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CpG interval report generated on 20/05/20 with pycoMeth 0.4.6
Interval details
| pvalue rank | chromosome | start | end | length | number of samples | number of CpGs | pvalue | adjusted pvalue |
|---|---|---|---|---|---|---|---|---|
| #48 | 19 | 3648956 | 3650054 | 1098 | 3 | 51 | 5.49943e-22 | 1.13941e-19 |
Methylation log-likelihood ratio by CpG position
Distribution of CpG methylation log-likelihood ratio by sample
Closest transcripts TSS
| distance to tss | transcript id | gene id | transcript name | chromosome | start | end | strand | feature type | transcript biotype |
|---|---|---|---|---|---|---|---|---|---|
| 0 | enst00000592530 | sg00000186111 | pip5k1c-206 | 19 | 3644089 | 3649429 | - | lnc_RNA | processed_transcript |
| 17290 | enst00000636612 | sg00000186111 | pip5k1c-207 | 19 | 3661930 | 3667344 | - | lnc_RNA | processed_transcript |
| -22141 | enst00000221899 | sg00000105298 | cactin-201 | 19 | 3610660 | 3626815 | - | mRNA | protein_coding |
| -22141 | enst00000248420 | sg00000105298 | cactin-202 | 19 | 3610650 | 3626815 | - | mRNA | protein_coding |
| -22141 | enst00000585942 | sg00000105298 | cactin-204 | 19 | 3610647 | 3626815 | - | mRNA | nonsense_mediated_decay |
| -22166 | enst00000429344 | sg00000105298 | cactin-203 | 19 | 3610645 | 3626790 | - | mRNA | protein_coding |
| 22528 | enst00000586675 | sg00000267304 | ac004637.1-201 | 19 | 3672582 | 3674295 | + | lnc_RNA | lncrna |
| -27928 | enst00000587175 | sg00000105298 | cactin-205 | 19 | 3611568 | 3621028 | - | lnc_RNA | retained_intron |
| -29765 | enst00000589321 | sg00000105298 | cactin-207 | 19 | 3611568 | 3619191 | - | mRNA | nonsense_mediated_decay |
| -29790 | enst00000588749 | sg00000105298 | cactin-206 | 19 | 3613507 | 3619166 | - | mRNA | protein_coding |
| -32264 | enst00000591978 | sg00000105298 | cactin-209 | 19 | 3614410 | 3616692 | - | lnc_RNA | retained_intron |
| -35418 | enst00000592721 | sg00000105298 | cactin-210 | 19 | 3610645 | 3613538 | - | mRNA | protein_coding |
| -36680 | enst00000591726 | sg00000105298 | cactin-208 | 19 | 3610645 | 3612276 | - | mRNA | protein_coding |
| -41709 | enst00000592274 | sg00000226800 | cactin-as1-201 | 19 | 3607247 | 3613930 | + | lnc_RNA | lncrna |
| -42081 | enst00000375190 | sg00000006638 | tbxa2r-201 | 19 | 3594507 | 3606875 | - | mRNA | protein_coding |
| -42296 | enst00000411851 | sg00000006638 | tbxa2r-202 | 19 | 3594780 | 3606660 | - | mRNA | protein_coding |
| -48287 | enst00000589966 | sg00000006638 | tbxa2r-204 | 19 | 3594552 | 3600669 | - | mRNA | protein_coding |
| -48823 | enst00000587717 | sg00000006638 | tbxa2r-203 | 19 | 3597922 | 3600133 | - | lnc_RNA | processed_transcript |
| 50336 | enst00000537021 | sg00000186111 | pip5k1c-202 | 19 | 3636601 | 3700390 | - | mRNA | protein_coding |
| 50336 | enst00000589578 | sg00000186111 | pip5k1c-205 | 19 | 3636601 | 3700390 | - | mRNA | protein_coding |
| 50387 | enst00000587482 | sg00000186111 | pip5k1c-204 | 19 | 3649891 | 3700441 | - | lnc_RNA | processed_transcript |
| 50408 | enst00000637724 | sg00000186111 | pip5k1c-208 | 19 | 3668404 | 3700462 | - | lnc_RNA | processed_transcript |
