CpG interval report generated on 20/05/20 with pycoMeth 0.4.6

Interval details
pvalue rank chromosome start end length number of samples number of CpGs pvalue adjusted pvalue
#27 19 40612973 40614827 1854 3 66 2.82794e-25 1.04162e-22
Methylation log-likelihood ratio by CpG position
Distribution of CpG methylation log-likelihood ratio by sample
Closest transcripts TSS
distance to tss transcript id gene id transcript name chromosome start end strand feature type transcript biotype
0 enst00000595118 sg00000090006 ltbp4-212 19 40613596 40629817 + lnc_RNA retained_intron
0 enst00000612121 sg00000090006 ltbp4-233 19 40613135 40622439 + mRNA protein_coding
0 enst00000600499 sg00000090006 ltbp4-228 19 40613373 40619382 + lnc_RNA retained_intron
0 enst00000610893 sg00000090006 ltbp4-232 19 40613375 40619388 + lnc_RNA retained_intron
0 enst00000612845 sg00000090006 ltbp4-234 19 40613414 40619376 + lnc_RNA retained_intron
0 enst00000599724 sg00000090006 ltbp4-226 19 40613448 40626006 + mRNA protein_coding
0 enst00000597071 sg00000090006 ltbp4-216 19 40613456 40622462 + mRNA protein_coding
0 enst00000602251 sg00000090006 ltbp4-231 19 40613596 40616984 + lnc_RNA retained_intron
0 enst00000618486 sg00000090006 ltbp4-236 19 40613916 40622439 + mRNA protein_coding
0 enst00000593463 sg00000090006 ltbp4-207 19 40613916 40623642 + mRNA protein_coding
0 enst00000318809 sg00000090006 ltbp4-204 19 40614111 40629649 + lnc_RNA retained_intron
0 enst00000601464 sg00000090006 ltbp4-230 19 40614142 40617020 + lnc_RNA retained_intron
0 enst00000622565 sg00000090006 ltbp4-239 19 40613718 40623633 + lnc_RNA retained_intron
0 enst00000596351 sg00000090006 ltbp4-215 19 40614144 40622462 + lnc_RNA retained_intron
0 enst00000617753 sg00000090006 ltbp4-235 19 40614176 40617197 + lnc_RNA retained_intron
0 enst00000622107 sg00000090006 ltbp4-237 19 40614176 40623649 + lnc_RNA retained_intron
0 enst00000594448 sg00000090006 ltbp4-210 19 40614180 40622405 + lnc_RNA retained_intron
0 enst00000595665 sg00000090006 ltbp4-214 19 40614192 40623645 + lnc_RNA retained_intron
0 enst00000597816 sg00000090006 ltbp4-218 19 40614142 40624046 + lnc_RNA retained_intron
-1062 enst00000601032 sg00000090006 ltbp4-229 19 40611911 40627720 + mRNA protein_coding
2083 enst00000622457 sg00000090006 ltbp4-238 19 40616910 40623969 + mRNA protein_coding
-2208 enst00000598055 sg00000090006 ltbp4-219 19 40610765 40613446 + lnc_RNA processed_transcript
-2760 enst00000598256 sg00000090006 ltbp4-222 19 40610213 40611922 + lnc_RNA retained_intron
-2805 enst00000546155 sg00000090006 ltbp4-206 19 40610168 40613828 + lnc_RNA retained_intron
-3227 enst00000243562 sg00000090006 ltbp4-202 19 40609746 40629817 + mRNA protein_coding
-6507 enst00000595529 sg00000090006 ltbp4-213 19 40606466 40608921 + lnc_RNA retained_intron
7561 enst00000594116 sg00000090006 ltbp4-209 19 40622388 40623946 + lnc_RNA retained_intron
8078 enst00000598178 sg00000090006 ltbp4-221 19 40622905 40623932 + lnc_RNA retained_intron
9079 enst00000597151 sg00000090006 ltbp4-217 19 40623906 40625964 + lnc_RNA retained_intron
-11602 enst00000396819 sg00000090006 ltbp4-205 19 40601371 40629623 + mRNA protein_coding
12367 enst00000599225 sg00000090006 ltbp4-225 19 40627194 40629499 + mRNA protein_coding
12432 enst00000598166 sg00000090006 ltbp4-220 19 40627259 40629811 + mRNA protein_coding
-12989 enst00000593738 sg00000090006 ltbp4-208 19 40599984 40605142 + lnc_RNA retained_intron
-13297 enst00000598717 sg00000090006 ltbp4-223 19 40599676 40613180 + lnc_RNA retained_intron
-14448 enst00000594537 sg00000090006 ltbp4-211 19 40598525 40605466 + mRNA nonsense_mediated_decay
-15738 enst00000308370 sg00000090006 ltbp4-203 19 40597235 40629623 + mRNA protein_coding
-18446 enst00000599016 sg00000090006 ltbp4-224 19 40594527 40605606 + mRNA nonsense_mediated_decay
-19807 enst00000204005 sg00000090006 ltbp4-201 19 40593166 40629818 + mRNA protein_coding
-20090 enst00000600026 sg00000090006 ltbp4-227 19 40592883 40605153 + mRNA nonsense_mediated_decay
