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CpG interval report generated on 20/05/20 with pycoMeth 0.4.6
Interval details
| pvalue rank | chromosome | start | end | length | number of samples | number of CpGs | pvalue | adjusted pvalue |
|---|---|---|---|---|---|---|---|---|
| #49 | 8 | 143278147 | 143279510 | 1363 | 3 | 49 | 1.38088e-21 | 2.80263e-19 |
Methylation log-likelihood ratio by CpG position
Distribution of CpG methylation log-likelihood ratio by sample
Closest transcripts TSS
| distance to tss | transcript id | gene id | transcript name | chromosome | start | end | strand | feature type | transcript biotype |
|---|---|---|---|---|---|---|---|---|---|
| 1339 | enst00000523031 | sg00000253716 | mincr-205 | 8 | 143280161 | 143280849 | - | lnc_RNA | lncrna |
| 1740 | enst00000519852 | sg00000253716 | mincr-203 | 8 | 143280828 | 143281250 | - | lnc_RNA | lncrna |
| 2100 | enst00000521207 | sg00000253716 | mincr-204 | 8 | 143281026 | 143281610 | - | lnc_RNA | lncrna |
| 2155 | enst00000524335 | sg00000253716 | mincr-206 | 8 | 143281070 | 143281665 | - | lnc_RNA | lncrna |
| 2160 | enst00000517411 | sg00000253716 | mincr-201 | 8 | 143280161 | 143281670 | - | lnc_RNA | lncrna |
| 2177 | enst00000671046 | sg00000253716 | mincr-207 | 8 | 143280161 | 143281687 | - | lnc_RNA | lncrna |
| 2180 | enst00000518073 | sg00000253716 | mincr-202 | 8 | 143280828 | 143281690 | - | lnc_RNA | lncrna |
| -3548 | enst00000523812 | sg00000250571 | gli4-211 | 8 | 143274599 | 143276931 | + | lnc_RNA | processed_transcript |
| -3685 | enst00000522033 | sg00000250571 | gli4-208 | 8 | 143274462 | 143276170 | + | lnc_RNA | retained_intron |
| -8681 | enst00000517530 | sg00000250571 | gli4-204 | 8 | 143269466 | 143276411 | + | mRNA | protein_coding |
| -8777 | enst00000520021 | sg00000250571 | gli4-206 | 8 | 143269370 | 143275305 | + | mRNA | protein_coding |
| -8789 | enst00000344692 | sg00000250571 | gli4-202 | 8 | 143269358 | 143275552 | + | mRNA | protein_coding |
| -8789 | enst00000517468 | sg00000250571 | gli4-203 | 8 | 143269358 | 143275694 | + | mRNA | protein_coding |
| -8789 | enst00000523522 | sg00000250571 | gli4-210 | 8 | 143269358 | 143276931 | + | mRNA | protein_coding |
| 10166 | enst00000523891 | sg00000185730 | znf696-206 | 8 | 143289676 | 143295964 | + | mRNA | protein_coding |
| -10702 | enst00000340042 | sg00000250571 | gli4-201 | 8 | 143267445 | 143276931 | + | mRNA | protein_coding |
| -10710 | enst00000521682 | sg00000250571 | gli4-207 | 8 | 143267437 | 143275751 | + | mRNA | protein_coding |
| -10713 | enst00000522479 | sg00000250571 | gli4-209 | 8 | 143267434 | 143276181 | + | lnc_RNA | processed_transcript |
| -10714 | enst00000519876 | sg00000250571 | gli4-205 | 8 | 143267433 | 143273383 | + | lnc_RNA | processed_transcript |
| 11111 | enst00000607376 | sg00000272172 | ac138696.2-201 | 8 | 143290399 | 143290621 | - | lnc_RNA | lncrna |
| 11400 | enst00000518575 | sg00000185730 | znf696-203 | 8 | 143290910 | 143296287 | + | mRNA | protein_coding |
| 11894 | enst00000521537 | sg00000185730 | znf696-205 | 8 | 143291404 | 143293312 | + | mRNA | protein_coding |
| 11907 | enst00000330143 | sg00000185730 | znf696-201 | 8 | 143291417 | 143299952 | + | mRNA | protein_coding |
| 11907 | enst00000518432 | sg00000185730 | znf696-202 | 8 | 143291417 | 143295996 | + | mRNA | protein_coding |
| 11912 | enst00000520333 | sg00000185730 | znf696-204 | 8 | 143291422 | 143295812 | + | mRNA | protein_coding |
| -28306 | enst00000650767 | sg00000181638 | zfp41-205 | 8 | 143249841 | 143250440 | + | mRNA | protein_coding |
| -29006 | enst00000517702 | sg00000181638 | zfp41-202 | 8 | 143249141 | 143249756 | + | lnc_RNA | processed_transcript |
| 30993 | enst00000517857 | sg00000184428 | top1mt-203 | 8 | 143309356 | 143310503 | - | lnc_RNA | retained_intron |
| -31037 | enst00000522452 | sg00000264668 | ac138696.1-201 | 8 | 143247110 | 143276403 | + | mRNA | protein_coding |
| -31208 | enst00000330701 | sg00000181638 | zfp41-201 | 8 | 143246939 | 143262705 | + | mRNA | protein_coding |
| -31216 | enst00000522233 | sg00000181638 | zfp41-204 | 8 | 143246931 | 143248490 | + | lnc_RNA | processed_transcript |
| -31326 | enst00000520584 | sg00000181638 | zfp41-203 | 8 | 143246821 | 143253591 | + | mRNA | protein_coding |
| 36297 | enst00000519977 | sg00000184428 | top1mt-210 | 8 | 143304384 | 143315807 | - | mRNA | protein_coding |
