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CpG interval report generated on 20/05/20 with pycoMeth 0.4.6
Interval details
| pvalue rank | chromosome | start | end | length | number of samples | number of CpGs | pvalue | adjusted pvalue |
|---|---|---|---|---|---|---|---|---|
| #63 | 16 | 49277180 | 49278574 | 1394 | 3 | 47 | 2.41763e-20 | 3.8164e-18 |
Methylation log-likelihood ratio by CpG position
Distribution of CpG methylation log-likelihood ratio by sample
Closest transcripts TSS
| distance to tss | transcript id | gene id | transcript name | chromosome | start | end | strand | feature type | transcript biotype |
|---|---|---|---|---|---|---|---|---|---|
| -1601 | enst00000655430 | sg00000287469 | ac044798.3-201 | 16 | 49072543 | 49275579 | - | lnc_RNA | lncrna |
| 2908 | enst00000564786 | sg00000102924 | cbln1-203 | 16 | 49279290 | 49281482 | - | mRNA | nonsense_mediated_decay |
| 2988 | enst00000536749 | sg00000102924 | cbln1-202 | 16 | 49279312 | 49281562 | - | mRNA | protein_coding |
| 3264 | enst00000219197 | sg00000102924 | cbln1-201 | 16 | 49277917 | 49281838 | - | mRNA | protein_coding |
| -3303 | enst00000659681 | sg00000287469 | ac044798.3-202 | 16 | 49073461 | 49273877 | - | lnc_RNA | lncrna |
| 3447 | enst00000654606 | sg00000279249 | ac007614.1-201 | 16 | 49282021 | 49290472 | + | lnc_RNA | lncrna |
| 3463 | enst00000569877 | sg00000279249 | ac007614.1-203 | 16 | 49282037 | 49296736 | + | lnc_RNA | lncrna |
| 3463 | enst00000647485 | sg00000279249 | ac007614.1-205 | 16 | 49282037 | 49350504 | + | lnc_RNA | lncrna |
| 3463 | enst00000643467 | sg00000279249 | ac007614.1-206 | 16 | 49282037 | 49350504 | + | lnc_RNA | lncrna |
| 3463 | enst00000623424 | sg00000279249 | ac007614.1-204 | 16 | 49282037 | 49350504 | + | lnc_RNA | lncrna |
| 3463 | enst00000647093 | sg00000279249 | ac007614.1-202 | 16 | 49282037 | 49290528 | + | lnc_RNA | lncrna |
| 3463 | enst00000669545 | sg00000279249 | ac007614.1-216 | 16 | 49282037 | 49290477 | + | lnc_RNA | lncrna |
| 3463 | enst00000664979 | sg00000279249 | ac007614.1-217 | 16 | 49282037 | 49290477 | + | lnc_RNA | lncrna |
| 3463 | enst00000659070 | sg00000279249 | ac007614.1-210 | 16 | 49282037 | 49290477 | + | lnc_RNA | lncrna |
| 3463 | enst00000668624 | sg00000279249 | ac007614.1-212 | 16 | 49282037 | 49290472 | + | lnc_RNA | lncrna |
| 3463 | enst00000664244 | sg00000279249 | ac007614.1-208 | 16 | 49282037 | 49290472 | + | lnc_RNA | lncrna |
| 3463 | enst00000665277 | sg00000279249 | ac007614.1-209 | 16 | 49282037 | 49290477 | + | lnc_RNA | lncrna |
| 3463 | enst00000654109 | sg00000279249 | ac007614.1-211 | 16 | 49282037 | 49290472 | + | lnc_RNA | lncrna |
| 3463 | enst00000662771 | sg00000279249 | ac007614.1-214 | 16 | 49282037 | 49290460 | + | lnc_RNA | lncrna |
| 3463 | enst00000662260 | sg00000279249 | ac007614.1-219 | 16 | 49282037 | 49290452 | + | lnc_RNA | lncrna |
| 3463 | enst00000666248 | sg00000279249 | ac007614.1-218 | 16 | 49282037 | 49290446 | + | lnc_RNA | lncrna |
| 3463 | enst00000667121 | sg00000279249 | ac007614.1-213 | 16 | 49282037 | 49290441 | + | lnc_RNA | lncrna |
