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CpG interval report generated on 20/05/20 with pycoMeth 0.4.6
Interval details
| pvalue rank | chromosome | start | end | length | number of samples | number of CpGs | pvalue | adjusted pvalue |
|---|---|---|---|---|---|---|---|---|
| #20 | 19 | 44756986 | 44758607 | 1621 | 3 | 60 | 8.96271e-27 | 4.24449e-24 |
Methylation log-likelihood ratio by CpG position
Distribution of CpG methylation log-likelihood ratio by sample
Closest transcripts TSS
| distance to tss | transcript id | gene id | transcript name | chromosome | start | end | strand | feature type | transcript biotype |
|---|---|---|---|---|---|---|---|---|---|
| 0 | enst00000474300 | sg00000069399 | bcl3-207 | 19 | 44757589 | 44759825 | + | lnc_RNA | retained_intron |
| 0 | enst00000477832 | sg00000069399 | bcl3-208 | 19 | 44757657 | 44758563 | + | lnc_RNA | retained_intron |
| 0 | enst00000473473 | sg00000069399 | bcl3-206 | 19 | 44758528 | 44759558 | + | lnc_RNA | retained_intron |
| 50 | enst00000612079 | sg00000284258 | mir8085-201 | 19 | 44758657 | 44758721 | + | miRNA | mirna |
| -841 | enst00000464319 | sg00000069399 | bcl3-204 | 19 | 44756145 | 44757364 | + | lnc_RNA | retained_intron |
| -1837 | enst00000473468 | sg00000069399 | bcl3-205 | 19 | 44755149 | 44757168 | + | lnc_RNA | processed_transcript |
| -5665 | enst00000444487 | sg00000069399 | bcl3-203 | 19 | 44751321 | 44759463 | + | mRNA | protein_coding |
| 6343 | enst00000517218 | sg00000253027 | ac092066.2-201 | 19 | 44764950 | 44765100 | + | snoRNA | snorna |
| 6541 | enst00000425131 | sg00000236807 | ac092066.1-201 | 19 | 44765148 | 44765464 | + | pseudogenic_transcript | processed_pseudogene |
| -8278 | enst00000164227 | sg00000069399 | bcl3-201 | 19 | 44748708 | 44760044 | + | mRNA | protein_coding |
| -9150 | enst00000487394 | sg00000069399 | bcl3-209 | 19 | 44747836 | 44749004 | + | lnc_RNA | processed_transcript |
| -9281 | enst00000403534 | sg00000069399 | bcl3-202 | 19 | 44747705 | 44759486 | + | lnc_RNA | retained_intron |
| 19262 | enst00000341505 | sg00000142273 | cblc-201 | 19 | 44777869 | 44800634 | + | mRNA | protein_coding |
| 19283 | enst00000647358 | sg00000142273 | cblc-203 | 19 | 44777890 | 44800652 | + | mRNA | protein_coding |
| 22319 | enst00000647063 | sg00000142273 | cblc-202 | 19 | 44780926 | 44792426 | + | mRNA | nonsense_mediated_decay |
| -30928 | enst00000516391 | sg00000252200 | ac243964.2-201 | 19 | 44725984 | 44726058 | - | snoRNA | snorna |
| -31769 | enst00000662585 | sg00000266903 | ac243964.3-201 | 19 | 44631573 | 44725217 | - | lnc_RNA | lncrna |
| -31799 | enst00000657348 | sg00000266903 | ac243964.3-203 | 19 | 44715559 | 44725187 | - | lnc_RNA | lncrna |
| -38227 | enst00000586169 | sg00000266903 | ac243964.3-205 | 19 | 44716108 | 44718759 | - | lnc_RNA | lncrna |
| -38301 | enst00000591312 | sg00000266903 | ac243964.3-204 | 19 | 44715564 | 44718685 | - | lnc_RNA | lncrna |
| -38355 | enst00000590796 | sg00000266903 | ac243964.3-202 | 19 | 44632199 | 44718631 | - | lnc_RNA | lncrna |
| 45094 | enst00000644659 | sg00000285128 | ac092306.1-201 | 19 | 44803701 | 44804010 | + | lnc_RNA | lncrna |
| 50464 | enst00000611077 | sg00000187244 | bcam-209 | 19 | 44809071 | 44821416 | + | mRNA | protein_coding |
| 50496 | enst00000270233 | sg00000187244 | bcam-201 | 19 | 44809103 | 44821421 | + | mRNA | protein_coding |
| 50508 | enst00000588303 | sg00000187244 | bcam-202 | 19 | 44809115 | 44812046 | + | lnc_RNA | retained_intron |
