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CpG interval report generated on 20/05/20 with pycoMeth 0.4.6
Interval details
| pvalue rank | chromosome | start | end | length | number of samples | number of CpGs | pvalue | adjusted pvalue |
|---|---|---|---|---|---|---|---|---|
| #38 | 22 | 19765660 | 19767542 | 1882 | 3 | 54 | 5.43817e-23 | 1.42323e-20 |
Methylation log-likelihood ratio by CpG position
Distribution of CpG methylation log-likelihood ratio by sample
Closest transcripts TSS
| distance to tss | transcript id | gene id | transcript name | chromosome | start | end | strand | feature type | transcript biotype |
|---|---|---|---|---|---|---|---|---|---|
| -581 | enst00000484336 | sg00000184058 | tbx1-205 | 22 | 19765079 | 19766327 | + | lnc_RNA | retained_intron |
| -4463 | enst00000475303 | sg00000184058 | tbx1-204 | 22 | 19761197 | 19763702 | + | lnc_RNA | retained_intron |
| -4839 | enst00000649276 | sg00000184058 | tbx1-206 | 22 | 19760821 | 19767332 | + | mRNA | protein_coding |
| -8957 | enst00000359500 | sg00000184058 | tbx1-203 | 22 | 19756703 | 19783593 | + | mRNA | protein_coding |
| -8957 | enst00000329705 | sg00000184058 | tbx1-201 | 22 | 19756703 | 19779546 | + | mRNA | protein_coding |
| -8957 | enst00000332710 | sg00000184058 | tbx1-202 | 22 | 19756703 | 19767334 | + | mRNA | protein_coding |
| 24752 | enst00000424559 | sg00000235776 | ac000089.1-201 | 22 | 19792294 | 19793094 | + | pseudogenic_transcript | processed_pseudogene |
| -42121 | enst00000366425 | sg00000203618 | gp1bb-201 | 22 | 19723539 | 19724771 | + | mRNA | protein_coding |
| -45106 | enst00000470814 | sg00000184702 | septin5-210 | 22 | 19720554 | 19724224 | + | lnc_RNA | retained_intron |
| -45318 | enst00000480423 | sg00000184702 | septin5-212 | 22 | 19720342 | 19721869 | + | lnc_RNA | retained_intron |
| -45472 | enst00000413258 | sg00000184702 | septin5-206 | 22 | 19720188 | 19720874 | + | mRNA | protein_coding |
| -46130 | enst00000477238 | sg00000184702 | septin5-211 | 22 | 19719530 | 19720213 | + | lnc_RNA | retained_intron |
| -46225 | enst00000395109 | sg00000184702 | septin5-202 | 22 | 19719435 | 19720833 | + | mRNA | protein_coding |
| -47191 | enst00000431044 | sg00000284874 | ac000093.1-202 | 22 | 19718469 | 19724772 | + | mRNA | nonsense_mediated_decay |
| -47202 | enst00000438754 | sg00000184702 | septin5-208 | 22 | 19718458 | 19723319 | + | mRNA | protein_coding |
| -47228 | enst00000383045 | sg00000184702 | septin5-201 | 22 | 19718432 | 19722629 | + | mRNA | protein_coding |
| -47501 | enst00000490204 | sg00000184702 | septin5-213 | 22 | 19718159 | 19719055 | + | lnc_RNA | processed_transcript |
| -48390 | enst00000431124 | sg00000184702 | septin5-207 | 22 | 19717270 | 19721720 | + | mRNA | protein_coding |
| -48440 | enst00000455843 | sg00000284874 | ac000093.1-201 | 22 | 19717220 | 19724216 | + | mRNA | nonsense_mediated_decay |
| -50985 | enst00000412544 | sg00000184702 | septin5-205 | 22 | 19714675 | 19722331 | + | mRNA | protein_coding |
| -51131 | enst00000406172 | sg00000184702 | septin5-203 | 22 | 19714529 | 19723319 | + | mRNA | nonsense_mediated_decay |
| -51156 | enst00000406395 | sg00000184702 | septin5-204 | 22 | 19714504 | 19723274 | + | mRNA | protein_coding |
| -51157 | enst00000455784 | sg00000184702 | septin5-209 | 22 | 19714503 | 19723319 | + | mRNA | protein_coding |
| 87264 | enst00000460402 | sg00000185838 | gnb1l-205 | 22 | 19788464 | 19854806 | - | lnc_RNA | processed_transcript |
