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CpG interval report generated on 20/05/20 with pycoMeth 0.4.6
Interval details
| pvalue rank | chromosome | start | end | length | number of samples | number of CpGs | pvalue | adjusted pvalue |
|---|---|---|---|---|---|---|---|---|
| #39 | 20 | 46057007 | 46058998 | 1991 | 3 | 63 | 7.42711e-23 | 1.89391e-20 |
Methylation log-likelihood ratio by CpG position
Distribution of CpG methylation log-likelihood ratio by sample
Closest transcripts TSS
| distance to tss | transcript id | gene id | transcript name | chromosome | start | end | strand | feature type | transcript biotype |
|---|---|---|---|---|---|---|---|---|---|
| 0 | enst00000637437 | sg00000124140 | slc12a5-223 | 20 | 46057233 | 46058300 | + | mRNA | protein_coding |
| -1160 | enst00000628413 | sg00000124140 | slc12a5-220 | 20 | 46055847 | 46056510 | + | lnc_RNA | retained_intron |
| -12246 | enst00000626144 | sg00000124140 | slc12a5-214 | 20 | 46044761 | 46045929 | + | lnc_RNA | retained_intron |
| -13814 | enst00000608594 | sg00000124140 | slc12a5-207 | 20 | 46043193 | 46043864 | + | lnc_RNA | retained_intron |
| -20436 | enst00000637863 | sg00000124140 | slc12a5-225 | 20 | 46036571 | 46036770 | + | lnc_RNA | processed_transcript |
| -20859 | enst00000637831 | sg00000124140 | slc12a5-224 | 20 | 46036148 | 46037263 | + | lnc_RNA | processed_transcript |
| -27675 | enst00000636324 | sg00000124140 | slc12a5-222 | 20 | 46029332 | 46034957 | + | lnc_RNA | processed_transcript |
| -27783 | enst00000539566 | sg00000124140 | slc12a5-206 | 20 | 46029224 | 46049653 | + | mRNA | nonsense_mediated_decay |
| -27811 | enst00000372315 | sg00000124140 | slc12a5-202 | 20 | 46029196 | 46041160 | + | lnc_RNA | retained_intron |
| -27823 | enst00000627290 | sg00000124140 | slc12a5-218 | 20 | 46029184 | 46035889 | + | mRNA | nonsense_mediated_decay |
| -27825 | enst00000243964 | sg00000124140 | slc12a5-201 | 20 | 46029182 | 46060152 | + | mRNA | protein_coding |
| -27825 | enst00000626937 | sg00000124140 | slc12a5-217 | 20 | 46029182 | 46060150 | + | mRNA | protein_coding |
| -27825 | enst00000616202 | sg00000124140 | slc12a5-210 | 20 | 46029182 | 46060150 | + | mRNA | protein_coding |
| -27825 | enst00000616201 | sg00000124140 | slc12a5-209 | 20 | 46029182 | 46060150 | + | mRNA | protein_coding |
| -27825 | enst00000625683 | sg00000124140 | slc12a5-213 | 20 | 46029182 | 46041183 | + | lnc_RNA | retained_intron |
| -27825 | enst00000622711 | sg00000124140 | slc12a5-212 | 20 | 46029182 | 46041183 | + | lnc_RNA | retained_intron |
| -27825 | enst00000629054 | sg00000124140 | slc12a5-221 | 20 | 46029182 | 46041183 | + | lnc_RNA | retained_intron |
| -27825 | enst00000616933 | sg00000124140 | slc12a5-211 | 20 | 46029182 | 46060150 | + | mRNA | protein_coding |
| -27998 | enst00000608944 | sg00000124140 | slc12a5-208 | 20 | 46029009 | 46037275 | + | mRNA | protein_coding |
| 30954 | enst00000372291 | sg00000124160 | ncoa5-202 | 20 | 46067055 | 46089952 | - | mRNA | protein_coding |
| 30964 | enst00000290231 | sg00000124160 | ncoa5-201 | 20 | 46060991 | 46089962 | - | mRNA | protein_coding |