| 50514 | enst00000591520 | sg00000187244 | bcam-208 | 19 | 44809121 | 44814288 | + | mRNA | protein_coding |
| 50523 | enst00000588603 | sg00000187244 | bcam-203 | 19 | 44809130 | 44812953 | + | lnc_RNA | retained_intron |
| 54541 | enst00000590108 | sg00000187244 | bcam-206 | 19 | 44813148 | 44813667 | + | lnc_RNA | retained_intron |
| 54831 | enst00000590196 | sg00000187244 | bcam-207 | 19 | 44813438 | 44818802 | + | mRNA | nonsense_mediated_decay |
| -55626 | enst00000405314 | sg00000213892 | ceacam16-201 | 19 | 44701360 | 44710714 | + | mRNA | protein_coding |
| -57835 | enst00000587331 | sg00000213892 | ceacam16-202 | 19 | 44699151 | 44710718 | + | mRNA | protein_coding |
| 59924 | enst00000589558 | sg00000187244 | bcam-205 | 19 | 44818531 | 44819244 | + | lnc_RNA | retained_intron |
| 60640 | enst00000588714 | sg00000187244 | bcam-204 | 19 | 44819247 | 44820060 | + | lnc_RNA | retained_intron |
| -79401 | enst00000459648 | sg00000186567 | ceacam19-203 | 19 | 44677585 | 44684359 | + | lnc_RNA | retained_intron |
| -84508 | enst00000480278 | sg00000186567 | ceacam19-204 | 19 | 44672478 | 44684355 | + | lnc_RNA | processed_transcript |
| -85264 | enst00000403660 | sg00000186567 | ceacam19-202 | 19 | 44671722 | 44684359 | + | mRNA | protein_coding |
| -85534 | enst00000358777 | sg00000186567 | ceacam19-201 | 19 | 44671452 | 44684355 | + | mRNA | protein_coding |
| 87568 | enst00000252485 | sg00000130202 | nectin2-202 | 19 | 44846175 | 44878941 | + | mRNA | protein_coding |
| 87690 | enst00000252483 | sg00000130202 | nectin2-201 | 19 | 44846297 | 44889223 | + | mRNA | protein_coding |
| -92855 | enst00000623022 | sg00000279095 | ac243964.4-201 | 19 | 44664131 | 44666158 | + | unconfirmed_transcript | tec |
| -94708 | enst00000622237 | sg00000186567 | ceacam19-209 | 19 | 44662278 | 44672704 | + | mRNA | protein_coding |
| -94708 | enst00000591979 | sg00000186567 | ceacam19-205 | 19 | 44662278 | 44672708 | + | mRNA | protein_coding |
| -94708 | enst00000592789 | sg00000186567 | ceacam19-206 | 19 | 44662278 | 44672708 | + | mRNA | protein_coding |
| -94708 | enst00000618372 | sg00000186567 | ceacam19-207 | 19 | 44662278 | 44672708 | + | mRNA | protein_coding |
| -94708 | enst00000619799 | sg00000186567 | ceacam19-208 | 19 | 44662278 | 44672708 | + | mRNA | protein_coding |
| -103254 | enst00000636960 | sg00000283673 | mir4531-201 | 19 | 44653686 | 44653732 | - | miRNA | mirna |
| -106945 | enst00000587785 | sg00000073008 | pvr-206 | 19 | 44650041 | 44661880 | + | mRNA | protein_coding |
| -112889 | enst00000406449 | sg00000073008 | pvr-204 | 19 | 44644097 | 44659094 | + | mRNA | protein_coding |
| -113072 | enst00000187830 | sg00000073008 | pvr-201 | 19 | 44643914 | 44663583 | + | mRNA | nonsense_mediated_decay |
| -113076 | enst00000425690 | sg00000073008 | pvr-205 | 19 | 44643910 | 44666162 | + | mRNA | protein_coding |
| -113076 | enst00000403059 | sg00000073008 | pvr-203 | 19 | 44643910 | 44663583 | + | mRNA | protein_coding |
| -113188 | enst00000344956 | sg00000073008 | pvr-202 | 19 | 44643798 | 44663583 | + | mRNA | protein_coding |
| 113246 | enst00000591581 | sg00000130202 | nectin2-205 | 19 | 44871853 | 44878938 | + | mRNA | protein_coding |
| 115335 | enst00000587386 | sg00000130202 | nectin2-204 | 19 | 44873942 | 44874689 | + | lnc_RNA | retained_intron |
| 115772 | enst00000585601 | sg00000130202 | nectin2-203 | 19 | 44874379 | 44878938 | + | mRNA | protein_coding |
