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CpG interval report generated on 20/05/20 with pycoMeth 0.4.6
Interval details
| pvalue rank | chromosome | start | end | length | number of samples | number of CpGs | pvalue | adjusted pvalue |
|---|---|---|---|---|---|---|---|---|
| #60 | 15 | 89408959 | 89410257 | 1298 | 3 | 47 | 1.53021e-20 | 2.53632e-18 |
Methylation log-likelihood ratio by CpG position
Distribution of CpG methylation log-likelihood ratio by sample
Closest transcripts TSS
| distance to tss | transcript id | gene id | transcript name | chromosome | start | end | strand | feature type | transcript biotype |
|---|---|---|---|---|---|---|---|---|---|
| -21627 | enst00000671447 | sg00000255571 | mir9-3hg-253 | 15 | 89387332 | 89398484 | + | lnc_RNA | lncrna |
| -22248 | enst00000663717 | sg00000255571 | mir9-3hg-233 | 15 | 89386711 | 89398484 | + | lnc_RNA | lncrna |
| -22495 | enst00000671075 | sg00000255571 | mir9-3hg-252 | 15 | 89386464 | 89398484 | + | lnc_RNA | lncrna |
| -26455 | enst00000664594 | sg00000255571 | mir9-3hg-236 | 15 | 89382504 | 89395351 | + | lnc_RNA | lncrna |
| -26459 | enst00000561037 | sg00000255571 | mir9-3hg-210 | 15 | 89382500 | 89395040 | + | lnc_RNA | lncrna |
| -26462 | enst00000670485 | sg00000255571 | mir9-3hg-250 | 15 | 89382497 | 89395086 | + | lnc_RNA | lncrna |
| -26476 | enst00000662255 | sg00000255571 | mir9-3hg-231 | 15 | 89382483 | 89395350 | + | lnc_RNA | lncrna |
| -26476 | enst00000664345 | sg00000255571 | mir9-3hg-234 | 15 | 89382483 | 89395357 | + | lnc_RNA | lncrna |
| -26485 | enst00000662136 | sg00000255571 | mir9-3hg-229 | 15 | 89382474 | 89396457 | + | lnc_RNA | lncrna |
| -26485 | enst00000664499 | sg00000255571 | mir9-3hg-235 | 15 | 89382474 | 89395362 | + | lnc_RNA | lncrna |
| -26485 | enst00000667575 | sg00000255571 | mir9-3hg-243 | 15 | 89382474 | 89395351 | + | lnc_RNA | lncrna |
| -26485 | enst00000664925 | sg00000255571 | mir9-3hg-237 | 15 | 89382474 | 89395351 | + | lnc_RNA | lncrna |
| -26485 | enst00000655914 | sg00000255571 | mir9-3hg-216 | 15 | 89382474 | 89389522 | + | lnc_RNA | lncrna |
| -29374 | enst00000665086 | sg00000255571 | mir9-3hg-238 | 15 | 89379585 | 89395337 | + | lnc_RNA | lncrna |
| -29627 | enst00000546186 | sg00000255571 | mir9-3hg-203 | 15 | 89379332 | 89396413 | + | lnc_RNA | lncrna |
| -29657 | enst00000670238 | sg00000255571 | mir9-3hg-249 | 15 | 89379302 | 89396466 | + | lnc_RNA | lncrna |
| -29660 | enst00000660922 | sg00000255571 | mir9-3hg-225 | 15 | 89379299 | 89396464 | + | lnc_RNA | lncrna |
| -29697 | enst00000660601 | sg00000255571 | mir9-3hg-224 | 15 | 89379262 | 89396468 | + | lnc_RNA | lncrna |
| -29708 | enst00000669645 | sg00000255571 | mir9-3hg-248 | 15 | 89379251 | 89396463 | + | lnc_RNA | lncrna |
| -29726 | enst00000538734 | sg00000255571 | mir9-3hg-202 | 15 | 89379233 | 89396468 | + | lnc_RNA | lncrna |
| -29835 | enst00000558982 | sg00000255571 | mir9-3hg-206 | 15 | 89379124 | 89395119 | + | lnc_RNA | lncrna |
| -29993 | enst00000669098 | sg00000255571 | mir9-3hg-246 | 15 | 89378966 | 89398484 | + | lnc_RNA | lncrna |
| -30396 | enst00000558754 | sg00000255571 | mir9-3hg-205 | 15 | 89378563 | 89396795 | + | lnc_RNA | lncrna |
| -30990 | enst00000665852 | sg00000255571 | mir9-3hg-240 | 15 | 89377969 | 89395990 | + | lnc_RNA | lncrna |