| -34298 | enst00000626695 | sg00000124140 | slc12a5-215 | 20 | 46022709 | 46023396 | + | lnc_RNA | retained_intron |
| -34934 | enst00000535913 | sg00000204044 | slc12a5-as1-202 | 20 | 46013500 | 46022073 | - | lnc_RNA | lncrna |
| -35168 | enst00000413737 | sg00000124140 | slc12a5-203 | 20 | 46021839 | 46023589 | + | mRNA | protein_coding |
| -35231 | enst00000428198 | sg00000124140 | slc12a5-204 | 20 | 46021776 | 46027799 | + | lnc_RNA | processed_transcript |
| -35280 | enst00000419897 | sg00000204044 | slc12a5-as1-201 | 20 | 46020619 | 46021727 | - | lnc_RNA | lncrna |
| -35295 | enst00000626701 | sg00000124140 | slc12a5-216 | 20 | 46021712 | 46023581 | + | mRNA | protein_coding |
| -35308 | enst00000628272 | sg00000124140 | slc12a5-219 | 20 | 46021699 | 46023581 | + | mRNA | protein_coding |
| -35317 | enst00000454036 | sg00000124140 | slc12a5-205 | 20 | 46021690 | 46057702 | + | mRNA | protein_coding |
| 40520 | enst00000440687 | sg00000213820 | rpl13p2-201 | 20 | 46099518 | 46100176 | + | pseudogenic_transcript | processed_pseudogene |
| -48099 | enst00000372330 | sg00000100985 | mmp9-201 | 20 | 46008908 | 46016561 | + | mRNA | protein_coding |
| 59280 | enst00000620709 | sg00000101017 | cd40-207 | 20 | 46118278 | 46129659 | + | mRNA | protein_coding |
| 59316 | enst00000372285 | sg00000101017 | cd40-202 | 20 | 46118314 | 46129858 | + | mRNA | protein_coding |
| 59318 | enst00000372276 | sg00000101017 | cd40-201 | 20 | 46118316 | 46129863 | + | mRNA | protein_coding |
| 59350 | enst00000466205 | sg00000101017 | cd40-204 | 20 | 46118348 | 46129126 | + | mRNA | nonsense_mediated_decay |
| 59353 | enst00000489304 | sg00000101017 | cd40-206 | 20 | 46118351 | 46129863 | + | lnc_RNA | processed_transcript |
| 59375 | enst00000477696 | sg00000101017 | cd40-205 | 20 | 46118373 | 46129004 | + | lnc_RNA | processed_transcript |
| 63320 | enst00000461171 | sg00000101017 | cd40-203 | 20 | 46122318 | 46127161 | + | lnc_RNA | processed_transcript |
| -80932 | enst00000449155 | sg00000235525 | ftlp1-201 | 20 | 45975249 | 45976075 | - | pseudogenic_transcript | processed_pseudogene |
| -84804 | enst00000322927 | sg00000198026 | znf335-201 | 20 | 45948660 | 45972203 | - | mRNA | protein_coding |
| -86782 | enst00000476822 | sg00000198026 | znf335-203 | 20 | 45965693 | 45970225 | - | lnc_RNA | processed_transcript |
| -88149 | enst00000494955 | sg00000198026 | znf335-204 | 20 | 45966867 | 45968858 | - | lnc_RNA | processed_transcript |
| -92491 | enst00000475002 | sg00000198026 | znf335-202 | 20 | 45961506 | 45964516 | - | lnc_RNA | processed_transcript |
| -112000 | enst00000479348 | sg00000100982 | pcif1-202 | 20 | 45945007 | 45948023 | + | mRNA | protein_coding |
| 112239 | enst00000450586 | sg00000229957 | al031687.1-201 | 20 | 46168404 | 46171237 | - | lnc_RNA | lncrna |
| -121952 | enst00000647856 | sg00000285796 | al162458.1-201 | 20 | 45926518 | 45935055 | - | lnc_RNA | lncrna |
| -122274 | enst00000616084 | sg00000100982 | pcif1-203 | 20 | 45934733 | 45937972 | + | lnc_RNA | processed_transcript |