| 123731 | enst00000592018 | sg00000130202 | nectin2-206 | 19 | 44882338 | 44888894 | + | mRNA | protein_coding |
| 131962 | enst00000589253 | sg00000130204 | tomm40-204 | 19 | 44890569 | 44891525 | + | mRNA | protein_coding |
| 132269 | enst00000585408 | sg00000267282 | ac011481.2-201 | 19 | 44882027 | 44890876 | - | lnc_RNA | lncrna |
| 132613 | enst00000405636 | sg00000130204 | tomm40-202 | 19 | 44891220 | 44903688 | + | mRNA | protein_coding |
| 132613 | enst00000252487 | sg00000130204 | tomm40-201 | 19 | 44891220 | 44903689 | + | mRNA | protein_coding |
| 132624 | enst00000592434 | sg00000130204 | tomm40-207 | 19 | 44891231 | 44903686 | + | mRNA | protein_coding |
| 132630 | enst00000589649 | sg00000130204 | tomm40-205 | 19 | 44891237 | 44894067 | + | mRNA | protein_coding |
| 132647 | enst00000426677 | sg00000130204 | tomm40-203 | 19 | 44891254 | 44903689 | + | mRNA | protein_coding |
| -133240 | enst00000441389 | sg00000216588 | igsf23-203 | 19 | 44623746 | 44635492 | + | mRNA | protein_coding |
| 135222 | enst00000592041 | sg00000130204 | tomm40-206 | 19 | 44893829 | 44903132 | + | mRNA | nonsense_mediated_decay |
| -136165 | enst00000455455 | sg00000230666 | ceacam22p-203 | 19 | 44547313 | 44620821 | - | lnc_RNA | processed_transcript |
| -143056 | enst00000428245 | sg00000216588 | igsf23-202 | 19 | 44613930 | 44636454 | + | mRNA | protein_coding |
| -143204 | enst00000592507 | sg00000216588 | igsf23-204 | 19 | 44613782 | 44623777 | + | mRNA | protein_coding |
| -143423 | enst00000402988 | sg00000216588 | igsf23-201 | 19 | 44613563 | 44636781 | + | mRNA | protein_coding |
| 147184 | enst00000446996 | sg00000130203 | apoe-204 | 19 | 44905791 | 44908944 | + | mRNA | protein_coding |
| 147189 | enst00000252486 | sg00000130203 | apoe-201 | 19 | 44905796 | 44909393 | + | mRNA | protein_coding |
| 147189 | enst00000485628 | sg00000130203 | apoe-205 | 19 | 44905796 | 44907326 | + | lnc_RNA | retained_intron |
| 147205 | enst00000434152 | sg00000130203 | apoe-203 | 19 | 44905812 | 44909025 | + | mRNA | protein_coding |
| 147753 | enst00000425718 | sg00000130203 | apoe-202 | 19 | 44906360 | 44908954 | + | mRNA | protein_coding |
| 150768 | enst00000623895 | sg00000280087 | ac011481.3-201 | 19 | 44909375 | 44914968 | + | unconfirmed_transcript | tec |
| 155640 | enst00000588750 | sg00000130208 | apoc1-202 | 19 | 44914247 | 44919342 | + | mRNA | protein_coding |
| 155718 | enst00000588802 | sg00000130208 | apoc1-203 | 19 | 44914325 | 44919346 | + | mRNA | protein_coding |
| 155948 | enst00000592535 | sg00000130208 | apoc1-208 | 19 | 44914555 | 44919209 | + | mRNA | protein_coding |
| 156096 | enst00000592885 | sg00000130208 | apoc1-209 | 19 | 44914703 | 44919344 | + | mRNA | protein_coding |
| 156103 | enst00000589781 | sg00000130208 | apoc1-205 | 19 | 44914710 | 44919343 | + | mRNA | protein_coding |
| 156233 | enst00000589078 | sg00000130208 | apoc1-204 | 19 | 44914840 | 44916292 | + | mRNA | protein_coding |
| 156262 | enst00000590334 | sg00000130208 | apoc1-206 | 19 | 44914869 | 44919342 | + | mRNA | nonsense_mediated_decay |
| 156262 | enst00000592176 | sg00000130208 | apoc1-207 | 19 | 44914869 | 44919349 | + | mRNA | nonsense_mediated_decay |
| 156262 | enst00000586638 | sg00000130208 | apoc1-201 | 19 | 44914869 | 44919346 | + | mRNA | protein_coding |
| 168197 | enst00000507983 | sg00000214855 | apoc1p1-201 | 19 | 44926804 | 44931386 | + | lnc_RNA | processed_transcript |
| 168197 | enst00000575148 | sg00000214855 | apoc1p1-204 | 19 | 44926804 | 44931193 | + | lnc_RNA | processed_transcript |