| 87274 | enst00000481086 | sg00000185838 | gnb1l-206 | 22 | 19801999 | 19854816 | - | lnc_RNA | processed_transcript |
| 87274 | enst00000416337 | sg00000215012 | rtl10-204 | 22 | 19851989 | 19854816 | - | mRNA | protein_coding |
| 87301 | enst00000403325 | sg00000185838 | gnb1l-202 | 22 | 19788415 | 19854843 | - | mRNA | protein_coding |
| 87301 | enst00000453108 | sg00000185838 | gnb1l-204 | 22 | 19812295 | 19854843 | - | mRNA | protein_coding |
| 87321 | enst00000484072 | sg00000215012 | rtl10-205 | 22 | 19846146 | 19854863 | - | lnc_RNA | processed_transcript |
| 87332 | enst00000328554 | sg00000215012 | rtl10-201 | 22 | 19846146 | 19854874 | - | mRNA | protein_coding |
| 87332 | enst00000329517 | sg00000185838 | gnb1l-201 | 22 | 19783223 | 19854874 | - | mRNA | protein_coding |
| 87344 | enst00000405640 | sg00000215012 | rtl10-202 | 22 | 19846146 | 19854886 | - | mRNA | protein_coding |
| 87354 | enst00000407472 | sg00000215012 | rtl10-203 | 22 | 19846138 | 19854896 | - | mRNA | protein_coding |
| 87397 | enst00000405009 | sg00000185838 | gnb1l-203 | 22 | 19788418 | 19854939 | - | mRNA | protein_coding |
| -98637 | enst00000452326 | sg00000225007 | ac000067.1-201 | 22 | 19667023 | 19667555 | + | lnc_RNA | lncrna |
| 113612 | enst00000462843 | sg00000184470 | txnrd2-207 | 22 | 19875692 | 19881154 | - | mRNA | non_stop_decay |
| 113622 | enst00000485358 | sg00000184470 | txnrd2-212 | 22 | 19875641 | 19881164 | - | mRNA | protein_coding |
| 113805 | enst00000495655 | sg00000184470 | txnrd2-216 | 22 | 19875524 | 19881347 | - | lnc_RNA | retained_intron |
| 113827 | enst00000462330 | sg00000184470 | txnrd2-206 | 22 | 19875522 | 19881369 | - | mRNA | protein_coding |
| 116025 | enst00000634471 | sg00000184470 | txnrd2-219 | 22 | 19875761 | 19883567 | - | lnc_RNA | retained_intron |
| 116962 | enst00000487165 | sg00000184470 | txnrd2-213 | 22 | 19875522 | 19884504 | - | lnc_RNA | retained_intron |
| 119747 | enst00000420617 | sg00000232926 | ac000078.1-201 | 22 | 19887289 | 19887970 | + | pseudogenic_transcript | processed_pseudogene |
| 130499 | enst00000634537 | sg00000184470 | txnrd2-220 | 22 | 19875522 | 19898041 | - | mRNA | non_stop_decay |
| -132086 | enst00000420012 | sg00000230485 | ac000077.1-201 | 22 | 19630750 | 19633574 | - | pseudogenic_transcript | processed_pseudogene |
| 148247 | enst00000475995 | sg00000184470 | txnrd2-210 | 22 | 19895016 | 19915789 | - | mRNA | protein_coding |
| 148295 | enst00000471835 | sg00000184470 | txnrd2-208 | 22 | 19911258 | 19915837 | - | lnc_RNA | retained_intron |
| 148824 | enst00000494454 | sg00000184470 | txnrd2-215 | 22 | 19875518 | 19916366 | - | lnc_RNA | retained_intron |
| 150635 | enst00000635155 | sg00000184470 | txnrd2-221 | 22 | 19891438 | 19918177 | - | lnc_RNA | processed_transcript |
| 150679 | enst00000484672 | sg00000184470 | txnrd2-211 | 22 | 19910935 | 19918221 | - | lnc_RNA | processed_transcript |
| 165011 | enst00000400518 | sg00000184470 | txnrd2-202 | 22 | 19875517 | 19932553 | - | mRNA | protein_coding |
| 165984 | enst00000491939 | sg00000184470 | txnrd2-214 | 22 | 19893902 | 19933526 | - | mRNA | protein_coding |
| 170637 | enst00000542719 | sg00000184470 | txnrd2-218 | 22 | 19875518 | 19938179 | - | mRNA | protein_coding |
| 174191 | enst00000403184 | sg00000093010 | comt-203 | 22 | 19941733 | 19965645 | + | mRNA | protein_coding |
| 174230 | enst00000361682 | sg00000093010 | comt-202 | 22 | 19941772 | 19969975 | + | mRNA | protein_coding |
| 174231 | enst00000403710 | sg00000093010 | comt-204 | 22 | 19941773 | 19968958 | + | mRNA | protein_coding |