| -122324 | enst00000372409 | sg00000100982 | pcif1-201 | 20 | 45934683 | 45948020 | + | mRNA | protein_coding |
| -144852 | enst00000372431 | sg00000100979 | pltp-203 | 20 | 45898622 | 45912155 | - | mRNA | protein_coding |
| -144852 | enst00000420868 | sg00000100979 | pltp-204 | 20 | 45898806 | 45912155 | - | mRNA | protein_coding |
| -144855 | enst00000354050 | sg00000100979 | pltp-201 | 20 | 45898621 | 45912152 | - | mRNA | protein_coding |
| -144960 | enst00000477313 | sg00000100979 | pltp-205 | 20 | 45898763 | 45912047 | - | mRNA | protein_coding |
| -146070 | enst00000372420 | sg00000100979 | pltp-202 | 20 | 45898760 | 45910937 | - | mRNA | protein_coding |
| -159381 | enst00000606000 | sg00000064601 | ctsa-210 | 20 | 45897626 | 45898627 | + | lnc_RNA | retained_intron |
| -160408 | enst00000607187 | sg00000064601 | ctsa-215 | 20 | 45896599 | 45897783 | + | lnc_RNA | retained_intron |
| -160626 | enst00000484855 | sg00000064601 | ctsa-207 | 20 | 45896381 | 45898820 | + | lnc_RNA | retained_intron |
| 161851 | enst00000474438 | sg00000149654 | cdh22-201 | 20 | 46209821 | 46220849 | - | lnc_RNA | processed_transcript |
| -163019 | enst00000480961 | sg00000064601 | ctsa-206 | 20 | 45893988 | 45895250 | + | lnc_RNA | retained_intron |
| -163588 | enst00000607703 | sg00000271984 | al008726.1-201 | 20 | 45892694 | 45893419 | - | lnc_RNA | lncrna |
| -164046 | enst00000493522 | sg00000064601 | ctsa-209 | 20 | 45892961 | 45897794 | + | lnc_RNA | retained_intron |
| -164255 | enst00000419493 | sg00000064601 | ctsa-205 | 20 | 45892752 | 45895132 | + | mRNA | protein_coding |
| -164599 | enst00000606782 | sg00000064601 | ctsa-213 | 20 | 45892408 | 45893229 | + | lnc_RNA | retained_intron |
| -164701 | enst00000485627 | sg00000064601 | ctsa-208 | 20 | 45892306 | 45894329 | + | lnc_RNA | retained_intron |
| -165631 | enst00000372459 | sg00000064601 | ctsa-203 | 20 | 45891376 | 45898786 | + | mRNA | protein_coding |
| -165631 | enst00000607482 | sg00000064601 | ctsa-217 | 20 | 45891376 | 45892295 | + | mRNA | protein_coding |
| -165650 | enst00000607212 | sg00000064601 | ctsa-216 | 20 | 45891357 | 45892454 | + | lnc_RNA | retained_intron |
| -165652 | enst00000607814 | sg00000064601 | ctsa-218 | 20 | 45891355 | 45892372 | + | lnc_RNA | retained_intron |
| -165666 | enst00000191018 | sg00000064601 | ctsa-201 | 20 | 45891341 | 45898820 | + | mRNA | protein_coding |
| -165672 | enst00000646241 | sg00000064601 | ctsa-220 | 20 | 45891335 | 45898820 | + | mRNA | protein_coding |
| -165672 | enst00000606066 | sg00000064601 | ctsa-211 | 20 | 45891335 | 45892764 | + | lnc_RNA | retained_intron |
| -165672 | enst00000607841 | sg00000064601 | ctsa-219 | 20 | 45891335 | 45892247 | + | lnc_RNA | retained_intron |
| -165685 | enst00000354880 | sg00000064601 | ctsa-202 | 20 | 45891322 | 45898820 | + | mRNA | protein_coding |
| -165694 | enst00000606394 | sg00000064601 | ctsa-212 | 20 | 45891313 | 45893299 | + | mRNA | nonsense_mediated_decay |
| -165720 | enst00000372518 | sg00000124257 | neurl2-201 | 20 | 45888634 | 45891287 | - | mRNA | protein_coding |