-22764 enst00000602239 sg00000160410 shkbp1-228 19 40590209 40591087 + lnc_RNA retained_intron
-23872 enst00000594862 sg00000160410 shkbp1-204 19 40589101 40591399 + mRNA protein_coding
-24234 enst00000595726 sg00000160410 shkbp1-208 19 40588739 40591397 + mRNA protein_coding
-26077 enst00000597396 sg00000160410 shkbp1-214 19 40586896 40591392 + mRNA protein_coding
-26118 enst00000596163 sg00000160410 shkbp1-212 19 40586855 40591296 + mRNA nonsense_mediated_decay
-26199 enst00000594298 sg00000160410 shkbp1-203 19 40586774 40591396 + mRNA protein_coding
-26280 enst00000599833 sg00000160410 shkbp1-221 19 40586693 40590806 + lnc_RNA retained_intron
-27400 enst00000597649 sg00000160410 shkbp1-215 19 40585573 40590355 + lnc_RNA processed_transcript
-29324 enst00000600320 sg00000160410 shkbp1-222 19 40583649 40591368 + mRNA protein_coding
-29364 enst00000593764 sg00000160410 shkbp1-202 19 40583609 40591288 + mRNA protein_coding
-29507 enst00000602011 sg00000160410 shkbp1-227 19 40583466 40591179 + mRNA protein_coding
-29513 enst00000600791 sg00000160410 shkbp1-226 19 40583460 40588803 + lnc_RNA retained_intron
-32074 enst00000595874 sg00000160410 shkbp1-210 19 40580899 40582515 + lnc_RNA retained_intron
-32806 enst00000598201 sg00000160410 shkbp1-216 19 40580167 40591395 + lnc_RNA retained_intron
-34777 enst00000598907 sg00000160410 shkbp1-218 19 40578196 40580883 + lnc_RNA retained_intron
-35744 enst00000594973 sg00000160410 shkbp1-205 19 40577229 40591395 + lnc_RNA retained_intron
-35795 enst00000597325 sg00000160410 shkbp1-213 19 40577178 40578177 + lnc_RNA retained_intron
-35797 enst00000595523 sg00000160410 shkbp1-206 19 40577176 40580472 + mRNA nonsense_mediated_decay
-35815 enst00000598558 sg00000160410 shkbp1-217 19 40577158 40580463 + lnc_RNA retained_intron
-35815 enst00000595631 sg00000160410 shkbp1-207 19 40577158 40580627 + mRNA protein_coding
-35891 enst00000600552 sg00000160410 shkbp1-223 19 40577082 40580395 + lnc_RNA processed_transcript
-36057 enst00000600718 sg00000160410 shkbp1-224 19 40576916 40591368 + mRNA protein_coding
-36086 enst00000599716 sg00000160410 shkbp1-220 19 40576887 40577929 + lnc_RNA retained_intron
-36100 enst00000291842 sg00000160410 shkbp1-201 19 40576873 40591397 + mRNA protein_coding
-36106 enst00000599575 sg00000160410 shkbp1-219 19 40576867 40580838 + mRNA nonsense_mediated_decay
-36108 enst00000595945 sg00000160410 shkbp1-211 19 40576865 40580866 + mRNA nonsense_mediated_decay
-36118 enst00000600733 sg00000160410 shkbp1-225 19 40576855 40591397 + mRNA protein_coding
-36120 enst00000595803 sg00000160410 shkbp1-209 19 40576853 40580650 + mRNA nonsense_mediated_decay
-41333 enst00000595690 sg00000160460 ac020929.1-212 19 40571640 40575577 + lnc_RNA retained_intron
-41429 enst00000596411 sg00000160460 ac020929.1-211 19 40571544 40576458 + lnc_RNA retained_intron
-41927 enst00000593816 sg00000160460 ac020929.1-210 19 40571046 40575605 + lnc_RNA processed_transcript
-41934 enst00000599926 sg00000160460 ac020929.1-209 19 40571039 40575663 + lnc_RNA processed_transcript
68028 enst00000593367 sg00000105245 numbl-203 19 40673522 40682855 - lnc_RNA retained_intron
68097 enst00000600967 sg00000105245 numbl-211 19 40673444 40682924 - mRNA protein_coding
70128 enst00000599786 sg00000105245 numbl-209 19 40680998 40684955 - lnc_RNA retained_intron
71322 enst00000598759 sg00000105245 numbl-205 19 40684088 40686149 - lnc_RNA retained_intron
74765 enst00000598773 sg00000105245 numbl-206 19 40673552 40689592 - mRNA protein_coding
75295 enst00000540131 sg00000105245 numbl-202 19 40667341 40690122 - mRNA protein_coding
75337 enst00000600636 sg00000105245 numbl-210 19 40681003 40690164 - mRNA protein_coding
75726 enst00000598779 sg00000105245 numbl-207 19 40667034 40690553 - mRNA protein_coding
75781 enst00000599594 sg00000105245 numbl-208 19 40683024 40690608 - lnc_RNA processed_transcript
75824 enst00000252891 sg00000105245 numbl-201 19 40665905 40690651 - mRNA protein_coding