| 168213 | enst00000589081 | sg00000214855 | apoc1p1-205 | 19 | 44926820 | 44931190 | + | lnc_RNA | processed_transcript |
| 168346 | enst00000574565 | sg00000214855 | apoc1p1-203 | 19 | 44926953 | 44931328 | + | lnc_RNA | processed_transcript |
| 168369 | enst00000571466 | sg00000214855 | apoc1p1-202 | 19 | 44926976 | 44931058 | + | pseudogenic_transcript | transcribed_unprocessed_pseudogene |
| 183630 | enst00000592954 | sg00000267467 | apoc4-202 | 19 | 44942237 | 44945496 | + | mRNA | protein_coding |
| 183631 | enst00000585685 | sg00000224916 | apoc4-apoc2-201 | 19 | 44942238 | 44949565 | + | mRNA | nonsense_mediated_decay |
| 183649 | enst00000589057 | sg00000224916 | apoc4-apoc2-202 | 19 | 44942256 | 44949370 | + | mRNA | protein_coding |
| 183667 | enst00000591600 | sg00000267467 | apoc4-201 | 19 | 44942274 | 44945016 | + | mRNA | protein_coding |
| -186422 | enst00000441814 | sg00000224366 | ac243964.1-201 | 19 | 44570304 | 44570564 | - | pseudogenic_transcript | unprocessed_pseudogene |
| 187364 | enst00000252490 | sg00000234906 | apoc2-201 | 19 | 44945971 | 44949566 | + | mRNA | protein_coding |
| 187428 | enst00000592257 | sg00000234906 | apoc2-205 | 19 | 44946035 | 44949395 | + | mRNA | protein_coding |
| 187449 | enst00000591597 | sg00000234906 | apoc2-204 | 19 | 44946056 | 44949399 | + | mRNA | protein_coding |
| 188596 | enst00000590360 | sg00000234906 | apoc2-203 | 19 | 44947203 | 44949565 | + | mRNA | protein_coding |
| 189679 | enst00000585786 | sg00000234906 | apoc2-202 | 19 | 44948286 | 44949332 | + | mRNA | protein_coding |
| 195400 | enst00000591646 | sg00000267114 | ac011481.1-201 | 19 | 44950044 | 44954007 | - | lnc_RNA | lncrna |
| 195978 | enst00000588855 | sg00000104853 | clptm1-209 | 19 | 44954585 | 44987862 | + | lnc_RNA | retained_intron |
| 195984 | enst00000546079 | sg00000104853 | clptm1-203 | 19 | 44954591 | 44993190 | + | mRNA | protein_coding |
| 195984 | enst00000541297 | sg00000104853 | clptm1-202 | 19 | 44954591 | 44993196 | + | mRNA | protein_coding |
| 196773 | enst00000337392 | sg00000104853 | clptm1-201 | 19 | 44955380 | 44993341 | + | mRNA | protein_coding |
| 196774 | enst00000591304 | sg00000104853 | clptm1-212 | 19 | 44955381 | 44985303 | + | mRNA | protein_coding |
| 196951 | enst00000585961 | sg00000104853 | clptm1-204 | 19 | 44955558 | 44974490 | + | mRNA | protein_coding |
| -200069 | enst00000446628 | sg00000230666 | ceacam22p-201 | 19 | 44537058 | 44556917 | - | lnc_RNA | processed_transcript |
| -207820 | enst00000455058 | sg00000230666 | ceacam22p-202 | 19 | 44542798 | 44549166 | - | pseudogenic_transcript | transcribed_unprocessed_pseudogene |
| 215940 | enst00000587537 | sg00000104853 | clptm1-207 | 19 | 44974547 | 44986936 | + | lnc_RNA | retained_intron |
| -220373 | enst00000588710 | sg00000267614 | ac245748.3-201 | 19 | 44536263 | 44536613 | - | lnc_RNA | lncrna |
| 225680 | enst00000589158 | sg00000104853 | clptm1-210 | 19 | 44984287 | 44987390 | + | lnc_RNA | processed_transcript |
| -227198 | enst00000621342 | sg00000273777 | ceacam20-206 | 19 | 44501677 | 44529788 | - | mRNA | protein_coding |
| -227198 | enst00000617951 | sg00000273777 | ceacam20-204 | 19 | 44511010 | 44529788 | - | mRNA | protein_coding |
| -227311 | enst00000614924 | sg00000273777 | ceacam20-203 | 19 | 44506159 | 44529675 | - | mRNA | protein_coding |
| -227461 | enst00000614577 | sg00000273777 | ceacam20-202 | 19 | 44506159 | 44529525 | - | mRNA | protein_coding |