| 3463 | enst00000662939 | sg00000279249 | ac007614.1-215 | 16 | 49282037 | 49290441 | + | lnc_RNA | lncrna |
| 3463 | enst00000661501 | sg00000279249 | ac007614.1-207 | 16 | 49282037 | 49290472 | + | lnc_RNA | lncrna |
| 3480 | enst00000664312 | sg00000279249 | ac007614.1-220 | 16 | 49282054 | 49290472 | + | lnc_RNA | lncrna |
| 3483 | enst00000656377 | sg00000279249 | ac007614.1-221 | 16 | 49282057 | 49348537 | + | lnc_RNA | lncrna |
| 3486 | enst00000655632 | sg00000279249 | ac007614.1-223 | 16 | 49282060 | 49338405 | + | lnc_RNA | lncrna |
| 3486 | enst00000667110 | sg00000279249 | ac007614.1-229 | 16 | 49282060 | 49338875 | + | lnc_RNA | lncrna |
| 3486 | enst00000671113 | sg00000279249 | ac007614.1-227 | 16 | 49282060 | 49338413 | + | lnc_RNA | lncrna |
| 3486 | enst00000667574 | sg00000279249 | ac007614.1-230 | 16 | 49282060 | 49294123 | + | lnc_RNA | lncrna |
| 3486 | enst00000654738 | sg00000279249 | ac007614.1-233 | 16 | 49282060 | 49349367 | + | lnc_RNA | lncrna |
| 3486 | enst00000663277 | sg00000279249 | ac007614.1-226 | 16 | 49282060 | 49349367 | + | lnc_RNA | lncrna |
| 3486 | enst00000668213 | sg00000279249 | ac007614.1-232 | 16 | 49282060 | 49338405 | + | lnc_RNA | lncrna |
| 3486 | enst00000655726 | sg00000279249 | ac007614.1-235 | 16 | 49282060 | 49290477 | + | lnc_RNA | lncrna |
| 3486 | enst00000654193 | sg00000279249 | ac007614.1-224 | 16 | 49282060 | 49290441 | + | lnc_RNA | lncrna |
| 3486 | enst00000671642 | sg00000279249 | ac007614.1-225 | 16 | 49282060 | 49290441 | + | lnc_RNA | lncrna |
| 3486 | enst00000662122 | sg00000279249 | ac007614.1-234 | 16 | 49282060 | 49290441 | + | lnc_RNA | lncrna |
| 3486 | enst00000663746 | sg00000279249 | ac007614.1-228 | 16 | 49282060 | 49349367 | + | lnc_RNA | lncrna |
| 3486 | enst00000660181 | sg00000279249 | ac007614.1-222 | 16 | 49282060 | 49290472 | + | lnc_RNA | lncrna |
| 3486 | enst00000664655 | sg00000279249 | ac007614.1-231 | 16 | 49282060 | 49349400 | + | lnc_RNA | lncrna |
| 3488 | enst00000659733 | sg00000279249 | ac007614.1-237 | 16 | 49282062 | 49339243 | + | lnc_RNA | lncrna |
| 3488 | enst00000670604 | sg00000279249 | ac007614.1-238 | 16 | 49282062 | 49290477 | + | lnc_RNA | lncrna |
| 3488 | enst00000668965 | sg00000279249 | ac007614.1-236 | 16 | 49282062 | 49290472 | + | lnc_RNA | lncrna |
| 3489 | enst00000665785 | sg00000279249 | ac007614.1-239 | 16 | 49282063 | 49349075 | + | lnc_RNA | lncrna |
| 3493 | enst00000654886 | sg00000279249 | ac007614.1-241 | 16 | 49282067 | 49290453 | + | lnc_RNA | lncrna |
| 3493 | enst00000659128 | sg00000279249 | ac007614.1-240 | 16 | 49282067 | 49290441 | + | lnc_RNA | lncrna |
| 3494 | enst00000659529 | sg00000279249 | ac007614.1-242 | 16 | 49282068 | 49290362 | + | lnc_RNA | lncrna |
| 3498 | enst00000664562 | sg00000279249 | ac007614.1-243 | 16 | 49282072 | 49338964 | + | lnc_RNA | lncrna |
| 3500 | enst00000664315 | sg00000279249 | ac007614.1-244 | 16 | 49282074 | 49290551 | + | lnc_RNA | lncrna |
| 3500 | enst00000661277 | sg00000279249 | ac007614.1-246 | 16 | 49282074 | 49349357 | + | lnc_RNA | lncrna |
| 3500 | enst00000655236 | sg00000279249 | ac007614.1-245 | 16 | 49282074 | 49290472 | + | lnc_RNA | lncrna |