| 49923 | enst00000522121 | sg00000184428 | top1mt-216 | 8 | 143325355 | 143329433 | - | mRNA | nonsense_mediated_decay |
| 52301 | enst00000522041 | sg00000184428 | top1mt-214 | 8 | 143324000 | 143331811 | - | mRNA | protein_coding |
| 54546 | enst00000519139 | sg00000184428 | top1mt-207 | 8 | 143316092 | 143334056 | - | mRNA | protein_coding |
| 55285 | enst00000523676 | sg00000184428 | top1mt-218 | 8 | 143309377 | 143334795 | - | mRNA | protein_coding |
| 55311 | enst00000524092 | sg00000184428 | top1mt-219 | 8 | 143332503 | 143334821 | - | lnc_RNA | processed_transcript |
| 55334 | enst00000523417 | sg00000184428 | top1mt-217 | 8 | 143325425 | 143334844 | - | mRNA | nonsense_mediated_decay |
| 55344 | enst00000519591 | sg00000184428 | top1mt-209 | 8 | 143324060 | 143334854 | - | mRNA | protein_coding |
| 55353 | enst00000518951 | sg00000184428 | top1mt-206 | 8 | 143316000 | 143334863 | - | mRNA | nonsense_mediated_decay |
| 55356 | enst00000522043 | sg00000184428 | top1mt-215 | 8 | 143329387 | 143334866 | - | mRNA | protein_coding |
| 55370 | enst00000329245 | sg00000184428 | top1mt-201 | 8 | 143309324 | 143334880 | - | mRNA | protein_coding |
| -64929 | enst00000622500 | sg00000277494 | gpihbp1-201 | 8 | 143213218 | 143217170 | + | mRNA | protein_coding |
| 65474 | enst00000518007 | sg00000184428 | top1mt-204 | 8 | 143325522 | 143344984 | - | mRNA | protein_coding |
| 70662 | enst00000390919 | sg00000212221 | rnu6-220p-201 | 8 | 143350172 | 143350278 | + | snRNA | snrna |
| 76536 | enst00000518760 | sg00000184428 | top1mt-205 | 8 | 143326290 | 143356046 | - | mRNA | protein_coding |
| 79156 | enst00000521024 | sg00000184428 | top1mt-212 | 8 | 143344737 | 143358666 | - | lnc_RNA | processed_transcript |
| 80414 | enst00000521193 | sg00000184428 | top1mt-213 | 8 | 143309356 | 143359924 | - | mRNA | protein_coding |
| 80450 | enst00000520950 | sg00000184428 | top1mt-211 | 8 | 143326312 | 143359960 | - | mRNA | protein_coding |
| 80467 | enst00000519148 | sg00000184428 | top1mt-208 | 8 | 143309360 | 143359977 | - | mRNA | protein_coding |
| 80469 | enst00000505857 | sg00000184428 | top1mt-202 | 8 | 143343199 | 143359979 | - | lnc_RNA | processed_transcript |
| 89038 | enst00000518049 | sg00000254389 | rhpn1-as1-201 | 8 | 143366631 | 143368548 | - | lnc_RNA | lncrna |
| 89366 | enst00000289013 | sg00000158106 | rhpn1-201 | 8 | 143368876 | 143384221 | + | mRNA | protein_coding |
| 89478 | enst00000522335 | sg00000158106 | rhpn1-202 | 8 | 143368988 | 143384218 | + | lnc_RNA | retained_intron |
| 99827 | enst00000522899 | sg00000158106 | rhpn1-203 | 8 | 143379337 | 143382779 | + | lnc_RNA | retained_intron |
| -117436 | enst00000414417 | sg00000176956 | ly6h-202 | 8 | 143157914 | 143160711 | - | mRNA | protein_coding |
| -117511 | enst00000615409 | sg00000176956 | ly6h-205 | 8 | 143157915 | 143160636 | - | mRNA | protein_coding |
| -117819 | enst00000342752 | sg00000176956 | ly6h-201 | 8 | 143157914 | 143160328 | - | mRNA | protein_coding |
| -117838 | enst00000479685 | sg00000176956 | ly6h-204 | 8 | 143157914 | 143160309 | - | lnc_RNA | retained_intron |
| -118107 | enst00000430474 | sg00000176956 | ly6h-203 | 8 | 143157914 | 143160040 | - | mRNA | protein_coding |
| 133239 | enst00000523002 | sg00000253931 | ac105118.1-201 | 8 | 143412749 | 143417054 | + | lnc_RNA | lncrna |
| 138169 | enst00000519762 | sg00000254338 | mafa-as1-201 | 8 | 143417679 | 143419150 | + | lnc_RNA | lncrna |
| 150388 | enst00000528185 | sg00000182759 | mafa-202 | 8 | 143419182 | 143429898 | - | lnc_RNA | processed_transcript |
| 151222 | enst00000333480 | sg00000182759 | mafa-201 | 8 | 143428064 | 143430732 | - | mRNA | protein_coding |
| -197690 | enst00000562505 | sg00000261667 | ly6l-201 | 8 | 143080457 | 143083001 | + | mRNA | protein_coding |
| -211560 | enst00000485679 | sg00000243328 | ac083982.1-201 | 8 | 143065915 | 143066587 | - | pseudogenic_transcript | processed_pseudogene |
| -220331 | enst00000507976 | sg00000250115 | ak3p2-201 | 8 | 143057060 | 143057816 | - | pseudogenic_transcript | processed_pseudogene |
| 228330 | enst00000528401 | sg00000014164 | zc3h3-202 | 8 | 143484497 | 143507840 | - | mRNA | protein_coding |
| -234939 | enst00000520786 | sg00000177335 | c8orf31-204 | 8 | 143043208 | 143047984 | + | lnc_RNA | retained_intron |
| -235145 | enst00000622366 | sg00000177335 | c8orf31-208 | 8 | 143043002 | 143049252 | + | lnc_RNA | lncrna |