| 50411 | enst00000539785 | sg00000186111 | pip5k1c-203 | 19 | 3632876 | 3700465 | - | mRNA | protein_coding |
| 50425 | enst00000335312 | sg00000186111 | pip5k1c-201 | 19 | 3630183 | 3700479 | - | mRNA | protein_coding |
| 58308 | enst00000590545 | sg00000105289 | tjp3-208 | 19 | 3708362 | 3730434 | + | mRNA | protein_coding |
| 58330 | enst00000541714 | sg00000105289 | tjp3-202 | 19 | 3708384 | 3750813 | + | mRNA | protein_coding |
| 58449 | enst00000539908 | sg00000105289 | tjp3-201 | 19 | 3708503 | 3750810 | + | mRNA | protein_coding |
| -63358 | enst00000644946 | sg00000179855 | gipc3-202 | 19 | 3585598 | 3593288 | + | mRNA | protein_coding |
| -63478 | enst00000644452 | sg00000179855 | gipc3-201 | 19 | 3585478 | 3593541 | + | mRNA | protein_coding |
| 71563 | enst00000587912 | sg00000105289 | tjp3-206 | 19 | 3721617 | 3730287 | + | lnc_RNA | retained_intron |
| 71683 | enst00000589378 | sg00000105289 | tjp3-207 | 19 | 3721737 | 3750809 | + | mRNA | protein_coding |
| -72071 | enst00000461099 | sg00000064961 | hmg20b-207 | 19 | 3576885 | 3578444 | + | lnc_RNA | retained_intron |
| -72340 | enst00000585900 | sg00000064961 | hmg20b-216 | 19 | 3576616 | 3579083 | + | mRNA | protein_coding |
| -72604 | enst00000493191 | sg00000064961 | hmg20b-214 | 19 | 3576352 | 3578342 | + | lnc_RNA | retained_intron |
| -73080 | enst00000464304 | sg00000064961 | hmg20b-208 | 19 | 3575876 | 3577022 | + | lnc_RNA | retained_intron |
| -73305 | enst00000487894 | sg00000064961 | hmg20b-212 | 19 | 3575651 | 3578671 | + | lnc_RNA | retained_intron |
| -73414 | enst00000483417 | sg00000064961 | hmg20b-210 | 19 | 3575542 | 3576987 | + | lnc_RNA | retained_intron |
| -74663 | enst00000486028 | sg00000064961 | hmg20b-211 | 19 | 3574293 | 3575964 | + | lnc_RNA | retained_intron |
| -74666 | enst00000586402 | sg00000161091 | mfsd12-206 | 19 | 3571572 | 3574290 | - | lnc_RNA | processed_transcript |
| -75105 | enst00000585814 | sg00000161091 | mfsd12-205 | 19 | 3547291 | 3573851 | - | mRNA | nonsense_mediated_decay |
| -75167 | enst00000591878 | sg00000161091 | mfsd12-212 | 19 | 3547919 | 3573789 | - | lnc_RNA | processed_transcript |
| -75259 | enst00000585741 | sg00000064961 | hmg20b-215 | 19 | 3573697 | 3574161 | + | lnc_RNA | processed_transcript |
| -75327 | enst00000592652 | sg00000161091 | mfsd12-213 | 19 | 3547327 | 3573629 | - | mRNA | protein_coding |
| -75342 | enst00000588626 | sg00000161091 | mfsd12-207 | 19 | 3550988 | 3573614 | - | mRNA | nonsense_mediated_decay |
| -75970 | enst00000262949 | sg00000064961 | hmg20b-201 | 19 | 3572986 | 3577107 | + | mRNA | protein_coding |
| -75977 | enst00000488973 | sg00000064961 | hmg20b-213 | 19 | 3572979 | 3579088 | + | lnc_RNA | retained_intron |
| -75977 | enst00000435022 | sg00000064961 | hmg20b-205 | 19 | 3572979 | 3576602 | + | mRNA | nonsense_mediated_decay |
| -75979 | enst00000453933 | sg00000064961 | hmg20b-206 | 19 | 3572977 | 3575614 | + | mRNA | protein_coding |
| -76008 | enst00000417382 | sg00000064961 | hmg20b-204 | 19 | 3572948 | 3575642 | + | mRNA | protein_coding |
| -76012 | enst00000333651 | sg00000064961 | hmg20b-202 | 19 | 3572944 | 3579083 | + | mRNA | protein_coding |