| -165963 | enst00000372484 | sg00000064601 | ctsa-204 | 20 | 45891044 | 45898820 | + | mRNA | protein_coding |
| -166531 | enst00000545238 | sg00000124257 | neurl2-202 | 20 | 45888625 | 45890476 | - | mRNA | protein_coding |
| -166863 | enst00000606788 | sg00000064601 | ctsa-214 | 20 | 45890144 | 45898820 | + | mRNA | nonsense_mediated_decay |
| -169372 | enst00000372519 | sg00000149634 | spata25-201 | 20 | 45886489 | 45887635 | - | mRNA | protein_coding |
| -175766 | enst00000372520 | sg00000168612 | zswim1-201 | 20 | 45881241 | 45885265 | + | mRNA | protein_coding |
| -175780 | enst00000372523 | sg00000168612 | zswim1-202 | 20 | 45881227 | 45885266 | + | mRNA | protein_coding |
| -199393 | enst00000255152 | sg00000132801 | zswim3-201 | 20 | 45857614 | 45879122 | + | mRNA | protein_coding |
| -199602 | enst00000481938 | sg00000101473 | acot8-205 | 20 | 45848533 | 45857405 | - | mRNA | nonsense_mediated_decay |
| -199605 | enst00000488679 | sg00000101473 | acot8-211 | 20 | 45841738 | 45857402 | - | mRNA | nonsense_mediated_decay |
| -199610 | enst00000484783 | sg00000101473 | acot8-207 | 20 | 45843723 | 45857397 | - | lnc_RNA | retained_intron |
| -199615 | enst00000217455 | sg00000101473 | acot8-201 | 20 | 45841721 | 45857392 | - | mRNA | protein_coding |
| -199618 | enst00000461272 | sg00000101473 | acot8-204 | 20 | 45841726 | 45857389 | - | mRNA | nonsense_mediated_decay |
| -199636 | enst00000493118 | sg00000101473 | acot8-212 | 20 | 45842023 | 45857371 | - | lnc_RNA | retained_intron |
| -199636 | enst00000486165 | sg00000101473 | acot8-209 | 20 | 45844263 | 45857371 | - | mRNA | nonsense_mediated_decay |
| -199638 | enst00000483141 | sg00000101473 | acot8-206 | 20 | 45842747 | 45857369 | - | mRNA | nonsense_mediated_decay |
| -199698 | enst00000426915 | sg00000101473 | acot8-202 | 20 | 45853422 | 45857309 | - | mRNA | protein_coding |
| -199811 | enst00000457981 | sg00000101473 | acot8-203 | 20 | 45853420 | 45857196 | - | mRNA | protein_coding |
| -200083 | enst00000652771 | sg00000101473 | acot8-213 | 20 | 45841730 | 45856924 | - | mRNA | protein_coding |
| -201723 | enst00000487205 | sg00000101473 | acot8-210 | 20 | 45841765 | 45855284 | - | mRNA | protein_coding |
| -207897 | enst00000484975 | sg00000101473 | acot8-208 | 20 | 45842023 | 45849110 | - | lnc_RNA | retained_intron |
| -209067 | enst00000617007 | sg00000277051 | al008726.2-201 | 20 | 45847630 | 45847940 | - | ncRNA | misc_rna |
| -221974 | enst00000465997 | sg00000124104 | snx21-207 | 20 | 45835033 | 45841090 | + | lnc_RNA | processed_transcript |
| -222258 | enst00000486336 | sg00000124104 | snx21-211 | 20 | 45834749 | 45840971 | + | lnc_RNA | retained_intron |
| -222430 | enst00000372547 | sg00000124104 | snx21-205 | 20 | 45834577 | 45842881 | + | lnc_RNA | retained_intron |
| -222650 | enst00000478230 | sg00000124104 | snx21-210 | 20 | 45834357 | 45841171 | + | lnc_RNA | processed_transcript |
| -222856 | enst00000344780 | sg00000124104 | snx21-202 | 20 | 45834151 | 45843275 | + | lnc_RNA | processed_transcript |