| -238819 | enst00000669519 | sg00000177335 | c8orf31-210 | 8 | 143039328 | 143060684 | + | lnc_RNA | lncrna |
| -238852 | enst00000519775 | sg00000177335 | c8orf31-203 | 8 | 143039295 | 143059942 | + | lnc_RNA | lncrna |
| -238865 | enst00000665431 | sg00000177335 | c8orf31-209 | 8 | 143039282 | 143045832 | + | lnc_RNA | lncrna |
| -238885 | enst00000395172 | sg00000177335 | c8orf31-201 | 8 | 143039262 | 143054303 | + | lnc_RNA | lncrna |
| -238886 | enst00000523099 | sg00000177335 | c8orf31-205 | 8 | 143039261 | 143043243 | + | lnc_RNA | retained_intron |
| -238886 | enst00000523766 | sg00000177335 | c8orf31-206 | 8 | 143039261 | 143042519 | + | lnc_RNA | lncrna |
| -238886 | enst00000524181 | sg00000177335 | c8orf31-207 | 8 | 143039261 | 143053444 | + | lnc_RNA | lncrna |
| -238938 | enst00000517653 | sg00000177335 | c8orf31-202 | 8 | 143039209 | 143053938 | + | lnc_RNA | lncrna |
| -255598 | enst00000519615 | sg00000160932 | ly6e-206 | 8 | 143022549 | 143023830 | + | lnc_RNA | processed_transcript |
| -259590 | enst00000522024 | sg00000160932 | ly6e-212 | 8 | 143018557 | 143021892 | + | mRNA | protein_coding |
| -259594 | enst00000523847 | sg00000160932 | ly6e-215 | 8 | 143018553 | 143023832 | + | mRNA | protein_coding |
| -259595 | enst00000519546 | sg00000160932 | ly6e-204 | 8 | 143018552 | 143022255 | + | mRNA | protein_coding |
| -259601 | enst00000521182 | sg00000160932 | ly6e-210 | 8 | 143018546 | 143022409 | + | mRNA | protein_coding |
| -259603 | enst00000519611 | sg00000160932 | ly6e-205 | 8 | 143018544 | 143021800 | + | mRNA | protein_coding |
| -259605 | enst00000522971 | sg00000160932 | ly6e-214 | 8 | 143018542 | 143022182 | + | mRNA | protein_coding |
| -259618 | enst00000522528 | sg00000160932 | ly6e-213 | 8 | 143018529 | 143021924 | + | mRNA | protein_coding |
| -259618 | enst00000521003 | sg00000160932 | ly6e-209 | 8 | 143018529 | 143021902 | + | mRNA | protein_coding |
| -259618 | enst00000292494 | sg00000160932 | ly6e-201 | 8 | 143018529 | 143022409 | + | mRNA | protein_coding |
| -259619 | enst00000520531 | sg00000160932 | ly6e-208 | 8 | 143018528 | 143021640 | + | mRNA | protein_coding |
| -259619 | enst00000520466 | sg00000160932 | ly6e-207 | 8 | 143018528 | 143022409 | + | mRNA | protein_coding |
| -259630 | enst00000521699 | sg00000160932 | ly6e-211 | 8 | 143018517 | 143022411 | + | mRNA | protein_coding |
| -259664 | enst00000429120 | sg00000160932 | ly6e-202 | 8 | 143018483 | 143022410 | + | mRNA | protein_coding |
| -259710 | enst00000518831 | sg00000247317 | ly6e-dt-204 | 8 | 143016666 | 143018437 | - | lnc_RNA | lncrna |
| -259750 | enst00000502167 | sg00000247317 | ly6e-dt-201 | 8 | 143007753 | 143018397 | - | lnc_RNA | lncrna |
| -259757 | enst00000517833 | sg00000247317 | ly6e-dt-202 | 8 | 142981738 | 143018390 | - | lnc_RNA | lncrna |
| -259766 | enst00000522060 | sg00000247317 | ly6e-dt-205 | 8 | 142982049 | 143018381 | - | lnc_RNA | lncrna |
| -260165 | enst00000517503 | sg00000160932 | ly6e-203 | 8 | 143017982 | 143022410 | + | mRNA | protein_coding |
| 261937 | enst00000262577 | sg00000014164 | zc3h3-201 | 8 | 143437659 | 143541447 | - | mRNA | protein_coding |
| 262138 | enst00000653168 | sg00000287576 | ac067930.8-201 | 8 | 143541648 | 143545128 | + | lnc_RNA | lncrna |
| 262600 | enst00000408472 | sg00000275558 | rn7skp175-201 | 8 | 143542110 | 143542398 | + | ncRNA | misc_rna |
| -265570 | enst00000518024 | sg00000247317 | ly6e-dt-203 | 8 | 142994876 | 143012577 | - | lnc_RNA | lncrna |
| 270219 | enst00000530600 | sg00000254859 | ac067930.3-201 | 8 | 143541973 | 143549729 | - | lnc_RNA | lncrna |
| 273697 | enst00000526406 | sg00000104518 | gsdmd-206 | 8 | 143553207 | 143563062 | + | mRNA | protein_coding |
| 274197 | enst00000529854 | sg00000104518 | gsdmd-209 | 8 | 143553707 | 143559479 | + | mRNA | protein_coding |
| 278376 | enst00000533348 | sg00000104518 | gsdmd-213 | 8 | 143557886 | 143560686 | + | mRNA | protein_coding |
| 278403 | enst00000533063 | sg00000104518 | gsdmd-212 | 8 | 143557913 | 143563062 | + | mRNA | protein_coding |
| 278828 | enst00000531184 | sg00000104518 | gsdmd-211 | 8 | 143558338 | 143563055 | + | lnc_RNA | retained_intron |
| 278836 | enst00000262580 | sg00000104518 | gsdmd-201 | 8 | 143558346 | 143563062 | + | mRNA | protein_coding |
| 278844 | enst00000525721 | sg00000104518 | gsdmd-204 | 8 | 143558354 | 143559902 | + | mRNA | protein_coding |
