CpG interval report generated on 20/05/20 with pycoMeth 0.4.6

Interval details
pvalue rank chromosome start end length number of samples number of CpGs pvalue adjusted pvalue
#57 2 154698540 154699822 1282 3 49 7.29157e-21 1.27219e-18
Methylation log-likelihood ratio by CpG position
Distribution of CpG methylation log-likelihood ratio by sample
Closest transcripts TSS
distance to tss transcript id gene id transcript name chromosome start end strand feature type transcript biotype
0 enst00000544049 sg00000162989 kcnj3-203 2 154698581 154858352 + mRNA protein_coding
0 enst00000295101 sg00000162989 kcnj3-201 2 154698695 154858354 + mRNA protein_coding
-685 enst00000651198 sg00000162989 kcnj3-204 2 154697855 154857873 + mRNA protein_coding
-723 enst00000443901 sg00000287900 ac061961.1-201 2 154696462 154697817 - lnc_RNA lncrna
-833 enst00000654516 sg00000287900 ac061961.1-202 2 154688296 154697707 - lnc_RNA lncrna
-3603 enst00000662205 sg00000287900 ac061961.1-203 2 154689392 154694937 - lnc_RNA lncrna
9510 enst00000493505 sg00000162989 kcnj3-202 2 154709332 154855028 + lnc_RNA processed_transcript
-108133 enst00000411358 sg00000223290 rna5sp107-201 2 154590407 154590528 + pseudogenic_transcript rrna_pseudogene
-238683 enst00000432599 sg00000238004 ac009227.2-201 2 154459857 154460820 + lnc_RNA lncrna
-241102 enst00000434635 sg00000224675 ac009227.1-201 2 154435853 154457438 - lnc_RNA lncrna
241245 enst00000430257 sg00000228837 cbx3p6-201 2 154940541 154941067 - pseudogenic_transcript processed_pseudogene
-252062 enst00000494805 sg00000144278 galnt13-210 2 154446478 154450694 + lnc_RNA retained_intron
-256819 enst00000489553 sg00000144278 galnt13-209 2 154441721 154450801 + lnc_RNA processed_transcript
-259948 enst00000453715 sg00000144278 galnt13-207 2 154438592 154450745 + mRNA protein_coding
269279 enst00000442706 sg00000230991 ac092625.1-201 2 154964308 154969101 - lnc_RNA lncrna
-289529 enst00000422126 sg00000144278 galnt13-203 2 154409011 154450793 + mRNA protein_coding
389716 enst00000411265 sg00000223197 rnu6-1001p-201 2 155089439 155089538 - snRNA snrna
-396961 enst00000450838 sg00000144278 galnt13-206 2 154301579 154450730 + mRNA protein_coding
-411951 enst00000437447 sg00000230251 phbp4-201 2 154286589 154287425 + pseudogenic_transcript processed_pseudogene
-440973 enst00000487047 sg00000144278 galnt13-208 2 154257567 154438676 + lnc_RNA processed_transcript

Source file: /hps/research1/birney/users/adrien/analyses/cancer_DNA_promethion/run_1_2_3_4/DNA_pipeline_2/results/methylation/pycometh_meth_comp_CGI_3/out.tsv.gz

MD5 hash: 9aa0e3f69cb4e12345c3758eb68a5efc