| -222871 | enst00000372541 | sg00000124104 | snx21-203 | 20 | 45834136 | 45840907 | + | mRNA | protein_coding |
| -223112 | enst00000372542 | sg00000124104 | snx21-204 | 20 | 45833895 | 45841730 | + | mRNA | protein_coding |
| -223155 | enst00000342644 | sg00000124104 | snx21-201 | 20 | 45833852 | 45842881 | + | mRNA | protein_coding |
| -223176 | enst00000472219 | sg00000124104 | snx21-209 | 20 | 45833831 | 45841730 | + | lnc_RNA | processed_transcript |
| -223176 | enst00000462307 | sg00000124104 | snx21-206 | 20 | 45833831 | 45841134 | + | mRNA | protein_coding |
| -223176 | enst00000614929 | sg00000124104 | snx21-213 | 20 | 45833831 | 45838318 | + | mRNA | protein_coding |
| -223197 | enst00000466252 | sg00000124104 | snx21-208 | 20 | 45833810 | 45835055 | + | lnc_RNA | processed_transcript |
| -223208 | enst00000491381 | sg00000124104 | snx21-212 | 20 | 45833799 | 45843276 | + | mRNA | protein_coding |
| -223262 | enst00000372557 | sg00000101470 | tnnc2-202 | 20 | 45823214 | 45833745 | - | mRNA | protein_coding |
| -229695 | enst00000372555 | sg00000101470 | tnnc2-201 | 20 | 45823214 | 45827312 | - | mRNA | protein_coding |
| -242597 | enst00000496085 | sg00000175063 | ube2c-207 | 20 | 45814410 | 45816802 | + | lnc_RNA | processed_transcript |
| -244001 | enst00000372568 | sg00000175063 | ube2c-205 | 20 | 45813006 | 45816957 | + | mRNA | protein_coding |
| -244333 | enst00000352551 | sg00000175063 | ube2c-203 | 20 | 45812674 | 45816957 | + | mRNA | protein_coding |
| -244349 | enst00000243893 | sg00000175063 | ube2c-201 | 20 | 45812658 | 45816957 | + | mRNA | protein_coding |
| -244363 | enst00000356455 | sg00000175063 | ube2c-204 | 20 | 45812644 | 45816952 | + | mRNA | protein_coding |
| -244372 | enst00000335046 | sg00000175063 | ube2c-202 | 20 | 45812635 | 45816957 | + | mRNA | protein_coding |
| -244431 | enst00000617055 | sg00000175063 | ube2c-208 | 20 | 45812576 | 45816953 | + | mRNA | protein_coding |
| -244431 | enst00000405520 | sg00000175063 | ube2c-206 | 20 | 45812576 | 45816953 | + | mRNA | protein_coding |
| 249500 | enst00000537909 | sg00000149654 | cdh22-202 | 20 | 46173739 | 46308498 | - | mRNA | protein_coding |
| -254010 | enst00000467701 | sg00000101457 | dnttip1-206 | 20 | 45802997 | 45805366 | + | lnc_RNA | retained_intron |
| -263042 | enst00000435014 | sg00000101457 | dnttip1-203 | 20 | 45793965 | 45811427 | + | mRNA | protein_coding |
| -264471 | enst00000415790 | sg00000101457 | dnttip1-202 | 20 | 45792536 | 45802055 | + | mRNA | protein_coding |
| -264952 | enst00000456939 | sg00000101457 | dnttip1-205 | 20 | 45792055 | 45811427 | + | mRNA | protein_coding |
| -264987 | enst00000449078 | sg00000101457 | dnttip1-204 | 20 | 45792020 | 45796573 | + | mRNA | protein_coding |
| -265053 | enst00000372622 | sg00000101457 | dnttip1-201 | 20 | 45791954 | 45811418 | + | mRNA | protein_coding |
| -265075 | enst00000481847 | sg00000124116 | wfdc3-210 | 20 | 45747944 | 45791932 | - | lnc_RNA | processed_transcript |
| -265092 | enst00000467679 | sg00000124116 | wfdc3-207 | 20 | 45775417 | 45791915 | - | lnc_RNA | processed_transcript |