76145 enst00000595741 sg00000105245 numbl-204 19 40680987 40690972 - mRNA protein_coding
-82207 enst00000593932 sg00000160460 ac020929.1-208 19 40530766 40534856 + lnc_RNA retained_intron
-82447 enst00000596900 sg00000160460 ac020929.1-207 19 40530526 40555302 + lnc_RNA retained_intron
-82485 enst00000392023 sg00000160460 ac020929.1-206 19 40530488 40560752 + mRNA protein_coding
86632 enst00000593724 sg00000123815 coq8b-205 19 40691530 40701459 - lnc_RNA retained_intron
93336 enst00000411352 sg00000223284 rnu6-195p-201 19 40708055 40708163 - snRNA snrna
99808 enst00000594490 sg00000123815 coq8b-207 19 40705334 40714635 - mRNA protein_coding
99958 enst00000601304 sg00000123815 coq8b-215 19 40703722 40714785 - mRNA nonsense_mediated_decay
100244 enst00000596357 sg00000123815 coq8b-210 19 40710095 40715071 - mRNA protein_coding
100246 enst00000243583 sg00000123815 coq8b-201 19 40691530 40715073 - mRNA protein_coding
100257 enst00000600080 sg00000123815 coq8b-213 19 40705118 40715084 - mRNA protein_coding
100258 enst00000595254 sg00000123815 coq8b-209 19 40700405 40715085 - mRNA protein_coding
100271 enst00000601967 sg00000123815 coq8b-217 19 40703742 40715098 - mRNA protein_coding
100279 enst00000593544 sg00000123815 coq8b-203 19 40705312 40715106 - lnc_RNA retained_intron
-100359 enst00000597389 sg00000160460 ac020929.1-205 19 40512614 40575569 + mRNA nonsense_mediated_decay
100786 enst00000600707 sg00000123815 coq8b-214 19 40710062 40715613 - mRNA protein_coding
100789 enst00000593723 sg00000123815 coq8b-204 19 40714603 40715616 - mRNA protein_coding
100958 enst00000596455 sg00000123815 coq8b-211 19 40702599 40715785 - lnc_RNA retained_intron
101140 enst00000599643 sg00000123815 coq8b-212 19 40702600 40715967 - mRNA nonsense_mediated_decay
102058 enst00000601451 sg00000123815 coq8b-216 19 40704168 40716885 - lnc_RNA retained_intron
102059 enst00000324464 sg00000123815 coq8b-202 19 40691530 40716886 - mRNA protein_coding
102069 enst00000594720 sg00000123815 coq8b-208 19 40705367 40716896 - mRNA protein_coding
102285 enst00000263370 sg00000086544 itpkc-201 19 40717112 40740860 + mRNA protein_coding
103380 enst00000594084 sg00000123815 coq8b-206 19 40705342 40718207 - mRNA protein_coding
114494 enst00000597003 sg00000086544 itpkc-202 19 40729321 40739669 + mRNA nonsense_mediated_decay
-115544 enst00000598775 sg00000160460 ac020929.1-204 19 40497429 40502492 + lnc_RNA retained_intron
126853 enst00000594163 sg00000188493 c19orf54-204 19 40740862 40741680 - lnc_RNA processed_transcript
134726 enst00000596940 sg00000188493 c19orf54-206 19 40740861 40749553 - mRNA protein_coding
134767 enst00000600139 sg00000188493 c19orf54-210 19 40744944 40749594 - mRNA protein_coding
134778 enst00000598352 sg00000188493 c19orf54-208 19 40741822 40749605 - mRNA protein_coding
135475 enst00000598485 sg00000188493 c19orf54-209 19 40740862 40750302 - mRNA protein_coding
135621 enst00000597507 sg00000188493 c19orf54-207 19 40741791 40750448 - mRNA nonsense_mediated_decay
135650 enst00000378313 sg00000188493 c19orf54-201 19 40740861 40750477 - mRNA protein_coding
135665 enst00000470681 sg00000188493 c19orf54-203 19 40740856 40750492 - mRNA protein_coding
135726 enst00000469741 sg00000188493 c19orf54-202 19 40740856 40750553 - mRNA nonsense_mediated_decay
135810 enst00000601545 sg00000077312 snrpa-211 19 40750637 40765021 + mRNA protein_coding
136040 enst00000601253 sg00000077312 snrpa-209 19 40750867 40759579 + mRNA protein_coding
136041 enst00000597353 sg00000077312 snrpa-203 19 40750868 40762920 + mRNA protein_coding
136044 enst00000599362 sg00000077312 snrpa-206 19 40750871 40759610 + mRNA protein_coding
136048 enst00000599570 sg00000077312 snrpa-207 19 40750875 40759610 + lnc_RNA processed_transcript
136376 enst00000243563 sg00000077312 snrpa-201 19 40751203 40765389 + mRNA protein_coding
136382 enst00000601393 sg00000077312 snrpa-210 19 40751209 40765150 + mRNA protein_coding
136447 enst00000598923 sg00000077312 snrpa-205 19 40751274 40763291 + lnc_RNA retained_intron