| -227461 | enst00000620096 | sg00000273777 | ceacam20-205 | 19 | 44506159 | 44529525 | - | mRNA | protein_coding |
| -227461 | enst00000611497 | sg00000273777 | ceacam20-201 | 19 | 44506159 | 44529525 | - | mRNA | protein_coding |
| 228297 | enst00000588274 | sg00000104853 | clptm1-208 | 19 | 44986904 | 44990585 | + | lnc_RNA | retained_intron |
| 228754 | enst00000589347 | sg00000104853 | clptm1-211 | 19 | 44987361 | 44992636 | + | mRNA | nonsense_mediated_decay |
| 231377 | enst00000586975 | sg00000104853 | clptm1-206 | 19 | 44989984 | 44991259 | + | lnc_RNA | retained_intron |
| 233661 | enst00000586915 | sg00000104853 | clptm1-205 | 19 | 44992268 | 44993194 | + | mRNA | protein_coding |
| 242842 | enst00000625761 | sg00000104856 | relb-207 | 19 | 45001449 | 45038198 | + | mRNA | protein_coding |
| 242854 | enst00000509480 | sg00000104856 | relb-204 | 19 | 45001461 | 45012229 | + | mRNA | nonsense_mediated_decay |
| 242854 | enst00000505236 | sg00000104856 | relb-202 | 19 | 45001461 | 45038159 | + | mRNA | protein_coding |
| 242857 | enst00000221452 | sg00000104856 | relb-201 | 19 | 45001464 | 45038192 | + | mRNA | protein_coding |
| -256462 | enst00000590088 | sg00000167384 | znf180-206 | 19 | 44475639 | 44500524 | - | mRNA | nonsense_mediated_decay |
| -256463 | enst00000590366 | sg00000167384 | znf180-207 | 19 | 44496548 | 44500523 | - | lnc_RNA | processed_transcript |
| -256463 | enst00000592529 | sg00000167384 | znf180-211 | 19 | 44475644 | 44500523 | - | mRNA | protein_coding |
| -256464 | enst00000585514 | sg00000167384 | znf180-203 | 19 | 44479410 | 44500522 | - | lnc_RNA | processed_transcript |
| -256464 | enst00000221327 | sg00000167384 | znf180-201 | 19 | 44474428 | 44500522 | - | mRNA | protein_coding |
| -256464 | enst00000591064 | sg00000167384 | znf180-208 | 19 | 44477849 | 44500522 | - | mRNA | protein_coding |
| -256464 | enst00000586637 | sg00000167384 | znf180-204 | 19 | 44477790 | 44500522 | - | lnc_RNA | processed_transcript |
| -256466 | enst00000391956 | sg00000167384 | znf180-202 | 19 | 44475637 | 44500520 | - | mRNA | protein_coding |
| -256467 | enst00000592140 | sg00000167384 | znf180-210 | 19 | 44496548 | 44500519 | - | lnc_RNA | processed_transcript |
| -256476 | enst00000587047 | sg00000167384 | znf180-205 | 19 | 44478104 | 44500510 | - | mRNA | protein_coding |
| -256491 | enst00000592095 | sg00000167384 | znf180-209 | 19 | 44475639 | 44500495 | - | mRNA | nonsense_mediated_decay |
| 263223 | enst00000510184 | sg00000104856 | relb-205 | 19 | 45021830 | 45025678 | + | lnc_RNA | retained_intron |
| 273817 | enst00000509229 | sg00000104856 | relb-203 | 19 | 45032424 | 45037568 | + | lnc_RNA | retained_intron |
| 274101 | enst00000589972 | sg00000104856 | relb-206 | 19 | 45032708 | 45038122 | + | mRNA | protein_coding |
| 280438 | enst00000221455 | sg00000104859 | clasrp-201 | 19 | 45039045 | 45070956 | + | mRNA | protein_coding |
| 280439 | enst00000391953 | sg00000104859 | clasrp-203 | 19 | 45039046 | 45070855 | + | mRNA | protein_coding |
| 280443 | enst00000592056 | sg00000104859 | clasrp-215 | 19 | 45039050 | 45053087 | + | lnc_RNA | retained_intron |
| 280443 | enst00000591410 | sg00000104859 | clasrp-213 | 19 | 45039050 | 45060442 | + | mRNA | nonsense_mediated_decay |
| 280458 | enst00000391952 | sg00000104859 | clasrp-202 | 19 | 45039065 | 45070956 | + | mRNA | nonsense_mediated_decay |
