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CpG interval report generated on 20/05/20 with pycoMeth 0.4.6
Interval details
| pvalue rank | chromosome | start | end | length | number of samples | number of CpGs | pvalue | adjusted pvalue |
|---|---|---|---|---|---|---|---|---|
| #50 | X | 48826215 | 48827761 | 1546 | 3 | 60 | 1.8822e-21 | 3.74369e-19 |
Methylation log-likelihood ratio by CpG position
Distribution of CpG methylation log-likelihood ratio by sample
Closest transcripts TSS
| distance to tss | transcript id | gene id | transcript name | chromosome | start | end | strand | feature type | transcript biotype |
|---|---|---|---|---|---|---|---|---|---|
| 0 | enst00000636362 | sg00000187682 | eras-202 | X | 48826513 | 48829869 | + | mRNA | protein_coding |
| 1112 | enst00000338270 | sg00000187682 | eras-201 | X | 48828873 | 48830138 | + | mRNA | protein_coding |
| -2697 | enst00000430858 | sg00000094631 | hdac6-206 | X | 48823518 | 48824976 | + | mRNA | protein_coding |
| -6768 | enst00000488543 | sg00000094631 | hdac6-228 | X | 48819447 | 48824976 | + | lnc_RNA | retained_intron |
| 7066 | enst00000611033 | sg00000102109 | pcsk1n-202 | X | 48832263 | 48834827 | - | lnc_RNA | processed_transcript |
| 7849 | enst00000218230 | sg00000102109 | pcsk1n-201 | X | 48831096 | 48835610 | - | mRNA | protein_coding |
| -7902 | enst00000498808 | sg00000094631 | hdac6-234 | X | 48818313 | 48823579 | + | lnc_RNA | processed_transcript |
| -8144 | enst00000480525 | sg00000094631 | hdac6-222 | X | 48818071 | 48823109 | + | mRNA | nonsense_mediated_decay |
| -8577 | enst00000489053 | sg00000094631 | hdac6-230 | X | 48817638 | 48818286 | + | lnc_RNA | retained_intron |
| -9255 | enst00000483506 | sg00000094631 | hdac6-223 | X | 48816960 | 48818085 | + | lnc_RNA | retained_intron |
| -9645 | enst00000470942 | sg00000094631 | hdac6-217 | X | 48816570 | 48820203 | + | lnc_RNA | retained_intron |
| -9742 | enst00000486665 | sg00000094631 | hdac6-227 | X | 48816473 | 48820180 | + | mRNA | nonsense_mediated_decay |
| -9745 | enst00000645643 | sg00000094631 | hdac6-241 | X | 48816470 | 48824947 | + | mRNA | nonsense_mediated_decay |
| -10025 | enst00000495515 | sg00000094631 | hdac6-233 | X | 48816190 | 48816953 | + | lnc_RNA | retained_intron |
| -10416 | enst00000465457 | sg00000094631 | hdac6-214 | X | 48815799 | 48817336 | + | lnc_RNA | retained_intron |
| -10935 | enst00000644164 | sg00000094631 | hdac6-240 | X | 48815280 | 48816268 | + | lnc_RNA | processed_transcript |
| -10946 | enst00000488905 | sg00000094631 | hdac6-229 | X | 48815269 | 48815844 | + | lnc_RNA | retained_intron |
| -11450 | enst00000485102 | sg00000094631 | hdac6-225 | X | 48814765 | 48816176 | + | lnc_RNA | retained_intron |
| -11675 | enst00000478095 | sg00000094631 | hdac6-221 | X | 48814540 | 48815428 | + | lnc_RNA | retained_intron |
| -12862 | enst00000486227 | sg00000094631 | hdac6-226 | X | 48813353 | 48824976 | + | lnc_RNA | retained_intron |
| -19606 | enst00000642405 | sg00000094631 | hdac6-235 | X | 48806609 | 48815023 | + | mRNA | protein_coding |
| -19796 | enst00000461608 | sg00000094631 | hdac6-211 | X | 48806419 | 48806959 | + | mRNA | protein_coding |
| -23307 | enst00000493923 | sg00000094631 | hdac6-232 | X | 48802908 | 48803439 | + | lnc_RNA | retained_intron |
| -23327 | enst00000647398 | sg00000094631 | hdac6-243 | X | 48802888 | 48824967 | + | mRNA | nonsense_mediated_decay |
| -23435 | enst00000468949 | sg00000094631 | hdac6-215 | X | 48802780 | 48806648 | + | lnc_RNA | retained_intron |
| -23665 | enst00000440653 | sg00000094631 | hdac6-208 | X | 48802550 | 48806445 | + | mRNA | protein_coding |
| -23700 | enst00000443563 | sg00000094631 | hdac6-210 | X | 48802515 | 48806431 | + | mRNA | protein_coding |
| -24008 | enst00000489352 | sg00000094631 | hdac6-231 | X | 48802207 | 48805846 | + | mRNA | protein_coding |
| -24028 | enst00000643934 | sg00000094631 | hdac6-238 | X | 48802187 | 48824958 | + | mRNA | protein_coding |
| -24029 | enst00000441703 | sg00000094631 | hdac6-209 | X | 48802186 | 48805745 | + | mRNA | protein_coding |
| -24047 | enst00000644068 | sg00000094631 | hdac6-239 | X | 48802168 | 48824976 | + | mRNA | protein_coding |
| -24056 | enst00000643374 | sg00000094631 | hdac6-236 | X | 48802159 | 48824956 | + | mRNA | protein_coding |
| -24082 | enst00000643659 | sg00000094631 | hdac6-237 | X | 48802133 | 48824860 | + | lnc_RNA | processed_transcript |
| -24105 | enst00000477561 | sg00000094631 | hdac6-220 | X | 48802110 | 48808270 | + | lnc_RNA | processed_transcript |
| -24131 | enst00000646703 | sg00000094631 | hdac6-242 | X | 48802084 | 48816011 | + | mRNA | protein_coding |
| -24133 | enst00000476625 | sg00000094631 | hdac6-218 | X | 48802082 | 48806233 | + | mRNA | protein_coding |
| -24148 | enst00000334136 | sg00000094631 | hdac6-201 | X | 48802067 | 48824976 | + | mRNA | protein_coding |
| -24151 | enst00000465269 | sg00000094631 | hdac6-213 | X | 48802064 | 48805855 | + | mRNA | protein_coding |
| -24160 | enst00000477528 | sg00000094631 | hdac6-219 | X | 48802055 | 48824982 | + | lnc_RNA | retained_intron |
| -24181 | enst00000376619 | sg00000094631 | hdac6-203 | X | 48802034 | 48824976 | + | mRNA | protein_coding |
| -24199 | enst00000462730 | sg00000094631 | hdac6-212 | X | 48802016 | 48806946 | + | mRNA | protein_coding |
| -24224 | enst00000483656 | sg00000094631 | hdac6-224 | X | 48801991 | 48808046 | + | lnc_RNA | processed_transcript |