136471 enst00000600456 sg00000077312 snrpa-208 19 40751298 40759579 + mRNA nonsense_mediated_decay
136726 enst00000596809 sg00000188493 c19orf54-205 19 40741692 40751553 - mRNA nonsense_mediated_decay
142209 enst00000598452 sg00000077312 snrpa-204 19 40757036 40759640 + lnc_RNA retained_intron
-145754 enst00000338932 sg00000160460 ac020929.1-214 19 40467219 40576458 + mRNA protein_coding
-145972 enst00000598249 sg00000160460 ac020929.1-203 19 40467001 40576464 + mRNA protein_coding
-146732 enst00000595535 sg00000160460 ac020929.1-201 19 40466241 40560507 + mRNA protein_coding
-146732 enst00000392025 sg00000160460 ac020929.1-213 19 40466241 40576459 + mRNA protein_coding
-146732 enst00000352632 sg00000160460 ac020929.1-202 19 40466241 40576464 + mRNA protein_coding
-147209 enst00000643519 sg00000090013 blvrb-205 19 40447765 40465764 - mRNA protein_coding
-147214 enst00000643596 sg00000090013 blvrb-206 19 40447795 40465759 - mRNA nonsense_mediated_decay
-147228 enst00000263368 sg00000090013 blvrb-201 19 40447768 40465745 - mRNA protein_coding
-147228 enst00000595483 sg00000090013 blvrb-202 19 40447789 40465745 - mRNA protein_coding
-147238 enst00000597870 sg00000090013 blvrb-203 19 40447821 40465735 - mRNA nonsense_mediated_decay
148714 enst00000596860 sg00000077312 snrpa-202 19 40763541 40765208 + lnc_RNA retained_intron
-154516 enst00000601346 sg00000090013 blvrb-204 19 40447803 40458457 - lnc_RNA retained_intron
156821 enst00000597600 sg00000261857 mia-205 19 40771648 40775761 + mRNA protein_coding
156821 enst00000600729 sg00000268975 mia-rab4b-201 19 40771648 40796943 + mRNA nonsense_mediated_decay
160350 enst00000594436 sg00000261857 mia-203 19 40775177 40777490 + mRNA protein_coding
160437 enst00000597784 sg00000261857 mia-206 19 40775264 40777427 + mRNA protein_coding
160694 enst00000263369 sg00000261857 mia-201 19 40775521 40777490 + mRNA protein_coding
160720 enst00000597140 sg00000261857 mia-204 19 40775547 40777490 + mRNA protein_coding
160723 enst00000601159 sg00000261857 mia-207 19 40775550 40777490 + mRNA nonsense_mediated_decay
161967 enst00000593317 sg00000261857 mia-202 19 40776794 40777490 + lnc_RNA retained_intron
-162748 enst00000617435 sg00000277510 ac010271.3-201 19 40450225 40450480 + ncRNA misc_rna
163389 enst00000594800 sg00000167578 rab4b-203 19 40778216 40792572 + mRNA protein_coding
163415 enst00000601949 sg00000171570 rab4b-egln2-203 19 40778242 40800443 + lnc_RNA processed_transcript
163420 enst00000357052 sg00000167578 rab4b-201 19 40778247 40796942 + mRNA protein_coding
163423 enst00000602069 sg00000167578 rab4b-207 19 40778250 40786760 + lnc_RNA processed_transcript
163444 enst00000594136 sg00000171570 rab4b-egln2-201 19 40778271 40808418 + mRNA nonsense_mediated_decay
163447 enst00000600078 sg00000167578 rab4b-206 19 40778274 40783973 + lnc_RNA retained_intron
163482 enst00000378307 sg00000167578 rab4b-202 19 40778309 40796890 + mRNA nonsense_mediated_decay
163551 enst00000602173 sg00000167578 rab4b-208 19 40778378 40786978 + mRNA protein_coding
164220 enst00000597476 sg00000167578 rab4b-204 19 40779047 40796938 + lnc_RNA retained_intron
165244 enst00000596216 sg00000171570 rab4b-egln2-202 19 40780071 40800396 + lnc_RNA retained_intron
-168638 enst00000322354 sg00000167565 sertad3-201 19 40440844 40444335 - mRNA protein_coding
-168698 enst00000596456 sg00000167565 sertad3-203 19 40441806 40444275 - mRNA protein_coding
-168911 enst00000599706 sg00000167565 sertad3-204 19 40441548 40444062 - mRNA protein_coding
-169537 enst00000599050 sg00000268366 ac010271.1-201 19 40443436 40444087 + lnc_RNA lncrna
-170375 enst00000392028 sg00000167565 sertad3-202 19 40440844 40442598 - mRNA protein_coding
170706 enst00000598430 sg00000167578 rab4b-205 19 40785533 40796938 + lnc_RNA retained_intron
-171588 enst00000601217 sg00000167565 sertad3-205 19 40440847 40441385 - lnc_RNA processed_transcript
182116 enst00000595728 sg00000282951 ac008537.4-201 19 40779780 40796943 - lnc_RNA lncrna