| -265104 | enst00000487343 | sg00000124116 | wfdc3-211 | 20 | 45774305 | 45791903 | - | lnc_RNA | processed_transcript |
| -265104 | enst00000462017 | sg00000124116 | wfdc3-205 | 20 | 45774305 | 45791903 | - | lnc_RNA | processed_transcript |
| -265107 | enst00000493693 | sg00000124116 | wfdc3-213 | 20 | 45774213 | 45791900 | - | lnc_RNA | processed_transcript |
| -265124 | enst00000243938 | sg00000124116 | wfdc3-201 | 20 | 45774213 | 45791883 | - | mRNA | protein_coding |
| -265126 | enst00000471401 | sg00000124116 | wfdc3-208 | 20 | 45774213 | 45791881 | - | lnc_RNA | processed_transcript |
| -265132 | enst00000490877 | sg00000124116 | wfdc3-212 | 20 | 45775511 | 45791875 | - | lnc_RNA | processed_transcript |
| -265139 | enst00000465935 | sg00000124116 | wfdc3-206 | 20 | 45788211 | 45791868 | - | lnc_RNA | retained_intron |
| -266067 | enst00000337205 | sg00000124116 | wfdc3-202 | 20 | 45774208 | 45790940 | - | mRNA | protein_coding |
| -266935 | enst00000372630 | sg00000124116 | wfdc3-203 | 20 | 45774213 | 45790072 | - | mRNA | protein_coding |
| -266957 | enst00000372632 | sg00000124116 | wfdc3-204 | 20 | 45774213 | 45790050 | - | mRNA | protein_coding |
| -277114 | enst00000474942 | sg00000124116 | wfdc3-209 | 20 | 45774213 | 45779893 | - | lnc_RNA | processed_transcript |
| -278309 | enst00000408119 | sg00000221046 | rnu6atac38p-201 | 20 | 45778698 | 45778823 | + | snRNA | snrna |
| 294199 | enst00000493599 | sg00000080189 | slc35c2-212 | 20 | 46349528 | 46353197 | - | lnc_RNA | processed_transcript |
| 296197 | enst00000480329 | sg00000080189 | slc35c2-207 | 20 | 46350355 | 46355195 | - | lnc_RNA | processed_transcript |
| 298703 | enst00000487729 | sg00000080189 | slc35c2-211 | 20 | 46350771 | 46357701 | - | lnc_RNA | processed_transcript |
| 299508 | enst00000420518 | sg00000080189 | slc35c2-205 | 20 | 46352164 | 46358506 | - | mRNA | protein_coding |
| 299766 | enst00000424568 | sg00000080189 | slc35c2-206 | 20 | 46355104 | 46358764 | - | mRNA | protein_coding |
| 304176 | enst00000372227 | sg00000080189 | slc35c2-203 | 20 | 46349528 | 46363174 | - | mRNA | protein_coding |
| 305363 | enst00000484188 | sg00000080189 | slc35c2-209 | 20 | 46358427 | 46364361 | - | lnc_RNA | processed_transcript |
| 305383 | enst00000481809 | sg00000080189 | slc35c2-208 | 20 | 46352150 | 46364381 | - | lnc_RNA | processed_transcript |
| 305392 | enst00000484318 | sg00000080189 | slc35c2-210 | 20 | 46352123 | 46364390 | - | lnc_RNA | processed_transcript |
| 305403 | enst00000243896 | sg00000080189 | slc35c2-201 | 20 | 46349528 | 46364401 | - | mRNA | protein_coding |
| 305406 | enst00000543605 | sg00000080189 | slc35c2-213 | 20 | 46345980 | 46364404 | - | mRNA | protein_coding |
| 305427 | enst00000372230 | sg00000080189 | slc35c2-204 | 20 | 46345984 | 46364425 | - | mRNA | protein_coding |
| 305460 | enst00000317734 | sg00000080189 | slc35c2-202 | 20 | 46349530 | 46364458 | - | mRNA | protein_coding |
| 305553 | enst00000612368 | sg00000273828 | al133227.1-201 | 20 | 46364551 | 46390885 | + | lnc_RNA | lncrna |