| -24266 | enst00000376610 | sg00000094631 | hdac6-202 | X | 48801949 | 48806706 | + | mRNA | protein_coding |
| -24422 | enst00000469223 | sg00000094631 | hdac6-216 | X | 48801793 | 48808137 | + | lnc_RNA | processed_transcript |
| -24515 | enst00000376643 | sg00000094631 | hdac6-204 | X | 48801700 | 48806706 | + | mRNA | protein_coding |
| -24819 | enst00000438518 | sg00000094631 | hdac6-207 | X | 48801396 | 48802930 | + | mRNA | protein_coding |
| -24838 | enst00000423941 | sg00000094631 | hdac6-205 | X | 48801377 | 48805661 | + | mRNA | protein_coding |
| -39625 | enst00000376670 | sg00000102145 | gata1-202 | X | 48786590 | 48794311 | + | mRNA | protein_coding |
| -39642 | enst00000376665 | sg00000102145 | gata1-201 | X | 48786573 | 48794311 | + | mRNA | protein_coding |
| -39653 | enst00000651144 | sg00000102145 | gata1-203 | X | 48786562 | 48794297 | + | mRNA | protein_coding |
| -49144 | enst00000384637 | sg00000207367 | rnu6-29p-201 | X | 48776965 | 48777071 | - | snRNA | snrna |
| -49245 | enst00000419045 | sg00000233585 | ac231533.2-202 | X | 48775993 | 48776970 | - | pseudogenic_transcript | transcribed_processed_pseudogene |
| -50072 | enst00000646565 | sg00000233585 | ac231533.2-201 | X | 48775644 | 48776143 | - | lnc_RNA | processed_transcript |
| -60343 | enst00000445229 | sg00000171433 | glod5-202 | X | 48765872 | 48773646 | + | mRNA | protein_coding |
| 62436 | enst00000651767 | sg00000102103 | pqbp1-218 | X | 48890197 | 48903105 | + | mRNA | protein_coding |
| -63917 | enst00000470676 | sg00000171433 | glod5-204 | X | 48762298 | 48773648 | + | lnc_RNA | processed_transcript |
| -64464 | enst00000463327 | sg00000171433 | glod5-203 | X | 48761751 | 48766237 | + | lnc_RNA | processed_transcript |
| -64468 | enst00000303227 | sg00000171433 | glod5-201 | X | 48761747 | 48773648 | + | mRNA | protein_coding |
| 69467 | enst00000472645 | sg00000126768 | timm17b-206 | X | 48893554 | 48897228 | - | lnc_RNA | processed_transcript |
| 69986 | enst00000490755 | sg00000126768 | timm17b-207 | X | 48894000 | 48897747 | - | mRNA | protein_coding |
| 70001 | enst00000465150 | sg00000126768 | timm17b-204 | X | 48893447 | 48897762 | - | mRNA | protein_coding |
| 70007 | enst00000464663 | sg00000126768 | timm17b-203 | X | 48896178 | 48897768 | - | lnc_RNA | retained_intron |
| 70010 | enst00000466995 | sg00000126768 | timm17b-205 | X | 48893449 | 48897771 | - | mRNA | nonsense_mediated_decay |
| 70029 | enst00000495490 | sg00000126768 | timm17b-208 | X | 48893453 | 48897790 | - | mRNA | protein_coding |
| 70151 | enst00000376563 | sg00000102103 | pqbp1-203 | X | 48897912 | 48903142 | + | mRNA | protein_coding |
| 70151 | enst00000376566 | sg00000102103 | pqbp1-204 | X | 48897912 | 48903142 | + | mRNA | protein_coding |
| 70170 | enst00000447146 | sg00000102103 | pqbp1-207 | X | 48897931 | 48903136 | + | mRNA | protein_coding |
| 70177 | enst00000473764 | sg00000102103 | pqbp1-214 | X | 48897938 | 48903142 | + | lnc_RNA | processed_transcript |
| 70179 | enst00000247140 | sg00000102103 | pqbp1-202 | X | 48897940 | 48903142 | + | mRNA | protein_coding |
| 70182 | enst00000472742 | sg00000102103 | pqbp1-213 | X | 48897943 | 48902793 | + | lnc_RNA | processed_transcript |
| 70185 | enst00000486150 | sg00000102103 | pqbp1-217 | X | 48897946 | 48901606 | + | lnc_RNA | processed_transcript |
| 70191 | enst00000477997 | sg00000102103 | pqbp1-216 | X | 48897952 | 48903143 | + | lnc_RNA | processed_transcript |
| 70235 | enst00000470062 | sg00000102103 | pqbp1-212 | X | 48897996 | 48903098 | + | lnc_RNA | processed_transcript |
| 70280 | enst00000474671 | sg00000102103 | pqbp1-215 | X | 48898041 | 48903143 | + | lnc_RNA | processed_transcript |
| 70382 | enst00000376582 | sg00000126768 | timm17b-201 | X | 48893447 | 48898143 | - | mRNA | protein_coding |
| 70382 | enst00000396779 | sg00000126768 | timm17b-202 | X | 48893448 | 48898143 | - | mRNA | protein_coding |
| 70492 | enst00000218224 | sg00000102103 | pqbp1-201 | X | 48898253 | 48903142 | + | mRNA | protein_coding |
| 70495 | enst00000396763 | sg00000102103 | pqbp1-205 | X | 48898256 | 48903142 | + | mRNA | protein_coding |
| 70499 | enst00000443648 | sg00000102103 | pqbp1-206 | X | 48898260 | 48902793 | + | mRNA | protein_coding |
| 70557 | enst00000456306 | sg00000102103 | pqbp1-208 | X | 48898318 | 48903056 | + | mRNA | protein_coding |
| 70749 | enst00000470059 | sg00000102103 | pqbp1-211 | X | 48898510 | 48903084 | + | lnc_RNA | processed_transcript |
| 70749 | enst00000465859 | sg00000102103 | pqbp1-210 | X | 48898510 | 48903084 | + | lnc_RNA | processed_transcript |
| 70749 | enst00000463529 | sg00000102103 | pqbp1-209 | X | 48898510 | 48903084 | + | lnc_RNA | processed_transcript |
| 82111 | enst00000413561 | sg00000102100 | slc35a2-206 | X | 48903614 | 48909872 | - | mRNA | protein_coding |
| 83873 | enst00000635460 | sg00000102100 | slc35a2-216 | X | 48903184 | 48911634 | - | mRNA | protein_coding |
| 83885 | enst00000635015 | sg00000102100 | slc35a2-213 | X | 48905859 | 48911646 | - | mRNA | protein_coding |
| 83885 | enst00000635238 | sg00000102100 | slc35a2-214 | X | 48905296 | 48911646 | - | mRNA | protein_coding |
| 83885 | enst00000452555 | sg00000102100 | slc35a2-209 | X | 48904440 | 48911646 | - | mRNA | protein_coding |
| 83885 | enst00000635589 | sg00000102100 | slc35a2-217 | X | 48904312 | 48911646 | - | mRNA | protein_coding |