| -31004 | enst00000558692 | sg00000255571 | mir9-3hg-204 | 15 | 89377955 | 89395351 | + | lnc_RNA | lncrna |
| -31015 | enst00000559235 | sg00000255571 | mir9-3hg-207 | 15 | 89377944 | 89395357 | + | lnc_RNA | lncrna |
| -31015 | enst00000662152 | sg00000255571 | mir9-3hg-230 | 15 | 89377944 | 89389522 | + | lnc_RNA | lncrna |
| -31021 | enst00000665619 | sg00000255571 | mir9-3hg-239 | 15 | 89377938 | 89395359 | + | lnc_RNA | lncrna |
| -31039 | enst00000668524 | sg00000255571 | mir9-3hg-244 | 15 | 89377920 | 89396468 | + | lnc_RNA | lncrna |
| -31220 | enst00000667285 | sg00000255571 | mir9-3hg-242 | 15 | 89377739 | 89396468 | + | lnc_RNA | lncrna |
| -36974 | enst00000560596 | sg00000255571 | mir9-3hg-208 | 15 | 89371985 | 89395350 | + | lnc_RNA | lncrna |
| -37355 | enst00000658770 | sg00000255571 | mir9-3hg-221 | 15 | 89371604 | 89398484 | + | lnc_RNA | lncrna |
| -37356 | enst00000666816 | sg00000255571 | mir9-3hg-241 | 15 | 89371603 | 89398484 | + | lnc_RNA | lncrna |
| -39804 | enst00000560663 | sg00000255571 | mir9-3hg-209 | 15 | 89369155 | 89387843 | + | lnc_RNA | lncrna |
| -39834 | enst00000669037 | sg00000255571 | mir9-3hg-245 | 15 | 89369125 | 89395359 | + | lnc_RNA | lncrna |
| -39838 | enst00000662043 | sg00000255571 | mir9-3hg-228 | 15 | 89369121 | 89395998 | + | lnc_RNA | lncrna |
| -39838 | enst00000662942 | sg00000255571 | mir9-3hg-232 | 15 | 89369121 | 89395350 | + | lnc_RNA | lncrna |
| -39845 | enst00000659850 | sg00000255571 | mir9-3hg-223 | 15 | 89369114 | 89395350 | + | lnc_RNA | lncrna |
| -39856 | enst00000656907 | sg00000255571 | mir9-3hg-217 | 15 | 89369103 | 89395349 | + | lnc_RNA | lncrna |
| -39860 | enst00000655673 | sg00000255571 | mir9-3hg-215 | 15 | 89369099 | 89395350 | + | lnc_RNA | lncrna |
| -40747 | enst00000658764 | sg00000255571 | mir9-3hg-220 | 15 | 89368212 | 89398484 | + | lnc_RNA | lncrna |
| -40818 | enst00000670779 | sg00000255571 | mir9-3hg-251 | 15 | 89368141 | 89398487 | + | lnc_RNA | lncrna |
| -40877 | enst00000654079 | sg00000255571 | mir9-3hg-212 | 15 | 89368082 | 89398484 | + | lnc_RNA | lncrna |
| -40942 | enst00000385084 | sg00000284329 | mir9-3-201 | 15 | 89368017 | 89368106 | + | miRNA | mirna |
| -46273 | enst00000669499 | sg00000255571 | mir9-3hg-247 | 15 | 89362686 | 89398484 | + | lnc_RNA | lncrna |
| -46297 | enst00000659235 | sg00000255571 | mir9-3hg-222 | 15 | 89362662 | 89398484 | + | lnc_RNA | lncrna |
| -46442 | enst00000661036 | sg00000255571 | mir9-3hg-226 | 15 | 89362517 | 89398484 | + | lnc_RNA | lncrna |
| -46443 | enst00000658194 | sg00000255571 | mir9-3hg-219 | 15 | 89362516 | 89398484 | + | lnc_RNA | lncrna |
| -46450 | enst00000654184 | sg00000255571 | mir9-3hg-214 | 15 | 89362509 | 89398485 | + | lnc_RNA | lncrna |
| -46450 | enst00000661040 | sg00000255571 | mir9-3hg-227 | 15 | 89362509 | 89398484 | + | lnc_RNA | lncrna |
| -46450 | enst00000657897 | sg00000255571 | mir9-3hg-218 | 15 | 89362509 | 89398484 | + | lnc_RNA | lncrna |
| -46472 | enst00000561327 | sg00000255571 | mir9-3hg-211 | 15 | 89362487 | 89395331 | + | lnc_RNA | lncrna |
| -46485 | enst00000654171 | sg00000255571 | mir9-3hg-213 | 15 | 89362474 | 89398485 | + | lnc_RNA | lncrna |
| -46538 | enst00000664970 | sg00000287717 | ac133637.2-201 | 15 | 89361157 | 89362421 | - | lnc_RNA | lncrna |
