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CpG interval report generated on 20/05/20 with pycoMeth 0.4.6
Interval details
| pvalue rank | chromosome | start | end | length | number of samples | number of CpGs | pvalue | adjusted pvalue |
|---|---|---|---|---|---|---|---|---|
| #16 | 16 | 693807 | 696068 | 2261 | 3 | 71 | 1.13622e-27 | 7.06229e-25 |
Methylation log-likelihood ratio by CpG position
Distribution of CpG methylation log-likelihood ratio by sample
Closest transcripts TSS
| distance to tss | transcript id | gene id | transcript name | chromosome | start | end | strand | feature type | transcript biotype |
|---|---|---|---|---|---|---|---|---|---|
| 0 | enst00000562648 | sg00000127585 | fbxl16-205 | 16 | 692498 | 695532 | - | lnc_RNA | retained_intron |
| 0 | enst00000562563 | sg00000127585 | fbxl16-203 | 16 | 692927 | 696025 | - | mRNA | protein_coding |
| 0 | enst00000562585 | sg00000127585 | fbxl16-204 | 16 | 694658 | 695263 | - | lnc_RNA | processed_transcript |
| -3363 | enst00000248142 | sg00000127580 | wdr24-201 | 16 | 684734 | 690444 | - | mRNA | protein_coding |
| -3409 | enst00000293883 | sg00000127580 | wdr24-202 | 16 | 684622 | 690398 | - | mRNA | protein_coding |
| -3560 | enst00000647644 | sg00000127580 | wdr24-204 | 16 | 684633 | 690247 | - | mRNA | protein_coding |
| -4313 | enst00000566927 | sg00000261659 | z92544.2-202 | 16 | 689494 | 692554 | + | lnc_RNA | lncrna |
| -4806 | enst00000575305 | sg00000261659 | z92544.2-201 | 16 | 689001 | 692413 | + | lnc_RNA | retained_intron |
| -6878 | enst00000567014 | sg00000127580 | wdr24-203 | 16 | 685450 | 686929 | - | lnc_RNA | retained_intron |
| -9279 | enst00000567120 | sg00000161999 | jmjd8-209 | 16 | 681671 | 684528 | - | lnc_RNA | retained_intron |
| -9425 | enst00000412368 | sg00000161999 | jmjd8-201 | 16 | 682794 | 684382 | - | mRNA | protein_coding |
| -9444 | enst00000562824 | sg00000161999 | jmjd8-203 | 16 | 682528 | 684363 | - | mRNA | protein_coding |
| -9461 | enst00000562111 | sg00000161999 | jmjd8-202 | 16 | 682658 | 684346 | - | mRNA | protein_coding |
| -9463 | enst00000568689 | sg00000161999 | jmjd8-212 | 16 | 681699 | 684344 | - | lnc_RNA | retained_intron |
| -9471 | enst00000565302 | sg00000161999 | jmjd8-207 | 16 | 681698 | 684336 | - | lnc_RNA | retained_intron |
| -9473 | enst00000609261 | sg00000161999 | jmjd8-216 | 16 | 681670 | 684334 | - | mRNA | protein_coding |
| -9476 | enst00000569396 | sg00000161999 | jmjd8-213 | 16 | 683185 | 684331 | - | lnc_RNA | retained_intron |
| -9487 | enst00000569441 | sg00000161999 | jmjd8-214 | 16 | 682406 | 684320 | - | lnc_RNA | retained_intron |
| -9493 | enst00000566199 | sg00000161999 | jmjd8-208 | 16 | 683343 | 684314 | - | lnc_RNA | retained_intron |
| -9504 | enst00000567901 | sg00000161999 | jmjd8-210 | 16 | 683355 | 684303 | - | lnc_RNA | retained_intron |
| -9652 | enst00000563088 | sg00000161999 | jmjd8-204 | 16 | 682543 | 684155 | - | lnc_RNA | retained_intron |
| -9706 | enst00000570037 | sg00000161999 | jmjd8-215 | 16 | 682658 | 684101 | - | lnc_RNA | retained_intron |
| 9733 | enst00000397621 | sg00000127585 | fbxl16-202 | 16 | 692500 | 705801 | - | mRNA | protein_coding |
| 9740 | enst00000324361 | sg00000127585 | fbxl16-201 | 16 | 692507 | 705808 | - | mRNA | protein_coding |
| -10207 | enst00000565258 | sg00000161999 | jmjd8-206 | 16 | 682772 | 683600 | - | mRNA | nonsense_mediated_decay |
| -10221 | enst00000564436 | sg00000161999 | jmjd8-205 | 16 | 682575 | 683586 | - | lnc_RNA | retained_intron |
| -10701 | enst00000568313 | sg00000161999 | jmjd8-211 | 16 | 682074 | 683106 | - | lnc_RNA | retained_intron |
| -11391 | enst00000565813 | sg00000103266 | stub1-206 | 16 | 682416 | 682870 | + | mRNA | nonsense_mediated_decay |
| 11582 | enst00000623057 | sg00000279255 | z97653.2-201 | 16 | 707650 | 709067 | + | unconfirmed_transcript | tec |
| -12326 | enst00000564316 | sg00000103266 | stub1-203 | 16 | 681481 | 682746 | + | mRNA | protein_coding |
| -12531 | enst00000566408 | sg00000103266 | stub1-208 | 16 | 681276 | 682462 | + | mRNA | protein_coding |
| -12583 | enst00000566181 | sg00000103266 | stub1-207 | 16 | 681224 | 682213 | + | lnc_RNA | processed_transcript |
| -12770 | enst00000564370 | sg00000103266 | stub1-204 | 16 | 681037 | 682496 | + | mRNA | protein_coding |
| -13368 | enst00000567790 | sg00000103266 | stub1-210 | 16 | 680439 | 681390 | + | lnc_RNA | retained_intron |
| -13377 | enst00000563505 | sg00000103266 | stub1-202 | 16 | 680430 | 682066 | + | lnc_RNA | retained_intron |
| -13383 | enst00000567173 | sg00000103266 | stub1-209 | 16 | 680424 | 682193 | + | mRNA | protein_coding |
| -13388 | enst00000569248 | sg00000103266 | stub1-211 | 16 | 680419 | 682717 | + | lnc_RNA | retained_intron |
| -13397 | enst00000219548 | sg00000103266 | stub1-201 | 16 | 680410 | 682801 | + | mRNA | protein_coding |