| 174246 | enst00000407537 | sg00000093010 | comt-206 | 22 | 19941788 | 19968998 | + | mRNA | protein_coding |
| 174251 | enst00000467943 | sg00000093010 | comt-210 | 22 | 19941793 | 19962876 | + | lnc_RNA | retained_intron |
| 174261 | enst00000400519 | sg00000184470 | txnrd2-203 | 22 | 19875522 | 19941803 | - | mRNA | protein_coding |
| 174262 | enst00000334363 | sg00000184470 | txnrd2-201 | 22 | 19894258 | 19941804 | - | mRNA | protein_coding |
| 174265 | enst00000474308 | sg00000184470 | txnrd2-209 | 22 | 19875519 | 19941807 | - | mRNA | nonsense_mediated_decay |
| 174266 | enst00000496729 | sg00000184470 | txnrd2-217 | 22 | 19914900 | 19941808 | - | lnc_RNA | retained_intron |
| 174276 | enst00000400521 | sg00000184470 | txnrd2-204 | 22 | 19875522 | 19941818 | - | mRNA | protein_coding |
| 174278 | enst00000400525 | sg00000184470 | txnrd2-205 | 22 | 19875522 | 19941820 | - | mRNA | protein_coding |
| 183400 | enst00000412786 | sg00000093010 | comt-207 | 22 | 19950942 | 19968589 | + | mRNA | protein_coding |
| 183437 | enst00000207636 | sg00000093010 | comt-201 | 22 | 19950979 | 19969016 | + | mRNA | nonsense_mediated_decay |
| 183961 | enst00000406520 | sg00000093010 | comt-205 | 22 | 19951503 | 19969016 | + | mRNA | protein_coding |
| 195028 | enst00000449653 | sg00000093010 | comt-209 | 22 | 19962570 | 19968998 | + | mRNA | protein_coding |
| 195803 | enst00000493893 | sg00000093010 | comt-211 | 22 | 19963345 | 19964300 | + | lnc_RNA | processed_transcript |
| 196157 | enst00000428707 | sg00000093010 | comt-208 | 22 | 19963699 | 19967694 | + | mRNA | protein_coding |
| 196211 | enst00000585066 | sg00000284031 | mir4761-201 | 22 | 19963753 | 19963834 | + | miRNA | mirna |
| -198821 | enst00000629028 | sg00000281548 | linc00895-201 | 22 | 19565203 | 19566839 | - | lnc_RNA | lncrna |
| 208220 | enst00000480792 | sg00000099889 | arvcf-208 | 22 | 19973162 | 19975762 | - | lnc_RNA | processed_transcript |
| 211874 | enst00000495096 | sg00000099889 | arvcf-211 | 22 | 19969898 | 19979416 | - | lnc_RNA | retained_intron |
| 216211 | enst00000462319 | sg00000099889 | arvcf-205 | 22 | 19981545 | 19983753 | - | lnc_RNA | processed_transcript |
| 219551 | enst00000401994 | sg00000099889 | arvcf-202 | 22 | 19971228 | 19987093 | - | mRNA | protein_coding |
| 219551 | enst00000406522 | sg00000099889 | arvcf-204 | 22 | 19971228 | 19987093 | - | mRNA | protein_coding |
| 219613 | enst00000492625 | sg00000099889 | arvcf-210 | 22 | 19981382 | 19987155 | - | lnc_RNA | processed_transcript |
| 219648 | enst00000487793 | sg00000099889 | arvcf-209 | 22 | 19981152 | 19987190 | - | lnc_RNA | processed_transcript |
| 223250 | enst00000473551 | sg00000099889 | arvcf-207 | 22 | 19979997 | 19990792 | - | lnc_RNA | retained_intron |
| 223252 | enst00000406259 | sg00000099889 | arvcf-203 | 22 | 19971228 | 19990794 | - | mRNA | protein_coding |
| -238115 | enst00000406028 | sg00000184113 | cldn5-202 | 22 | 19523024 | 19527545 | - | mRNA | protein_coding |
| -240237 | enst00000413119 | sg00000184113 | cldn5-203 | 22 | 19523052 | 19525423 | - | mRNA | protein_coding |
| -240277 | enst00000403084 | sg00000184113 | cldn5-201 | 22 | 19523027 | 19525383 | - | mRNA | protein_coding |
| -241260 | enst00000618236 | sg00000184113 | cldn5-204 | 22 | 19523027 | 19524400 | - | mRNA | protein_coding |
| -242891 | enst00000661478 | sg00000287652 | ac000082.1-201 | 22 | 19520572 | 19522769 | - | lnc_RNA | lncrna |
| 249203 | enst00000467828 | sg00000099889 | arvcf-206 | 22 | 19981991 | 20016745 | - | lnc_RNA | processed_transcript |