| -76133 | enst00000470356 | sg00000064961 | hmg20b-209 | 19 | 3572823 | 3574269 | + | lnc_RNA | retained_intron |
| -76179 | enst00000416526 | sg00000064961 | hmg20b-203 | 19 | 3572777 | 3576944 | + | mRNA | protein_coding |
| 78322 | enst00000587686 | sg00000105289 | tjp3-205 | 19 | 3728376 | 3750813 | + | mRNA | protein_coding |
| -80683 | enst00000588553 | sg00000266959 | ac005786.1-201 | 19 | 3568120 | 3568273 | - | pseudogenic_transcript | processed_pseudogene |
| -80997 | enst00000623369 | sg00000279590 | ac005786.4-201 | 19 | 3567278 | 3567959 | - | unconfirmed_transcript | tec |
| -90941 | enst00000592368 | sg00000267231 | ac005786.2-201 | 19 | 3558015 | 3558486 | + | lnc_RNA | lncrna |
| -91370 | enst00000355415 | sg00000161091 | mfsd12-201 | 19 | 3544199 | 3557586 | - | mRNA | protein_coding |
| -91393 | enst00000588918 | sg00000161091 | mfsd12-208 | 19 | 3544199 | 3557563 | - | mRNA | nonsense_mediated_decay |
| -91393 | enst00000389395 | sg00000161091 | mfsd12-202 | 19 | 3544200 | 3557563 | - | mRNA | protein_coding |
| 93609 | enst00000591493 | sg00000105289 | tjp3-209 | 19 | 3743663 | 3747894 | + | lnc_RNA | retained_intron |
| 96589 | enst00000586032 | sg00000105289 | tjp3-203 | 19 | 3746643 | 3750813 | + | mRNA | nonsense_mediated_decay |
| -97911 | enst00000589995 | sg00000161091 | mfsd12-211 | 19 | 3544834 | 3551045 | - | mRNA | protein_coding |
| 99560 | enst00000587641 | sg00000105289 | tjp3-204 | 19 | 3749614 | 3750810 | + | lnc_RNA | processed_transcript |
| -101592 | enst00000615073 | sg00000161091 | mfsd12-214 | 19 | 3538261 | 3547364 | - | mRNA | protein_coding |
| -101625 | enst00000589063 | sg00000161091 | mfsd12-209 | 19 | 3544676 | 3547331 | - | mRNA | protein_coding |
| 101677 | enst00000591678 | sg00000011132 | apba3-207 | 19 | 3751066 | 3751731 | - | lnc_RNA | retained_intron |
| 101840 | enst00000586991 | sg00000011132 | apba3-202 | 19 | 3751250 | 3751894 | - | lnc_RNA | retained_intron |
| -102598 | enst00000398558 | sg00000161091 | mfsd12-203 | 19 | 3538275 | 3546358 | - | mRNA | protein_coding |
| 103786 | enst00000586503 | sg00000267205 | ac005954.2-201 | 19 | 3753840 | 3756517 | + | lnc_RNA | lncrna |
| 104087 | enst00000592826 | sg00000011132 | apba3-208 | 19 | 3752600 | 3754141 | - | lnc_RNA | retained_intron |
| 104746 | enst00000588984 | sg00000011132 | apba3-203 | 19 | 3750819 | 3754800 | - | lnc_RNA | retained_intron |
| -104757 | enst00000589360 | sg00000267436 | ac005786.3-201 | 19 | 3544199 | 3557569 | + | lnc_RNA | lncrna |
| -105574 | enst00000589157 | sg00000161091 | mfsd12-210 | 19 | 3538650 | 3543382 | - | lnc_RNA | retained_intron |
| 106218 | enst00000590064 | sg00000011132 | apba3-205 | 19 | 3750879 | 3756272 | - | lnc_RNA | retained_intron |
| 106605 | enst00000591962 | sg00000267138 | ac005954.1-201 | 19 | 3754620 | 3756659 | - | lnc_RNA | lncrna |
| -108913 | enst00000585788 | sg00000161091 | mfsd12-204 | 19 | 3538275 | 3540043 | - | lnc_RNA | retained_intron |
| -108915 | enst00000615613 | sg00000161091 | mfsd12-215 | 19 | 3539354 | 3540041 | - | mRNA | protein_coding |