184169 enst00000598654 sg00000269858 egln2-215 19 40798996 40800875 + mRNA protein_coding
184364 enst00000303961 sg00000269858 egln2-201 19 40799191 40808434 + mRNA protein_coding
184598 enst00000593972 sg00000269858 egln2-208 19 40799425 40800991 + mRNA protein_coding
184688 enst00000406058 sg00000269858 egln2-202 19 40799515 40808432 + mRNA protein_coding
184718 enst00000593726 sg00000269858 egln2-207 19 40799545 40808433 + mRNA protein_coding
184880 enst00000594380 sg00000269858 egln2-210 19 40799707 40800835 + mRNA protein_coding
184883 enst00000593397 sg00000269858 egln2-203 19 40799710 40800789 + mRNA protein_coding
184883 enst00000601733 sg00000269858 egln2-217 19 40799710 40800854 + mRNA protein_coding
184898 enst00000593525 sg00000269858 egln2-206 19 40799725 40800803 + mRNA protein_coding
185008 enst00000596517 sg00000269858 egln2-213 19 40799835 40800774 + mRNA protein_coding
186463 enst00000597746 sg00000269858 egln2-214 19 40801290 40807936 + mRNA protein_coding
186470 enst00000601627 sg00000268797 ac008537.1-201 19 40801297 40898282 + mRNA nonsense_mediated_decay
-186858 enst00000614440 sg00000277453 ac010271.2-201 19 40426115 40426702 + lnc_RNA lncrna
-186981 enst00000357949 sg00000197019 sertad1-201 19 40421589 40425992 - mRNA protein_coding
188313 enst00000594140 sg00000269858 egln2-209 19 40803140 40808378 + mRNA protein_coding
189246 enst00000599579 sg00000269858 egln2-216 19 40804073 40808432 + lnc_RNA retained_intron
189643 enst00000593445 sg00000269858 egln2-204 19 40804470 40808432 + lnc_RNA retained_intron
191495 enst00000593477 sg00000269858 egln2-205 19 40806322 40808432 + lnc_RNA retained_intron
192092 enst00000602166 sg00000269858 egln2-218 19 40806919 40808068 + lnc_RNA retained_intron
192315 enst00000595621 sg00000269858 egln2-212 19 40807142 40808108 + mRNA protein_coding
192416 enst00000595051 sg00000269858 egln2-211 19 40807243 40808432 + mRNA protein_coding
196270 enst00000641596 sg00000233622 cyp2t1p-202 19 40808474 40811097 - lnc_RNA processed_transcript
197273 enst00000432607 sg00000233622 cyp2t1p-201 19 40808525 40812100 - pseudogenic_transcript transcribed_unitary_pseudogene
-198231 enst00000674005 sg00000105227 prx-205 19 40393768 40414742 - mRNA protein_coding
-199595 enst00000324001 sg00000105227 prx-202 19 40393768 40413378 - mRNA protein_coding
-199609 enst00000291825 sg00000105227 prx-201 19 40393768 40413364 - mRNA protein_coding
-204730 enst00000599513 sg00000105227 prx-203 19 40407457 40408243 - lnc_RNA processed_transcript
-208685 enst00000673881 sg00000105227 prx-204 19 40393766 40404288 - mRNA protein_coding
211644 enst00000641827 sg00000237118 cyp2f2p-202 19 40818414 40826471 - lnc_RNA processed_transcript
211945 enst00000437853 sg00000237118 cyp2f2p-201 19 40818721 40826772 - pseudogenic_transcript transcribed_processed_pseudogene
222383 enst00000596135 sg00000269843 ac008537.2-201 19 40831221 40837210 - lnc_RNA lncrna
-222792 enst00000291823 sg00000160396 hipk4-201 19 40379271 40390181 - mRNA protein_coding
225332 enst00000623128 sg00000279108 ac008537.3-201 19 40840159 40842039 + unconfirmed_transcript tec
230025 enst00000599960 sg00000255974 cyp2a6-203 19 40843541 40844852 - lnc_RNA retained_intron
-235113 enst00000486134 sg00000105223 pld3-212 19 40377860 40380439 + mRNA nonsense_mediated_decay
235613 enst00000596719 sg00000255974 cyp2a6-202 19 40844922 40850440 - lnc_RNA retained_intron
235620 enst00000301141 sg00000255974 cyp2a6-201 19 40843541 40850447 - mRNA protein_coding
235620 enst00000600495 sg00000255974 cyp2a6-204 19 40846029 40850447 - mRNA nonsense_mediated_decay
-236706 enst00000488311 sg00000105223 pld3-213 19 40376267 40378127 + lnc_RNA retained_intron
-241496 enst00000475983 sg00000105223 pld3-209 19 40371477 40374814 + lnc_RNA retained_intron
-243064 enst00000480030 sg00000105223 pld3-210 19 40369909 40370892 + lnc_RNA retained_intron
-243127 enst00000617519 sg00000275652 mir6796-201 19 40369846 40369907 + miRNA mirna
-245263 enst00000599353 sg00000105223 pld3-220 19 40367710 40370228 + mRNA protein_coding