| -249226 | enst00000493724 | sg00000093009 | cdc45-212 | 22 | 19516434 | 19520594 | + | lnc_RNA | retained_intron |
| 249281 | enst00000263207 | sg00000099889 | arvcf-201 | 22 | 19969896 | 20016823 | - | mRNA | protein_coding |
| 249472 | enst00000401886 | sg00000183597 | tango2-205 | 22 | 20017014 | 20065358 | + | mRNA | protein_coding |
| 249472 | enst00000471707 | sg00000183597 | tango2-219 | 22 | 20017014 | 20056204 | + | lnc_RNA | retained_intron |
| 249489 | enst00000432198 | sg00000183597 | tango2-209 | 22 | 20017031 | 20052584 | + | mRNA | protein_coding |
| 249489 | enst00000475446 | sg00000183597 | tango2-220 | 22 | 20017031 | 20048180 | + | lnc_RNA | processed_transcript |
| 253527 | enst00000411907 | sg00000183597 | tango2-206 | 22 | 20021069 | 20061656 | + | lnc_RNA | processed_transcript |
| 253527 | enst00000420290 | sg00000183597 | tango2-207 | 22 | 20021069 | 20065925 | + | mRNA | protein_coding |
| 253527 | enst00000456048 | sg00000183597 | tango2-217 | 22 | 20021069 | 20065925 | + | mRNA | protein_coding |
| 253527 | enst00000447208 | sg00000183597 | tango2-214 | 22 | 20021069 | 20065925 | + | mRNA | protein_coding |
| 253527 | enst00000434570 | sg00000183597 | tango2-212 | 22 | 20021069 | 20065925 | + | mRNA | protein_coding |
| 253527 | enst00000432883 | sg00000183597 | tango2-210 | 22 | 20021069 | 20065925 | + | mRNA | protein_coding |
| 253530 | enst00000398042 | sg00000183597 | tango2-202 | 22 | 20021072 | 20065926 | + | mRNA | protein_coding |
| 253547 | enst00000399807 | sg00000183597 | tango2-203 | 22 | 20021089 | 20065862 | + | mRNA | nonsense_mediated_decay |
| 253560 | enst00000450664 | sg00000183597 | tango2-216 | 22 | 20021102 | 20061576 | + | mRNA | protein_coding |
| 253565 | enst00000450019 | sg00000183597 | tango2-215 | 22 | 20021107 | 20065264 | + | mRNA | nonsense_mediated_decay |
| 253568 | enst00000327374 | sg00000183597 | tango2-201 | 22 | 20021110 | 20067164 | + | mRNA | protein_coding |
| 253580 | enst00000479679 | sg00000183597 | tango2-222 | 22 | 20021122 | 20053542 | + | lnc_RNA | processed_transcript |
| 253585 | enst00000430807 | sg00000183597 | tango2-208 | 22 | 20021127 | 20063421 | + | mRNA | nonsense_mediated_decay |
| 253597 | enst00000401833 | sg00000183597 | tango2-204 | 22 | 20021139 | 20065364 | + | mRNA | protein_coding |
| 253613 | enst00000434168 | sg00000183597 | tango2-211 | 22 | 20021155 | 20063411 | + | mRNA | protein_coding |
| -260247 | enst00000671972 | sg00000093009 | cdc45-213 | 22 | 19505413 | 19520601 | + | mRNA | protein_coding |
| -260606 | enst00000471470 | sg00000093009 | cdc45-208 | 22 | 19505054 | 19514784 | + | lnc_RNA | retained_intron |
| 265597 | enst00000385288 | sg00000208023 | mir185-201 | 22 | 20033139 | 20033220 | + | miRNA | mirna |
| 269217 | enst00000444651 | sg00000183597 | tango2-213 | 22 | 20036759 | 20064907 | + | mRNA | nonsense_mediated_decay |
| 269217 | enst00000462579 | sg00000183597 | tango2-218 | 22 | 20036759 | 20061802 | + | lnc_RNA | retained_intron |
| 269218 | enst00000485715 | sg00000183597 | tango2-224 | 22 | 20036760 | 20063383 | + | lnc_RNA | processed_transcript |
| 269218 | enst00000484373 | sg00000183597 | tango2-223 | 22 | 20036760 | 20056241 | + | lnc_RNA | retained_intron |
| -282909 | enst00000428937 | sg00000093009 | cdc45-204 | 22 | 19482751 | 19505370 | + | mRNA | nonsense_mediated_decay |
| -285510 | enst00000487669 | sg00000093009 | cdc45-210 | 22 | 19480150 | 19497444 | + | lnc_RNA | retained_intron |