| -47380 | enst00000536780 | sg00000255571 | mir9-3hg-201 | 15 | 89361579 | 89398487 | + | lnc_RNA | lncrna |
| -50118 | enst00000624115 | sg00000279708 | ac133637.1-201 | 15 | 89358841 | 89360377 | + | unconfirmed_transcript | tec |
| 69173 | enst00000558360 | sg00000140519 | rhcg-204 | 15 | 89471445 | 89479430 | - | mRNA | protein_coding |
| 69479 | enst00000559638 | sg00000140519 | rhcg-205 | 15 | 89477799 | 89479736 | - | lnc_RNA | retained_intron |
| -73688 | enst00000562356 | sg00000261441 | ac124068.2-202 | 15 | 89335271 | 89336161 | + | lnc_RNA | lncrna |
| -73906 | enst00000569473 | sg00000261441 | ac124068.2-201 | 15 | 89335053 | 89336161 | + | lnc_RNA | lncrna |
| -74098 | enst00000442287 | sg00000140521 | polg-202 | 15 | 89316320 | 89334861 | - | mRNA | protein_coding |
| -74135 | enst00000636774 | sg00000140521 | polg-217 | 15 | 89316684 | 89334824 | - | mRNA | nonsense_mediated_decay |
| -74142 | enst00000631044 | sg00000140521 | polg-213 | 15 | 89316305 | 89334817 | - | mRNA | nonsense_mediated_decay |
| -74164 | enst00000268124 | sg00000140521 | polg-201 | 15 | 89316305 | 89334795 | - | mRNA | protein_coding |
| -74248 | enst00000635986 | sg00000140521 | polg-215 | 15 | 89316339 | 89334711 | - | mRNA | nonsense_mediated_decay |
| -74248 | enst00000672071 | sg00000140521 | polg-228 | 15 | 89316355 | 89334711 | - | lnc_RNA | retained_intron |
| -74515 | enst00000637711 | sg00000140521 | polg-224 | 15 | 89333850 | 89334444 | - | lnc_RNA | processed_transcript |
| -74946 | enst00000636937 | sg00000140521 | polg-219 | 15 | 89333793 | 89334013 | - | lnc_RNA | processed_transcript |
| -75150 | enst00000650303 | sg00000140521 | polg-225 | 15 | 89330208 | 89333809 | - | mRNA | protein_coding |
| -75548 | enst00000666746 | sg00000140521 | polg-226 | 15 | 89316350 | 89333411 | - | mRNA | nonsense_mediated_decay |
| -75604 | enst00000530292 | sg00000140521 | polg-208 | 15 | 89316328 | 89333355 | - | mRNA | nonsense_mediated_decay |
| -75815 | enst00000637307 | sg00000140521 | polg-223 | 15 | 89330211 | 89333144 | - | mRNA | protein_coding |
| -79922 | enst00000637264 | sg00000140521 | polg-222 | 15 | 89316330 | 89329037 | - | mRNA | protein_coding |
| -80247 | enst00000532363 | sg00000140521 | polg-210 | 15 | 89327013 | 89328712 | - | lnc_RNA | retained_intron |
| -81466 | enst00000672923 | sg00000140521 | polg-230 | 15 | 89316341 | 89327493 | - | lnc_RNA | processed_transcript |
| -81623 | enst00000637238 | sg00000140521 | polg-221 | 15 | 89316357 | 89327336 | - | mRNA | nonsense_mediated_decay |
| -82149 | enst00000622641 | sg00000275101 | mir6766-201 | 15 | 89326739 | 89326810 | - | miRNA | mirna |
| -82254 | enst00000526314 | sg00000140521 | polg-203 | 15 | 89322742 | 89326705 | - | mRNA | protein_coding |
| -82316 | enst00000670281 | sg00000140521 | polg-227 | 15 | 89319292 | 89326643 | - | mRNA | protein_coding |
| -83359 | enst00000532584 | sg00000140521 | polg-211 | 15 | 89321775 | 89325600 | - | lnc_RNA | retained_intron |
| -83372 | enst00000526398 | sg00000140521 | polg-204 | 15 | 89322805 | 89325587 | - | mRNA | nonsense_mediated_decay |
| -83475 | enst00000526573 | sg00000140521 | polg-205 | 15 | 89323514 | 89325484 | - | lnc_RNA | retained_intron |
| -84668 | enst00000533857 | sg00000140521 | polg-212 | 15 | 89323520 | 89324291 | - | lnc_RNA | retained_intron |