-246093 enst00000492243 sg00000105223 pld3-214 19 40366880 40371818 + mRNA nonsense_mediated_decay
-246535 enst00000485448 sg00000105223 pld3-211 19 40366438 40367844 + lnc_RNA retained_intron
-246680 enst00000464586 sg00000105223 pld3-208 19 40366293 40366644 + lnc_RNA retained_intron
-246979 enst00000359274 sg00000105223 pld3-202 19 40365994 40370011 + mRNA protein_coding
-247078 enst00000493006 sg00000105223 pld3-215 19 40365895 40367263 + lnc_RNA retained_intron
-253331 enst00000409281 sg00000105223 pld3-204 19 40359642 40378483 + mRNA protein_coding
-257131 enst00000622968 sg00000279759 ac118344.4-201 19 40355842 40360606 + unconfirmed_transcript tec
261920 enst00000602008 sg00000198077 cyp2a7-205 19 40875798 40876747 - lnc_RNA retained_intron
-264269 enst00000594908 sg00000105223 pld3-217 19 40348704 40370200 + mRNA protein_coding
-264269 enst00000596682 sg00000105223 pld3-218 19 40348704 40366915 + mRNA protein_coding
-264273 enst00000356508 sg00000105223 pld3-201 19 40348700 40378483 + mRNA protein_coding
-264273 enst00000600948 sg00000105223 pld3-223 19 40348700 40366803 + mRNA protein_coding
-264278 enst00000409735 sg00000105223 pld3-207 19 40348695 40378485 + mRNA protein_coding
-264283 enst00000602131 sg00000105223 pld3-224 19 40348690 40367809 + mRNA protein_coding
-264283 enst00000594085 sg00000105223 pld3-216 19 40348690 40366464 + lnc_RNA processed_transcript
-264288 enst00000409587 sg00000105223 pld3-206 19 40348685 40378483 + mRNA protein_coding
-264295 enst00000409419 sg00000105223 pld3-205 19 40348678 40378475 + mRNA protein_coding
-264301 enst00000598962 sg00000105223 pld3-219 19 40348672 40366666 + mRNA protein_coding
-264389 enst00000392032 sg00000105223 pld3-203 19 40348584 40367836 + mRNA protein_coding
-264446 enst00000582783 sg00000160392 c19orf47-208 19 40319536 40348527 - mRNA protein_coding
-264454 enst00000582006 sg00000160392 c19orf47-206 19 40326409 40348519 - mRNA protein_coding
-264459 enst00000580977 sg00000160392 c19orf47-205 19 40328470 40348514 - mRNA nonsense_mediated_decay
-264466 enst00000600479 sg00000105223 pld3-222 19 40348507 40366464 + lnc_RNA processed_transcript
-264517 enst00000599685 sg00000105223 pld3-221 19 40348456 40366880 + mRNA protein_coding
-264587 enst00000392035 sg00000160392 c19orf47-202 19 40321063 40348386 - mRNA protein_coding
265263 enst00000598264 sg00000198077 cyp2a7-204 19 40877075 40880090 - lnc_RNA retained_intron
267404 enst00000594332 sg00000198077 cyp2a7-203 19 40878877 40882231 - mRNA nonsense_mediated_decay
267925 enst00000291764 sg00000198077 cyp2a7-201 19 40875439 40882752 - mRNA protein_coding
267925 enst00000301146 sg00000198077 cyp2a7-202 19 40875439 40882752 - mRNA protein_coding
-269168 enst00000580606 sg00000160392 c19orf47-204 19 40328413 40343805 - mRNA protein_coding
-270644 enst00000384198 sg00000206925 ac118344.2-201 19 40342329 40342441 + ncRNA misc_rna
-271088 enst00000357884 sg00000160392 c19orf47-201 19 40321416 40341885 - mRNA nonsense_mediated_decay
-273809 enst00000384551 sg00000207281 ac118344.3-201 19 40339059 40339164 - ncRNA misc_rna
275999 enst00000252909 sg00000130612 cyp2g1p-201 19 40890826 40900508 + lnc_RNA processed_transcript
276392 enst00000597833 sg00000130612 cyp2g1p-202 19 40891219 40900155 + pseudogenic_transcript transcribed_unprocessed_pseudogene
278109 enst00000651727 sg00000130612 cyp2g1p-203 19 40892936 40912357 + lnc_RNA processed_transcript
-286550 enst00000577617 sg00000160392 c19orf47-203 19 40321063 40326423 - mRNA protein_coding
-288289 enst00000582734 sg00000160392 c19orf47-207 19 40321079 40324684 - lnc_RNA retained_intron
-290634 enst00000584868 sg00000160392 c19orf47-209 19 40321080 40322339 - mRNA protein_coding
295858 enst00000600605 sg00000198251 cyp2a7p2-201 19 40908480 40910685 - pseudogenic_transcript unprocessed_pseudogene
309392 enst00000593298 sg00000256612 cyp2b7p-202 19 40924219 40939517 + lnc_RNA retained_intron
309392 enst00000599831 sg00000256612 cyp2b7p-204 19 40924219 40941868 + lnc_RNA retained_intron