| -285722 | enst00000404724 | sg00000093009 | cdc45-202 | 22 | 19479938 | 19520578 | + | mRNA | protein_coding |
| -285740 | enst00000263201 | sg00000093009 | cdc45-201 | 22 | 19479920 | 19520608 | + | mRNA | protein_coding |
| -285744 | enst00000672837 | sg00000093009 | cdc45-214 | 22 | 19479916 | 19520605 | + | mRNA | nonsense_mediated_decay |
| -285750 | enst00000438587 | sg00000093009 | cdc45-206 | 22 | 19479910 | 19520601 | + | mRNA | nonsense_mediated_decay |
| -285759 | enst00000483431 | sg00000093009 | cdc45-209 | 22 | 19479901 | 19495986 | + | lnc_RNA | processed_transcript |
| -285834 | enst00000437685 | sg00000093009 | cdc45-205 | 22 | 19479826 | 19520611 | + | mRNA | protein_coding |
| 285893 | enst00000490583 | sg00000183597 | tango2-226 | 22 | 20053435 | 20064959 | + | lnc_RNA | processed_transcript |
| -285922 | enst00000491520 | sg00000093009 | cdc45-211 | 22 | 19479738 | 19483873 | + | lnc_RNA | retained_intron |
| -286201 | enst00000455750 | sg00000093009 | cdc45-207 | 22 | 19479459 | 19482766 | + | mRNA | protein_coding |
| -286203 | enst00000407835 | sg00000093009 | cdc45-203 | 22 | 19479457 | 19520612 | + | mRNA | protein_coding |
| -286458 | enst00000447868 | sg00000070010 | ufd1-204 | 22 | 19455680 | 19479202 | - | mRNA | protein_coding |
| -286467 | enst00000263202 | sg00000070010 | ufd1-201 | 22 | 19449911 | 19479193 | - | mRNA | protein_coding |
| -286473 | enst00000489406 | sg00000070010 | ufd1-209 | 22 | 19467403 | 19479187 | - | lnc_RNA | retained_intron |
| -286475 | enst00000421968 | sg00000070010 | ufd1-203 | 22 | 19456880 | 19479185 | - | mRNA | protein_coding |
| -286488 | enst00000399523 | sg00000070010 | ufd1-202 | 22 | 19450621 | 19479172 | - | mRNA | protein_coding |
| -286488 | enst00000459854 | sg00000070010 | ufd1-205 | 22 | 19450621 | 19479172 | - | lnc_RNA | retained_intron |
| -286516 | enst00000474226 | sg00000070010 | ufd1-207 | 22 | 19467895 | 19479144 | - | mRNA | protein_coding |
| -286577 | enst00000484101 | sg00000070010 | ufd1-208 | 22 | 19465202 | 19479083 | - | lnc_RNA | processed_transcript |
| -286729 | enst00000494054 | sg00000070010 | ufd1-210 | 22 | 19467873 | 19478931 | - | mRNA | protein_coding |
| 288401 | enst00000490121 | sg00000183597 | tango2-225 | 22 | 20055943 | 20061227 | + | lnc_RNA | processed_transcript |
| 296031 | enst00000476940 | sg00000183597 | tango2-221 | 22 | 20063573 | 20064929 | + | lnc_RNA | processed_transcript |
| 297709 | enst00000628442 | sg00000236540 | ac006547.1-201 | 22 | 20058030 | 20065251 | - | lnc_RNA | lncrna |
| -297944 | enst00000466373 | sg00000070010 | ufd1-206 | 22 | 19450625 | 19467716 | - | lnc_RNA | retained_intron |
| 298163 | enst00000600090 | sg00000268292 | ac006547.3-201 | 22 | 20064552 | 20065705 | - | lnc_RNA | lncrna |
| 298535 | enst00000415503 | sg00000236540 | ac006547.1-202 | 22 | 20062980 | 20066077 | - | lnc_RNA | lncrna |
| 298892 | enst00000608610 | sg00000236540 | ac006547.1-203 | 22 | 20063011 | 20066434 | - | lnc_RNA | lncrna |
| 301620 | enst00000600937 | sg00000236540 | ac006547.1-204 | 22 | 20063011 | 20069162 | - | lnc_RNA | lncrna |
| 301623 | enst00000609644 | sg00000236540 | ac006547.1-210 | 22 | 20063034 | 20069165 | - | lnc_RNA | lncrna |
| 302719 | enst00000595864 | sg00000236540 | ac006547.1-205 | 22 | 20063011 | 20070261 | - | lnc_RNA | lncrna |
| 302912 | enst00000600617 | sg00000236540 | ac006547.1-206 | 22 | 20063011 | 20070454 | - | lnc_RNA | lncrna |
| 302958 | enst00000601746 | sg00000236540 | ac006547.1-207 | 22 | 20063011 | 20070500 | - | lnc_RNA | lncrna |