| -13583 | enst00000565677 | sg00000103266 | stub1-205 | 16 | 680224 | 682746 | + | mRNA | protein_coding |
| -14030 | enst00000567091 | sg00000260394 | z92544.1-201 | 16 | 678504 | 679777 | - | lnc_RNA | lncrna |
| -14070 | enst00000571933 | sg00000260394 | z92544.1-202 | 16 | 678518 | 679737 | - | lnc_RNA | lncrna |
| -15162 | enst00000624747 | sg00000279441 | z92544.3-201 | 16 | 678645 | 679061 | + | unconfirmed_transcript | tec |
| 15209 | enst00000567096 | sg00000259840 | z97653.1-201 | 16 | 710746 | 711277 | - | lnc_RNA | lncrna |
| -17732 | enst00000219551 | sg00000103269 | rhbdl1-201 | 16 | 676075 | 678268 | + | mRNA | protein_coding |
| -18085 | enst00000450775 | sg00000103269 | rhbdl1-203 | 16 | 675722 | 678267 | + | lnc_RNA | retained_intron |
| -18124 | enst00000561556 | sg00000103269 | rhbdl1-204 | 16 | 675683 | 677843 | + | mRNA | protein_coding |
| -18141 | enst00000352681 | sg00000103269 | rhbdl1-202 | 16 | 675666 | 678268 | + | mRNA | protein_coding |
| 19050 | enst00000568223 | sg00000103260 | metrn-204 | 16 | 715118 | 719655 | + | mRNA | protein_coding |
| 19169 | enst00000570132 | sg00000103260 | metrn-206 | 16 | 715237 | 717247 | + | mRNA | nonsense_mediated_decay |
| 19270 | enst00000219542 | sg00000103260 | metrn-201 | 16 | 715338 | 717390 | + | mRNA | protein_coding |
| 19573 | enst00000567076 | sg00000103260 | metrn-203 | 16 | 715641 | 717477 | + | mRNA | protein_coding |
| 20359 | enst00000564661 | sg00000103260 | metrn-202 | 16 | 716427 | 717817 | + | lnc_RNA | retained_intron |
| 20506 | enst00000568415 | sg00000103260 | metrn-205 | 16 | 716574 | 717480 | + | mRNA | protein_coding |
| -21015 | enst00000562957 | sg00000140983 | rhot2-208 | 16 | 672792 | 673537 | + | lnc_RNA | retained_intron |
| -21058 | enst00000569197 | sg00000140983 | rhot2-220 | 16 | 672749 | 674165 | + | mRNA | protein_coding |
| -21139 | enst00000564659 | sg00000140983 | rhot2-212 | 16 | 672668 | 673972 | + | lnc_RNA | retained_intron |
| -21890 | enst00000561711 | sg00000140983 | rhot2-202 | 16 | 671917 | 672817 | + | lnc_RNA | retained_intron |
| -22725 | enst00000565004 | sg00000140983 | rhot2-213 | 16 | 671082 | 673057 | + | lnc_RNA | retained_intron |
| -23279 | enst00000567589 | sg00000140983 | rhot2-217 | 16 | 670528 | 671312 | + | lnc_RNA | retained_intron |
| -23352 | enst00000569358 | sg00000140983 | rhot2-221 | 16 | 670455 | 673059 | + | lnc_RNA | retained_intron |
| 24513 | enst00000566525 | sg00000103254 | antkmt-205 | 16 | 720581 | 722589 | + | lnc_RNA | retained_intron |
| 25029 | enst00000564000 | sg00000103254 | antkmt-202 | 16 | 721097 | 722585 | + | mRNA | protein_coding |
| 25074 | enst00000219535 | sg00000103254 | antkmt-201 | 16 | 721142 | 722573 | + | mRNA | protein_coding |
| 25078 | enst00000569529 | sg00000103254 | antkmt-207 | 16 | 721146 | 722590 | + | mRNA | protein_coding |
| 25078 | enst00000564640 | sg00000103254 | antkmt-203 | 16 | 721146 | 722312 | + | lnc_RNA | retained_intron |
| -25149 | enst00000568636 | sg00000140983 | rhot2-218 | 16 | 668658 | 674125 | + | lnc_RNA | retained_intron |
| 25157 | enst00000566437 | sg00000103254 | antkmt-204 | 16 | 721225 | 722508 | + | lnc_RNA | retained_intron |
| -25247 | enst00000566965 | sg00000140983 | rhot2-215 | 16 | 668560 | 671785 | + | lnc_RNA | retained_intron |
| -25454 | enst00000569943 | sg00000140983 | rhot2-224 | 16 | 668353 | 670959 | + | lnc_RNA | processed_transcript |
| -25598 | enst00000561929 | sg00000140983 | rhot2-203 | 16 | 668209 | 670940 | + | mRNA | protein_coding |
| 25604 | enst00000568916 | sg00000103254 | antkmt-206 | 16 | 721672 | 722590 | + | mRNA | protein_coding |
| -25620 | enst00000562333 | sg00000140983 | rhot2-205 | 16 | 668187 | 671993 | + | mRNA | nonsense_mediated_decay |
| -25625 | enst00000562598 | sg00000140983 | rhot2-206 | 16 | 668182 | 670538 | + | lnc_RNA | retained_intron |
| -25627 | enst00000602564 | sg00000140983 | rhot2-227 | 16 | 668180 | 673308 | + | lnc_RNA | retained_intron |
| -25629 | enst00000568950 | sg00000140983 | rhot2-219 | 16 | 668178 | 672297 | + | lnc_RNA | retained_intron |
| -25645 | enst00000567017 | sg00000140983 | rhot2-216 | 16 | 668162 | 671933 | + | lnc_RNA | retained_intron |
| -25654 | enst00000570280 | sg00000140983 | rhot2-226 | 16 | 668153 | 671131 | + | mRNA | nonsense_mediated_decay |
| -25656 | enst00000566214 | sg00000140983 | rhot2-214 | 16 | 668151 | 670773 | + | mRNA | nonsense_mediated_decay |
| -25656 | enst00000563637 | sg00000140983 | rhot2-210 | 16 | 668151 | 671934 | + | mRNA | nonsense_mediated_decay |
| -25672 | enst00000569675 | sg00000140983 | rhot2-222 | 16 | 668135 | 674174 | + | lnc_RNA | retained_intron |
| -25675 | enst00000315082 | sg00000140983 | rhot2-201 | 16 | 668132 | 674171 | + | mRNA | protein_coding |
| -25675 | enst00000569706 | sg00000140983 | rhot2-223 | 16 | 668132 | 668881 | + | lnc_RNA | retained_intron |