| 3505 | enst00000653520 | sg00000279249 | ac007614.1-248 | 16 | 49282079 | 49338393 | + | lnc_RNA | lncrna |
| 3505 | enst00000656220 | sg00000279249 | ac007614.1-247 | 16 | 49282079 | 49338411 | + | lnc_RNA | lncrna |
| 3505 | enst00000666113 | sg00000279249 | ac007614.1-249 | 16 | 49282079 | 49349378 | + | lnc_RNA | lncrna |
| 3508 | enst00000670901 | sg00000279249 | ac007614.1-250 | 16 | 49282082 | 49331241 | + | lnc_RNA | lncrna |
| 3508 | enst00000654991 | sg00000279249 | ac007614.1-251 | 16 | 49282082 | 49290472 | + | lnc_RNA | lncrna |
| 3508 | enst00000670205 | sg00000279249 | ac007614.1-252 | 16 | 49282082 | 49290472 | + | lnc_RNA | lncrna |
| 3513 | enst00000656938 | sg00000279249 | ac007614.1-254 | 16 | 49282087 | 49290454 | + | lnc_RNA | lncrna |
| 3513 | enst00000671636 | sg00000279249 | ac007614.1-253 | 16 | 49282087 | 49290472 | + | lnc_RNA | lncrna |
| 3524 | enst00000657271 | sg00000279249 | ac007614.1-256 | 16 | 49282098 | 49290472 | + | lnc_RNA | lncrna |
| 3524 | enst00000564048 | sg00000279249 | ac007614.1-255 | 16 | 49282098 | 49338438 | + | lnc_RNA | lncrna |
| 3527 | enst00000663876 | sg00000279249 | ac007614.1-257 | 16 | 49282101 | 49293813 | + | lnc_RNA | lncrna |
| 3528 | enst00000669496 | sg00000279249 | ac007614.1-258 | 16 | 49282102 | 49349367 | + | lnc_RNA | lncrna |
| 3532 | enst00000653054 | sg00000279249 | ac007614.1-259 | 16 | 49282106 | 49331220 | + | lnc_RNA | lncrna |
| 3533 | enst00000658470 | sg00000279249 | ac007614.1-260 | 16 | 49282107 | 49290472 | + | lnc_RNA | lncrna |
| 3533 | enst00000669786 | sg00000279249 | ac007614.1-261 | 16 | 49282107 | 49290472 | + | lnc_RNA | lncrna |
| 3546 | enst00000662695 | sg00000279249 | ac007614.1-262 | 16 | 49282120 | 49290472 | + | lnc_RNA | lncrna |
| 3557 | enst00000665128 | sg00000279249 | ac007614.1-263 | 16 | 49282131 | 49349106 | + | lnc_RNA | lncrna |
| 3563 | enst00000654122 | sg00000279249 | ac007614.1-264 | 16 | 49282137 | 49338399 | + | lnc_RNA | lncrna |
| 3569 | enst00000659163 | sg00000279249 | ac007614.1-265 | 16 | 49282143 | 49290472 | + | lnc_RNA | lncrna |
| 3597 | enst00000657569 | sg00000279249 | ac007614.1-266 | 16 | 49282171 | 49349379 | + | lnc_RNA | lncrna |
| 3615 | enst00000660791 | sg00000279249 | ac007614.1-267 | 16 | 49282189 | 49333884 | + | lnc_RNA | lncrna |
| 3638 | enst00000661880 | sg00000279249 | ac007614.1-268 | 16 | 49282212 | 49290423 | + | lnc_RNA | lncrna |
| 5093 | enst00000670042 | sg00000279249 | ac007614.1-269 | 16 | 49283667 | 49290472 | + | lnc_RNA | lncrna |
| 5698 | enst00000662365 | sg00000279249 | ac007614.1-270 | 16 | 49284272 | 49290441 | + | lnc_RNA | lncrna |
| 6908 | enst00000666530 | sg00000279249 | ac007614.1-271 | 16 | 49285482 | 49290472 | + | lnc_RNA | lncrna |
| 6910 | enst00000670027 | sg00000279249 | ac007614.1-272 | 16 | 49285484 | 49290477 | + | lnc_RNA | lncrna |
| 6949 | enst00000655576 | sg00000279249 | ac007614.1-273 | 16 | 49285523 | 49337916 | + | lnc_RNA | lncrna |
| 6956 | enst00000669637 | sg00000279249 | ac007614.1-274 | 16 | 49285530 | 49348877 | + | lnc_RNA | lncrna |
| 8812 | enst00000659313 | sg00000279249 | ac007614.1-275 | 16 | 49287386 | 49349367 | + | lnc_RNA | lncrna |