| 302980 | enst00000598339 | sg00000236540 | ac006547.1-208 | 22 | 20063011 | 20070522 | - | lnc_RNA | lncrna |
| 303001 | enst00000609191 | sg00000236540 | ac006547.1-211 | 22 | 20063034 | 20070543 | - | lnc_RNA | lncrna |
| 303027 | enst00000596334 | sg00000236540 | ac006547.1-209 | 22 | 20063011 | 20070569 | - | lnc_RNA | lncrna |
| 303174 | enst00000619837 | sg00000277950 | ac006547.4-201 | 22 | 20070716 | 20070965 | + | ncRNA | misc_rna |
| -309157 | enst00000608816 | sg00000273212 | ac000068.2-201 | 22 | 19456503 | 19456962 | + | lnc_RNA | lncrna |
| -311481 | enst00000607934 | sg00000273300 | ac000068.3-201 | 22 | 19454179 | 19454605 | + | lnc_RNA | lncrna |
| 312690 | enst00000383024 | sg00000128191 | dgcr8-202 | 22 | 20080232 | 20111875 | + | mRNA | protein_coding |
| 312699 | enst00000351989 | sg00000128191 | dgcr8-201 | 22 | 20080241 | 20111872 | + | mRNA | protein_coding |
| 313027 | enst00000457069 | sg00000128191 | dgcr8-204 | 22 | 20080569 | 20086339 | + | mRNA | protein_coding |
| -317428 | enst00000399562 | sg00000242259 | c22orf39-202 | 22 | 19441777 | 19448232 | - | mRNA | protein_coding |
| -317428 | enst00000611555 | sg00000242259 | c22orf39-206 | 22 | 19443150 | 19448232 | - | mRNA | protein_coding |
| -317428 | enst00000542103 | sg00000242259 | c22orf39-205 | 22 | 19440908 | 19448232 | - | mRNA | protein_coding |
| -317767 | enst00000431090 | sg00000185065 | ac000068.1-201 | 22 | 19447893 | 19450105 | + | lnc_RNA | lncrna |
| -317963 | enst00000333059 | sg00000242259 | c22orf39-201 | 22 | 19443371 | 19447697 | - | mRNA | protein_coding |
| -317968 | enst00000399568 | sg00000242259 | c22orf39-203 | 22 | 19440886 | 19447692 | - | mRNA | protein_coding |
| -317969 | enst00000509549 | sg00000242259 | c22orf39-204 | 22 | 19351368 | 19447691 | - | mRNA | nonsense_mediated_decay |
| 318204 | enst00000580330 | sg00000284140 | mir3618-201 | 22 | 20085746 | 20085833 | + | miRNA | mirna |
| -318210 | enst00000452818 | sg00000100084 | hira-203 | 22 | 19398068 | 19447450 | - | mRNA | nonsense_mediated_decay |
| 318278 | enst00000495826 | sg00000128191 | dgcr8-209 | 22 | 20085820 | 20111872 | + | lnc_RNA | retained_intron |
| 318280 | enst00000407755 | sg00000128191 | dgcr8-203 | 22 | 20085822 | 20111872 | + | mRNA | protein_coding |
| 318516 | enst00000408439 | sg00000284464 | mir1306-201 | 22 | 20086058 | 20086142 | + | miRNA | mirna |
| 319494 | enst00000498171 | sg00000128191 | dgcr8-210 | 22 | 20087036 | 20111877 | + | lnc_RNA | retained_intron |
| 327170 | enst00000491892 | sg00000128191 | dgcr8-207 | 22 | 20094712 | 20107036 | + | lnc_RNA | retained_intron |
| -332721 | enst00000471259 | sg00000185608 | mrpl40-203 | 22 | 19432939 | 19436010 | + | lnc_RNA | processed_transcript |
| -333081 | enst00000443660 | sg00000185608 | mrpl40-202 | 22 | 19432579 | 19436067 | + | lnc_RNA | processed_transcript |
| -333758 | enst00000333130 | sg00000185608 | mrpl40-201 | 22 | 19431902 | 19436075 | + | mRNA | protein_coding |
| -333927 | enst00000263208 | sg00000100084 | hira-201 | 22 | 19330698 | 19431733 | - | mRNA | protein_coding |
| -333964 | enst00000340170 | sg00000100084 | hira-202 | 22 | 19330698 | 19431696 | - | mRNA | protein_coding |
| -335397 | enst00000464189 | sg00000100084 | hira-204 | 22 | 19398061 | 19430263 | - | lnc_RNA | processed_transcript |
| 338640 | enst00000495351 | sg00000128191 | dgcr8-208 | 22 | 20106182 | 20107575 | + | lnc_RNA | retained_intron |