309392 enst00000599198 sg00000256612 cyp2b7p-203 19 40924219 40950660 + lnc_RNA processed_transcript
309446 enst00000541697 sg00000256612 cyp2b7p-201 19 40924273 40949234 + pseudogenic_transcript transcribed_unprocessed_pseudogene
-313389 enst00000383947 sg00000206674 rnu6-945p-201 19 40299478 40299584 - snRNA snrna
326596 enst00000602646 sg00000256612 cyp2b7p-206 19 40941423 40944988 + lnc_RNA processed_transcript
-327437 enst00000578123 sg00000105221 akt2-229 19 40242584 40285536 - mRNA protein_coding
-327578 enst00000424901 sg00000105221 akt2-210 19 40230318 40285395 - mRNA protein_coding
-327600 enst00000391844 sg00000105221 akt2-203 19 40233670 40285373 - mRNA nonsense_mediated_decay
-327628 enst00000392038 sg00000105221 akt2-206 19 40230317 40285345 - mRNA protein_coding
-327631 enst00000584288 sg00000105221 akt2-240 19 40233821 40285342 - mRNA nonsense_mediated_decay
-327631 enst00000579047 sg00000105221 akt2-234 19 40234498 40285342 - mRNA protein_coding
-327708 enst00000358335 sg00000105221 akt2-202 19 40242628 40285265 - mRNA protein_coding
-327881 enst00000596634 sg00000105221 akt2-241 19 40242056 40285092 - mRNA protein_coding
-328019 enst00000452077 sg00000105221 akt2-213 19 40242573 40284954 - mRNA protein_coding
-328022 enst00000456441 sg00000105221 akt2-214 19 40242653 40284951 - mRNA protein_coding
-328024 enst00000583859 sg00000105221 akt2-239 19 40242677 40284949 - mRNA protein_coding
-328151 enst00000423127 sg00000105221 akt2-209 19 40242616 40284822 - mRNA protein_coding
329316 enst00000600518 sg00000256612 cyp2b7p-205 19 40944143 40949345 + lnc_RNA retained_intron
-329808 enst00000581582 sg00000105221 akt2-238 19 40282248 40283165 - lnc_RNA processed_transcript
-330332 enst00000384899 sg00000207631 mir641-201 19 40282543 40282641 - miRNA mirna
331520 enst00000597260 sg00000269353 ac092071.1-201 19 40946347 40947450 + lnc_RNA lncrna
-332141 enst00000486368 sg00000105221 akt2-219 19 40242040 40280832 - mRNA protein_coding
-332557 enst00000672890 sg00000105221 akt2-244 19 40242590 40280416 - mRNA protein_coding
-332735 enst00000487537 sg00000105221 akt2-221 19 40240947 40280238 - lnc_RNA retained_intron
-333334 enst00000416994 sg00000105221 akt2-208 19 40255158 40279639 - mRNA protein_coding
-333643 enst00000537834 sg00000105221 akt2-228 19 40239590 40279330 - lnc_RNA retained_intron
-333749 enst00000498350 sg00000105221 akt2-227 19 40268642 40279224 - lnc_RNA processed_transcript
-337494 enst00000378432 sg00000205041 ac118344.1-201 19 40273489 40275479 - lnc_RNA lncrna
-342204 enst00000416362 sg00000105221 akt2-207 19 40242577 40270769 - mRNA protein_coding
-343384 enst00000427375 sg00000105221 akt2-211 19 40255244 40269589 - mRNA protein_coding
-345399 enst00000672879 sg00000105221 akt2-243 19 40242035 40267574 - lnc_RNA processed_transcript
-346614 enst00000580747 sg00000105221 akt2-236 19 40255158 40266359 - mRNA protein_coding
-346625 enst00000441941 sg00000105221 akt2-212 19 40241959 40266348 - mRNA protein_coding
-346656 enst00000492463 sg00000105221 akt2-224 19 40238942 40266317 - mRNA nonsense_mediated_decay
-347426 enst00000392037 sg00000105221 akt2-205 19 40242574 40265547 - mRNA protein_coding
-347661 enst00000311278 sg00000105221 akt2-201 19 40233841 40265312 - mRNA protein_coding
-355928 enst00000578615 sg00000105221 akt2-232 19 40235102 40257045 - mRNA protein_coding
-356010 enst00000491778 sg00000105221 akt2-223 19 40240070 40256963 - mRNA nonsense_mediated_decay
-357796 enst00000601166 sg00000105221 akt2-242 19 40237990 40255177 - mRNA nonsense_mediated_decay
-368846 enst00000578975 sg00000105221 akt2-233 19 40240791 40244127 - lnc_RNA retained_intron
-369671 enst00000476266 sg00000105221 akt2-216 19 40232337 40243302 - lnc_RNA retained_intron
-370962 enst00000578310 sg00000105221 akt2-231 19 40236302 40242011 - mRNA protein_coding
-372674 enst00000391845 sg00000105221 akt2-204 19 40235894 40240299 - lnc_RNA processed_transcript