| -109802 | enst00000329493 | sg00000183397 | c19orf71-201 | 19 | 3539154 | 3544030 | + | mRNA | protein_coding |
| 110073 | enst00000590238 | sg00000011132 | apba3-206 | 19 | 3753897 | 3760127 | - | lnc_RNA | retained_intron |
| 111516 | enst00000589934 | sg00000011132 | apba3-204 | 19 | 3759612 | 3761570 | - | lnc_RNA | retained_intron |
| 111638 | enst00000316757 | sg00000011132 | apba3-201 | 19 | 3750772 | 3761692 | - | mRNA | protein_coding |
| 112628 | enst00000330133 | sg00000183617 | mrpl54-201 | 19 | 3762682 | 3767565 | + | mRNA | protein_coding |
| 112651 | enst00000589174 | sg00000183617 | mrpl54-202 | 19 | 3762705 | 3768575 | + | mRNA | protein_coding |
| -114671 | enst00000588084 | sg00000105325 | fzr1-205 | 19 | 3534285 | 3535236 | + | lnc_RNA | retained_intron |
| -116473 | enst00000586212 | sg00000105325 | fzr1-204 | 19 | 3532483 | 3533748 | + | lnc_RNA | retained_intron |
| 122157 | enst00000555978 | sg00000173976 | rax2-202 | 19 | 3769089 | 3772211 | - | mRNA | protein_coding |
| 122167 | enst00000555633 | sg00000173976 | rax2-201 | 19 | 3769089 | 3772221 | - | mRNA | protein_coding |
| -122856 | enst00000592214 | sg00000105325 | fzr1-208 | 19 | 3526100 | 3531766 | + | lnc_RNA | retained_intron |
| -125966 | enst00000395095 | sg00000105325 | fzr1-202 | 19 | 3522990 | 3534836 | + | mRNA | protein_coding |
| -125966 | enst00000313639 | sg00000105325 | fzr1-201 | 19 | 3522990 | 3534836 | + | mRNA | protein_coding |
| -125972 | enst00000591290 | sg00000105325 | fzr1-207 | 19 | 3522984 | 3534839 | + | mRNA | nonsense_mediated_decay |
| 126128 | enst00000588332 | sg00000267148 | ac005777.1-201 | 19 | 3775996 | 3776182 | - | pseudogenic_transcript | unprocessed_pseudogene |
| -127636 | enst00000516599 | sg00000252408 | ac005787.1-201 | 19 | 3521248 | 3521320 | - | snoRNA | snorna |
| 133864 | enst00000588983 | sg00000007264 | matk-206 | 19 | 3779389 | 3783918 | - | mRNA | protein_coding |
| 134098 | enst00000590493 | sg00000007264 | matk-208 | 19 | 3779133 | 3784152 | - | mRNA | protein_coding |
| 134519 | enst00000587180 | sg00000007264 | matk-205 | 19 | 3779789 | 3784573 | - | mRNA | protein_coding |
| 135962 | enst00000591059 | sg00000007264 | matk-212 | 19 | 3785097 | 3786016 | - | mRNA | protein_coding |
| 136019 | enst00000590028 | sg00000007264 | matk-207 | 19 | 3783872 | 3786073 | - | mRNA | protein_coding |
| 136228 | enst00000585778 | sg00000007264 | matk-204 | 19 | 3777975 | 3786282 | - | mRNA | protein_coding |
| 136327 | enst00000310132 | sg00000007264 | matk-201 | 19 | 3777973 | 3786381 | - | mRNA | protein_coding |
| 136359 | enst00000395040 | sg00000007264 | matk-202 | 19 | 3777973 | 3786413 | - | mRNA | protein_coding |
| 139293 | enst00000619596 | sg00000007264 | matk-215 | 19 | 3777970 | 3789347 | - | mRNA | protein_coding |
| -142579 | enst00000588327 | sg00000105325 | fzr1-206 | 19 | 3506377 | 3527060 | + | lnc_RNA | retained_intron |
| -142593 | enst00000652521 | sg00000105325 | fzr1-209 | 19 | 3506363 | 3536002 | + | mRNA | protein_coding |
| -142683 | enst00000441788 | sg00000105325 | fzr1-203 | 19 | 3506273 | 3538330 | + | mRNA | protein_coding |
| -148282 | enst00000427575 | sg00000129932 | dohh-201 | 19 | 3490824 | 3500674 | - | mRNA | protein_coding |