| -25683 | enst00000570092 | sg00000140983 | rhot2-225 | 16 | 668124 | 670507 | + | lnc_RNA | retained_intron |
| -25695 | enst00000562708 | sg00000140983 | rhot2-207 | 16 | 668112 | 670525 | + | lnc_RNA | retained_intron |
| -25701 | enst00000563134 | sg00000140983 | rhot2-209 | 16 | 668106 | 670993 | + | mRNA | protein_coding |
| -25702 | enst00000561983 | sg00000140983 | rhot2-204 | 16 | 668105 | 671199 | + | mRNA | nonsense_mediated_decay |
| -25702 | enst00000563776 | sg00000140983 | rhot2-211 | 16 | 668105 | 671162 | + | lnc_RNA | retained_intron |
| 25874 | enst00000570237 | sg00000103254 | antkmt-208 | 16 | 721942 | 722590 | + | lnc_RNA | retained_intron |
| -26896 | enst00000546896 | sg00000161996 | wdr90-205 | 16 | 666911 | 667830 | + | mRNA | protein_coding |
| -27311 | enst00000551100 | sg00000161996 | wdr90-220 | 16 | 666496 | 667831 | + | mRNA | protein_coding |
| -27933 | enst00000548448 | sg00000161996 | wdr90-210 | 16 | 665874 | 666361 | + | lnc_RNA | retained_intron |
| -28549 | enst00000315764 | sg00000161996 | wdr90-202 | 16 | 665258 | 667830 | + | mRNA | protein_coding |
| 28567 | enst00000482152 | sg00000162004 | ccdc78-212 | 16 | 722625 | 724635 | - | lnc_RNA | retained_intron |
| -28623 | enst00000547944 | sg00000161996 | wdr90-209 | 16 | 665184 | 667830 | + | mRNA | protein_coding |
| -28819 | enst00000553080 | sg00000161996 | wdr90-225 | 16 | 664988 | 667829 | + | lnc_RNA | retained_intron |
| 29787 | enst00000544996 | sg00000162004 | ccdc78-216 | 16 | 724984 | 725855 | - | lnc_RNA | retained_intron |
| 30299 | enst00000460023 | sg00000162004 | ccdc78-205 | 16 | 724907 | 726367 | - | lnc_RNA | retained_intron |
| 30361 | enst00000485091 | sg00000162004 | ccdc78-214 | 16 | 722582 | 726429 | - | lnc_RNA | retained_intron |
| 30362 | enst00000463539 | sg00000162004 | ccdc78-206 | 16 | 722582 | 726430 | - | lnc_RNA | retained_intron |
| 30369 | enst00000538176 | sg00000162004 | ccdc78-215 | 16 | 724542 | 726437 | - | lnc_RNA | retained_intron |
| 30375 | enst00000478979 | sg00000162004 | ccdc78-210 | 16 | 722583 | 726443 | - | lnc_RNA | retained_intron |
| 30375 | enst00000481804 | sg00000162004 | ccdc78-211 | 16 | 722588 | 726443 | - | lnc_RNA | retained_intron |
| 30376 | enst00000439619 | sg00000162004 | ccdc78-204 | 16 | 724550 | 726444 | - | lnc_RNA | retained_intron |
| 30388 | enst00000345165 | sg00000162004 | ccdc78-202 | 16 | 722582 | 726456 | - | mRNA | protein_coding |
| 30388 | enst00000482878 | sg00000162004 | ccdc78-213 | 16 | 722582 | 726456 | - | lnc_RNA | retained_intron |
| 30390 | enst00000650995 | sg00000162004 | ccdc78-217 | 16 | 725794 | 726458 | - | mRNA | protein_coding |
| 30405 | enst00000293889 | sg00000162004 | ccdc78-201 | 16 | 722582 | 726473 | - | mRNA | protein_coding |
| -30667 | enst00000547543 | sg00000161996 | wdr90-208 | 16 | 663140 | 666745 | + | lnc_RNA | processed_transcript |
| 30778 | enst00000423653 | sg00000162004 | ccdc78-203 | 16 | 724927 | 726846 | - | mRNA | protein_coding |
| 30800 | enst00000474647 | sg00000162004 | ccdc78-209 | 16 | 725123 | 726868 | - | lnc_RNA | retained_intron |
| 30812 | enst00000466708 | sg00000162004 | ccdc78-207 | 16 | 722588 | 726880 | - | lnc_RNA | retained_intron |
| 30868 | enst00000549114 | sg00000103253 | haghl-204 | 16 | 726936 | 729733 | + | mRNA | protein_coding |
| 30886 | enst00000471861 | sg00000162004 | ccdc78-208 | 16 | 725001 | 726954 | - | lnc_RNA | retained_intron |
| 30890 | enst00000341413 | sg00000103253 | haghl-201 | 16 | 726958 | 729715 | + | mRNA | protein_coding |
| 31038 | enst00000562187 | sg00000103253 | haghl-209 | 16 | 727106 | 727549 | + | mRNA | protein_coding |
| 31038 | enst00000564537 | sg00000103253 | haghl-212 | 16 | 727106 | 729715 | + | mRNA | protein_coding |
| 31051 | enst00000562141 | sg00000103253 | haghl-208 | 16 | 727119 | 728895 | + | mRNA | protein_coding |
| 31178 | enst00000561546 | sg00000103253 | haghl-205 | 16 | 727246 | 729185 | + | mRNA | protein_coding |
| 31194 | enst00000564545 | sg00000103253 | haghl-213 | 16 | 727262 | 728985 | + | mRNA | protein_coding |
| 31203 | enst00000389703 | sg00000103253 | haghl-203 | 16 | 727271 | 729715 | + | mRNA | protein_coding |
| 31207 | enst00000561750 | sg00000103253 | haghl-207 | 16 | 727275 | 728532 | + | lnc_RNA | retained_intron |
| 31225 | enst00000567414 | sg00000103253 | haghl-214 | 16 | 727293 | 728624 | + | mRNA | protein_coding |
| 31250 | enst00000569143 | sg00000103253 | haghl-217 | 16 | 727318 | 728166 | + | lnc_RNA | retained_intron |
| 31250 | enst00000567696 | sg00000103253 | haghl-215 | 16 | 727318 | 729715 | + | lnc_RNA | retained_intron |
| 31278 | enst00000568141 | sg00000103253 | haghl-216 | 16 | 727346 | 728603 | + | mRNA | protein_coding |
| 31337 | enst00000389701 | sg00000103253 | haghl-202 | 16 | 727405 | 729715 | + | lnc_RNA | retained_intron |