| 280467 | enst00000588247 | sg00000104859 | clasrp-211 | 19 | 45039074 | 45040747 | + | lnc_RNA | retained_intron |
| 280467 | enst00000588936 | sg00000104859 | clasrp-212 | 19 | 45039074 | 45052853 | + | mRNA | protein_coding |
| 280914 | enst00000544944 | sg00000104859 | clasrp-204 | 19 | 45039521 | 45070954 | + | mRNA | protein_coding |
| 281663 | enst00000587112 | sg00000104859 | clasrp-207 | 19 | 45040270 | 45064046 | + | mRNA | nonsense_mediated_decay |
| 288851 | enst00000384276 | sg00000207003 | rnu6-611p-201 | 19 | 45047458 | 45047561 | + | snRNA | snrna |
| -289345 | enst00000561698 | sg00000176761 | znf285b-201 | 19 | 44467641 | 44473227 | + | pseudogenic_transcript | unprocessed_pseudogene |
| 294193 | enst00000588016 | sg00000104859 | clasrp-209 | 19 | 45052800 | 45058253 | + | lnc_RNA | retained_intron |
| -308408 | enst00000613197 | sg00000278318 | znf229-203 | 19 | 44426251 | 44448578 | - | mRNA | protein_coding |
| -308514 | enst00000591289 | sg00000278318 | znf229-201 | 19 | 44417519 | 44448472 | - | lnc_RNA | processed_transcript |
| -308514 | enst00000614049 | sg00000278318 | znf229-204 | 19 | 44426254 | 44448472 | - | mRNA | protein_coding |
| -308525 | enst00000592308 | sg00000278318 | znf229-202 | 19 | 44432339 | 44448461 | - | mRNA | protein_coding |
| -308534 | enst00000588655 | sg00000267188 | ac245748.2-201 | 19 | 44392439 | 44448452 | - | lnc_RNA | lncrna |
| -308540 | enst00000620012 | sg00000278318 | znf229-205 | 19 | 44426255 | 44448446 | - | mRNA | nonsense_mediated_decay |
| 308864 | enst00000585432 | sg00000104859 | clasrp-205 | 19 | 45067471 | 45068180 | + | lnc_RNA | retained_intron |
| 309595 | enst00000585615 | sg00000104859 | clasrp-206 | 19 | 45068202 | 45070942 | + | lnc_RNA | retained_intron |
| 309813 | enst00000591904 | sg00000104859 | clasrp-214 | 19 | 45068420 | 45070955 | + | mRNA | protein_coding |
| 310476 | enst00000587472 | sg00000104859 | clasrp-208 | 19 | 45069083 | 45070873 | + | lnc_RNA | retained_intron |
| 311039 | enst00000592876 | sg00000104859 | clasrp-216 | 19 | 45069646 | 45070828 | + | lnc_RNA | retained_intron |
| 311232 | enst00000588070 | sg00000104859 | clasrp-210 | 19 | 45069839 | 45070956 | + | lnc_RNA | retained_intron |
| 317871 | enst00000303809 | sg00000170684 | znf296-201 | 19 | 45071500 | 45076478 | - | mRNA | protein_coding |
| 317980 | enst00000622376 | sg00000170684 | znf296-202 | 19 | 45071501 | 45076587 | - | mRNA | protein_coding |
| 320588 | enst00000591607 | sg00000142252 | gemin7-203 | 19 | 45079195 | 45090869 | + | mRNA | protein_coding |
| 320651 | enst00000591747 | sg00000142252 | gemin7-204 | 19 | 45079258 | 45090537 | + | mRNA | protein_coding |
| 320653 | enst00000270257 | sg00000142252 | gemin7-201 | 19 | 45079260 | 45091518 | + | mRNA | protein_coding |
| 320656 | enst00000592351 | sg00000142252 | gemin7-205 | 19 | 45079263 | 45088699 | + | lnc_RNA | processed_transcript |
| 320662 | enst00000391951 | sg00000142252 | gemin7-202 | 19 | 45079269 | 45090713 | + | mRNA | protein_coding |
| 320681 | enst00000587566 | sg00000007047 | mark4-203 | 19 | 45079288 | 45266246 | + | mRNA | protein_coding |
| 331767 | enst00000586556 | sg00000267348 | gemin7-as1-201 | 19 | 45085329 | 45090374 | - | lnc_RNA | lncrna |
| 331784 | enst00000586744 | sg00000267348 | gemin7-as1-202 | 19 | 45076510 | 45090391 | - | lnc_RNA | lncrna |
| 332789 | enst00000593240 | sg00000104866 | ppp1r37-209 | 19 | 45091396 | 45093156 | + | lnc_RNA | processed_transcript |