| 339025 | enst00000485802 | sg00000128191 | dgcr8-206 | 22 | 20106567 | 20109184 | + | lnc_RNA | retained_intron |
| 340030 | enst00000475941 | sg00000128191 | dgcr8-205 | 22 | 20107572 | 20111261 | + | lnc_RNA | retained_intron |
| 344333 | enst00000412713 | sg00000243762 | ac006547.2-201 | 22 | 20110821 | 20111875 | - | lnc_RNA | lncrna |
| 345636 | enst00000480339 | sg00000099899 | trmt2a-213 | 22 | 20112301 | 20113178 | - | lnc_RNA | retained_intron |
| 345836 | enst00000487378 | sg00000099899 | trmt2a-215 | 22 | 20112499 | 20113378 | - | lnc_RNA | retained_intron |
| 345965 | enst00000444845 | sg00000099899 | trmt2a-206 | 22 | 20112301 | 20113507 | - | mRNA | protein_coding |
| 346256 | enst00000487668 | sg00000099899 | trmt2a-216 | 22 | 20112328 | 20113798 | - | lnc_RNA | retained_intron |
| 346266 | enst00000444256 | sg00000099899 | trmt2a-205 | 22 | 20112568 | 20113808 | - | mRNA | protein_coding |
| 347209 | enst00000620368 | sg00000278278 | mir6816-201 | 22 | 20114686 | 20114751 | - | miRNA | mirna |
| 347326 | enst00000488335 | sg00000099899 | trmt2a-217 | 22 | 20113650 | 20114868 | - | lnc_RNA | processed_transcript |
| 347850 | enst00000463710 | sg00000099899 | trmt2a-209 | 22 | 20113704 | 20115392 | - | lnc_RNA | retained_intron |
| 347897 | enst00000471040 | sg00000099899 | trmt2a-212 | 22 | 20113486 | 20115439 | - | lnc_RNA | retained_intron |
| 348080 | enst00000459644 | sg00000099899 | trmt2a-208 | 22 | 20114767 | 20115622 | - | lnc_RNA | retained_intron |
| 348146 | enst00000492988 | sg00000099899 | trmt2a-218 | 22 | 20113118 | 20115688 | - | lnc_RNA | processed_transcript |
| 348270 | enst00000494820 | sg00000099899 | trmt2a-220 | 22 | 20112892 | 20115812 | - | lnc_RNA | retained_intron |
| 348396 | enst00000432879 | sg00000099901 | ranbp1-209 | 22 | 20115938 | 20122377 | + | mRNA | protein_coding |
| 348396 | enst00000435265 | sg00000099901 | ranbp1-210 | 22 | 20115938 | 20127181 | + | mRNA | nonsense_mediated_decay |
| 348558 | enst00000480460 | sg00000099899 | trmt2a-214 | 22 | 20115349 | 20116100 | - | lnc_RNA | processed_transcript |
| 348562 | enst00000430524 | sg00000099901 | ranbp1-208 | 22 | 20116104 | 20127355 | + | mRNA | protein_coding |
| 349008 | enst00000468917 | sg00000099899 | trmt2a-211 | 22 | 20115337 | 20116550 | - | lnc_RNA | retained_intron |
| 349641 | enst00000494641 | sg00000099899 | trmt2a-219 | 22 | 20115577 | 20117183 | - | lnc_RNA | retained_intron |
| 349661 | enst00000464535 | sg00000099899 | trmt2a-210 | 22 | 20115610 | 20117203 | - | lnc_RNA | retained_intron |
| 349680 | enst00000439169 | sg00000099899 | trmt2a-204 | 22 | 20112338 | 20117222 | - | mRNA | protein_coding |
| 349684 | enst00000252136 | sg00000099899 | trmt2a-201 | 22 | 20111875 | 20117226 | - | mRNA | protein_coding |
| 349697 | enst00000445045 | sg00000099899 | trmt2a-207 | 22 | 20116242 | 20117239 | - | mRNA | protein_coding |
| 349703 | enst00000404751 | sg00000099899 | trmt2a-203 | 22 | 20112304 | 20117245 | - | mRNA | protein_coding |
| 349850 | enst00000403707 | sg00000099899 | trmt2a-202 | 22 | 20111875 | 20117392 | - | mRNA | protein_coding |
| 349882 | enst00000402752 | sg00000099901 | ranbp1-202 | 22 | 20117424 | 20127355 | + | mRNA | protein_coding |
| 349982 | enst00000488484 | sg00000099901 | ranbp1-214 | 22 | 20117524 | 20122684 | + | lnc_RNA | retained_intron |
| 350006 | enst00000331821 | sg00000099901 | ranbp1-201 | 22 | 20117548 | 20127181 | + | mRNA | protein_coding |
| 350015 | enst00000411892 | sg00000099901 | ranbp1-203 | 22 | 20117557 | 20125488 | + | mRNA | protein_coding |