| -85522 | enst00000528881 | sg00000140521 | polg-207 | 15 | 89320820 | 89323437 | - | mRNA | nonsense_mediated_decay |
| -85532 | enst00000530715 | sg00000140521 | polg-209 | 15 | 89319268 | 89323427 | - | mRNA | nonsense_mediated_decay |
| 86314 | enst00000560081 | sg00000140519 | rhcg-206 | 15 | 89471398 | 89496571 | - | mRNA | nonsense_mediated_decay |
| 86325 | enst00000558030 | sg00000140519 | rhcg-202 | 15 | 89471757 | 89496582 | - | mRNA | nonsense_mediated_decay |
| 86326 | enst00000649642 | sg00000140519 | rhcg-207 | 15 | 89471424 | 89496583 | - | mRNA | nonsense_mediated_decay |
| 86326 | enst00000268122 | sg00000140519 | rhcg-201 | 15 | 89471407 | 89496583 | - | mRNA | protein_coding |
| 86332 | enst00000558184 | sg00000140519 | rhcg-203 | 15 | 89477728 | 89496589 | - | mRNA | nonsense_mediated_decay |
| -88036 | enst00000672695 | sg00000140521 | polg-229 | 15 | 89316320 | 89320923 | - | lnc_RNA | processed_transcript |
| -88158 | enst00000636812 | sg00000140521 | polg-218 | 15 | 89319338 | 89320801 | - | mRNA | protein_coding |
| -89580 | enst00000636530 | sg00000140521 | polg-216 | 15 | 89319064 | 89319379 | - | lnc_RNA | processed_transcript |
| -90950 | enst00000637042 | sg00000140521 | polg-220 | 15 | 89317443 | 89318009 | - | lnc_RNA | processed_transcript |
| -91131 | enst00000526671 | sg00000140521 | polg-206 | 15 | 89316517 | 89317828 | - | lnc_RNA | retained_intron |
| -92181 | enst00000635831 | sg00000140521 | polg-214 | 15 | 89305198 | 89316778 | - | mRNA | protein_coding |
| 98704 | enst00000567484 | sg00000261478 | ac013391.3-201 | 15 | 89508961 | 89510416 | + | lnc_RNA | lncrna |
| -101100 | enst00000566615 | sg00000140525 | fanci-211 | 15 | 89307859 | 89316426 | + | lnc_RNA | processed_transcript |
| 108266 | enst00000559041 | sg00000259713 | ac013391.2-201 | 15 | 89518523 | 89591956 | + | lnc_RNA | lncrna |
| 113759 | enst00000559227 | sg00000259218 | linc00928-201 | 15 | 89514588 | 89524016 | - | lnc_RNA | lncrna |
| 113769 | enst00000559967 | sg00000259218 | linc00928-202 | 15 | 89504925 | 89524026 | - | lnc_RNA | lncrna |
| 113777 | enst00000561201 | sg00000259218 | linc00928-204 | 15 | 89505277 | 89524034 | - | lnc_RNA | lncrna |
| 113780 | enst00000660770 | sg00000259218 | linc00928-205 | 15 | 89504927 | 89524037 | - | lnc_RNA | lncrna |
| 113792 | enst00000661183 | sg00000259218 | linc00928-206 | 15 | 89516581 | 89524049 | - | lnc_RNA | lncrna |
| 113792 | enst00000561108 | sg00000259218 | linc00928-203 | 15 | 89504909 | 89524049 | - | lnc_RNA | lncrna |
| -125966 | enst00000564350 | sg00000140525 | fanci-206 | 15 | 89282993 | 89290592 | + | lnc_RNA | retained_intron |
| -130272 | enst00000566895 | sg00000140525 | fanci-212 | 15 | 89278687 | 89317128 | + | lnc_RNA | retained_intron |
| -145522 | enst00000561894 | sg00000140525 | fanci-204 | 15 | 89263437 | 89316444 | + | mRNA | protein_coding |
| -147121 | enst00000570225 | sg00000140525 | fanci-217 | 15 | 89261838 | 89268631 | + | mRNA | protein_coding |
| -161357 | enst00000564636 | sg00000140525 | fanci-207 | 15 | 89247602 | 89259350 | + | lnc_RNA | retained_intron |
| -164709 | enst00000565522 | sg00000140525 | fanci-210 | 15 | 89244250 | 89314646 | + | lnc_RNA | processed_transcript |
| -164925 | enst00000563250 | sg00000140525 | fanci-205 | 15 | 89244034 | 89264004 | + | mRNA | protein_coding |