| 83885 | enst00000634665 | sg00000102100 | slc35a2-212 | X | 48905398 | 48911646 | - | mRNA | protein_coding |
| 83885 | enst00000616181 | sg00000102100 | slc35a2-210 | X | 48904344 | 48911646 | - | mRNA | protein_coding |
| 83885 | enst00000635628 | sg00000102100 | slc35a2-218 | X | 48903184 | 48911646 | - | mRNA | nonsense_mediated_decay |
| 83885 | enst00000376529 | sg00000102100 | slc35a2-205 | X | 48903184 | 48911646 | - | mRNA | protein_coding |
| 83885 | enst00000247138 | sg00000102100 | slc35a2-201 | X | 48903183 | 48911646 | - | mRNA | protein_coding |
| 83890 | enst00000635285 | sg00000102100 | slc35a2-215 | X | 48903180 | 48911651 | - | mRNA | nonsense_mediated_decay |
| 83908 | enst00000445167 | sg00000102100 | slc35a2-207 | X | 48903613 | 48911669 | - | mRNA | protein_coding |
| 83908 | enst00000634461 | sg00000102100 | slc35a2-211 | X | 48906135 | 48911669 | - | mRNA | protein_coding |
| 83916 | enst00000376512 | sg00000102100 | slc35a2-202 | X | 48905956 | 48911677 | - | mRNA | protein_coding |
| 84176 | enst00000446885 | sg00000102100 | slc35a2-208 | X | 48905166 | 48911937 | - | mRNA | protein_coding |
| 84197 | enst00000376515 | sg00000102100 | slc35a2-203 | X | 48904284 | 48911958 | - | mRNA | protein_coding |
| 84197 | enst00000376521 | sg00000102100 | slc35a2-204 | X | 48903184 | 48911958 | - | mRNA | protein_coding |
| 87153 | enst00000485431 | sg00000102096 | pim2-203 | X | 48914104 | 48914914 | - | lnc_RNA | processed_transcript |
| 87974 | enst00000442430 | sg00000102096 | pim2-202 | X | 48914396 | 48915735 | - | mRNA | protein_coding |
| -89052 | enst00000416061 | sg00000232828 | ac231533.1-201 | X | 48698963 | 48737163 | - | lnc_RNA | lncrna |
| 91263 | enst00000376509 | sg00000102096 | pim2-201 | X | 48913182 | 48919024 | - | mRNA | protein_coding |
| -101654 | enst00000383996 | sg00000206723 | rnu6-1056p-201 | X | 48724455 | 48724561 | - | snRNA | snrna |
| 108578 | enst00000481142 | sg00000068308 | otud5-206 | X | 48934582 | 48936339 | - | lnc_RNA | processed_transcript |
| 112231 | enst00000624323 | sg00000279155 | ac233300.1-201 | X | 48939992 | 48940808 | + | unconfirmed_transcript | tec |
| -119912 | enst00000462786 | sg00000101945 | suv39h1-203 | X | 48706303 | 48707857 | + | lnc_RNA | retained_intron |
| -120954 | enst00000482260 | sg00000101945 | suv39h1-204 | X | 48705261 | 48707844 | + | lnc_RNA | processed_transcript |
| 129295 | enst00000484499 | sg00000068308 | otud5-207 | X | 48925934 | 48957056 | - | lnc_RNA | processed_transcript |
| 129428 | enst00000455452 | sg00000068308 | otud5-205 | X | 48922206 | 48957189 | - | mRNA | protein_coding |
| -129620 | enst00000376687 | sg00000101945 | suv39h1-202 | X | 48696595 | 48709012 | + | mRNA | protein_coding |
| 129838 | enst00000376488 | sg00000068308 | otud5-202 | X | 48922212 | 48957599 | - | mRNA | protein_coding |
| 129870 | enst00000396743 | sg00000068308 | otud5-203 | X | 48922028 | 48957631 | - | mRNA | protein_coding |
| 129870 | enst00000156084 | sg00000068308 | otud5-201 | X | 48922211 | 48957631 | - | mRNA | protein_coding |
| 130133 | enst00000610466 | sg00000068308 | otud5-208 | X | 48922640 | 48957894 | - | mRNA | protein_coding |
| 130625 | enst00000428668 | sg00000068308 | otud5-204 | X | 48922943 | 48958386 | - | mRNA | protein_coding |
| -130661 | enst00000337852 | sg00000101945 | suv39h1-201 | X | 48695554 | 48709010 | + | mRNA | protein_coding |
| 131521 | enst00000411377 | sg00000223309 | rnu6-722p-201 | X | 48959179 | 48959282 | - | snRNA | snrna |
| -137195 | enst00000470107 | sg00000015285 | was-204 | X | 48689020 | 48689594 | + | lnc_RNA | processed_transcript |
| -137936 | enst00000474174 | sg00000015285 | was-205 | X | 48688279 | 48688999 | + | lnc_RNA | processed_transcript |
| 138997 | enst00000419374 | sg00000102057 | kcnd1-203 | X | 48966090 | 48966758 | - | mRNA | protein_coding |
| -140436 | enst00000490627 | sg00000015285 | was-207 | X | 48685779 | 48688146 | + | lnc_RNA | processed_transcript |
| 140625 | enst00000376477 | sg00000102057 | kcnd1-202 | X | 48961378 | 48968386 | - | mRNA | protein_coding |
| -142387 | enst00000483750 | sg00000015285 | was-206 | X | 48683828 | 48688198 | + | lnc_RNA | processed_transcript |
| -142396 | enst00000465982 | sg00000015285 | was-203 | X | 48683819 | 48688137 | + | lnc_RNA | processed_transcript |
| -142416 | enst00000376701 | sg00000015285 | was-201 | X | 48683799 | 48691427 | + | mRNA | protein_coding |
| 144083 | enst00000218176 | sg00000102057 | kcnd1-201 | X | 48961380 | 48971844 | - | mRNA | protein_coding |
| -149619 | enst00000450772 | sg00000015285 | was-202 | X | 48676596 | 48686871 | + | mRNA | protein_coding |
| 153047 | enst00000488361 | sg00000068400 | gripap1-205 | X | 48977834 | 48980808 | - | lnc_RNA | processed_transcript |
| 156098 | enst00000619107 | sg00000068400 | gripap1-211 | X | 48976256 | 48983859 | - | mRNA | protein_coding |
| 160056 | enst00000619149 | sg00000068400 | gripap1-212 | X | 48973720 | 48987817 | - | lnc_RNA | retained_intron |
| 160890 | enst00000474512 | sg00000068400 | gripap1-203 | X | 48983392 | 48988651 | - | lnc_RNA | retained_intron |
| 163625 | enst00000473581 | sg00000068400 | gripap1-202 | X | 48976907 | 48991386 | - | lnc_RNA | retained_intron |
| 169546 | enst00000621664 | sg00000068400 | gripap1-213 | X | 48989611 | 48997307 | - | mRNA | nonsense_mediated_decay |
| 171637 | enst00000480041 | sg00000068400 | gripap1-204 | X | 48997948 | 48999398 | - | lnc_RNA | retained_intron |