| 305572 | enst00000651935 | sg00000273828 | al133227.1-202 | 20 | 46364570 | 46397994 | + | lnc_RNA | lncrna |
| -307087 | enst00000448174 | sg00000168630 | spint5p-201 | 20 | 45749920 | 45750074 | + | pseudogenic_transcript | processed_pseudogene |
| -310720 | enst00000440968 | sg00000226188 | hnrnpa1p3-201 | 20 | 45745737 | 45746287 | - | pseudogenic_transcript | processed_pseudogene |
| 314497 | enst00000464448 | sg00000062598 | elmo2-211 | 20 | 46370443 | 46373495 | - | lnc_RNA | processed_transcript |
| 314517 | enst00000452857 | sg00000062598 | elmo2-207 | 20 | 46366054 | 46373515 | - | mRNA | protein_coding |
| 316773 | enst00000467800 | sg00000062598 | elmo2-212 | 20 | 46366050 | 46375771 | - | mRNA | nonsense_mediated_decay |
| 317969 | enst00000481852 | sg00000062598 | elmo2-215 | 20 | 46374351 | 46376967 | - | lnc_RNA | processed_transcript |
| 327166 | enst00000425546 | sg00000062598 | elmo2-205 | 20 | 46372835 | 46386164 | - | mRNA | protein_coding |
| 327166 | enst00000462491 | sg00000062598 | elmo2-209 | 20 | 46373241 | 46386164 | - | lnc_RNA | processed_transcript |
| 327167 | enst00000480042 | sg00000062598 | elmo2-214 | 20 | 46379919 | 46386165 | - | lnc_RNA | processed_transcript |
| -334660 | enst00000279058 | sg00000149651 | spint4-201 | 20 | 45722347 | 45725830 | + | mRNA | protein_coding |
| 335439 | enst00000462593 | sg00000062598 | elmo2-210 | 20 | 46387505 | 46394437 | - | lnc_RNA | processed_transcript |
| 335484 | enst00000352077 | sg00000062598 | elmo2-202 | 20 | 46367360 | 46394482 | - | mRNA | protein_coding |
| 347561 | enst00000372176 | sg00000062598 | elmo2-203 | 20 | 46366050 | 46406559 | - | mRNA | protein_coding |
| 347601 | enst00000488853 | sg00000062598 | elmo2-217 | 20 | 46374438 | 46406599 | - | lnc_RNA | processed_transcript |
| 347606 | enst00000450812 | sg00000062598 | elmo2-206 | 20 | 46375286 | 46406604 | - | mRNA | protein_coding |
| 347617 | enst00000290246 | sg00000062598 | elmo2-201 | 20 | 46366050 | 46406615 | - | mRNA | protein_coding |
| 347617 | enst00000469801 | sg00000062598 | elmo2-213 | 20 | 46383416 | 46406615 | - | lnc_RNA | processed_transcript |
| 347617 | enst00000460474 | sg00000062598 | elmo2-208 | 20 | 46383468 | 46406615 | - | lnc_RNA | processed_transcript |
| 347626 | enst00000497412 | sg00000062598 | elmo2-218 | 20 | 46386124 | 46406624 | - | lnc_RNA | processed_transcript |
| 347634 | enst00000396391 | sg00000062598 | elmo2-204 | 20 | 46366055 | 46406632 | - | mRNA | protein_coding |
| -351827 | enst00000577518 | sg00000266071 | mir3617-201 | 20 | 45705102 | 45705180 | - | miRNA | mirna |
| -351988 | enst00000335769 | sg00000182931 | wfdc10b-202 | 20 | 45684653 | 45705019 | - | mRNA | protein_coding |
| -351988 | enst00000330523 | sg00000182931 | wfdc10b-201 | 20 | 45684653 | 45705019 | - | mRNA | protein_coding |
| -354969 | enst00000305479 | sg00000168634 | wfdc13-201 | 20 | 45702038 | 45708817 | + | mRNA | protein_coding |
| 373987 | enst00000487583 | sg00000062598 | elmo2-216 | 20 | 46387427 | 46432985 | - | lnc_RNA | processed_transcript |