| -164942 | enst00000567996 | sg00000140525 | fanci-214 | 15 | 89244017 | 89264651 | + | mRNA | protein_coding |
| -164951 | enst00000570110 | sg00000140525 | fanci-216 | 15 | 89244008 | 89259068 | + | lnc_RNA | retained_intron |
| -164955 | enst00000447611 | sg00000140525 | fanci-203 | 15 | 89244004 | 89316481 | + | mRNA | nonsense_mediated_decay |
| -164969 | enst00000564920 | sg00000140525 | fanci-208 | 15 | 89243990 | 89261673 | + | mRNA | protein_coding |
| -164969 | enst00000565255 | sg00000140525 | fanci-209 | 15 | 89243990 | 89264037 | + | mRNA | protein_coding |
| -164984 | enst00000567891 | sg00000140525 | fanci-213 | 15 | 89243975 | 89261847 | + | mRNA | protein_coding |
| -164986 | enst00000568670 | sg00000140525 | fanci-215 | 15 | 89243973 | 89260765 | + | lnc_RNA | processed_transcript |
| -164992 | enst00000310775 | sg00000140525 | fanci-202 | 15 | 89243967 | 89317129 | + | mRNA | protein_coding |
| -165010 | enst00000300027 | sg00000140525 | fanci-201 | 15 | 89243949 | 89317261 | + | mRNA | protein_coding |
| 165212 | enst00000268138 | sg00000140534 | ticrr-201 | 15 | 89575469 | 89628023 | + | mRNA | protein_coding |
| 165330 | enst00000560985 | sg00000140534 | ticrr-202 | 15 | 89575587 | 89628012 | + | mRNA | protein_coding |
| 172040 | enst00000560477 | sg00000259615 | ac013391.1-201 | 15 | 89579765 | 89582297 | - | lnc_RNA | lncrna |
| -187345 | enst00000567787 | sg00000140522 | rlbp1-204 | 15 | 89210750 | 89221614 | - | mRNA | nonsense_mediated_decay |
| -187354 | enst00000564388 | sg00000140522 | rlbp1-203 | 15 | 89219562 | 89221605 | - | lnc_RNA | retained_intron |
| -187380 | enst00000268125 | sg00000140522 | rlbp1-201 | 15 | 89209869 | 89221579 | - | mRNA | protein_coding |
| -197116 | enst00000563254 | sg00000140522 | rlbp1-202 | 15 | 89210002 | 89211843 | - | mRNA | protein_coding |
| -207191 | enst00000563131 | sg00000259948 | ac124068.1-201 | 15 | 89201091 | 89201768 | - | pseudogenic_transcript | processed_pseudogene |
| 215143 | enst00000561095 | sg00000140534 | ticrr-203 | 15 | 89625400 | 89631056 | + | mRNA | nonsense_mediated_decay |
| 218523 | enst00000558928 | sg00000166813 | kif7-203 | 15 | 89608789 | 89628780 | - | lnc_RNA | processed_transcript |
| -223544 | enst00000568308 | sg00000140526 | abhd2-208 | 15 | 89185415 | 89193453 | + | lnc_RNA | retained_intron |
| 245194 | enst00000445906 | sg00000166813 | kif7-202 | 15 | 89648503 | 89655451 | - | mRNA | nonsense_mediated_decay |
| 245210 | enst00000394412 | sg00000166813 | kif7-201 | 15 | 89627977 | 89655467 | - | mRNA | protein_coding |
| 257383 | enst00000560330 | sg00000166819 | plin1-204 | 15 | 89664367 | 89667640 | - | mRNA | protein_coding |
| 269110 | enst00000300055 | sg00000166819 | plin1-201 | 15 | 89664367 | 89679367 | - | mRNA | protein_coding |
| 269160 | enst00000531697 | sg00000166819 | plin1-203 | 15 | 89676626 | 89679417 | - | lnc_RNA | retained_intron |
| 269170 | enst00000430628 | sg00000166819 | plin1-202 | 15 | 89664372 | 89679427 | - | mRNA | protein_coding |
| -272464 | enst00000558211 | sg00000259699 | hmgb1p8-201 | 15 | 89135547 | 89136495 | - | pseudogenic_transcript | processed_pseudogene |
| 277986 | enst00000460165 | sg00000241362 | rpl36ap43-201 | 15 | 89687937 | 89688243 | - | pseudogenic_transcript | processed_pseudogene |