| 171743 | enst00000495258 | sg00000068400 | gripap1-206 | X | 48998974 | 48999504 | - | lnc_RNA | retained_intron |
| 174436 | enst00000622231 | sg00000068400 | gripap1-214 | X | 48991010 | 49002197 | - | mRNA | protein_coding |
| 174463 | enst00000617369 | sg00000068400 | gripap1-210 | X | 48993448 | 49002224 | - | mRNA | protein_coding |
| 174473 | enst00000593475 | sg00000068400 | gripap1-207 | X | 48973723 | 49002234 | - | mRNA | protein_coding |
| 174488 | enst00000622599 | sg00000068400 | gripap1-215 | X | 48973723 | 49002249 | - | mRNA | protein_coding |
| 174501 | enst00000611705 | sg00000068400 | gripap1-208 | X | 48997259 | 49002262 | - | mRNA | protein_coding |
| 174501 | enst00000611757 | sg00000068400 | gripap1-209 | X | 48976907 | 49002262 | - | lnc_RNA | retained_intron |
| 174503 | enst00000376423 | sg00000068400 | gripap1-201 | X | 48973723 | 49002264 | - | mRNA | protein_coding |
| -190050 | enst00000438988 | sg00000231725 | vn1r110p-201 | X | 48636165 | 48637135 | + | pseudogenic_transcript | processed_pseudogene |
| 204306 | enst00000495940 | sg00000068323 | tfe3-205 | X | 49030515 | 49032067 | - | lnc_RNA | retained_intron |
| 210498 | enst00000481606 | sg00000068323 | tfe3-202 | X | 49037739 | 49038259 | - | lnc_RNA | processed_transcript |
| 212042 | enst00000487451 | sg00000068323 | tfe3-203 | X | 49031397 | 49039803 | - | lnc_RNA | processed_transcript |
| 215596 | enst00000315869 | sg00000068323 | tfe3-201 | X | 49028726 | 49043357 | - | mRNA | protein_coding |
| 215649 | enst00000493583 | sg00000068323 | tfe3-204 | X | 49028726 | 49043410 | - | mRNA | nonsense_mediated_decay |
| -222023 | enst00000492873 | sg00000101940 | wdr13-210 | X | 48604192 | 48605118 | + | lnc_RNA | retained_intron |
| -225633 | enst00000482760 | sg00000101940 | wdr13-207 | X | 48600582 | 48604892 | + | mRNA | protein_coding |
| 225811 | enst00000597275 | sg00000147144 | ccdc120-204 | X | 49053572 | 49068464 | + | mRNA | protein_coding |
| -226651 | enst00000495575 | sg00000101940 | wdr13-211 | X | 48599564 | 48600711 | + | lnc_RNA | retained_intron |
| -227495 | enst00000466962 | sg00000101940 | wdr13-203 | X | 48598720 | 48600535 | + | lnc_RNA | retained_intron |
| -228406 | enst00000479279 | sg00000101940 | wdr13-206 | X | 48597809 | 48605193 | + | lnc_RNA | retained_intron |
| -228681 | enst00000492715 | sg00000101940 | wdr13-209 | X | 48597534 | 48600281 | + | lnc_RNA | retained_intron |
| -228694 | enst00000472440 | sg00000101940 | wdr13-205 | X | 48597521 | 48598293 | + | lnc_RNA | retained_intron |
| -228700 | enst00000486125 | sg00000101940 | wdr13-208 | X | 48597515 | 48599682 | + | mRNA | nonsense_mediated_decay |
| -228708 | enst00000498631 | sg00000101940 | wdr13-212 | X | 48597507 | 48600541 | + | mRNA | nonsense_mediated_decay |
| -228723 | enst00000218056 | sg00000101940 | wdr13-201 | X | 48597492 | 48605193 | + | mRNA | protein_coding |
| -228723 | enst00000376729 | sg00000101940 | wdr13-202 | X | 48597492 | 48608869 | + | mRNA | protein_coding |
| 231205 | enst00000496529 | sg00000147144 | ccdc120-202 | X | 49058966 | 49068339 | + | mRNA | protein_coding |
| 231222 | enst00000606812 | sg00000147144 | ccdc120-207 | X | 49058983 | 49069857 | + | mRNA | protein_coding |
| 231238 | enst00000603986 | sg00000147144 | ccdc120-206 | X | 49058999 | 49069854 | + | mRNA | protein_coding |
| 231254 | enst00000536628 | sg00000147144 | ccdc120-203 | X | 49059015 | 49068354 | + | mRNA | protein_coding |
| 231260 | enst00000603906 | sg00000147144 | ccdc120-205 | X | 49059021 | 49068946 | + | mRNA | nonsense_mediated_decay |
| 234117 | enst00000482476 | sg00000147144 | ccdc120-201 | X | 49061878 | 49062665 | + | lnc_RNA | retained_intron |
| -236173 | enst00000470124 | sg00000101940 | wdr13-204 | X | 48590042 | 48598827 | + | mRNA | protein_coding |
| 238634 | enst00000620388 | sg00000147144 | ccdc120-208 | X | 49066395 | 49069347 | + | lnc_RNA | retained_intron |
| -242876 | enst00000406301 | sg00000220125 | mrpl32p1-201 | X | 48583093 | 48583339 | - | pseudogenic_transcript | processed_pseudogene |
| -245058 | enst00000453810 | sg00000228343 | ac115618.2-201 | X | 48579774 | 48581157 | - | lnc_RNA | lncrna |
| -245474 | enst00000623114 | sg00000279528 | ac115618.3-201 | X | 48580741 | 48581165 | + | unconfirmed_transcript | tec |
| 246074 | enst00000618882 | sg00000243279 | praf2-203 | X | 49071597 | 49073835 | - | lnc_RNA | processed_transcript |
| 246228 | enst00000376386 | sg00000243279 | praf2-201 | X | 49072031 | 49073989 | - | mRNA | protein_coding |
| 246241 | enst00000553851 | sg00000243279 | praf2-202 | X | 49071161 | 49074002 | - | mRNA | protein_coding |
| 247617 | enst00000486337 | sg00000196998 | wdr45-224 | X | 49074640 | 49075378 | - | mRNA | protein_coding |
| 248113 | enst00000480412 | sg00000196998 | wdr45-222 | X | 49075359 | 49075874 | - | lnc_RNA | retained_intron |
| 248116 | enst00000475977 | sg00000196998 | wdr45-220 | X | 49074442 | 49075877 | - | mRNA | protein_coding |
| 248194 | enst00000433252 | sg00000196998 | wdr45-210 | X | 49074669 | 49075955 | - | lnc_RNA | retained_intron |
| 249129 | enst00000472654 | sg00000196998 | wdr45-216 | X | 49075655 | 49076890 | - | lnc_RNA | retained_intron |
| 249502 | enst00000634465 | sg00000196998 | wdr45-227 | X | 49076400 | 49077263 | - | lnc_RNA | retained_intron |