| -148319 | enst00000672935 | sg00000129932 | dohh-203 | 19 | 3490821 | 3500637 | - | mRNA | protein_coding |
| 151727 | enst00000592612 | sg00000007264 | matk-214 | 19 | 3793074 | 3801781 | - | lnc_RNA | processed_transcript |
| 151745 | enst00000590849 | sg00000007264 | matk-210 | 19 | 3784021 | 3801799 | - | mRNA | protein_coding |
| 151748 | enst00000590821 | sg00000007264 | matk-209 | 19 | 3787460 | 3801802 | - | lnc_RNA | processed_transcript |
| 151749 | enst00000592300 | sg00000007264 | matk-213 | 19 | 3793130 | 3801803 | - | lnc_RNA | processed_transcript |
| 151758 | enst00000395045 | sg00000007264 | matk-203 | 19 | 3777975 | 3801812 | - | mRNA | protein_coding |
| 152075 | enst00000590980 | sg00000007264 | matk-211 | 19 | 3785247 | 3802129 | - | mRNA | protein_coding |
| -152288 | enst00000671696 | sg00000129932 | dohh-202 | 19 | 3492002 | 3496668 | - | mRNA | protein_coding |
| -154785 | enst00000673168 | sg00000129932 | dohh-204 | 19 | 3491310 | 3494171 | - | lnc_RNA | retained_intron |
| -165510 | enst00000641816 | sg00000284638 | ac005551.1-201 | 19 | 3482804 | 3483446 | - | mRNA | protein_coding |
| -168431 | enst00000215531 | sg00000095932 | smim24-201 | 19 | 3473986 | 3480525 | - | mRNA | protein_coding |
| -168434 | enst00000586804 | sg00000095932 | smim24-202 | 19 | 3478820 | 3480522 | - | lnc_RNA | processed_transcript |
| -169868 | enst00000587847 | sg00000095932 | smim24-203 | 19 | 3474508 | 3479088 | - | mRNA | protein_coding |
| -170468 | enst00000591708 | sg00000095932 | smim24-204 | 19 | 3474407 | 3478488 | - | mRNA | protein_coding |
| -196315 | enst00000589969 | sg00000141905 | nfic-209 | 19 | 3452641 | 3454350 | + | lnc_RNA | retained_intron |
| -196377 | enst00000589164 | sg00000141905 | nfic-207 | 19 | 3452579 | 3457989 | + | lnc_RNA | processed_transcript |
| 205536 | enst00000591712 | sg00000105278 | zfr2-206 | 19 | 3852440 | 3855590 | - | mRNA | protein_coding |
| -213910 | enst00000589537 | sg00000141905 | nfic-208 | 19 | 3435046 | 3463255 | + | lnc_RNA | retained_intron |
| 218961 | enst00000586578 | sg00000105278 | zfr2-204 | 19 | 3851805 | 3869015 | - | mRNA | nonsense_mediated_decay |
| 218969 | enst00000592398 | sg00000105278 | zfr2-208 | 19 | 3852362 | 3869023 | - | mRNA | protein_coding |
| 218974 | enst00000438164 | sg00000105278 | zfr2-202 | 19 | 3821427 | 3869028 | - | mRNA | nonsense_mediated_decay |
| 218975 | enst00000592807 | sg00000105278 | zfr2-209 | 19 | 3833541 | 3869029 | - | lnc_RNA | retained_intron |
| 218975 | enst00000591965 | sg00000105278 | zfr2-207 | 19 | 3831501 | 3869029 | - | lnc_RNA | processed_transcript |
| 218975 | enst00000587212 | sg00000105278 | zfr2-205 | 19 | 3833720 | 3869029 | - | mRNA | nonsense_mediated_decay |
| 218978 | enst00000439086 | sg00000105278 | zfr2-203 | 19 | 3851813 | 3869032 | - | mRNA | protein_coding |
| 218984 | enst00000262961 | sg00000105278 | zfr2-201 | 19 | 3804024 | 3869038 | - | mRNA | protein_coding |
| 220937 | enst00000586853 | sg00000266989 | ftlp5-201 | 19 | 3870991 | 3872107 | + | pseudogenic_transcript | processed_pseudogene |