| 280405 | enst00000561257 | sg00000166821 | pex11a-205 | 15 | 89683080 | 89690662 | - | mRNA | protein_coding |
| 280496 | enst00000561224 | sg00000166821 | pex11a-204 | 15 | 89681305 | 89690753 | - | mRNA | protein_coding |
| 280497 | enst00000300056 | sg00000166821 | pex11a-201 | 15 | 89681535 | 89690754 | - | mRNA | protein_coding |
| 280525 | enst00000557982 | sg00000166821 | pex11a-202 | 15 | 89677764 | 89690782 | - | lnc_RNA | processed_transcript |
| 280526 | enst00000559170 | sg00000166821 | pex11a-203 | 15 | 89683251 | 89690783 | - | mRNA | protein_coding |
| 280554 | enst00000268130 | sg00000140527 | wdr93-201 | 15 | 89690811 | 89743638 | + | mRNA | protein_coding |
| 280572 | enst00000560294 | sg00000140527 | wdr93-205 | 15 | 89690829 | 89743638 | + | mRNA | protein_coding |
| 280587 | enst00000558000 | sg00000140527 | wdr93-204 | 15 | 89690844 | 89704478 | + | mRNA | protein_coding |
| -288180 | enst00000458793 | sg00000239151 | rnu7-195p-201 | 15 | 89120779 | 89120840 | + | snRNA | snrna |
| -292455 | enst00000562073 | sg00000140526 | abhd2-202 | 15 | 89116504 | 89183373 | + | lnc_RNA | processed_transcript |
| 294408 | enst00000557964 | sg00000259561 | ac079075.1-201 | 15 | 89704665 | 89705415 | + | lnc_RNA | lncrna |
| 303975 | enst00000383863 | sg00000206590 | rnu6-132p-201 | 15 | 89714232 | 89714338 | + | snRNA | snrna |
| 309349 | enst00000557825 | sg00000140527 | wdr93-203 | 15 | 89719606 | 89729730 | + | lnc_RNA | processed_transcript |
| 310853 | enst00000444934 | sg00000140527 | wdr93-202 | 15 | 89721110 | 89743637 | + | lnc_RNA | processed_transcript |
| -320449 | enst00000562254 | sg00000140526 | abhd2-203 | 15 | 89088510 | 89094364 | + | lnc_RNA | processed_transcript |
| -320477 | enst00000565825 | sg00000140526 | abhd2-206 | 15 | 89088482 | 89113791 | + | lnc_RNA | processed_transcript |
| -320503 | enst00000352732 | sg00000140526 | abhd2-201 | 15 | 89088456 | 89202355 | + | mRNA | protein_coding |
| -320529 | enst00000565973 | sg00000140526 | abhd2-207 | 15 | 89088430 | 89195751 | + | mRNA | protein_coding |
| -320533 | enst00000565066 | sg00000140526 | abhd2-205 | 15 | 89088426 | 89151852 | + | mRNA | protein_coding |
| -320537 | enst00000564876 | sg00000140526 | abhd2-204 | 15 | 89088422 | 89113816 | + | lnc_RNA | processed_transcript |
| -320537 | enst00000569550 | sg00000140526 | abhd2-210 | 15 | 89088422 | 89116494 | + | mRNA | protein_coding |
| -320582 | enst00000671490 | sg00000261407 | ac013565.3-202 | 15 | 89087561 | 89088377 | - | lnc_RNA | lncrna |
| -320692 | enst00000570120 | sg00000261407 | ac013565.3-203 | 15 | 89087563 | 89088267 | - | lnc_RNA | lncrna |
| -321018 | enst00000565547 | sg00000261407 | ac013565.3-201 | 15 | 89087078 | 89087941 | - | lnc_RNA | lncrna |
| -321500 | enst00000569411 | sg00000140526 | abhd2-209 | 15 | 89087459 | 89155390 | + | mRNA | protein_coding |
| 340880 | enst00000559894 | sg00000166823 | mesp1-202 | 15 | 89749891 | 89751137 | - | lnc_RNA | processed_transcript |
| 341053 | enst00000300057 | sg00000166823 | mesp1-201 | 15 | 89748661 | 89751310 | - | mRNA | protein_coding |
| 342039 | enst00000559543 | sg00000259441 | mrpl15p1-201 | 15 | 89752296 | 89753493 | + | pseudogenic_transcript | processed_pseudogene |
| 350334 | enst00000560219 | sg00000188095 | mesp2-203 | 15 | 89760591 | 89778754 | + | mRNA | protein_coding |