| 278861 | enst00000534018 | sg00000104518 | gsdmd-215 | 8 | 143558371 | 143561788 | + | mRNA | protein_coding |
| 279048 | enst00000533888 | sg00000104518 | gsdmd-214 | 8 | 143558558 | 143560653 | + | mRNA | protein_coding |
| 279179 | enst00000524846 | sg00000104518 | gsdmd-202 | 8 | 143558689 | 143563059 | + | lnc_RNA | retained_intron |
| 280530 | enst00000528475 | sg00000104518 | gsdmd-208 | 8 | 143560040 | 143563059 | + | lnc_RNA | retained_intron |
| 281118 | enst00000526469 | sg00000104518 | gsdmd-207 | 8 | 143560628 | 143563032 | + | lnc_RNA | retained_intron |
| 281351 | enst00000526051 | sg00000104518 | gsdmd-205 | 8 | 143560861 | 143561878 | + | lnc_RNA | retained_intron |
| 281848 | enst00000534602 | sg00000104518 | gsdmd-216 | 8 | 143561358 | 143562362 | + | lnc_RNA | retained_intron |
| 282220 | enst00000531173 | sg00000104518 | gsdmd-210 | 8 | 143561730 | 143563027 | + | lnc_RNA | retained_intron |
| -282297 | enst00000518493 | sg00000253971 | cdc42p3-201 | 8 | 142995850 | 142996482 | + | pseudogenic_transcript | processed_pseudogene |
| 282540 | enst00000525208 | sg00000104518 | gsdmd-203 | 8 | 143562050 | 143563062 | + | mRNA | non_stop_decay |
| 287601 | enst00000533120 | sg00000204839 | mroh6-207 | 8 | 143566211 | 143567111 | - | lnc_RNA | retained_intron |
| 288376 | enst00000532704 | sg00000204839 | mroh6-204 | 8 | 143566195 | 143567886 | - | lnc_RNA | processed_transcript |
| 289155 | enst00000533582 | sg00000204839 | mroh6-209 | 8 | 143568153 | 143568665 | - | lnc_RNA | processed_transcript |
| 289247 | enst00000533210 | sg00000204839 | mroh6-208 | 8 | 143566192 | 143568757 | - | lnc_RNA | retained_intron |
| 289333 | enst00000533083 | sg00000204839 | mroh6-206 | 8 | 143567369 | 143568843 | - | lnc_RNA | retained_intron |
| 289344 | enst00000524906 | sg00000204839 | mroh6-202 | 8 | 143566198 | 143568854 | - | mRNA | protein_coding |
| 289350 | enst00000532862 | sg00000204839 | mroh6-205 | 8 | 143567372 | 143568860 | - | mRNA | protein_coding |
| 289377 | enst00000534459 | sg00000204839 | mroh6-211 | 8 | 143566302 | 143568887 | - | mRNA | protein_coding |
| 290240 | enst00000533679 | sg00000204839 | mroh6-210 | 8 | 143566192 | 143569750 | - | mRNA | protein_coding |
| 293238 | enst00000529971 | sg00000204839 | mroh6-203 | 8 | 143568587 | 143572748 | - | mRNA | protein_coding |
| 293262 | enst00000398882 | sg00000204839 | mroh6-201 | 8 | 143566192 | 143572772 | - | mRNA | protein_coding |
| 293980 | enst00000531730 | sg00000255050 | ac067930.4-201 | 8 | 143573490 | 143577397 | + | lnc_RNA | lncrna |
| 295813 | enst00000529179 | sg00000147813 | naprt-213 | 8 | 143574785 | 143575323 | - | lnc_RNA | retained_intron |
| 295905 | enst00000498076 | sg00000147813 | naprt-211 | 8 | 143574786 | 143575415 | - | lnc_RNA | retained_intron |
| 296652 | enst00000460623 | sg00000147813 | naprt-205 | 8 | 143574785 | 143576162 | - | mRNA | non_stop_decay |
| 297291 | enst00000464332 | sg00000147813 | naprt-207 | 8 | 143574787 | 143576801 | - | lnc_RNA | retained_intron |
| 298405 | enst00000488096 | sg00000147813 | naprt-209 | 8 | 143575600 | 143577915 | - | lnc_RNA | retained_intron |
| 298648 | enst00000532645 | sg00000147813 | naprt-214 | 8 | 143575623 | 143578158 | - | mRNA | nonsense_mediated_decay |
| 298683 | enst00000480946 | sg00000147813 | naprt-208 | 8 | 143576440 | 143578193 | - | lnc_RNA | retained_intron |
| 298708 | enst00000525583 | sg00000147813 | naprt-212 | 8 | 143575432 | 143578218 | - | mRNA | nonsense_mediated_decay |
| 298811 | enst00000462059 | sg00000147813 | naprt-206 | 8 | 143577267 | 143578321 | - | lnc_RNA | retained_intron |
| 298820 | enst00000449291 | sg00000147813 | naprt-204 | 8 | 143574785 | 143578330 | - | mRNA | protein_coding |
| 298829 | enst00000340490 | sg00000147813 | naprt-201 | 8 | 143574787 | 143578339 | - | mRNA | non_stop_decay |
| 298833 | enst00000426292 | sg00000147813 | naprt-202 | 8 | 143574787 | 143578343 | - | mRNA | protein_coding |
| 298833 | enst00000435154 | sg00000147813 | naprt-203 | 8 | 143574785 | 143578343 | - | mRNA | protein_coding |
| 298848 | enst00000623257 | sg00000279605 | ac067930.5-201 | 8 | 143578358 | 143583304 | + | unconfirmed_transcript | tec |
| 299139 | enst00000491904 | sg00000147813 | naprt-210 | 8 | 143576943 | 143578649 | - | lnc_RNA | retained_intron |
| 300126 | enst00000529247 | sg00000254741 | ac067930.1-201 | 8 | 143579636 | 143580670 | + | lnc_RNA | lncrna |