| -386737 | enst00000356562 | sg00000180083 | wfdc11-202 | 20 | 45648563 | 45670270 | - | mRNA | protein_coding |
| -386768 | enst00000324384 | sg00000180083 | wfdc11-201 | 20 | 45648563 | 45670239 | - | mRNA | protein_coding |
| -389830 | enst00000618797 | sg00000180083 | wfdc11-203 | 20 | 45648563 | 45667177 | - | mRNA | protein_coding |
| 398087 | enst00000641770 | sg00000215452 | znf663p-202 | 20 | 46455955 | 46457085 | - | pseudogenic_transcript | transcribed_unitary_pseudogene |
| 400278 | enst00000400371 | sg00000215452 | znf663p-201 | 20 | 46414228 | 46459276 | - | lnc_RNA | processed_transcript |
| 406272 | enst00000433469 | sg00000225849 | mkrn7p-201 | 20 | 46463900 | 46465270 | - | pseudogenic_transcript | transcribed_processed_pseudogene |
| -415637 | enst00000447334 | sg00000235508 | rps2p7-201 | 20 | 45640486 | 45641370 | - | pseudogenic_transcript | processed_pseudogene |
| 418234 | enst00000640520 | sg00000225849 | mkrn7p-202 | 20 | 46463719 | 46477232 | - | lnc_RNA | processed_transcript |
| 422359 | enst00000472805 | sg00000283757 | al031686.1-201 | 20 | 46455033 | 46481357 | - | lnc_RNA | lncrna |
| 425463 | enst00000504759 | sg00000184617 | znf840p-201 | 20 | 46484461 | 46492640 | + | pseudogenic_transcript | unprocessed_pseudogene |
| -425723 | enst00000326000 | sg00000180205 | wfdc9-201 | 20 | 45607939 | 45631284 | - | mRNA | protein_coding |
| -427268 | enst00000372643 | sg00000180305 | wfdc10a-201 | 20 | 45629739 | 45631196 | + | mRNA | protein_coding |
| 437733 | enst00000639819 | sg00000283757 | al031686.1-202 | 20 | 46456599 | 46496731 | - | lnc_RNA | lncrna |
| 447372 | enst00000596323 | sg00000198185 | znf334-204 | 20 | 46502705 | 46506370 | - | mRNA | protein_coding |
| 447640 | enst00000593880 | sg00000198185 | znf334-203 | 20 | 46501068 | 46506638 | - | mRNA | protein_coding |
| 450624 | enst00000615481 | sg00000198185 | znf334-205 | 20 | 46499630 | 46509622 | - | mRNA | protein_coding |
| 454556 | enst00000347606 | sg00000198185 | znf334-201 | 20 | 46499632 | 46513554 | - | mRNA | protein_coding |
| 454557 | enst00000625284 | sg00000198185 | znf334-206 | 20 | 46501088 | 46513555 | - | mRNA | protein_coding |
| 454561 | enst00000457685 | sg00000198185 | znf334-202 | 20 | 46501062 | 46513559 | - | mRNA | protein_coding |
| -477681 | enst00000357199 | sg00000158901 | wfdc8-202 | 20 | 45551153 | 45579326 | - | mRNA | protein_coding |
| -477681 | enst00000289953 | sg00000158901 | wfdc8-201 | 20 | 45551762 | 45579326 | - | mRNA | protein_coding |
| -488200 | enst00000432876 | sg00000230860 | ccnb1ip1p2-201 | 20 | 45567990 | 45568807 | - | pseudogenic_transcript | processed_pseudogene |
| 491656 | enst00000279028 | sg00000149635 | ocstamp-201 | 20 | 46540946 | 46550654 | - | mRNA | protein_coding |
| -497131 | enst00000365053 | sg00000201923 | rna5sp485-201 | 20 | 45559758 | 45559876 | - | pseudogenic_transcript | rrna_pseudogene |
Source file: /hps/research1/birney/users/adrien/analyses/cancer_DNA_promethion/run_1_2_3_4/DNA_pipeline_2/results/methylation/pycometh_meth_comp_CGI_3/out.tsv.gz
MD5 hash: 9aa0e3f69cb4e12345c3758eb68a5efc