| -31532 | enst00000548603 | sg00000161996 | wdr90-211 | 16 | 662275 | 663437 | + | lnc_RNA | processed_transcript |
| 31671 | enst00000563792 | sg00000103253 | haghl-211 | 16 | 727739 | 728399 | + | mRNA | protein_coding |
| -32075 | enst00000546923 | sg00000161996 | wdr90-206 | 16 | 661732 | 662736 | + | lnc_RNA | retained_intron |
| -32219 | enst00000550902 | sg00000161996 | wdr90-219 | 16 | 661588 | 662224 | + | lnc_RNA | retained_intron |
| 32284 | enst00000561561 | sg00000103253 | haghl-206 | 16 | 728352 | 729087 | + | mRNA | nonsense_mediated_decay |
| 32443 | enst00000647875 | sg00000103253 | haghl-220 | 16 | 728511 | 735353 | + | lnc_RNA | processed_transcript |
| 32446 | enst00000563156 | sg00000103253 | haghl-210 | 16 | 728514 | 733847 | + | lnc_RNA | processed_transcript |
| 32504 | enst00000569385 | sg00000103253 | haghl-218 | 16 | 728572 | 729313 | + | mRNA | nonsense_mediated_decay |
| -32742 | enst00000549024 | sg00000161996 | wdr90-214 | 16 | 661065 | 667829 | + | lnc_RNA | retained_intron |
| -34562 | enst00000550739 | sg00000161996 | wdr90-218 | 16 | 659245 | 660714 | + | mRNA | protein_coding |
| -35247 | enst00000548844 | sg00000161996 | wdr90-212 | 16 | 658560 | 661075 | + | lnc_RNA | processed_transcript |
| -35949 | enst00000552683 | sg00000161996 | wdr90-222 | 16 | 657858 | 663438 | + | lnc_RNA | retained_intron |
| 36832 | enst00000563051 | sg00000103245 | ciao3-206 | 16 | 729771 | 732900 | - | lnc_RNA | retained_intron |
| 36832 | enst00000564285 | sg00000103245 | ciao3-208 | 16 | 730202 | 732900 | - | lnc_RNA | retained_intron |
| 36987 | enst00000569604 | sg00000103253 | haghl-219 | 16 | 733055 | 735525 | + | lnc_RNA | processed_transcript |
| 37266 | enst00000566650 | sg00000103245 | ciao3-214 | 16 | 729766 | 733334 | - | lnc_RNA | retained_intron |
| -37374 | enst00000548859 | sg00000161996 | wdr90-213 | 16 | 656433 | 657357 | + | lnc_RNA | retained_intron |
| -37386 | enst00000552728 | sg00000161996 | wdr90-223 | 16 | 656421 | 667830 | + | mRNA | nonsense_mediated_decay |
| -37532 | enst00000547407 | sg00000161996 | wdr90-207 | 16 | 656275 | 667829 | + | lnc_RNA | retained_intron |
| -37613 | enst00000573609 | sg00000262528 | al022341.2-201 | 16 | 654611 | 656194 | - | lnc_RNA | lncrna |
| 38170 | enst00000562862 | sg00000103245 | ciao3-205 | 16 | 730105 | 734238 | - | lnc_RNA | processed_transcript |
| -38749 | enst00000546516 | sg00000161996 | wdr90-204 | 16 | 655058 | 663433 | + | lnc_RNA | retained_intron |
| -38749 | enst00000552648 | sg00000161996 | wdr90-221 | 16 | 655058 | 657123 | + | lnc_RNA | processed_transcript |
| 40302 | enst00000569759 | sg00000103245 | ciao3-219 | 16 | 734078 | 736370 | - | lnc_RNA | processed_transcript |
| 41396 | enst00000563534 | sg00000103245 | ciao3-207 | 16 | 734715 | 737464 | - | lnc_RNA | processed_transcript |
| 41684 | enst00000567403 | sg00000103245 | ciao3-216 | 16 | 734284 | 737752 | - | mRNA | protein_coding |
| -41685 | enst00000550593 | sg00000161996 | wdr90-217 | 16 | 652122 | 653470 | + | lnc_RNA | retained_intron |
| 41687 | enst00000562421 | sg00000103245 | ciao3-203 | 16 | 732332 | 737755 | - | mRNA | protein_coding |
| 41821 | enst00000568545 | sg00000103245 | ciao3-218 | 16 | 729760 | 737889 | - | mRNA | protein_coding |
| -44442 | enst00000293879 | sg00000161996 | wdr90-201 | 16 | 649365 | 667830 | + | mRNA | protein_coding |
| -44454 | enst00000420061 | sg00000161996 | wdr90-203 | 16 | 649353 | 656201 | + | lnc_RNA | retained_intron |
| -44454 | enst00000549648 | sg00000161996 | wdr90-216 | 16 | 649353 | 656201 | + | lnc_RNA | retained_intron |
| -44482 | enst00000549091 | sg00000161996 | wdr90-215 | 16 | 649325 | 667833 | + | mRNA | protein_coding |
| -44496 | enst00000552943 | sg00000161996 | wdr90-224 | 16 | 649311 | 661075 | + | lnc_RNA | retained_intron |
| -44607 | enst00000455294 | sg00000228201 | al022341.1-201 | 16 | 648473 | 649200 | - | lnc_RNA | lncrna |
| 44866 | enst00000540986 | sg00000103245 | ciao3-202 | 16 | 729766 | 740934 | - | mRNA | protein_coding |
| 44920 | enst00000570289 | sg00000103245 | ciao3-221 | 16 | 736265 | 740988 | - | mRNA | nonsense_mediated_decay |
| 44929 | enst00000565341 | sg00000103245 | ciao3-210 | 16 | 733702 | 740997 | - | lnc_RNA | retained_intron |
| 44929 | enst00000562752 | sg00000103245 | ciao3-204 | 16 | 733841 | 740997 | - | lnc_RNA | retained_intron |
| 44929 | enst00000565065 | sg00000103245 | ciao3-209 | 16 | 734771 | 740997 | - | mRNA | nonsense_mediated_decay |
| 44929 | enst00000565425 | sg00000103245 | ciao3-211 | 16 | 729809 | 740997 | - | mRNA | nonsense_mediated_decay |
| 44929 | enst00000567172 | sg00000103245 | ciao3-215 | 16 | 739318 | 740997 | - | lnc_RNA | processed_transcript |
| 44929 | enst00000565693 | sg00000103245 | ciao3-212 | 16 | 737981 | 740997 | - | lnc_RNA | processed_transcript |