| 249818 | enst00000634852 | sg00000196998 | wdr45-235 | X | 49074820 | 49077579 | - | lnc_RNA | processed_transcript |
| 249857 | enst00000635329 | sg00000196998 | wdr45-240 | X | 49076508 | 49077618 | - | lnc_RNA | processed_transcript |
| 249985 | enst00000367375 | sg00000196998 | wdr45-203 | X | 49074669 | 49077746 | - | mRNA | protein_coding |
| -250316 | enst00000354480 | sg00000102317 | rbm3-201 | X | 48575899 | 48578291 | + | mRNA | protein_coding |
| 250351 | enst00000419567 | sg00000196998 | wdr45-208 | X | 49075668 | 49078112 | - | mRNA | protein_coding |
| -251225 | enst00000491236 | sg00000102317 | rbm3-210 | X | 48574990 | 48575995 | + | lnc_RNA | processed_transcript |
| -251263 | enst00000376755 | sg00000102317 | rbm3-202 | X | 48574952 | 48577868 | + | mRNA | protein_coding |
| 251334 | enst00000636645 | sg00000196998 | wdr45-244 | X | 49078073 | 49079095 | - | mRNA | protein_coding |
| -251355 | enst00000376775 | sg00000204620 | ac115618.1-201 | X | 48568014 | 48574860 | - | lnc_RNA | lncrna |
| -251679 | enst00000485213 | sg00000102317 | rbm3-206 | X | 48574536 | 48576353 | + | lnc_RNA | processed_transcript |
| -251691 | enst00000489344 | sg00000102317 | rbm3-208 | X | 48574524 | 48577735 | + | lnc_RNA | processed_transcript |
| -251691 | enst00000491240 | sg00000102317 | rbm3-211 | X | 48574524 | 48576068 | + | lnc_RNA | processed_transcript |
| -251704 | enst00000490127 | sg00000102317 | rbm3-209 | X | 48574511 | 48576520 | + | lnc_RNA | processed_transcript |
| -251724 | enst00000466764 | sg00000102317 | rbm3-204 | X | 48574491 | 48577977 | + | lnc_RNA | processed_transcript |
| -251731 | enst00000488216 | sg00000102317 | rbm3-207 | X | 48574484 | 48576419 | + | lnc_RNA | processed_transcript |
| -251731 | enst00000376759 | sg00000102317 | rbm3-203 | X | 48574484 | 48581162 | + | mRNA | protein_coding |
| -251766 | enst00000472897 | sg00000102317 | rbm3-205 | X | 48574449 | 48576591 | + | lnc_RNA | processed_transcript |
| 251941 | enst00000636049 | sg00000196998 | wdr45-243 | X | 49078046 | 49079702 | - | mRNA | protein_coding |
| 252095 | enst00000465431 | sg00000196998 | wdr45-213 | X | 49076769 | 49079856 | - | lnc_RNA | processed_transcript |
| 252095 | enst00000634522 | sg00000196998 | wdr45-228 | X | 49075703 | 49079856 | - | mRNA | nonsense_mediated_decay |
| 252098 | enst00000474053 | sg00000196998 | wdr45-218 | X | 49075704 | 49079859 | - | mRNA | protein_coding |
| 252106 | enst00000635003 | sg00000196998 | wdr45-239 | X | 49074443 | 49079867 | - | mRNA | protein_coding |
| 252111 | enst00000473974 | sg00000196998 | wdr45-217 | X | 49074700 | 49079872 | - | mRNA | protein_coding |
| 252119 | enst00000475880 | sg00000196998 | wdr45-219 | X | 49075364 | 49079880 | - | mRNA | protein_coding |
| 252120 | enst00000634838 | sg00000196998 | wdr45-233 | X | 49074447 | 49079881 | - | mRNA | protein_coding |
| 252126 | enst00000376372 | sg00000196998 | wdr45-206 | X | 49074442 | 49079887 | - | mRNA | protein_coding |
| 252126 | enst00000476728 | sg00000196998 | wdr45-221 | X | 49075895 | 49079887 | - | mRNA | protein_coding |
| 252126 | enst00000376358 | sg00000288053 | ac231657.3-201 | X | 49071470 | 49079887 | - | mRNA | protein_coding |
| 252128 | enst00000635666 | sg00000196998 | wdr45-242 | X | 49075219 | 49079889 | - | mRNA | protein_coding |
| 252131 | enst00000634559 | sg00000196998 | wdr45-229 | X | 49074640 | 49079892 | - | mRNA | protein_coding |
| 252137 | enst00000322995 | sg00000196998 | wdr45-201 | X | 49074640 | 49079898 | - | mRNA | protein_coding |
| 252139 | enst00000634736 | sg00000196998 | wdr45-232 | X | 49075213 | 49079900 | - | mRNA | protein_coding |
| 252140 | enst00000634390 | sg00000196998 | wdr45-226 | X | 49077558 | 49079901 | - | lnc_RNA | processed_transcript |
| 252141 | enst00000396681 | sg00000196998 | wdr45-207 | X | 49074792 | 49079902 | - | mRNA | protein_coding |
| 252141 | enst00000635344 | sg00000196998 | wdr45-241 | X | 49075373 | 49079902 | - | mRNA | nonsense_mediated_decay |
| 252142 | enst00000471338 | sg00000196998 | wdr45-215 | X | 49075745 | 49079903 | - | mRNA | protein_coding |
| 252150 | enst00000485908 | sg00000196998 | wdr45-223 | X | 49074658 | 49079911 | - | mRNA | protein_coding |
| 252154 | enst00000634711 | sg00000196998 | wdr45-231 | X | 49076990 | 49079915 | - | lnc_RNA | retained_intron |
| 252154 | enst00000496803 | sg00000196998 | wdr45-225 | X | 49077074 | 49079915 | - | lnc_RNA | retained_intron |
| 252168 | enst00000376368 | sg00000196998 | wdr45-205 | X | 49074704 | 49079929 | - | mRNA | protein_coding |
| 252312 | enst00000634944 | sg00000196998 | wdr45-238 | X | 49074442 | 49080073 | - | mRNA | protein_coding |
| 252336 | enst00000465806 | sg00000196998 | wdr45-214 | X | 49074433 | 49080097 | - | lnc_RNA | retained_intron |
| 252336 | enst00000376357 | sg00000196998 | wdr45-204 | X | 49077487 | 49080097 | - | lnc_RNA | processed_transcript |
| 252392 | enst00000423215 | sg00000196998 | wdr45-209 | X | 49075740 | 49080153 | - | mRNA | protein_coding |
| 252495 | enst00000465382 | sg00000196998 | wdr45-212 | X | 49075939 | 49080256 | - | mRNA | protein_coding |
| 254267 | enst00000384209 | sg00000206936 | rnu4-52p-201 | X | 49082028 | 49082165 | + | snRNA | snrna |
| 273299 | enst00000634849 | sg00000196998 | wdr45-234 | X | 49076447 | 49101060 | - | mRNA | protein_coding |
| 273360 | enst00000356463 | sg00000196998 | wdr45-202 | X | 49074640 | 49101121 | - | mRNA | protein_coding |
