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CpG interval report generated on 20/05/20 with pycoMeth 0.4.6
Interval details
| pvalue rank | chromosome | start | end | length | number of samples | number of CpGs | pvalue | adjusted pvalue |
|---|---|---|---|---|---|---|---|---|
| #17 | 5 | 2748080 | 2750204 | 2124 | 3 | 62 | 1.74563e-27 | 1.02119e-24 |
Methylation log-likelihood ratio by CpG position
Distribution of CpG methylation log-likelihood ratio by sample
Closest transcripts TSS
| distance to tss | transcript id | gene id | transcript name | chromosome | start | end | strand | feature type | transcript biotype |
|---|---|---|---|---|---|---|---|---|---|
| 1458 | enst00000382611 | sg00000170561 | irx2-202 | 5 | 2745845 | 2751662 | - | mRNA | protein_coding |
| 1473 | enst00000302057 | sg00000170561 | irx2-201 | 5 | 2746165 | 2751677 | - | mRNA | protein_coding |
| 1927 | enst00000649739 | sg00000186493 | c5orf38-209 | 5 | 2752131 | 2755081 | + | lnc_RNA | processed_transcript |
| 1944 | enst00000647681 | sg00000186493 | c5orf38-208 | 5 | 2752148 | 2755397 | + | lnc_RNA | processed_transcript |
| 1944 | enst00000334000 | sg00000186493 | c5orf38-201 | 5 | 2752148 | 2755397 | + | mRNA | protein_coding |
| 2024 | enst00000650439 | sg00000186493 | c5orf38-210 | 5 | 2752228 | 2755081 | + | lnc_RNA | processed_transcript |
| 2024 | enst00000503940 | sg00000186493 | c5orf38-204 | 5 | 2752228 | 2755081 | + | lnc_RNA | processed_transcript |
| 2024 | enst00000505106 | sg00000186493 | c5orf38-205 | 5 | 2752228 | 2755081 | + | lnc_RNA | processed_transcript |
| 2042 | enst00000515640 | sg00000186493 | c5orf38-207 | 5 | 2752246 | 2754373 | + | lnc_RNA | processed_transcript |
| 2061 | enst00000505778 | sg00000186493 | c5orf38-206 | 5 | 2752265 | 2753359 | + | mRNA | protein_coding |
| 2061 | enst00000457752 | sg00000186493 | c5orf38-203 | 5 | 2752265 | 2755041 | + | mRNA | protein_coding |
| 2061 | enst00000397835 | sg00000186493 | c5orf38-202 | 5 | 2752265 | 2755376 | + | lnc_RNA | processed_transcript |
| -10321 | enst00000560688 | sg00000259757 | ac091891.1-201 | 5 | 2736662 | 2737759 | - | lnc_RNA | lncrna |
| -35489 | enst00000626215 | sg00000281560 | lsinct5-201 | 5 | 2712591 | 2715237 | + | lnc_RNA | lncrna |
| 38345 | enst00000510731 | sg00000249541 | ac116359.1-201 | 5 | 2787451 | 2788549 | - | pseudogenic_transcript | processed_pseudogene |
| 84935 | enst00000509745 | sg00000248137 | ac094105.1-201 | 5 | 2831021 | 2835139 | - | lnc_RNA | lncrna |
| 171292 | enst00000652017 | sg00000248736 | ac094105.2-201 | 5 | 2921496 | 2967621 | + | lnc_RNA | lncrna |
| 183553 | enst00000664294 | sg00000248736 | ac094105.2-203 | 5 | 2933757 | 2965538 | + | lnc_RNA | lncrna |
| 184950 | enst00000515086 | sg00000248736 | ac094105.2-202 | 5 | 2935154 | 2967955 | + | lnc_RNA | lncrna |
| 427631 | enst00000505396 | sg00000249808 | ac091832.1-201 | 5 | 3177835 | 3181232 | + | lnc_RNA | lncrna |
| 427659 | enst00000652864 | sg00000249808 | ac091832.1-202 | 5 | 3177863 | 3181487 | + | lnc_RNA | lncrna |
| -486221 | enst00000610958 | sg00000275733 | ac092266.1-201 | 5 | 2261859 | 2262023 | + | pseudogenic_transcript | processed_pseudogene |
Source file: /hps/research1/birney/users/adrien/analyses/cancer_DNA_promethion/run_1_2_3_4/DNA_pipeline_2/results/methylation/pycometh_meth_comp_CGI_3/out.tsv.gz
MD5 hash: 9aa0e3f69cb4e12345c3758eb68a5efc