| 44929 | enst00000567455 | sg00000103245 | ciao3-217 | 16 | 736994 | 740997 | - | lnc_RNA | processed_transcript |
| 44929 | enst00000251588 | sg00000103245 | ciao3-201 | 16 | 729765 | 740997 | - | mRNA | protein_coding |
| 44947 | enst00000570066 | sg00000103245 | ciao3-220 | 16 | 736368 | 741015 | - | mRNA | nonsense_mediated_decay |
| 45261 | enst00000566614 | sg00000103245 | ciao3-213 | 16 | 734845 | 741329 | - | mRNA | protein_coding |
| -47060 | enst00000575894 | sg00000172366 | mcrip2-204 | 16 | 646747 | 648474 | + | lnc_RNA | retained_intron |
| -48681 | enst00000619674 | sg00000172366 | mcrip2-209 | 16 | 645126 | 648474 | + | lnc_RNA | retained_intron |
| -51324 | enst00000620462 | sg00000172366 | mcrip2-210 | 16 | 642483 | 648446 | + | lnc_RNA | retained_intron |
| -51356 | enst00000615744 | sg00000172366 | mcrip2-206 | 16 | 642451 | 648437 | + | lnc_RNA | processed_transcript |
| -51878 | enst00000474840 | sg00000172366 | mcrip2-202 | 16 | 641929 | 648474 | + | mRNA | nonsense_mediated_decay |
| -51958 | enst00000629534 | sg00000172366 | mcrip2-211 | 16 | 641849 | 646487 | + | mRNA | protein_coding |
| -51961 | enst00000491999 | sg00000172366 | mcrip2-203 | 16 | 641846 | 648474 | + | mRNA | nonsense_mediated_decay |
| -51979 | enst00000307650 | sg00000172366 | mcrip2-201 | 16 | 641828 | 648474 | + | mRNA | protein_coding |
| -56791 | enst00000619114 | sg00000172366 | mcrip2-207 | 16 | 637016 | 638587 | + | lnc_RNA | processed_transcript |
| -56904 | enst00000611328 | sg00000172366 | mcrip2-205 | 16 | 636903 | 648474 | + | lnc_RNA | processed_transcript |
| -56990 | enst00000619377 | sg00000172366 | mcrip2-208 | 16 | 636817 | 638620 | + | lnc_RNA | processed_transcript |
| -57441 | enst00000614890 | sg00000130731 | mettl26-214 | 16 | 634427 | 636366 | - | mRNA | protein_coding |
| -57449 | enst00000568830 | sg00000130731 | mettl26-213 | 16 | 634949 | 636358 | - | mRNA | protein_coding |
| -57456 | enst00000397664 | sg00000130731 | mettl26-203 | 16 | 634438 | 636351 | - | mRNA | protein_coding |
| -57465 | enst00000338401 | sg00000130731 | mettl26-202 | 16 | 634429 | 636342 | - | mRNA | protein_coding |
| -57476 | enst00000568077 | sg00000130731 | mettl26-211 | 16 | 634502 | 636331 | - | mRNA | nonsense_mediated_decay |
| -57497 | enst00000448973 | sg00000130731 | mettl26-206 | 16 | 634436 | 636310 | - | lnc_RNA | retained_intron |
| -57502 | enst00000301686 | sg00000130731 | mettl26-201 | 16 | 634430 | 636305 | - | mRNA | protein_coding |
| -57505 | enst00000397666 | sg00000130731 | mettl26-205 | 16 | 634430 | 636302 | - | mRNA | protein_coding |
| -57517 | enst00000397665 | sg00000130731 | mettl26-204 | 16 | 634526 | 636290 | - | mRNA | protein_coding |
| -57529 | enst00000564039 | sg00000130731 | mettl26-208 | 16 | 634626 | 636278 | - | mRNA | nonsense_mediated_decay |
| -57540 | enst00000565799 | sg00000130731 | mettl26-210 | 16 | 635281 | 636267 | - | lnc_RNA | retained_intron |
| -57547 | enst00000565163 | sg00000130731 | mettl26-209 | 16 | 634737 | 636260 | - | mRNA | protein_coding |
| -57568 | enst00000456420 | sg00000130731 | mettl26-207 | 16 | 634513 | 636239 | - | mRNA | nonsense_mediated_decay |
| -57572 | enst00000568773 | sg00000130731 | mettl26-212 | 16 | 634664 | 636235 | - | mRNA | protein_coding |
| -62822 | enst00000319070 | sg00000127578 | wfikkn1-201 | 16 | 630985 | 634117 | + | mRNA | protein_coding |
| -64568 | enst00000573440 | sg00000127578 | wfikkn1-202 | 16 | 629239 | 634116 | + | lnc_RNA | retained_intron |
| 64666 | enst00000545450 | sg00000102854 | msln-202 | 16 | 760734 | 768862 | + | mRNA | protein_coding |
| 64694 | enst00000563941 | sg00000102854 | msln-205 | 16 | 760762 | 768862 | + | mRNA | protein_coding |
| 64699 | enst00000566549 | sg00000102854 | msln-207 | 16 | 760767 | 768865 | + | mRNA | protein_coding |
| 65021 | enst00000382862 | sg00000102854 | msln-201 | 16 | 761089 | 768861 | + | mRNA | protein_coding |
| 65030 | enst00000563651 | sg00000102854 | msln-204 | 16 | 761098 | 766429 | + | mRNA | protein_coding |
| 66456 | enst00000569566 | sg00000102854 | msln-208 | 16 | 762524 | 765036 | + | mRNA | protein_coding |
| -68193 | enst00000561781 | sg00000197562 | rab40c-206 | 16 | 625614 | 629272 | + | lnc_RNA | retained_intron |
| 69664 | enst00000566269 | sg00000102854 | msln-206 | 16 | 765732 | 768798 | + | mRNA | protein_coding |
| 69716 | enst00000561896 | sg00000102854 | msln-203 | 16 | 765784 | 768865 | + | mRNA | protein_coding |
| 73375 | enst00000623562 | sg00000279136 | al031258.1-201 | 16 | 769119 | 769443 | - | unconfirmed_transcript | tec |
| 74115 | enst00000384847 | sg00000207579 | mir662-201 | 16 | 770183 | 770277 | + | miRNA | mirna |
| -77162 | enst00000564703 | sg00000197562 | rab40c-208 | 16 | 616645 | 626117 | + | mRNA | protein_coding |
| 82632 | enst00000537221 | sg00000162006 | mslnl-202 | 16 | 774188 | 778700 | - | lnc_RNA | retained_intron |