| 301127 | enst00000529576 | sg00000104529 | eef1d-227 | 8 | 143579728 | 143580637 | - | mRNA | protein_coding |
| 301230 | enst00000530109 | sg00000104529 | eef1d-229 | 8 | 143579728 | 143580740 | - | mRNA | protein_coding |
| 304741 | enst00000527741 | sg00000104529 | eef1d-219 | 8 | 143579728 | 143584251 | - | lnc_RNA | retained_intron |
| 307307 | enst00000528382 | sg00000104529 | eef1d-221 | 8 | 143580079 | 143586817 | - | mRNA | protein_coding |
| 308054 | enst00000530445 | sg00000104529 | eef1d-232 | 8 | 143580620 | 143587564 | - | mRNA | protein_coding |
| 309712 | enst00000530616 | sg00000104529 | eef1d-234 | 8 | 143580513 | 143589222 | - | mRNA | protein_coding |
| 309806 | enst00000525223 | sg00000104529 | eef1d-210 | 8 | 143586729 | 143589316 | - | mRNA | protein_coding |
| 310950 | enst00000532741 | sg00000104529 | eef1d-246 | 8 | 143579728 | 143590460 | - | mRNA | protein_coding |
| 311383 | enst00000524883 | sg00000104529 | eef1d-208 | 8 | 143589540 | 143590893 | - | mRNA | protein_coding |
| 312659 | enst00000528519 | sg00000104529 | eef1d-222 | 8 | 143589610 | 143592169 | - | mRNA | protein_coding |
| 313383 | enst00000526135 | sg00000104529 | eef1d-214 | 8 | 143589922 | 143592893 | - | mRNA | protein_coding |
| 316619 | enst00000531281 | sg00000104529 | eef1d-237 | 8 | 143589311 | 143596129 | - | mRNA | protein_coding |
| 316835 | enst00000531670 | sg00000104529 | eef1d-239 | 8 | 143589545 | 143596345 | - | mRNA | protein_coding |
| 317244 | enst00000532543 | sg00000104529 | eef1d-244 | 8 | 143586729 | 143596754 | - | mRNA | protein_coding |
| 317595 | enst00000531953 | sg00000104529 | eef1d-242 | 8 | 143589934 | 143597105 | - | mRNA | protein_coding |
| 317601 | enst00000526133 | sg00000104529 | eef1d-213 | 8 | 143589972 | 143597111 | - | mRNA | protein_coding |
| 317852 | enst00000534380 | sg00000104529 | eef1d-253 | 8 | 143580034 | 143597362 | - | mRNA | protein_coding |
| 317855 | enst00000533494 | sg00000104529 | eef1d-248 | 8 | 143580613 | 143597365 | - | mRNA | protein_coding |
| 317870 | enst00000531218 | sg00000104529 | eef1d-236 | 8 | 143580522 | 143597380 | - | mRNA | protein_coding |
| 317871 | enst00000525695 | sg00000104529 | eef1d-212 | 8 | 143586032 | 143597381 | - | lnc_RNA | retained_intron |
| 317874 | enst00000534232 | sg00000104529 | eef1d-251 | 8 | 143580663 | 143597384 | - | lnc_RNA | retained_intron |
| 317877 | enst00000529007 | sg00000104529 | eef1d-224 | 8 | 143579729 | 143597387 | - | mRNA | nonsense_mediated_decay |
| 317878 | enst00000526786 | sg00000104529 | eef1d-217 | 8 | 143580389 | 143597388 | - | lnc_RNA | retained_intron |
| 317878 | enst00000317198 | sg00000104529 | eef1d-201 | 8 | 143579697 | 143597388 | - | mRNA | protein_coding |
| 317883 | enst00000526340 | sg00000104529 | eef1d-215 | 8 | 143586219 | 143597393 | - | mRNA | protein_coding |
| 317884 | enst00000533204 | sg00000104529 | eef1d-247 | 8 | 143580506 | 143597394 | - | mRNA | protein_coding |
| 317886 | enst00000532400 | sg00000104529 | eef1d-243 | 8 | 143579722 | 143597396 | - | mRNA | protein_coding |
| 317887 | enst00000529516 | sg00000104529 | eef1d-226 | 8 | 143580642 | 143597397 | - | mRNA | protein_coding |
| 317889 | enst00000534377 | sg00000104529 | eef1d-252 | 8 | 143580186 | 143597399 | - | mRNA | protein_coding |
| 317890 | enst00000530848 | sg00000104529 | eef1d-235 | 8 | 143580564 | 143597400 | - | lnc_RNA | retained_intron |
| 317890 | enst00000531621 | sg00000104529 | eef1d-238 | 8 | 143579729 | 143597400 | - | mRNA | protein_coding |
| 317892 | enst00000530191 | sg00000104529 | eef1d-230 | 8 | 143580506 | 143597402 | - | mRNA | protein_coding |
| 317894 | enst00000524397 | sg00000104529 | eef1d-206 | 8 | 143580010 | 143597404 | - | mRNA | nonsense_mediated_decay |
| 317901 | enst00000524900 | sg00000104529 | eef1d-209 | 8 | 143589894 | 143597411 | - | mRNA | protein_coding |
| 317903 | enst00000526838 | sg00000104529 | eef1d-218 | 8 | 143579728 | 143597413 | - | mRNA | protein_coding |
| 317903 | enst00000531931 | sg00000104529 | eef1d-241 | 8 | 143586740 | 143597413 | - | mRNA | protein_coding |
| 317903 | enst00000534475 | sg00000104529 | eef1d-254 | 8 | 143589988 | 143597413 | - | mRNA | protein_coding |
| 317904 | enst00000531770 | sg00000104529 | eef1d-240 | 8 | 143592654 | 143597414 | - | lnc_RNA | processed_transcript |
| 317905 | enst00000534804 | sg00000104529 | eef1d-255 | 8 | 143589877 | 143597415 | - | mRNA | protein_coding |