| 229810 | enst00000598136 | sg00000167654 | atcay-204 | 19 | 3879864 | 3905595 | + | mRNA | protein_coding |
| 230631 | enst00000595916 | sg00000167654 | atcay-202 | 19 | 3880685 | 3893669 | + | lnc_RNA | processed_transcript |
| 230631 | enst00000597739 | sg00000167654 | atcay-203 | 19 | 3880685 | 3924997 | + | mRNA | nonsense_mediated_decay |
| 230631 | enst00000450849 | sg00000167654 | atcay-201 | 19 | 3880685 | 3928082 | + | mRNA | protein_coding |
| 235714 | enst00000600960 | sg00000167654 | atcay-205 | 19 | 3885768 | 3926316 | + | mRNA | protein_coding |
| -238360 | enst00000588839 | sg00000141905 | nfic-205 | 19 | 3410596 | 3425147 | + | lnc_RNA | processed_transcript |
| 270452 | enst00000584410 | sg00000266627 | rn7sl202p-201 | 19 | 3920245 | 3920506 | - | ncRNA | misc_rna |
| 275229 | enst00000601323 | sg00000167654 | atcay-206 | 19 | 3925283 | 3926316 | + | lnc_RNA | processed_transcript |
| -277561 | enst00000623521 | sg00000279599 | ac005514.1-201 | 19 | 3371395 | 3371602 | + | unconfirmed_transcript | tec |
| -282373 | enst00000590282 | sg00000141905 | nfic-210 | 19 | 3366583 | 3462900 | + | mRNA | protein_coding |
| -282373 | enst00000443272 | sg00000141905 | nfic-203 | 19 | 3366583 | 3469217 | + | mRNA | protein_coding |
| -282407 | enst00000341919 | sg00000141905 | nfic-201 | 19 | 3366549 | 3462967 | + | mRNA | protein_coding |
| 283049 | enst00000616156 | sg00000077009 | nmrk2-205 | 19 | 3933103 | 3942414 | + | mRNA | protein_coding |
| 283049 | enst00000168977 | sg00000077009 | nmrk2-201 | 19 | 3933103 | 3942416 | + | mRNA | protein_coding |
| 283062 | enst00000599576 | sg00000077009 | nmrk2-204 | 19 | 3933116 | 3942413 | + | mRNA | protein_coding |
| 283553 | enst00000593949 | sg00000077009 | nmrk2-202 | 19 | 3933607 | 3942369 | + | mRNA | protein_coding |
| 286568 | enst00000597889 | sg00000077009 | nmrk2-203 | 19 | 3936622 | 3942174 | + | mRNA | nonsense_mediated_decay |
| -289273 | enst00000586919 | sg00000141905 | nfic-204 | 19 | 3359683 | 3456600 | + | mRNA | protein_coding |
| -289309 | enst00000395111 | sg00000141905 | nfic-202 | 19 | 3359647 | 3463142 | + | mRNA | protein_coding |
| -289393 | enst00000589123 | sg00000141905 | nfic-206 | 19 | 3359563 | 3469217 | + | mRNA | protein_coding |
| -293001 | enst00000623023 | sg00000280103 | ac007792.1-201 | 19 | 3355554 | 3355955 | - | unconfirmed_transcript | tec |
| 311105 | enst00000594894 | sg00000167657 | dapk3-204 | 19 | 3959639 | 3961159 | - | mRNA | protein_coding |
| 311458 | enst00000385000 | sg00000283928 | mir637-201 | 19 | 3961414 | 3961512 | - | miRNA | mirna |
| 311786 | enst00000595279 | sg00000167657 | dapk3-205 | 19 | 3958458 | 3961840 | - | lnc_RNA | retained_intron |
| 319774 | enst00000301264 | sg00000167657 | dapk3-201 | 19 | 3958454 | 3969828 | - | mRNA | protein_coding |
| 319884 | enst00000593844 | sg00000167657 | dapk3-203 | 19 | 3964631 | 3969938 | - | mRNA | protein_coding |
| 320570 | enst00000601824 | sg00000167657 | dapk3-207 | 19 | 3964323 | 3970624 | - | mRNA | protein_coding |
| 321045 | enst00000545797 | sg00000167657 | dapk3-202 | 19 | 3958453 | 3971099 | - | mRNA | protein_coding |