| 273383 | enst00000460501 | sg00000196998 | wdr45-211 | X | 49080031 | 49101144 | - | lnc_RNA | processed_transcript |
| 273383 | enst00000634939 | sg00000196998 | wdr45-237 | X | 49080085 | 49101144 | - | lnc_RNA | processed_transcript |
| 273383 | enst00000634908 | sg00000196998 | wdr45-236 | X | 49079960 | 49101144 | - | lnc_RNA | processed_transcript |
| 273409 | enst00000634671 | sg00000196998 | wdr45-230 | X | 49077653 | 49101170 | - | mRNA | protein_coding |
| -286417 | enst00000418627 | sg00000068354 | tbc1d25-202 | X | 48539798 | 48559284 | + | mRNA | protein_coding |
| -286444 | enst00000476141 | sg00000068354 | tbc1d25-203 | X | 48539771 | 48559722 | + | lnc_RNA | processed_transcript |
| -286445 | enst00000494495 | sg00000068354 | tbc1d25-205 | X | 48539770 | 48559685 | + | lnc_RNA | processed_transcript |
| -286478 | enst00000481090 | sg00000068354 | tbc1d25-204 | X | 48539737 | 48559886 | + | mRNA | nonsense_mediated_decay |
| -286501 | enst00000376771 | sg00000068354 | tbc1d25-201 | X | 48539714 | 48562609 | + | mRNA | protein_coding |
| 295974 | enst00000156109 | sg00000068394 | gpkow-201 | X | 49113407 | 49123735 | - | mRNA | protein_coding |
| -299366 | enst00000466461 | sg00000147155 | ebp-204 | X | 48526849 | 48527671 | + | lnc_RNA | processed_transcript |
| -301735 | enst00000610965 | sg00000276823 | af196972.2-201 | X | 48524480 | 48524806 | + | ncRNA | misc_rna |
| -304346 | enst00000414061 | sg00000147155 | ebp-202 | X | 48521869 | 48527253 | + | mRNA | protein_coding |
| -304359 | enst00000446158 | sg00000147155 | ebp-203 | X | 48521856 | 48528245 | + | mRNA | protein_coding |
| -304407 | enst00000495186 | sg00000147155 | ebp-205 | X | 48521808 | 48528716 | + | mRNA | protein_coding |
| -304409 | enst00000651615 | sg00000286268 | af196969.1-201 | X | 48521806 | 48545469 | + | mRNA | protein_coding |
| -304410 | enst00000498425 | sg00000147155 | ebp-206 | X | 48521805 | 48528439 | + | lnc_RNA | processed_transcript |
| -304416 | enst00000276096 | sg00000147155 | ebp-201 | X | 48521799 | 48528710 | + | lnc_RNA | processed_transcript |
| -310773 | enst00000459953 | sg00000102312 | porcn-206 | X | 48515442 | 48516229 | + | lnc_RNA | retained_intron |
| -316394 | enst00000367574 | sg00000102312 | porcn-205 | X | 48509821 | 48520476 | + | mRNA | protein_coding |
| -316394 | enst00000537758 | sg00000102312 | porcn-214 | X | 48509821 | 48520476 | + | mRNA | protein_coding |
| -316437 | enst00000326194 | sg00000102312 | porcn-201 | X | 48509778 | 48520802 | + | mRNA | protein_coding |
| -316539 | enst00000470275 | sg00000102312 | porcn-207 | X | 48509676 | 48512497 | + | mRNA | nonsense_mediated_decay |
| -317175 | enst00000361988 | sg00000102312 | porcn-204 | X | 48509040 | 48520694 | + | mRNA | protein_coding |
| -317184 | enst00000491243 | sg00000102312 | porcn-212 | X | 48509031 | 48520806 | + | lnc_RNA | retained_intron |
| -317185 | enst00000489940 | sg00000102312 | porcn-211 | X | 48509030 | 48511451 | + | mRNA | protein_coding |
| -317204 | enst00000528612 | sg00000102312 | porcn-213 | X | 48509011 | 48512719 | + | mRNA | nonsense_mediated_decay |
| -317213 | enst00000355961 | sg00000102312 | porcn-202 | X | 48509002 | 48520814 | + | mRNA | protein_coding |
| -317221 | enst00000485288 | sg00000102312 | porcn-209 | X | 48508994 | 48520806 | + | mRNA | nonsense_mediated_decay |
| -317223 | enst00000472520 | sg00000102312 | porcn-208 | X | 48508992 | 48520808 | + | mRNA | nonsense_mediated_decay |
| -317249 | enst00000486272 | sg00000102312 | porcn-210 | X | 48508966 | 48511375 | + | lnc_RNA | processed_transcript |
| -317253 | enst00000359882 | sg00000102312 | porcn-203 | X | 48508962 | 48520806 | + | mRNA | protein_coding |
| -317377 | enst00000445586 | sg00000224292 | af196972.1-201 | X | 48506523 | 48508838 | - | lnc_RNA | lncrna |
| 324890 | enst00000584590 | sg00000265033 | rn7sl262p-201 | X | 49152651 | 49152944 | + | ncRNA | misc_rna |
| 329590 | enst00000624556 | sg00000280116 | ac231657.2-201 | X | 49155242 | 49157351 | - | pseudogenic_transcript | unprocessed_pseudogene |
| 334803 | enst00000616266 | sg00000269313 | magix-208 | X | 49162564 | 49168483 | + | mRNA | protein_coding |
| 334904 | enst00000616812 | sg00000269313 | magix-209 | X | 49162665 | 49166632 | + | lnc_RNA | retained_intron |
| 334916 | enst00000614322 | sg00000269313 | magix-205 | X | 49162677 | 49166214 | + | mRNA | nonsense_mediated_decay |
| 335082 | enst00000615626 | sg00000269313 | magix-206 | X | 49162843 | 49166632 | + | mRNA | protein_coding |
| 335113 | enst00000614074 | sg00000269313 | magix-204 | X | 49162874 | 49166399 | + | mRNA | protein_coding |
| 335129 | enst00000595224 | sg00000269313 | magix-202 | X | 49162890 | 49166632 | + | mRNA | protein_coding |
| 336171 | enst00000615915 | sg00000269313 | magix-207 | X | 49163932 | 49166632 | + | mRNA | protein_coding |
| 336235 | enst00000612119 | sg00000269313 | magix-203 | X | 49163996 | 49166213 | + | lnc_RNA | processed_transcript |
| 336783 | enst00000454342 | sg00000269313 | magix-201 | X | 49164544 | 49166223 | + | mRNA | protein_coding |
| 338211 | enst00000624313 | sg00000279422 | ac231657.1-201 | X | 49165576 | 49165972 | - | unconfirmed_transcript | tec |
| 344137 | enst00000376327 | sg00000102007 | plp2-202 | X | 49171898 | 49175235 | + | mRNA | protein_coding |
| 344165 | enst00000376322 | sg00000102007 | plp2-201 | X | 49171926 | 49173683 | + | mRNA | protein_coding |