| 317905 | enst00000530545 | sg00000104529 | eef1d-233 | 8 | 143589830 | 143597415 | - | mRNA | protein_coding |
| 317905 | enst00000530306 | sg00000104529 | eef1d-231 | 8 | 143589695 | 143597415 | - | mRNA | protein_coding |
| 317905 | enst00000529832 | sg00000104529 | eef1d-228 | 8 | 143589644 | 143597415 | - | mRNA | protein_coding |
| 317905 | enst00000532596 | sg00000104529 | eef1d-245 | 8 | 143589511 | 143597415 | - | mRNA | protein_coding |
| 317905 | enst00000528303 | sg00000104529 | eef1d-220 | 8 | 143590018 | 143597415 | - | mRNA | protein_coding |
| 317905 | enst00000525261 | sg00000104529 | eef1d-211 | 8 | 143589838 | 143597415 | - | mRNA | protein_coding |
| 317905 | enst00000524624 | sg00000104529 | eef1d-207 | 8 | 143579736 | 143597415 | - | mRNA | protein_coding |
| 317905 | enst00000442189 | sg00000104529 | eef1d-205 | 8 | 143579728 | 143597415 | - | mRNA | protein_coding |
| 317915 | enst00000528610 | sg00000104529 | eef1d-223 | 8 | 143579728 | 143597425 | - | mRNA | protein_coding |
| 317918 | enst00000533833 | sg00000104529 | eef1d-250 | 8 | 143579728 | 143597428 | - | mRNA | nonsense_mediated_decay |
| 317932 | enst00000526710 | sg00000104529 | eef1d-216 | 8 | 143589181 | 143597442 | - | mRNA | protein_coding |
| 318165 | enst00000419152 | sg00000104529 | eef1d-203 | 8 | 143579697 | 143597675 | - | mRNA | protein_coding |
| 318165 | enst00000423316 | sg00000104529 | eef1d-204 | 8 | 143579697 | 143597675 | - | mRNA | protein_coding |
| 318165 | enst00000618139 | sg00000104529 | eef1d-256 | 8 | 143580019 | 143597675 | - | mRNA | protein_coding |
| 318169 | enst00000395119 | sg00000104529 | eef1d-202 | 8 | 143579728 | 143597679 | - | mRNA | protein_coding |
| 318234 | enst00000529272 | sg00000104529 | eef1d-225 | 8 | 143579728 | 143597744 | - | mRNA | protein_coding |
| 318321 | enst00000504548 | sg00000179886 | tigd5-201 | 8 | 143597831 | 143603224 | + | mRNA | protein_coding |
| 320031 | enst00000533749 | sg00000104529 | eef1d-249 | 8 | 143581079 | 143599541 | - | mRNA | protein_coding |
| 328939 | enst00000462036 | sg00000104524 | pycr3-205 | 8 | 143606116 | 143608449 | - | mRNA | protein_coding |
| 330047 | enst00000482616 | sg00000104524 | pycr3-206 | 8 | 143606468 | 143609557 | - | lnc_RNA | retained_intron |
| 330059 | enst00000447926 | sg00000104524 | pycr3-204 | 8 | 143605335 | 143609569 | - | mRNA | nonsense_mediated_decay |
| 330059 | enst00000433751 | sg00000104524 | pycr3-203 | 8 | 143605486 | 143609569 | - | mRNA | protein_coding |
| 330065 | enst00000495276 | sg00000104524 | pycr3-207 | 8 | 143603210 | 143609575 | - | mRNA | protein_coding |
| 330104 | enst00000220966 | sg00000104524 | pycr3-201 | 8 | 143603913 | 143609614 | - | mRNA | protein_coding |
| 330263 | enst00000377579 | sg00000104524 | pycr3-202 | 8 | 143605547 | 143609773 | - | mRNA | protein_coding |
| 333881 | enst00000527677 | sg00000104522 | tsta3-207 | 8 | 143612621 | 143613391 | - | lnc_RNA | retained_intron |
| 334097 | enst00000524719 | sg00000104522 | tsta3-202 | 8 | 143612618 | 143613607 | - | mRNA | protein_coding |
| 334875 | enst00000528920 | sg00000104522 | tsta3-208 | 8 | 143612618 | 143614385 | - | lnc_RNA | retained_intron |
| 336954 | enst00000527006 | sg00000104522 | tsta3-205 | 8 | 143614863 | 143616464 | - | mRNA | protein_coding |
| 337216 | enst00000525274 | sg00000104522 | tsta3-203 | 8 | 143614405 | 143616726 | - | lnc_RNA | retained_intron |
| 337790 | enst00000533817 | sg00000104522 | tsta3-216 | 8 | 143614322 | 143617300 | - | mRNA | protein_coding |
| 337964 | enst00000529048 | sg00000104522 | tsta3-209 | 8 | 143613529 | 143617474 | - | mRNA | protein_coding |
| 337972 | enst00000529064 | sg00000104522 | tsta3-210 | 8 | 143612618 | 143617482 | - | mRNA | protein_coding |
| 337994 | enst00000531473 | sg00000104522 | tsta3-214 | 8 | 143612618 | 143617504 | - | lnc_RNA | retained_intron |
| 337997 | enst00000527549 | sg00000104522 | tsta3-206 | 8 | 143614647 | 143617507 | - | lnc_RNA | retained_intron |
| 338001 | enst00000530474 | sg00000104522 | tsta3-212 | 8 | 143614364 | 143617511 | - | mRNA | nonsense_mediated_decay |
| 338022 | enst00000532308 | sg00000104522 | tsta3-215 | 8 | 143613770 | 143617532 | - | lnc_RNA | retained_intron |
| 338039 | enst00000425753 | sg00000104522 | tsta3-201 | 8 | 143612618 | 143617549 | - | mRNA | protein_coding |