| 350344 | enst00000558723 | sg00000188095 | mesp2-202 | 15 | 89760601 | 89778674 | + | lnc_RNA | processed_transcript |
| 366075 | enst00000341735 | sg00000188095 | mesp2-201 | 15 | 89776332 | 89778754 | + | mRNA | protein_coding |
| -367685 | enst00000668304 | sg00000260123 | ac013565.1-202 | 15 | 89041274 | 89077215 | + | lnc_RNA | lncrna |
| -367736 | enst00000565938 | sg00000260123 | ac013565.1-201 | 15 | 89041223 | 89082819 | + | lnc_RNA | lncrna |
| -370673 | enst00000564874 | sg00000260275 | ac013565.2-201 | 15 | 89037977 | 89038286 | - | pseudogenic_transcript | processed_pseudogene |
| 382930 | enst00000558740 | sg00000166825 | anpep-203 | 15 | 89790953 | 89793187 | - | lnc_RNA | retained_intron |
| 389303 | enst00000559761 | sg00000166825 | anpep-204 | 15 | 89797445 | 89799560 | - | lnc_RNA | retained_intron |
| 392479 | enst00000558177 | sg00000166825 | anpep-202 | 15 | 89797575 | 89802736 | - | lnc_RNA | processed_transcript |
| 393712 | enst00000560030 | sg00000166825 | anpep-208 | 15 | 89797659 | 89803969 | - | mRNA | nonsense_mediated_decay |
| 394594 | enst00000559887 | sg00000166825 | anpep-206 | 15 | 89803985 | 89804851 | - | lnc_RNA | retained_intron |
| 395115 | enst00000560028 | sg00000166825 | anpep-207 | 15 | 89804277 | 89805372 | - | mRNA | nonsense_mediated_decay |
| 404595 | enst00000300060 | sg00000166825 | anpep-201 | 15 | 89784895 | 89814852 | - | mRNA | protein_coding |
| 404607 | enst00000560137 | sg00000166825 | anpep-209 | 15 | 89806401 | 89814864 | - | mRNA | protein_coding |
| 405144 | enst00000559874 | sg00000166825 | anpep-205 | 15 | 89806273 | 89815401 | - | mRNA | protein_coding |
| -418714 | enst00000565906 | sg00000261549 | ac107954.1-201 | 15 | 88989519 | 88990245 | - | pseudogenic_transcript | processed_pseudogene |
| 427697 | enst00000558926 | sg00000157823 | ap3s2-207 | 15 | 89835424 | 89837954 | - | lnc_RNA | retained_intron |
| 435517 | enst00000560771 | sg00000157823 | ap3s2-213 | 15 | 89835566 | 89845774 | - | lnc_RNA | processed_transcript |
| 438750 | enst00000561410 | sg00000157823 | ap3s2-215 | 15 | 89835597 | 89849007 | - | lnc_RNA | processed_transcript |
| 440464 | enst00000578766 | sg00000264966 | mir5094-201 | 15 | 89850637 | 89850721 | - | miRNA | mirna |
| 442399 | enst00000558186 | sg00000157823 | ap3s2-205 | 15 | 89837618 | 89852656 | - | lnc_RNA | processed_transcript |
| -448889 | enst00000561341 | sg00000259489 | krt18p47-201 | 15 | 88960070 | 88961046 | + | pseudogenic_transcript | processed_pseudogene |
| -456276 | enst00000559344 | sg00000259350 | ac067805.1-201 | 15 | 88952683 | 88953460 | + | pseudogenic_transcript | processed_pseudogene |
| 466283 | enst00000559166 | sg00000259677 | ac027176.2-201 | 15 | 89876540 | 89877285 | + | pseudogenic_transcript | processed_pseudogene |
| 473773 | enst00000578736 | sg00000264796 | mir5009-201 | 15 | 89883931 | 89884030 | - | miRNA | mirna |
| 476334 | enst00000391118 | sg00000212420 | rnu6-1111p-201 | 15 | 89886485 | 89886591 | - | snRNA | snrna |
| 478396 | enst00000559162 | sg00000157823 | ap3s2-209 | 15 | 89835600 | 89888653 | - | lnc_RNA | retained_intron |
| 479222 | enst00000559601 | sg00000157823 | ap3s2-210 | 15 | 89888521 | 89889479 | - | lnc_RNA | retained_intron |