| -344583 | enst00000489599 | sg00000068438 | ftsj1-210 | X | 48481632 | 48485984 | + | lnc_RNA | processed_transcript |
| -344733 | enst00000475806 | sg00000068438 | ftsj1-207 | X | 48481482 | 48482954 | + | lnc_RNA | processed_transcript |
| -344789 | enst00000467954 | sg00000068438 | ftsj1-205 | X | 48481426 | 48485816 | + | lnc_RNA | processed_transcript |
| -345050 | enst00000466371 | sg00000068438 | ftsj1-204 | X | 48481165 | 48482954 | + | lnc_RNA | processed_transcript |
| -347177 | enst00000496365 | sg00000068438 | ftsj1-213 | X | 48479038 | 48486311 | + | lnc_RNA | processed_transcript |
| -347534 | enst00000490202 | sg00000068438 | ftsj1-211 | X | 48478681 | 48482954 | + | lnc_RNA | processed_transcript |
| -349955 | enst00000487353 | sg00000068438 | ftsj1-209 | X | 48476260 | 48479116 | + | lnc_RNA | processed_transcript |
| -349997 | enst00000473235 | sg00000068438 | ftsj1-206 | X | 48476218 | 48482604 | + | lnc_RNA | processed_transcript |
| -350012 | enst00000485486 | sg00000068438 | ftsj1-208 | X | 48476203 | 48479070 | + | lnc_RNA | processed_transcript |
| -350016 | enst00000348411 | sg00000068438 | ftsj1-202 | X | 48476199 | 48486350 | + | mRNA | protein_coding |
| -350054 | enst00000019019 | sg00000068438 | ftsj1-201 | X | 48476161 | 48486299 | + | mRNA | protein_coding |
| -350062 | enst00000492562 | sg00000068438 | ftsj1-212 | X | 48476153 | 48482484 | + | lnc_RNA | processed_transcript |
| -350194 | enst00000396894 | sg00000068438 | ftsj1-203 | X | 48476021 | 48486364 | + | mRNA | protein_coding |
| 351522 | enst00000614014 | sg00000012211 | prickle3-208 | X | 49177137 | 49179283 | - | lnc_RNA | retained_intron |
| -355955 | enst00000620913 | sg00000017483 | slc38a5-213 | X | 48458544 | 48470260 | - | mRNA | protein_coding |
| -355972 | enst00000429543 | sg00000017483 | slc38a5-203 | X | 48466015 | 48470243 | - | mRNA | protein_coding |
| -356038 | enst00000595796 | sg00000017483 | slc38a5-210 | X | 48458537 | 48470177 | - | mRNA | protein_coding |
| -356658 | enst00000488083 | sg00000017483 | slc38a5-207 | X | 48466015 | 48469557 | - | mRNA | protein_coding |
| 357028 | enst00000453382 | sg00000012211 | prickle3-204 | X | 49175621 | 49184789 | - | mRNA | protein_coding |
| 357132 | enst00000540849 | sg00000012211 | prickle3-205 | X | 49175264 | 49184893 | - | mRNA | nonsense_mediated_decay |
| 357137 | enst00000432913 | sg00000012211 | prickle3-203 | X | 49177989 | 49184898 | - | mRNA | protein_coding |
| -357198 | enst00000416711 | sg00000017483 | slc38a5-202 | X | 48462898 | 48469017 | - | mRNA | protein_coding |
| -357658 | enst00000441948 | sg00000017483 | slc38a5-205 | X | 48461752 | 48468557 | - | mRNA | protein_coding |
| -357827 | enst00000413668 | sg00000017483 | slc38a5-201 | X | 48462122 | 48468388 | - | mRNA | protein_coding |
| -357904 | enst00000440085 | sg00000017483 | slc38a5-204 | X | 48461731 | 48468311 | - | mRNA | protein_coding |
| 358612 | enst00000599218 | sg00000012211 | prickle3-206 | X | 49174802 | 49186373 | - | mRNA | protein_coding |
| 358628 | enst00000376310 | sg00000012211 | prickle3-201 | X | 49179405 | 49186389 | - | lnc_RNA | retained_intron |
| 358631 | enst00000611313 | sg00000012211 | prickle3-207 | X | 49183594 | 49186392 | - | lnc_RNA | retained_intron |
| -358722 | enst00000622196 | sg00000017483 | slc38a5-214 | X | 48458539 | 48467493 | - | mRNA | protein_coding |
| -358722 | enst00000619100 | sg00000017483 | slc38a5-212 | X | 48458539 | 48467493 | - | mRNA | protein_coding |
| 358767 | enst00000376317 | sg00000012211 | prickle3-202 | X | 49179806 | 49186528 | - | mRNA | protein_coding |
| -359155 | enst00000497336 | sg00000017483 | slc38a5-209 | X | 48458545 | 48467060 | - | lnc_RNA | processed_transcript |
| -359343 | enst00000494034 | sg00000017483 | slc38a5-208 | X | 48460986 | 48466872 | - | mRNA | nonsense_mediated_decay |
| -365238 | enst00000480105 | sg00000017483 | slc38a5-206 | X | 48459220 | 48460977 | - | lnc_RNA | retained_intron |
| -365361 | enst00000615300 | sg00000017483 | slc38a5-211 | X | 48458693 | 48460854 | - | lnc_RNA | retained_intron |
| 371205 | enst00000433499 | sg00000237341 | syp-as1-201 | X | 49198966 | 49202454 | + | lnc_RNA | lncrna |
| 372415 | enst00000472598 | sg00000102003 | syp-205 | X | 49189137 | 49200176 | - | mRNA | protein_coding |
| 372432 | enst00000376303 | sg00000102003 | syp-202 | X | 49189253 | 49200193 | - | mRNA | nonsense_mediated_decay |
| 372432 | enst00000469389 | sg00000102003 | syp-204 | X | 49194191 | 49200193 | - | mRNA | nonsense_mediated_decay |
| 372432 | enst00000466635 | sg00000102003 | syp-203 | X | 49194311 | 49200193 | - | mRNA | nonsense_mediated_decay |
| 372434 | enst00000494396 | sg00000102003 | syp-208 | X | 49197017 | 49200195 | - | lnc_RNA | retained_intron |
| 372434 | enst00000472737 | sg00000102003 | syp-206 | X | 49197377 | 49200195 | - | lnc_RNA | retained_intron |
| 372438 | enst00000479808 | sg00000102003 | syp-207 | X | 49190542 | 49200199 | - | mRNA | protein_coding |
| 372498 | enst00000263233 | sg00000102003 | syp-201 | X | 49187804 | 49200259 | - | mRNA | protein_coding |
| -377336 | enst00000457562 | sg00000226971 | al606490.2-201 | X | 48446893 | 48448879 | - | pseudogenic_transcript | processed_pseudogene |
| 381951 | enst00000486943 | sg00000102001 | cacna1f-206 | X | 49208816 | 49209712 | - | mRNA | protein_coding |