| 338039 | enst00000529899 | sg00000104522 | tsta3-211 | 8 | 143615886 | 143617549 | - | lnc_RNA | retained_intron |
| 338042 | enst00000531006 | sg00000104522 | tsta3-213 | 8 | 143615943 | 143617552 | - | lnc_RNA | retained_intron |
| 338538 | enst00000526290 | sg00000104522 | tsta3-204 | 8 | 143614821 | 143618048 | - | mRNA | protein_coding |
| 354246 | enst00000524808 | sg00000254812 | ac067930.2-201 | 8 | 143632071 | 143633756 | - | lnc_RNA | lncrna |
| 356503 | enst00000526926 | sg00000183309 | znf623-203 | 8 | 143636013 | 143652376 | + | mRNA | protein_coding |
| 356652 | enst00000458270 | sg00000183309 | znf623-201 | 8 | 143636162 | 143652376 | + | mRNA | protein_coding |
| -360304 | enst00000323110 | sg00000179142 | cyp11b2-201 | 8 | 142910559 | 142917843 | - | mRNA | protein_coding |
| 370150 | enst00000501748 | sg00000183309 | znf623-202 | 8 | 143649660 | 143656418 | + | mRNA | protein_coding |
| -398301 | enst00000314111 | sg00000160882 | cyp11b1-202 | 8 | 142872356 | 142879846 | - | lnc_RNA | retained_intron |
| -398323 | enst00000517471 | sg00000160882 | cyp11b1-204 | 8 | 142873824 | 142879824 | - | mRNA | protein_coding |
| -398325 | enst00000292427 | sg00000160882 | cyp11b1-201 | 8 | 142872354 | 142879822 | - | mRNA | protein_coding |
| -398327 | enst00000377675 | sg00000160882 | cyp11b1-203 | 8 | 142873825 | 142879820 | - | mRNA | protein_coding |
| -402350 | enst00000519285 | sg00000160882 | cyp11b1-205 | 8 | 142872357 | 142875797 | - | mRNA | protein_coding |
| 404942 | enst00000525185 | sg00000181135 | znf707-205 | 8 | 143684452 | 143693830 | + | mRNA | nonsense_mediated_decay |
| 404942 | enst00000532003 | sg00000181135 | znf707-221 | 8 | 143684452 | 143691474 | + | lnc_RNA | retained_intron |
| 404943 | enst00000534303 | sg00000181135 | znf707-228 | 8 | 143684453 | 143693839 | + | mRNA | protein_coding |
| 404946 | enst00000533031 | sg00000181135 | znf707-226 | 8 | 143684456 | 143695356 | + | mRNA | nonsense_mediated_decay |
| 404952 | enst00000525619 | sg00000181135 | znf707-207 | 8 | 143684462 | 143690419 | + | lnc_RNA | retained_intron |
| 404952 | enst00000528456 | sg00000181135 | znf707-214 | 8 | 143684462 | 143693772 | + | mRNA | nonsense_mediated_decay |
| 404963 | enst00000529833 | sg00000181135 | znf707-215 | 8 | 143684473 | 143691694 | + | mRNA | protein_coding |
| 404963 | enst00000530574 | sg00000181135 | znf707-217 | 8 | 143684473 | 143693827 | + | mRNA | protein_coding |
| 404969 | enst00000527293 | sg00000181135 | znf707-211 | 8 | 143684479 | 143693756 | + | mRNA | nonsense_mediated_decay |
| 404969 | enst00000358656 | sg00000181135 | znf707-201 | 8 | 143684479 | 143695385 | + | mRNA | protein_coding |
| 404969 | enst00000531985 | sg00000181135 | znf707-220 | 8 | 143684479 | 143693723 | + | mRNA | nonsense_mediated_decay |
| 404971 | enst00000442058 | sg00000181135 | znf707-203 | 8 | 143684481 | 143691700 | + | mRNA | protein_coding |
| 404971 | enst00000525538 | sg00000181135 | znf707-206 | 8 | 143684481 | 143691914 | + | lnc_RNA | retained_intron |
| 404971 | enst00000533254 | sg00000181135 | znf707-227 | 8 | 143684481 | 143691393 | + | lnc_RNA | retained_intron |
| 404972 | enst00000532571 | sg00000181135 | znf707-225 | 8 | 143684482 | 143690099 | + | lnc_RNA | processed_transcript |
| 404972 | enst00000534589 | sg00000181135 | znf707-229 | 8 | 143684482 | 143691811 | + | lnc_RNA | retained_intron |
| 404973 | enst00000531811 | sg00000181135 | znf707-219 | 8 | 143684483 | 143693748 | + | lnc_RNA | processed_transcript |
| 404974 | enst00000527561 | sg00000181135 | znf707-212 | 8 | 143684484 | 143712737 | + | mRNA | nonsense_mediated_decay |
| 404974 | enst00000532486 | sg00000181135 | znf707-224 | 8 | 143684484 | 143695384 | + | lnc_RNA | retained_intron |
| 404977 | enst00000526970 | sg00000181135 | znf707-210 | 8 | 143684487 | 143691199 | + | mRNA | protein_coding |
| 404982 | enst00000532158 | sg00000181135 | znf707-222 | 8 | 143684492 | 143695357 | + | mRNA | protein_coding |
| 404995 | enst00000528134 | sg00000181135 | znf707-213 | 8 | 143684505 | 143691426 | + | lnc_RNA | retained_intron |
| 404997 | enst00000525862 | sg00000181135 | znf707-208 | 8 | 143684507 | 143693703 | + | mRNA | nonsense_mediated_decay |
| 404998 | enst00000532205 | sg00000181135 | znf707-223 | 8 | 143684508 | 143695380 | + | mRNA | protein_coding |
| 404998 | enst00000526315 | sg00000181135 | znf707-209 | 8 | 143684508 | 143693959 | + | mRNA | protein_coding |