| 85986 | enst00000543963 | sg00000162006 | mslnl-203 | 16 | 769428 | 782054 | - | mRNA | protein_coding |
| 87302 | enst00000442466 | sg00000162006 | mslnl-201 | 16 | 769428 | 783370 | - | mRNA | protein_coding |
| 91401 | enst00000562070 | sg00000007376 | rpusd1-203 | 16 | 786194 | 787469 | - | mRNA | protein_coding |
| 91913 | enst00000561734 | sg00000007376 | rpusd1-202 | 16 | 784974 | 787981 | - | mRNA | protein_coding |
| 91978 | enst00000631357 | sg00000127586 | chtf18-220 | 16 | 788046 | 797975 | + | mRNA | protein_coding |
| 92261 | enst00000563560 | sg00000007376 | rpusd1-204 | 16 | 786841 | 788329 | - | mRNA | protein_coding |
| 92265 | enst00000567283 | sg00000007376 | rpusd1-209 | 16 | 786149 | 788333 | - | mRNA | nonsense_mediated_decay |
| 92266 | enst00000569601 | sg00000007376 | rpusd1-210 | 16 | 785968 | 788334 | - | mRNA | protein_coding |
| 92272 | enst00000565503 | sg00000007376 | rpusd1-206 | 16 | 786826 | 788340 | - | mRNA | nonsense_mediated_decay |
| 92303 | enst00000565809 | sg00000007376 | rpusd1-207 | 16 | 784991 | 788371 | - | mRNA | protein_coding |
| 92313 | enst00000565377 | sg00000007376 | rpusd1-205 | 16 | 785983 | 788381 | - | mRNA | protein_coding |
| 92313 | enst00000007264 | sg00000007376 | rpusd1-201 | 16 | 784974 | 788381 | - | mRNA | protein_coding |
| 92329 | enst00000567114 | sg00000007376 | rpusd1-208 | 16 | 785014 | 788397 | - | mRNA | protein_coding |
| 92552 | enst00000262315 | sg00000127586 | chtf18-201 | 16 | 788620 | 798074 | + | mRNA | protein_coding |
| 92554 | enst00000464728 | sg00000127586 | chtf18-207 | 16 | 788622 | 798063 | + | lnc_RNA | retained_intron |
| 92556 | enst00000570058 | sg00000127586 | chtf18-219 | 16 | 788624 | 789340 | + | lnc_RNA | processed_transcript |
| 92556 | enst00000479976 | sg00000127586 | chtf18-209 | 16 | 788624 | 790805 | + | lnc_RNA | retained_intron |
| 92556 | enst00000455171 | sg00000127586 | chtf18-205 | 16 | 788624 | 798074 | + | mRNA | protein_coding |
| 92556 | enst00000563545 | sg00000127586 | chtf18-214 | 16 | 788624 | 789636 | + | mRNA | nonsense_mediated_decay |
| 92557 | enst00000440239 | sg00000127586 | chtf18-204 | 16 | 788625 | 793190 | + | mRNA | nonsense_mediated_decay |
| 92557 | enst00000317063 | sg00000127586 | chtf18-202 | 16 | 788625 | 797975 | + | mRNA | protein_coding |
| 92567 | enst00000471202 | sg00000127586 | chtf18-208 | 16 | 788635 | 798072 | + | lnc_RNA | retained_intron |
| 93146 | enst00000491530 | sg00000127586 | chtf18-211 | 16 | 789214 | 791370 | + | lnc_RNA | processed_transcript |
| 93245 | enst00000426047 | sg00000127586 | chtf18-203 | 16 | 789313 | 791370 | + | mRNA | protein_coding |
| 93251 | enst00000484349 | sg00000127586 | chtf18-210 | 16 | 789319 | 790549 | + | lnc_RNA | retained_intron |
| 94183 | enst00000569270 | sg00000127586 | chtf18-218 | 16 | 790251 | 793006 | + | mRNA | nonsense_mediated_decay |
| 94631 | enst00000567620 | sg00000127586 | chtf18-217 | 16 | 790699 | 791879 | + | lnc_RNA | retained_intron |
| 95069 | enst00000565787 | sg00000127586 | chtf18-216 | 16 | 791137 | 792814 | + | lnc_RNA | retained_intron |
| 96456 | enst00000461268 | sg00000127586 | chtf18-206 | 16 | 792524 | 795720 | + | lnc_RNA | processed_transcript |
| 98634 | enst00000493715 | sg00000127586 | chtf18-212 | 16 | 794702 | 796758 | + | lnc_RNA | processed_transcript |
| 100547 | enst00000498439 | sg00000127586 | chtf18-213 | 16 | 796615 | 798074 | + | lnc_RNA | retained_intron |
| 101973 | enst00000564940 | sg00000127586 | chtf18-215 | 16 | 798041 | 800737 | + | lnc_RNA | processed_transcript |
| -103475 | enst00000563109 | sg00000197562 | rab40c-207 | 16 | 590332 | 627583 | + | mRNA | protein_coding |
| -103511 | enst00000509637 | sg00000197562 | rab40c-202 | 16 | 590296 | 625993 | + | mRNA | nonsense_mediated_decay |
| -103565 | enst00000565511 | sg00000197562 | rab40c-209 | 16 | 590242 | 626083 | + | mRNA | nonsense_mediated_decay |
| -103730 | enst00000538492 | sg00000197562 | rab40c-204 | 16 | 590077 | 629271 | + | mRNA | protein_coding |
| -103739 | enst00000568586 | sg00000197562 | rab40c-211 | 16 | 590068 | 626121 | + | mRNA | protein_coding |
| -103741 | enst00000248139 | sg00000197562 | rab40c-201 | 16 | 590066 | 629268 | + | mRNA | protein_coding |
| -104138 | enst00000566290 | sg00000197562 | rab40c-210 | 16 | 589669 | 627415 | + | mRNA | protein_coding |
| -104138 | enst00000539661 | sg00000197562 | rab40c-205 | 16 | 589669 | 629271 | + | mRNA | protein_coding |
| -104450 | enst00000535977 | sg00000197562 | rab40c-203 | 16 | 589357 | 629271 | + | mRNA | protein_coding |
| -104450 | enst00000569575 | sg00000197562 | rab40c-212 | 16 | 589357 | 626026 | + | mRNA | protein_coding |
| 104666 | enst00000248150 | sg00000127588 | gng13-201 | 16 | 798041 | 800734 | - | mRNA | protein_coding |