-372863 enst00000480878 sg00000105221 akt2-217 19 40236024 40240110 - lnc_RNA processed_transcript
-373473 enst00000483166 sg00000105221 akt2-218 19 40232335 40239500 - lnc_RNA retained_intron
-373704 enst00000580878 sg00000105221 akt2-237 19 40236032 40239269 - lnc_RNA retained_intron
-373841 enst00000579345 sg00000105221 akt2-235 19 40236024 40239132 - lnc_RNA retained_intron
-373968 enst00000578282 sg00000105221 akt2-230 19 40236024 40239005 - lnc_RNA retained_intron
-374907 enst00000496089 sg00000105221 akt2-225 19 40233755 40238066 - lnc_RNA retained_intron
-375666 enst00000486647 sg00000105221 akt2-220 19 40236024 40237307 - lnc_RNA processed_transcript
376455 enst00000324071 sg00000197408 cyp2b6-201 19 40991282 41018398 + mRNA protein_coding
376577 enst00000598834 sg00000197408 cyp2b6-205 19 40991404 41017016 + mRNA nonsense_mediated_decay
-376902 enst00000476247 sg00000105221 akt2-215 19 40233781 40236071 - mRNA protein_coding
-376942 enst00000489375 sg00000105221 akt2-222 19 40233668 40236031 - mRNA nonsense_mediated_decay
-377015 enst00000497948 sg00000105221 akt2-226 19 40233879 40235958 - mRNA protein_coding
-386276 enst00000599263 sg00000105219 cntd2-205 19 40222208 40226697 - mRNA protein_coding
-386284 enst00000430325 sg00000105219 cntd2-202 19 40222208 40226689 - mRNA protein_coding
-386316 enst00000221818 sg00000105219 cntd2-201 19 40222215 40226657 - mRNA nonsense_mediated_decay
-388036 enst00000513948 sg00000105219 cntd2-203 19 40223048 40224937 - mRNA protein_coding
389119 enst00000593831 sg00000197408 cyp2b6-202 19 41003946 41017373 + mRNA protein_coding
-389409 enst00000593335 sg00000105219 cntd2-204 19 40222214 40223564 - lnc_RNA retained_intron
389552 enst00000594187 sg00000197408 cyp2b6-203 19 41004379 41007175 + lnc_RNA retained_intron
-394574 enst00000311308 sg00000174521 ttc9b-201 19 40216058 40218399 - mRNA protein_coding
-394591 enst00000593586 sg00000174521 ttc9b-202 19 40216060 40218382 - lnc_RNA retained_intron
394850 enst00000597612 sg00000197408 cyp2b6-204 19 41009677 41017847 + lnc_RNA retained_intron
-403821 enst00000594791 sg00000130758 map3k10-205 19 40209152 40213734 + lnc_RNA retained_intron
-407443 enst00000594569 sg00000130758 map3k10-204 19 40205530 40206402 + lnc_RNA retained_intron
-408372 enst00000601702 sg00000130758 map3k10-208 19 40204601 40206001 + lnc_RNA retained_intron
412893 enst00000595391 sg00000213908 cyp2a7p1-201 19 41024268 41027720 - pseudogenic_transcript unprocessed_pseudogene
-414530 enst00000597986 sg00000130758 map3k10-207 19 40198443 40215528 + mRNA nonsense_mediated_decay
-414549 enst00000593502 sg00000130758 map3k10-202 19 40198424 40213261 + mRNA nonsense_mediated_decay
-414576 enst00000594951 sg00000130758 map3k10-206 19 40198397 40209202 + mRNA nonsense_mediated_decay
-420728 enst00000593906 sg00000130758 map3k10-203 19 40192245 40204616 + lnc_RNA processed_transcript
-421547 enst00000253055 sg00000130758 map3k10-201 19 40191426 40215575 + mRNA protein_coding
447617 enst00000594920 sg00000268101 cyp2g2p-201 19 41050449 41062444 - pseudogenic_transcript unprocessed_pseudogene
459280 enst00000605729 sg00000271299 ac008962.1-201 19 41073804 41074107 - pseudogenic_transcript processed_pseudogene
473624 enst00000330436 sg00000197838 cyp2a13-201 19 41088451 41096195 + mRNA protein_coding
-490805 enst00000446052 sg00000230086 vn1r96p-201 19 40121311 40122168 - pseudogenic_transcript unitary_pseudogene
499605 enst00000526093 sg00000197446 cyp2f1-203 19 41114432 41123350 + lnc_RNA retained_intron
499605 enst00000531409 sg00000197446 cyp2f1-204 19 41114432 41125817 + lnc_RNA retained_intron
499605 enst00000532164 sg00000197446 cyp2f1-205 19 41114432 41128254 + mRNA nonsense_mediated_decay
499605 enst00000331105 sg00000197446 cyp2f1-201 19 41114432 41128381 + mRNA protein_coding

Source file: /hps/research1/birney/users/adrien/analyses/cancer_DNA_promethion/run_1_2_3_4/DNA_pipeline_2/results/methylation/pycometh_meth_comp_CGI_3/out.tsv.gz

MD5 hash: 9aa0e3f69cb4e12345c3758eb68a5efc