| 350111 | enst00000467920 | sg00000099901 | ranbp1-212 | 22 | 20117653 | 20119529 | + | lnc_RNA | processed_transcript |
| 350240 | enst00000416427 | sg00000099901 | ranbp1-204 | 22 | 20117782 | 20122421 | + | mRNA | protein_coding |
| 350333 | enst00000421656 | sg00000099901 | ranbp1-206 | 22 | 20117875 | 20122421 | + | mRNA | protein_coding |
| 350392 | enst00000423859 | sg00000099901 | ranbp1-207 | 22 | 20117934 | 20126627 | + | mRNA | protein_coding |
| 350411 | enst00000418705 | sg00000099901 | ranbp1-205 | 22 | 20117953 | 20127035 | + | mRNA | protein_coding |
| 355065 | enst00000448394 | sg00000099901 | ranbp1-211 | 22 | 20122607 | 20127353 | + | lnc_RNA | processed_transcript |
| 356597 | enst00000486575 | sg00000099901 | ranbp1-213 | 22 | 20124139 | 20127181 | + | lnc_RNA | retained_intron |
| 358860 | enst00000578179 | sg00000264346 | snora77b-201 | 22 | 20126402 | 20126526 | + | snoRNA | snorna |
| 361914 | enst00000436518 | sg00000099904 | zdhhc8-204 | 22 | 20129456 | 20139909 | + | mRNA | protein_coding |
| 364265 | enst00000334554 | sg00000099904 | zdhhc8-202 | 22 | 20131807 | 20148007 | + | mRNA | protein_coding |
| 364406 | enst00000320602 | sg00000099904 | zdhhc8-201 | 22 | 20131948 | 20146450 | + | mRNA | protein_coding |
| 364406 | enst00000405930 | sg00000099904 | zdhhc8-203 | 22 | 20131948 | 20148006 | + | mRNA | protein_coding |
| 364453 | enst00000468112 | sg00000099904 | zdhhc8-205 | 22 | 20131995 | 20141532 | + | lnc_RNA | processed_transcript |
| 372395 | enst00000469212 | sg00000099904 | zdhhc8-206 | 22 | 20139937 | 20141326 | + | lnc_RNA | retained_intron |
| 372863 | enst00000472497 | sg00000099904 | zdhhc8-207 | 22 | 20140405 | 20142987 | + | lnc_RNA | retained_intron |
| 382361 | enst00000444532 | sg00000234409 | ccdc188-202 | 22 | 20148586 | 20149903 | - | lnc_RNA | retained_intron |
| 383513 | enst00000439765 | sg00000234409 | ccdc188-201 | 22 | 20148416 | 20151055 | - | mRNA | protein_coding |
| -399894 | enst00000463821 | sg00000244296 | rn7sl168p-201 | 22 | 19365766 | 19366044 | + | ncRNA | misc_rna |
| 437376 | enst00000506039 | sg00000249923 | ac007663.2-201 | 22 | 20198729 | 20204918 | - | lnc_RNA | lncrna |
| 438855 | enst00000609602 | sg00000236499 | linc00896-202 | 22 | 20206397 | 20208524 | + | lnc_RNA | lncrna |
| 439035 | enst00000423736 | sg00000236499 | linc00896-201 | 22 | 20206577 | 20207183 | + | lnc_RNA | lncrna |
| -473691 | enst00000664918 | sg00000287146 | ac000085.1-201 | 22 | 19291969 | 19328901 | + | lnc_RNA | lncrna |
| -473941 | enst00000427926 | sg00000070371 | cltcl1-202 | 22 | 19179473 | 19291719 | - | mRNA | protein_coding |
| -473944 | enst00000449918 | sg00000070371 | cltcl1-203 | 22 | 19254034 | 19291716 | - | mRNA | protein_coding |
| -473975 | enst00000621271 | sg00000070371 | cltcl1-211 | 22 | 19179473 | 19291685 | - | mRNA | protein_coding |
| -473999 | enst00000617103 | sg00000070371 | cltcl1-209 | 22 | 19180733 | 19291661 | - | mRNA | nonsense_mediated_decay |
| -473999 | enst00000615606 | sg00000070371 | cltcl1-208 | 22 | 19180733 | 19291661 | - | lnc_RNA | retained_intron |
| 476142 | enst00000425986 | sg00000040608 | rtn4r-203 | 22 | 20241417 | 20243684 | - | mRNA | protein_coding |
| 481669 | enst00000408112 | sg00000221039 | mir1286-201 | 22 | 20249134 | 20249211 | - | miRNA | mirna |
Source file: /hps/research1/birney/users/adrien/analyses/cancer_DNA_promethion/run_1_2_3_4/DNA_pipeline_2/results/methylation/pycometh_meth_comp_CGI_3/out.tsv.gz
MD5 hash: 9aa0e3f69cb4e12345c3758eb68a5efc