| -110223 | enst00000638152 | sg00000007541 | pigq-225 | 16 | 583584 | 583770 | + | lnc_RNA | processed_transcript |
| -110930 | enst00000634341 | sg00000007541 | pigq-216 | 16 | 582877 | 583922 | + | lnc_RNA | retained_intron |
| -111317 | enst00000540548 | sg00000007541 | pigq-214 | 16 | 582490 | 582947 | + | lnc_RNA | processed_transcript |
| -112046 | enst00000476438 | sg00000007541 | pigq-210 | 16 | 581761 | 584108 | + | lnc_RNA | retained_intron |
| -114716 | enst00000540241 | sg00000007541 | pigq-213 | 16 | 579091 | 583223 | + | mRNA | protein_coding |
| -114880 | enst00000480424 | sg00000007541 | pigq-211 | 16 | 578927 | 584108 | + | lnc_RNA | retained_intron |
| -114976 | enst00000635205 | sg00000007541 | pigq-217 | 16 | 578831 | 583455 | + | mRNA | nonsense_mediated_decay |
| -115402 | enst00000420990 | sg00000007541 | pigq-205 | 16 | 578405 | 582647 | + | mRNA | nonsense_mediated_decay |
| -115516 | enst00000635935 | sg00000007541 | pigq-219 | 16 | 578291 | 580777 | + | lnc_RNA | processed_transcript |
| -115747 | enst00000537901 | sg00000007541 | pigq-212 | 16 | 578060 | 578802 | + | lnc_RNA | retained_intron |
| -115906 | enst00000544860 | sg00000007541 | pigq-215 | 16 | 577901 | 578843 | + | lnc_RNA | processed_transcript |
| -117861 | enst00000638143 | sg00000007541 | pigq-224 | 16 | 575946 | 580922 | + | mRNA | nonsense_mediated_decay |
| -119056 | enst00000637468 | sg00000007541 | pigq-222 | 16 | 574751 | 582893 | + | mRNA | nonsense_mediated_decay |
| -119100 | enst00000636005 | sg00000007541 | pigq-220 | 16 | 574707 | 583334 | + | mRNA | nonsense_mediated_decay |
| -119475 | enst00000635909 | sg00000007541 | pigq-218 | 16 | 574332 | 584083 | + | mRNA | nonsense_mediated_decay |
| -121301 | enst00000443147 | sg00000007541 | pigq-208 | 16 | 572506 | 583095 | + | mRNA | nonsense_mediated_decay |
| 121421 | enst00000655150 | sg00000287855 | al023882.1-201 | 16 | 817489 | 862843 | + | lnc_RNA | lncrna |
| -123506 | enst00000637701 | sg00000007541 | pigq-223 | 16 | 570301 | 570658 | + | lnc_RNA | processed_transcript |
| -123745 | enst00000470411 | sg00000007541 | pigq-209 | 16 | 570062 | 577217 | + | mRNA | protein_coding |
| -123789 | enst00000026218 | sg00000007541 | pigq-201 | 16 | 570018 | 584109 | + | mRNA | protein_coding |
| -123826 | enst00000636657 | sg00000007541 | pigq-221 | 16 | 569981 | 584094 | + | mRNA | nonsense_mediated_decay |
| -123831 | enst00000422307 | sg00000007541 | pigq-206 | 16 | 569976 | 577234 | + | mRNA | protein_coding |
| -123839 | enst00000439574 | sg00000007541 | pigq-207 | 16 | 569968 | 574409 | + | mRNA | protein_coding |
| -123860 | enst00000321878 | sg00000007541 | pigq-203 | 16 | 569947 | 584136 | + | mRNA | protein_coding |
| -124346 | enst00000635107 | sg00000282907 | z98883.1-202 | 16 | 569461 | 576257 | + | lnc_RNA | lncrna |
| -124970 | enst00000409439 | sg00000282907 | z98883.1-201 | 16 | 568837 | 575903 | + | lnc_RNA | lncrna |
| -126798 | enst00000409527 | sg00000007541 | pigq-204 | 16 | 567009 | 583035 | + | mRNA | protein_coding |
| -126802 | enst00000540585 | sg00000257108 | nhlrc4-202 | 16 | 567005 | 569495 | + | mRNA | protein_coding |
| -126802 | enst00000424439 | sg00000257108 | nhlrc4-201 | 16 | 567005 | 569495 | + | mRNA | protein_coding |
| -126812 | enst00000293874 | sg00000007541 | pigq-202 | 16 | 566995 | 574519 | + | mRNA | protein_coding |
| -133413 | enst00000409413 | sg00000161992 | prr35-201 | 16 | 560394 | 565529 | + | mRNA | protein_coding |
| -139960 | enst00000565879 | sg00000261691 | z97986.1-201 | 16 | 547185 | 553847 | - | lnc_RNA | lncrna |
| -141052 | enst00000566977 | sg00000103326 | capn15-204 | 16 | 552755 | 554636 | + | mRNA | protein_coding |
| -141510 | enst00000565010 | sg00000103326 | capn15-203 | 16 | 552297 | 554636 | + | lnc_RNA | retained_intron |
| -150530 | enst00000582210 | sg00000266235 | mir3176-201 | 16 | 543277 | 543366 | + | miRNA | mirna |
| 152997 | enst00000619963 | sg00000275438 | al031008.1-201 | 16 | 848525 | 849065 | - | lnc_RNA | lncrna |
| -153702 | enst00000637507 | sg00000103326 | capn15-208 | 16 | 540105 | 548031 | + | mRNA | protein_coding |
| -156945 | enst00000568402 | sg00000103326 | capn15-206 | 16 | 536862 | 537639 | + | lnc_RNA | processed_transcript |
| -158491 | enst00000581803 | sg00000266124 | mir5587-201 | 16 | 535316 | 535368 | + | miRNA | mirna |
| 159880 | enst00000611669 | sg00000103227 | lmf1-217 | 16 | 854501 | 855948 | - | lnc_RNA | retained_intron |
| -165984 | enst00000568988 | sg00000103326 | capn15-207 | 16 | 527823 | 548209 | + | mRNA | protein_coding |
| -166059 | enst00000567216 | sg00000103326 | capn15-205 | 16 | 527748 | 539858 | + | lnc_RNA | processed_transcript |
| -166090 | enst00000562370 | sg00000103326 | capn15-202 | 16 | 527717 | 547392 | + | mRNA | protein_coding |
| -166095 | enst00000219611 | sg00000103326 | capn15-201 | 16 | 527712 | 554636 | + | mRNA | protein_coding |