| 383238 | enst00000481035 | sg00000102001 | cacna1f-205 | X | 49209661 | 49210999 | - | lnc_RNA | retained_intron |
| -393014 | enst00000441624 | sg00000235350 | al606490.8-201 | X | 48433201 | 48441619 | + | pseudogenic_transcript | unprocessed_pseudogene |
| 395382 | enst00000480889 | sg00000102001 | cacna1f-204 | X | 49222258 | 49223143 | - | lnc_RNA | processed_transcript |
| -402747 | enst00000423117 | sg00000231489 | al606490.4-201 | X | 48423342 | 48423468 | - | pseudogenic_transcript | processed_pseudogene |
| 405548 | enst00000376251 | sg00000102001 | cacna1f-202 | X | 49205063 | 49233309 | - | mRNA | protein_coding |
| 405610 | enst00000376265 | sg00000102001 | cacna1f-203 | X | 49205063 | 49233371 | - | mRNA | protein_coding |
| 405610 | enst00000323022 | sg00000102001 | cacna1f-201 | X | 49205063 | 49233371 | - | mRNA | protein_coding |
| 406740 | enst00000448722 | sg00000230216 | hspb1p2-201 | X | 49233956 | 49234501 | - | pseudogenic_transcript | processed_pseudogene |
| 407709 | enst00000376227 | sg00000101997 | ccdc22-201 | X | 49235470 | 49250520 | + | mRNA | protein_coding |
| 407735 | enst00000496651 | sg00000101997 | ccdc22-203 | X | 49235496 | 49243466 | + | lnc_RNA | processed_transcript |
| 409132 | enst00000490300 | sg00000101997 | ccdc22-202 | X | 49236893 | 49243346 | + | lnc_RNA | processed_transcript |
| -413912 | enst00000413071 | sg00000231603 | al606490.5-201 | X | 48412303 | 48415285 | + | pseudogenic_transcript | processed_pseudogene |
| -414305 | enst00000619890 | sg00000269791 | ssx4b-202 | X | 48402082 | 48411910 | - | mRNA | protein_coding |
| -414316 | enst00000595235 | sg00000269791 | ssx4b-201 | X | 48402078 | 48411899 | - | mRNA | protein_coding |
| 430744 | enst00000518685 | sg00000049768 | foxp3-205 | X | 49251334 | 49258505 | - | mRNA | protein_coding |
| 430766 | enst00000651307 | sg00000049768 | foxp3-208 | X | 49251278 | 49258527 | - | mRNA | nonsense_mediated_decay |
| 431479 | enst00000376197 | sg00000049768 | foxp3-201 | X | 49251334 | 49259240 | - | mRNA | protein_coding |
| 436907 | enst00000455775 | sg00000049768 | foxp3-204 | X | 49251295 | 49264668 | - | mRNA | protein_coding |
| 436919 | enst00000652559 | sg00000049768 | foxp3-209 | X | 49256789 | 49264680 | - | mRNA | protein_coding |
| 436949 | enst00000557224 | sg00000049768 | foxp3-206 | X | 49251334 | 49264710 | - | mRNA | protein_coding |
| 436949 | enst00000376207 | sg00000049768 | foxp3-203 | X | 49250438 | 49264710 | - | mRNA | protein_coding |
| 437039 | enst00000376199 | sg00000049768 | foxp3-202 | X | 49251090 | 49264800 | - | mRNA | protein_coding |
| 441869 | enst00000650666 | sg00000286181 | ac232271.3-202 | X | 49265612 | 49269630 | - | lnc_RNA | lncrna |
| 442032 | enst00000055335 | sg00000049769 | ppp1r3f-201 | X | 49269793 | 49288090 | + | mRNA | protein_coding |
| 442082 | enst00000466508 | sg00000049769 | ppp1r3f-203 | X | 49269843 | 49287225 | + | mRNA | protein_coding |
| 442109 | enst00000495799 | sg00000049769 | ppp1r3f-205 | X | 49269870 | 49287170 | + | mRNA | protein_coding |
| 442453 | enst00000652102 | sg00000049769 | ppp1r3f-206 | X | 49270214 | 49301400 | + | mRNA | nonsense_mediated_decay |
| -442676 | enst00000595689 | sg00000268009 | ssx4-201 | X | 48383539 | 48393347 | + | mRNA | protein_coding |
| -442699 | enst00000620320 | sg00000268009 | ssx4-202 | X | 48383516 | 48393343 | + | mRNA | protein_coding |
| 442716 | enst00000650877 | sg00000049768 | foxp3-207 | X | 49258343 | 49270477 | - | mRNA | protein_coding |
| 442760 | enst00000651462 | sg00000286181 | ac232271.3-201 | X | 49262866 | 49270521 | - | lnc_RNA | lncrna |
| 442860 | enst00000471261 | sg00000049769 | ppp1r3f-204 | X | 49270621 | 49301461 | + | mRNA | protein_coding |
| 445293 | enst00000602455 | sg00000270012 | ac232271.1-201 | X | 49273054 | 49275768 | + | lnc_RNA | lncrna |
| 453015 | enst00000376188 | sg00000049769 | ppp1r3f-202 | X | 49280776 | 49287510 | + | mRNA | protein_coding |
| 453679 | enst00000652581 | sg00000286031 | ac232271.2-201 | X | 49279677 | 49281440 | - | lnc_RNA | lncrna |
| -454310 | enst00000433136 | sg00000234448 | al606490.7-201 | X | 48371905 | 48372095 | + | pseudogenic_transcript | processed_pseudogene |
| -469090 | enst00000452266 | sg00000225055 | al606490.1-201 | X | 48357125 | 48359495 | + | pseudogenic_transcript | processed_pseudogene |
| -469508 | enst00000376893 | sg00000165584 | ssx3-202 | X | 48348257 | 48356707 | - | mRNA | protein_coding |
| -469512 | enst00000298396 | sg00000165584 | ssx3-201 | X | 48346427 | 48356703 | - | mRNA | protein_coding |
| -470943 | enst00000612497 | sg00000165584 | ssx3-204 | X | 48349446 | 48355272 | - | mRNA | protein_coding |
| -473968 | enst00000376895 | sg00000165584 | ssx3-203 | X | 48346626 | 48352247 | - | lnc_RNA | retained_intron |
| 475908 | enst00000407599 | sg00000215274 | gage10-201 | X | 49303669 | 49319844 | + | mRNA | protein_coding |
| -489046 | enst00000603331 | sg00000270747 | al606490.9-201 | X | 48336899 | 48337169 | - | pseudogenic_transcript | processed_pseudogene |
| -491776 | enst00000422410 | sg00000230100 | al606490.3-201 | X | 48333675 | 48334439 | - | lnc_RNA | lncrna |
| 494296 | enst00000442437 | sg00000224659 | gage12j-201 | X | 49322057 | 49329384 | + | mRNA | protein_coding |
Source file: /hps/research1/birney/users/adrien/analyses/cancer_DNA_promethion/run_1_2_3_4/DNA_pipeline_2/results/methylation/pycometh_meth_comp_CGI_3/out.tsv.gz
MD5 hash: 9aa0e3f69cb4e12345c3758eb68a5efc