| 332916 | enst00000655031 | sg00000267348 | gemin7-as1-203 | 19 | 45085086 | 45091523 | - | lnc_RNA | lncrna |
| 333185 | enst00000542809 | sg00000104866 | ppp1r37-205 | 19 | 45091792 | 45093271 | + | lnc_RNA | processed_transcript |
| 334028 | enst00000658996 | sg00000267348 | gemin7-as1-204 | 19 | 45085347 | 45092635 | - | lnc_RNA | lncrna |
| 334567 | enst00000544069 | sg00000104866 | ppp1r37-206 | 19 | 45093174 | 45142197 | + | mRNA | protein_coding |
| 334572 | enst00000221462 | sg00000104866 | ppp1r37-201 | 19 | 45093179 | 45147285 | + | mRNA | protein_coding |
| 334598 | enst00000496125 | sg00000104866 | ppp1r37-203 | 19 | 45093205 | 45108918 | + | lnc_RNA | processed_transcript |
| 341457 | enst00000544897 | sg00000104866 | ppp1r37-207 | 19 | 45100064 | 45141386 | + | lnc_RNA | processed_transcript |
| -355378 | enst00000585868 | sg00000267508 | znf285-202 | 19 | 44387662 | 44401608 | - | mRNA | protein_coding |
| -355378 | enst00000588212 | sg00000267173 | ac245748.1-201 | 19 | 44329695 | 44401608 | - | mRNA | protein_coding |
| -355385 | enst00000589738 | sg00000267508 | znf285-203 | 19 | 44387922 | 44401601 | - | mRNA | nonsense_mediated_decay |
| -355385 | enst00000622707 | sg00000267508 | znf285-206 | 19 | 44396664 | 44401601 | - | lnc_RNA | retained_intron |
| -355397 | enst00000614994 | sg00000267508 | znf285-205 | 19 | 44382298 | 44401589 | - | mRNA | protein_coding |
| -355410 | enst00000544719 | sg00000267508 | znf285-201 | 19 | 44385649 | 44401576 | - | mRNA | protein_coding |
| -355411 | enst00000591679 | sg00000267508 | znf285-204 | 19 | 44385929 | 44401575 | - | mRNA | protein_coding |
| 369962 | enst00000589460 | sg00000267346 | eif5ap3-201 | 19 | 45128569 | 45129030 | + | pseudogenic_transcript | processed_pseudogene |
| 378370 | enst00000591432 | sg00000267044 | ac005757.1-201 | 19 | 45135993 | 45136977 | - | lnc_RNA | lncrna |
| 379969 | enst00000545910 | sg00000104866 | ppp1r37-208 | 19 | 45138576 | 45141386 | + | lnc_RNA | processed_transcript |
| 382811 | enst00000422370 | sg00000104866 | ppp1r37-202 | 19 | 45141418 | 45148077 | + | lnc_RNA | retained_intron |
| 386525 | enst00000540059 | sg00000104866 | ppp1r37-204 | 19 | 45145132 | 45147280 | + | lnc_RNA | retained_intron |
| -389769 | enst00000588057 | sg00000062370 | znf112-204 | 19 | 44329788 | 44367217 | - | mRNA | protein_coding |
| -389781 | enst00000590687 | sg00000062370 | znf112-205 | 19 | 44329708 | 44367205 | - | mRNA | protein_coding |
| 395245 | enst00000589776 | sg00000179846 | nkpd1-202 | 19 | 45151903 | 45153852 | - | mRNA | protein_coding |
| 400130 | enst00000317951 | sg00000179846 | nkpd1-201 | 19 | 45149750 | 45158737 | - | mRNA | protein_coding |
| -400304 | enst00000587909 | sg00000062370 | znf112-203 | 19 | 44329521 | 44356682 | - | mRNA | protein_coding |
| -400306 | enst00000337401 | sg00000062370 | znf112-201 | 19 | 44326943 | 44356680 | - | mRNA | protein_coding |
| -400312 | enst00000592151 | sg00000062370 | znf112-206 | 19 | 44329720 | 44356674 | - | mRNA | nonsense_mediated_decay |
| -400312 | enst00000354340 | sg00000062370 | znf112-202 | 19 | 44326555 | 44356674 | - | mRNA | protein_coding |
| 419604 | enst00000587818 | sg00000007255 | trappc6a-203 | 19 | 45164725 | 45178211 | - | lnc_RNA | retained_intron |
| 419620 | enst00000592647 | sg00000007255 | trappc6a-205 | 19 | 45163141 | 45178227 | - | mRNA | protein_coding |
| 419630 | enst00000588062 | sg00000007255 | trappc6a-204 | 19 | 45162928 | 45178237 | - | mRNA | protein_coding |