| 405000 | enst00000530341 | sg00000181135 | znf707-216 | 8 | 143684510 | 143693711 | + | lnc_RNA | processed_transcript |
| 409149 | enst00000418203 | sg00000181135 | znf707-202 | 8 | 143688659 | 143695380 | + | mRNA | protein_coding |
| 412005 | enst00000531254 | sg00000181135 | znf707-218 | 8 | 143691515 | 143694029 | + | lnc_RNA | retained_intron |
| 416644 | enst00000531565 | sg00000181097 | ac105219.1-201 | 8 | 143696154 | 143698413 | + | lnc_RNA | lncrna |
| -419793 | enst00000523947 | sg00000253421 | znhit1p1-201 | 8 | 142858354 | 142858797 | + | pseudogenic_transcript | processed_pseudogene |
| 428541 | enst00000508587 | sg00000181135 | znf707-204 | 8 | 143708051 | 143713898 | + | lnc_RNA | processed_transcript |
| 428599 | enst00000542437 | sg00000255181 | ccdc166-201 | 8 | 143706694 | 143708109 | - | mRNA | protein_coding |
| 434074 | enst00000527579 | sg00000254574 | ac105219.3-201 | 8 | 143709007 | 143713584 | - | lnc_RNA | lncrna |
| 436830 | enst00000484654 | sg00000181085 | mapk15-206 | 8 | 143716340 | 143722458 | + | lnc_RNA | retained_intron |
| 436839 | enst00000475376 | sg00000181085 | mapk15-205 | 8 | 143716349 | 143718302 | + | lnc_RNA | retained_intron |
| 436839 | enst00000338033 | sg00000181085 | mapk15-201 | 8 | 143716349 | 143722458 | + | mRNA | protein_coding |
| 436868 | enst00000395108 | sg00000181085 | mapk15-203 | 8 | 143716378 | 143720591 | + | mRNA | protein_coding |
| 436868 | enst00000395107 | sg00000181085 | mapk15-202 | 8 | 143716378 | 143720291 | + | mRNA | protein_coding |
| 439381 | enst00000527908 | sg00000254548 | ac105219.2-201 | 8 | 143718246 | 143718891 | - | lnc_RNA | lncrna |
| 440682 | enst00000533830 | sg00000181085 | mapk15-208 | 8 | 143720192 | 143721356 | + | lnc_RNA | retained_intron |
| 441188 | enst00000461928 | sg00000181085 | mapk15-204 | 8 | 143720698 | 143721859 | + | lnc_RNA | retained_intron |
| 442038 | enst00000528175 | sg00000181085 | mapk15-207 | 8 | 143721548 | 143722132 | + | lnc_RNA | retained_intron |
| -443207 | enst00000519411 | sg00000253728 | ac083841.3-202 | 8 | 142834138 | 142834940 | - | lnc_RNA | lncrna |
| -443346 | enst00000220940 | sg00000104499 | gml-201 | 8 | 142834801 | 142846851 | + | mRNA | protein_coding |
| -443359 | enst00000519281 | sg00000253728 | ac083841.3-201 | 8 | 142834138 | 142834788 | - | lnc_RNA | lncrna |
| -443900 | enst00000522728 | sg00000104499 | gml-202 | 8 | 142834247 | 142916506 | + | mRNA | protein_coding |
| 449130 | enst00000395103 | sg00000180921 | fam83h-202 | 8 | 143723934 | 143728640 | - | mRNA | nonsense_mediated_decay |
| 453643 | enst00000583819 | sg00000265660 | mir4664-201 | 8 | 143733083 | 143733153 | - | miRNA | mirna |
| 454269 | enst00000388913 | sg00000180921 | fam83h-201 | 8 | 143723933 | 143733779 | - | mRNA | protein_coding |
| 454630 | enst00000533004 | sg00000203499 | iqank1-203 | 8 | 143734140 | 143746337 | + | mRNA | protein_coding |
| 454630 | enst00000527139 | sg00000203499 | iqank1-201 | 8 | 143734140 | 143790644 | + | mRNA | protein_coding |
| 458724 | enst00000650760 | sg00000180921 | fam83h-203 | 8 | 143723933 | 143738234 | - | mRNA | protein_coding |
| 459886 | enst00000534398 | sg00000203499 | iqank1-205 | 8 | 143739396 | 143742135 | + | lnc_RNA | processed_transcript |
| -472005 | enst00000637396 | sg00000283686 | ac083841.4-201 | 8 | 142797624 | 142806142 | - | pseudogenic_transcript | unprocessed_pseudogene |
| -491608 | enst00000301263 | sg00000167656 | ly6d-201 | 8 | 142784882 | 142786539 | - | mRNA | protein_coding |
| -491618 | enst00000518434 | sg00000167656 | ly6d-202 | 8 | 142784882 | 142786529 | - | lnc_RNA | processed_transcript |
| -491843 | enst00000518469 | sg00000167656 | ly6d-203 | 8 | 142784882 | 142786304 | - | lnc_RNA | retained_intron |
| -492215 | enst00000518884 | sg00000167656 | ly6d-204 | 8 | 142785295 | 142785932 | - | lnc_RNA | retained_intron |
| 492360 | enst00000529743 | sg00000254973 | ac105219.4-201 | 8 | 143758153 | 143771870 | - | lnc_RNA | lncrna |
| -492773 | enst00000510610 | sg00000253715 | ac083841.2-201 | 8 | 142785374 | 142812120 | + | lnc_RNA | lncrna |
| -499923 | enst00000615007 | sg00000284505 | lynx1-slurp2-202 | 8 | 142764338 | 142778224 | - | mRNA | protein_coding |
Source file: /hps/research1/birney/users/adrien/analyses/cancer_DNA_promethion/run_1_2_3_4/DNA_pipeline_2/results/methylation/pycometh_meth_comp_CGI_3/out.tsv.gz
MD5 hash: 9aa0e3f69cb4e12345c3758eb68a5efc