| 321069 | enst00000596311 | sg00000167657 | dapk3-206 | 19 | 3964322 | 3971123 | - | mRNA | protein_coding |
| 328080 | enst00000600794 | sg00000167658 | eef2-207 | 19 | 3976056 | 3978134 | - | mRNA | protein_coding |
| 329405 | enst00000596417 | sg00000167658 | eef2-203 | 19 | 3978086 | 3979459 | - | lnc_RNA | retained_intron |
| 332259 | enst00000598182 | sg00000167658 | eef2-204 | 19 | 3980687 | 3982313 | - | lnc_RNA | retained_intron |
| 332480 | enst00000598436 | sg00000167658 | eef2-205 | 19 | 3980940 | 3982534 | - | lnc_RNA | retained_intron |
| 332518 | enst00000384048 | sg00000206775 | snord37-201 | 19 | 3982507 | 3982572 | - | snoRNA | snorna |
| -334553 | enst00000641145 | sg00000141905 | nfic-211 | 19 | 3314403 | 3469217 | + | mRNA | protein_coding |
| 335058 | enst00000600720 | sg00000167658 | eef2-206 | 19 | 3983254 | 3985112 | - | lnc_RNA | processed_transcript |
| 335409 | enst00000594885 | sg00000167658 | eef2-202 | 19 | 3983857 | 3985463 | - | lnc_RNA | retained_intron |
| 335409 | enst00000309311 | sg00000167658 | eef2-201 | 19 | 3976056 | 3985463 | - | mRNA | protein_coding |
| -342069 | enst00000592230 | sg00000267448 | ac010649.1-203 | 19 | 3296765 | 3306887 | - | lnc_RNA | lncrna |
| -345986 | enst00000590698 | sg00000267448 | ac010649.1-202 | 19 | 3296765 | 3302970 | - | lnc_RNA | lncrna |
| -346035 | enst00000587592 | sg00000267448 | ac010649.1-201 | 19 | 3296765 | 3302921 | - | lnc_RNA | lncrna |
| 357682 | enst00000262971 | sg00000105229 | pias4-201 | 19 | 4007736 | 4039386 | + | mRNA | protein_coding |
| 357700 | enst00000599999 | sg00000105229 | pias4-204 | 19 | 4007754 | 4028587 | + | lnc_RNA | processed_transcript |
| 357702 | enst00000600566 | sg00000105229 | pias4-205 | 19 | 4007756 | 4028225 | + | lnc_RNA | retained_intron |
| 357704 | enst00000593518 | sg00000105229 | pias4-202 | 19 | 4007758 | 4017800 | + | lnc_RNA | processed_transcript |
| -364194 | enst00000591483 | sg00000161082 | celf5-208 | 19 | 3284762 | 3293401 | + | lnc_RNA | retained_intron |
| -366699 | enst00000588101 | sg00000161082 | celf5-205 | 19 | 3282257 | 3286791 | + | lnc_RNA | processed_transcript |
| 368381 | enst00000596144 | sg00000105229 | pias4-203 | 19 | 4018435 | 4028786 | + | lnc_RNA | processed_transcript |
| -375051 | enst00000588350 | sg00000161082 | celf5-206 | 19 | 3273905 | 3297076 | + | mRNA | nonsense_mediated_decay |
| -378335 | enst00000589370 | sg00000161082 | celf5-207 | 19 | 3270621 | 3282453 | + | lnc_RNA | processed_transcript |
| -378342 | enst00000586050 | sg00000161082 | celf5-204 | 19 | 3270614 | 3290347 | + | lnc_RNA | processed_transcript |
| 378407 | enst00000601439 | sg00000105229 | pias4-206 | 19 | 4028461 | 4028814 | + | lnc_RNA | retained_intron |
| 412695 | enst00000600056 | sg00000268670 | ac016586.1-201 | 19 | 4061615 | 4062749 | - | lnc_RNA | lncrna |
| 415678 | enst00000601588 | sg00000178951 | zbtb7a-202 | 19 | 4047742 | 4065732 | - | mRNA | protein_coding |
| 416845 | enst00000322357 | sg00000178951 | zbtb7a-201 | 19 | 4043303 | 4066899 | - | mRNA | protein_coding |
| -423471 | enst00000334293 | sg00000161082 | celf5-202 | 19 | 3225485 | 3297016 | + | mRNA | nonsense_mediated_decay |