| 419630 | enst00000006275 | sg00000007255 | trappc6a-201 | 19 | 45162928 | 45178237 | - | mRNA | protein_coding |
| 419630 | enst00000585934 | sg00000007255 | trappc6a-202 | 19 | 45162933 | 45178237 | - | mRNA | protein_coding |
| 420177 | enst00000433642 | sg00000189114 | bloc1s3-201 | 19 | 45178784 | 45181800 | + | mRNA | protein_coding |
| 420616 | enst00000587722 | sg00000189114 | bloc1s3-202 | 19 | 45179223 | 45179954 | + | mRNA | protein_coding |
| 421062 | enst00000592910 | sg00000189114 | bloc1s3-205 | 19 | 45179669 | 45181466 | + | mRNA | protein_coding |
| 421215 | enst00000593083 | sg00000189114 | bloc1s3-206 | 19 | 45179822 | 45202444 | + | lnc_RNA | processed_transcript |
| 421307 | enst00000588362 | sg00000189114 | bloc1s3-203 | 19 | 45179914 | 45181569 | + | lnc_RNA | processed_transcript |
| 428781 | enst00000591569 | sg00000189114 | bloc1s3-204 | 19 | 45187388 | 45216933 | + | lnc_RNA | processed_transcript |
| -451940 | enst00000589248 | sg00000159917 | znf235-203 | 19 | 44274752 | 44305046 | - | mRNA | protein_coding |
| -451961 | enst00000650576 | sg00000159917 | znf235-207 | 19 | 44286364 | 44305025 | - | mRNA | protein_coding |
| -451961 | enst00000291182 | sg00000159917 | znf235-201 | 19 | 44286348 | 44305025 | - | mRNA | protein_coding |
| -451967 | enst00000589799 | sg00000159917 | znf235-204 | 19 | 44236110 | 44305019 | - | mRNA | protein_coding |
| -452018 | enst00000591609 | sg00000159917 | znf235-205 | 19 | 44288805 | 44304968 | - | mRNA | protein_coding |
| -453554 | enst00000592844 | sg00000159917 | znf235-206 | 19 | 44228729 | 44303432 | - | mRNA | nonsense_mediated_decay |
| -459882 | enst00000588007 | sg00000267590 | ndufa3p1-201 | 19 | 44297104 | 44297355 | + | pseudogenic_transcript | processed_pseudogene |
| -466420 | enst00000587921 | sg00000159917 | znf235-202 | 19 | 44286348 | 44290566 | - | lnc_RNA | retained_intron |
| -466905 | enst00000605717 | sg00000270679 | ac138473.1-201 | 19 | 44290081 | 44290911 | + | pseudogenic_transcript | processed_pseudogene |
| 473245 | enst00000252482 | sg00000283632 | exoc3l2-201 | 19 | 45213069 | 45231852 | - | mRNA | protein_coding |
| 486824 | enst00000413988 | sg00000283632 | exoc3l2-202 | 19 | 45212621 | 45245431 | - | mRNA | protein_coding |
| 492664 | enst00000262891 | sg00000007047 | mark4-201 | 19 | 45251271 | 45305284 | + | mRNA | protein_coding |
| -492673 | enst00000589522 | sg00000159915 | znf233-203 | 19 | 44264313 | 44268213 | + | mRNA | protein_coding |
| 492685 | enst00000300843 | sg00000007047 | mark4-202 | 19 | 45251292 | 45305283 | + | mRNA | protein_coding |
| 492780 | enst00000592762 | sg00000007047 | mark4-209 | 19 | 45251387 | 45280657 | + | mRNA | nonsense_mediated_decay |
| 492780 | enst00000620044 | sg00000007047 | mark4-210 | 19 | 45251387 | 45303681 | + | mRNA | protein_coding |
| -497063 | enst00000391958 | sg00000159915 | znf233-201 | 19 | 44259923 | 44275317 | + | mRNA | protein_coding |
| -497081 | enst00000588489 | sg00000159915 | znf233-202 | 19 | 44259905 | 44266900 | + | mRNA | protein_coding |
| -497100 | enst00000590668 | sg00000159915 | znf233-204 | 19 | 44259886 | 44273148 | + | mRNA | protein_coding |
| -497106 | enst00000592581 | sg00000159915 | znf233-205 | 19 | 44259880 | 44275309 | + | mRNA | protein_coding |
Source file: /hps/research1/birney/users/adrien/analyses/cancer_DNA_promethion/run_1_2_3_4/DNA_pipeline_2/results/methylation/pycometh_meth_comp_CGI_3/out.tsv.gz
MD5 hash: 9aa0e3f69cb4e12345c3758eb68a5efc