| 483713 | enst00000560184 | sg00000157823 | ap3s2-211 | 15 | 89865459 | 89893970 | - | lnc_RNA | processed_transcript |
| 483720 | enst00000423566 | sg00000157823 | ap3s2-202 | 15 | 89834982 | 89893977 | - | mRNA | nonsense_mediated_decay |
| 483720 | enst00000560251 | sg00000157823 | ap3s2-212 | 15 | 89865613 | 89893977 | - | mRNA | nonsense_mediated_decay |
| 483724 | enst00000560940 | sg00000157823 | ap3s2-214 | 15 | 89835480 | 89893981 | - | mRNA | protein_coding |
| 483737 | enst00000558999 | sg00000157823 | ap3s2-208 | 15 | 89837615 | 89893994 | - | mRNA | nonsense_mediated_decay |
| 483737 | enst00000336418 | sg00000157823 | ap3s2-201 | 15 | 89830599 | 89893994 | - | mRNA | protein_coding |
| 483737 | enst00000558011 | sg00000157823 | ap3s2-204 | 15 | 89835440 | 89893994 | - | mRNA | protein_coding |
| 483737 | enst00000557999 | sg00000157823 | ap3s2-203 | 15 | 89835568 | 89893994 | - | mRNA | nonsense_mediated_decay |
| 483771 | enst00000558806 | sg00000157823 | ap3s2-206 | 15 | 89835594 | 89894028 | - | mRNA | nonsense_mediated_decay |
| 484381 | enst00000617003 | sg00000157823 | ap3s2-216 | 15 | 89893078 | 89894638 | - | mRNA | protein_coding |
| 487319 | enst00000516836 | sg00000252645 | rnu7-111p-201 | 15 | 89897576 | 89897637 | + | snRNA | snrna |
| 493108 | enst00000560224 | sg00000250021 | arpin-ap3s2-204 | 15 | 89865461 | 89903365 | - | lnc_RNA | processed_transcript |
| 493686 | enst00000560096 | sg00000242498 | arpin-203 | 15 | 89902849 | 89903943 | - | mRNA | protein_coding |
| -495578 | enst00000566497 | sg00000140545 | mfge8-215 | 15 | 88898715 | 88913381 | - | mRNA | protein_coding |
| -495578 | enst00000268151 | sg00000140545 | mfge8-202 | 15 | 88898713 | 88913381 | - | mRNA | protein_coding |
| -495580 | enst00000558352 | sg00000140545 | mfge8-207 | 15 | 88906063 | 88913379 | - | lnc_RNA | retained_intron |
| -495580 | enst00000559997 | sg00000140545 | mfge8-212 | 15 | 88905399 | 88913379 | - | lnc_RNA | processed_transcript |
| -495580 | enst00000542878 | sg00000140545 | mfge8-203 | 15 | 88899315 | 88913379 | - | mRNA | protein_coding |
| -495580 | enst00000558018 | sg00000140545 | mfge8-205 | 15 | 88898683 | 88913379 | - | mRNA | nonsense_mediated_decay |
| -495580 | enst00000268150 | sg00000140545 | mfge8-201 | 15 | 88898683 | 88913379 | - | mRNA | protein_coding |
| -495597 | enst00000558029 | sg00000140545 | mfge8-206 | 15 | 88901551 | 88913362 | - | mRNA | protein_coding |
| -495597 | enst00000557944 | sg00000140545 | mfge8-204 | 15 | 88910780 | 88913362 | - | lnc_RNA | retained_intron |
| -495642 | enst00000558773 | sg00000140545 | mfge8-208 | 15 | 88910204 | 88913317 | - | lnc_RNA | retained_intron |
| 498142 | enst00000558648 | sg00000250021 | arpin-ap3s2-202 | 15 | 89837622 | 89908399 | - | mRNA | protein_coding |
| 498156 | enst00000559629 | sg00000250021 | arpin-ap3s2-203 | 15 | 89837622 | 89908413 | - | mRNA | protein_coding |
| -498702 | enst00000559143 | sg00000140545 | mfge8-209 | 15 | 88909792 | 88910257 | - | lnc_RNA | retained_intron |
| -498834 | enst00000559770 | sg00000140545 | mfge8-211 | 15 | 88906615 | 88910125 | - | lnc_RNA | retained_intron |
Source file: /hps/research1/birney/users/adrien/analyses/cancer_DNA_promethion/run_1_2_3_4/DNA_pipeline_2/results/methylation/pycometh_meth_comp_CGI_3/out.tsv.gz
MD5 hash: 9aa0e3f69cb4e12345c3758eb68a5efc