| -424252 | enst00000541430 | sg00000161082 | celf5-203 | 19 | 3224704 | 3296336 | + | mRNA | protein_coding |
| -424295 | enst00000292672 | sg00000161082 | celf5-201 | 19 | 3224661 | 3297076 | + | mRNA | protein_coding |
| -441490 | enst00000591062 | sg00000125912 | ncln-206 | 19 | 3207466 | 3209571 | + | lnc_RNA | processed_transcript |
| -442534 | enst00000592235 | sg00000125912 | ncln-207 | 19 | 3206422 | 3207850 | + | mRNA | protein_coding |
| -444941 | enst00000586904 | sg00000125912 | ncln-202 | 19 | 3204015 | 3207468 | + | mRNA | nonsense_mediated_decay |
| -445159 | enst00000592737 | sg00000125912 | ncln-208 | 19 | 3203797 | 3209575 | + | mRNA | protein_coding |
| 450018 | enst00000595715 | sg00000126934 | map2k2-204 | 19 | 4095388 | 4100072 | - | lnc_RNA | processed_transcript |
| -450115 | enst00000587740 | sg00000125912 | ncln-203 | 19 | 3198841 | 3209575 | + | mRNA | nonsense_mediated_decay |
| 450625 | enst00000600584 | sg00000126934 | map2k2-209 | 19 | 4090324 | 4100679 | - | lnc_RNA | retained_intron |
| 450993 | enst00000599021 | sg00000126934 | map2k2-207 | 19 | 4090597 | 4101047 | - | mRNA | protein_coding |
| 451218 | enst00000597263 | sg00000126934 | map2k2-206 | 19 | 4090434 | 4101272 | - | lnc_RNA | processed_transcript |
| 452450 | enst00000597008 | sg00000126934 | map2k2-205 | 19 | 4100459 | 4102504 | - | lnc_RNA | retained_intron |
| 453150 | enst00000601786 | sg00000126934 | map2k2-210 | 19 | 4090324 | 4103204 | - | lnc_RNA | retained_intron |
| 453159 | enst00000593364 | sg00000126934 | map2k2-203 | 19 | 4099195 | 4103213 | - | lnc_RNA | processed_transcript |
| 454738 | enst00000602167 | sg00000126934 | map2k2-211 | 19 | 4099409 | 4104792 | - | lnc_RNA | processed_transcript |
| -463020 | enst00000588428 | sg00000125912 | ncln-204 | 19 | 3185936 | 3206176 | + | mRNA | protein_coding |
| -463026 | enst00000246117 | sg00000125912 | ncln-201 | 19 | 3185930 | 3209575 | + | mRNA | protein_coding |
| -463393 | enst00000590671 | sg00000125912 | ncln-205 | 19 | 3185563 | 3207856 | + | mRNA | protein_coding |
| -470187 | enst00000246115 | sg00000125910 | s1pr4-201 | 19 | 3178769 | 3180332 | + | mRNA | protein_coding |
| 474018 | enst00000599345 | sg00000126934 | map2k2-208 | 19 | 4101071 | 4124072 | - | lnc_RNA | processed_transcript |
| 474063 | enst00000394867 | sg00000126934 | map2k2-202 | 19 | 4090333 | 4124117 | - | mRNA | protein_coding |
| 474075 | enst00000262948 | sg00000126934 | map2k2-201 | 19 | 4090321 | 4124129 | - | mRNA | protein_coding |
| -476610 | enst00000591346 | sg00000125910 | s1pr4-202 | 19 | 3172346 | 3179527 | + | lnc_RNA | processed_transcript |
| 477438 | enst00000619020 | sg00000278007 | ac016586.2-201 | 19 | 4127492 | 4127732 | + | ncRNA | misc_rna |
| -493781 | enst00000587587 | sg00000267551 | ac005264.1-201 | 19 | 3141576 | 3155175 | - | lnc_RNA | lncrna |
| -499116 | enst00000586082 | sg00000060558 | gna15-202 | 19 | 3149840 | 3155826 | + | lnc_RNA | retained_intron |
Source file: /hps/research1/birney/users/adrien/analyses/cancer_DNA_promethion/run_1_2_3_4/DNA_pipeline_2/results/methylation/pycometh_meth_comp_CGI_3/out.tsv.gz
MD5 hash: 9aa0e3f69cb4e12345c3758eb68a5efc