| 8825 | enst00000564875 | sg00000279249 | ac007614.1-276 | 16 | 49287399 | 49290477 | + | lnc_RNA | lncrna |
| 9258 | enst00000671435 | sg00000279249 | ac007614.1-277 | 16 | 49287832 | 49290477 | + | lnc_RNA | lncrna |
| 10974 | enst00000667688 | sg00000279249 | ac007614.1-278 | 16 | 49289548 | 49337576 | + | lnc_RNA | lncrna |
| 10997 | enst00000653582 | sg00000279249 | ac007614.1-279 | 16 | 49289571 | 49349367 | + | lnc_RNA | lncrna |
| 11045 | enst00000659639 | sg00000279249 | ac007614.1-280 | 16 | 49289619 | 49338241 | + | lnc_RNA | lncrna |
| 18569 | enst00000623729 | sg00000280189 | ac007614.2-201 | 16 | 49297143 | 49299762 | + | unconfirmed_transcript | tec |
| 45526 | enst00000664631 | sg00000279249 | ac007614.1-281 | 16 | 49324100 | 49331550 | + | lnc_RNA | lncrna |
| 51891 | enst00000668453 | sg00000279249 | ac007614.1-282 | 16 | 49330465 | 49348704 | + | lnc_RNA | lncrna |
| 58449 | enst00000668802 | sg00000279249 | ac007614.1-283 | 16 | 49337023 | 49338302 | + | lnc_RNA | lncrna |
| 63516 | enst00000663938 | sg00000279249 | ac007614.1-284 | 16 | 49342090 | 49349367 | + | lnc_RNA | lncrna |
| 95230 | enst00000299191 | sg00000166152 | c16orf78-201 | 16 | 49373804 | 49399431 | + | mRNA | protein_coding |
| -106628 | enst00000564222 | sg00000261815 | ac044798.2-201 | 16 | 49170552 | 49171786 | + | lnc_RNA | lncrna |
| -117672 | enst00000565146 | sg00000261421 | ac044798.1-201 | 16 | 49159508 | 49162023 | + | lnc_RNA | lncrna |
| 175504 | enst00000576671 | sg00000262950 | ac007861.1-201 | 16 | 49442910 | 49454078 | - | lnc_RNA | lncrna |
| 175535 | enst00000654002 | sg00000262950 | ac007861.1-202 | 16 | 49443516 | 49454109 | - | lnc_RNA | lncrna |
| 175655 | enst00000573819 | sg00000263110 | ac007861.2-201 | 16 | 49454229 | 49457269 | + | lnc_RNA | lncrna |
| 187532 | enst00000561523 | sg00000261623 | linc02179-201 | 16 | 49466106 | 49469875 | + | lnc_RNA | lncrna |
| -210451 | enst00000570218 | sg00000260067 | mtnd4lp25-201 | 16 | 49066567 | 49066729 | - | pseudogenic_transcript | processed_pseudogene |
| 240027 | enst00000569937 | sg00000260089 | adam3b-201 | 16 | 49517762 | 49518601 | - | pseudogenic_transcript | processed_pseudogene |
| 362278 | enst00000567169 | sg00000102935 | znf423-207 | 16 | 49490951 | 49640852 | - | mRNA | protein_coding |
| 385651 | enst00000535559 | sg00000102935 | znf423-202 | 16 | 49490787 | 49664225 | - | mRNA | protein_coding |
| -427165 | enst00000569247 | sg00000260184 | ac023827.1-201 | 16 | 48849919 | 48850015 | - | pseudogenic_transcript | processed_pseudogene |
| 429432 | enst00000566937 | sg00000260024 | mrps21p7-201 | 16 | 49708006 | 49708243 | + | pseudogenic_transcript | processed_pseudogene |
| 432699 | enst00000624375 | sg00000280131 | ac027348.2-201 | 16 | 49711273 | 49711914 | + | unconfirmed_transcript | tec |
| 485880 | enst00000569196 | sg00000259978 | mrps21p8-201 | 16 | 49764454 | 49764688 | + | pseudogenic_transcript | processed_pseudogene |
Source file: /hps/research1/birney/users/adrien/analyses/cancer_DNA_promethion/run_1_2_3_4/DNA_pipeline_2/results/methylation/pycometh_meth_comp_CGI_3/out.tsv.gz
MD5 hash: 9aa0e3f69cb4e12345c3758eb68a5efc