888807 | - | mRNA | nonsense_mediated_decay |
| -467130 | enst00000595048 | sg00000204514 | znf814-204 | 19 | 57864765 | 57888780 | - | mRNA | protein_coding |
| -484251 | enst00000594159 | sg00000204514 | znf814-202 | 19 | 57869383 | 57871659 | - | lnc_RNA | retained_intron |
| -487738 | enst00000597780 | sg00000269867 | ac010326.4-201 | 19 | 57867038 | 57868172 | - | lnc_RNA | lncrna |
| -487940 | enst00000603829 | sg00000270804 | ac010326.5-202 | 19 | 57867970 | 57868834 | + | pseudogenic_transcript | transcribed_processed_pseudogene |
| -488025 | enst00000604665 | sg00000270804 | ac010326.5-201 | 19 | 57867885 | 57868775 | + | lnc_RNA | processed_transcript |
| -494625 | enst00000596433 | sg00000198466 | znf587-205 | 19 | 57861285 | 57862158 | + | lnc_RNA | processed_transcript |
| -495271 | enst00000596184 | sg00000204514 | znf814-207 | 19 | 57858144 | 57860639 | - | lnc_RNA | retained_intron |
| -498621 | enst00000597652 | sg00000204514 | znf814-211 | 19 | 57848731 | 57857289 | - | lnc_RNA | processed_transcript |
| -499941 | enst00000419854 | sg00000198466 | znf587-202 | 19 | 57855969 | 57864041 | + | lnc_RNA | retained_intron |
Source file: /hps/research1/birney/users/adrien/analyses/cancer_DNA_promethion/run_1_2_3_4/DNA_pipeline_2/results/methylation/pycometh_meth_comp_CGI_3/out.tsv.gz
MD5 hash: 9aa0e3f69cb4e12345c3758eb68a5efc