| -166400 | enst00000622160 | sg00000277142 | linc00235-201 | 16 | 525155 | 527407 | - | lnc_RNA | lncrna |
| 172900 | enst00000565276 | sg00000103227 | lmf1-207 | 16 | 854500 | 868968 | - | mRNA | nonsense_mediated_decay |
| 174681 | enst00000570168 | sg00000103227 | lmf1-216 | 16 | 869180 | 870749 | - | lnc_RNA | processed_transcript |
| 177792 | enst00000569516 | sg00000103227 | lmf1-214 | 16 | 854500 | 873860 | - | lnc_RNA | retained_intron |
| -183244 | enst00000464263 | sg00000090565 | rab11fip3-208 | 16 | 510563 | 519762 | + | lnc_RNA | retained_intron |
| -183354 | enst00000461009 | sg00000090565 | rab11fip3-207 | 16 | 510453 | 519108 | + | lnc_RNA | retained_intron |
| 187712 | enst00000569106 | sg00000260022 | al031716.1-201 | 16 | 883780 | 885090 | + | lnc_RNA | lncrna |
| -191057 | enst00000487899 | sg00000090565 | rab11fip3-210 | 16 | 502750 | 519018 | + | lnc_RNA | retained_intron |
| 191063 | enst00000568268 | sg00000103227 | lmf1-211 | 16 | 870833 | 887131 | - | lnc_RNA | processed_transcript |
| 197184 | enst00000565198 | sg00000103227 | lmf1-206 | 16 | 870874 | 893252 | - | lnc_RNA | retained_intron |
| -204865 | enst00000495663 | sg00000090565 | rab11fip3-211 | 16 | 488942 | 497158 | + | lnc_RNA | retained_intron |
| 209156 | enst00000564460 | sg00000260316 | al008727.1-201 | 16 | 898967 | 905224 | - | lnc_RNA | lncrna |
| -211150 | enst00000412256 | sg00000090565 | rab11fip3-202 | 16 | 482657 | 497448 | + | mRNA | protein_coding |
| -218883 | enst00000449879 | sg00000090565 | rab11fip3-204 | 16 | 474924 | 503063 | + | mRNA | protein_coding |
| -218883 | enst00000483002 | sg00000090565 | rab11fip3-209 | 16 | 474924 | 489101 | + | lnc_RNA | retained_intron |
| -218938 | enst00000452814 | sg00000090565 | rab11fip3-206 | 16 | 474869 | 505605 | + | mRNA | protein_coding |
| -218957 | enst00000450428 | sg00000090565 | rab11fip3-205 | 16 | 474850 | 522478 | + | mRNA | protein_coding |
| 224965 | enst00000567820 | sg00000260439 | lmf1-as1-201 | 16 | 921033 | 934266 | + | lnc_RNA | lncrna |
| 225005 | enst00000569574 | sg00000260439 | lmf1-as1-202 | 16 | 921073 | 934495 | + | lnc_RNA | lncrna |
| -242403 | enst00000430231 | sg00000230428 | al049542.2-201 | 16 | 451404 | 453461 | + | pseudogenic_transcript | transcribed_unprocessed_pseudogene |
| 251576 | enst00000566627 | sg00000103227 | lmf1-209 | 16 | 871287 | 947644 | - | mRNA | protein_coding |
| -254410 | enst00000364164 | sg00000201034 | al049542.1-201 | 16 | 439297 | 439397 | - | ncRNA | misc_rna |
| -267428 | enst00000434585 | sg00000090565 | rab11fip3-203 | 16 | 426379 | 522355 | + | mRNA | protein_coding |
| 268054 | enst00000562380 | sg00000103227 | lmf1-205 | 16 | 910980 | 964122 | - | mRNA | protein_coding |
| -268158 | enst00000262305 | sg00000090565 | rab11fip3-201 | 16 | 425649 | 523011 | + | mRNA | protein_coding |
| -269264 | enst00000621088 | sg00000276984 | al023881.1-201 | 16 | 424243 | 424543 | - | lnc_RNA | lncrna |
| 272944 | enst00000620075 | sg00000276931 | ac009041.3-201 | 16 | 968375 | 969012 | - | lnc_RNA | lncrna |
| 274798 | enst00000568897 | sg00000103227 | lmf1-212 | 16 | 854512 | 970866 | - | mRNA | protein_coding |
| 274842 | enst00000567595 | sg00000103227 | lmf1-210 | 16 | 911016 | 970910 | - | mRNA | nonsense_mediated_decay |
| 274892 | enst00000543238 | sg00000103227 | lmf1-202 | 16 | 853643 | 970960 | - | mRNA | protein_coding |
| 274895 | enst00000568964 | sg00000103227 | lmf1-213 | 16 | 881419 | 970963 | - | mRNA | nonsense_mediated_decay |
| 274914 | enst00000562226 | sg00000103227 | lmf1-204 | 16 | 879688 | 970982 | - | mRNA | nonsense_mediated_decay |
| 274914 | enst00000566609 | sg00000103227 | lmf1-208 | 16 | 952575 | 970982 | - | lnc_RNA | processed_transcript |
| 274931 | enst00000262301 | sg00000103227 | lmf1-201 | 16 | 853634 | 970999 | - | mRNA | protein_coding |
| 280844 | enst00000567961 | sg00000260807 | cerox1-207 | 16 | 975761 | 976912 | - | lnc_RNA | lncrna |
| 280858 | enst00000565139 | sg00000260807 | cerox1-205 | 16 | 975761 | 976926 | - | lnc_RNA | lncrna |
| 283580 | enst00000662104 | sg00000260807 | cerox1-210 | 16 | 976084 | 979648 | - | lnc_RNA | lncrna |
| -283695 | enst00000469922 | sg00000242612 | decr2-211 | 16 | 410112 | 411050 | + | lnc_RNA | retained_intron |
| 284164 | enst00000655952 | sg00000260807 | cerox1-209 | 16 | 976154 | 980232 | - | lnc_RNA | lncrna |
| 284172 | enst00000669274 | sg00000260807 | cerox1-211 | 16 | 976154 | 980240 | - | lnc_RNA | lncrna |
| -284208 | enst00000461749 | sg00000242612 | decr2-207 | 16 | 409599 | 412481 | + | lnc_RNA | retained_intron |
| 284845 | enst00000562570 | sg00000260807 | cerox1-201 | 16 | 975761 | 980913 | - | lnc_RNA | lncrna |
| 285225 | enst00000563837 | sg00000260807 | cerox1-202 | 16 | 976787 | 981293 | - | lnc_RNA | lncrna |
| 285229 | enst00000570014 | sg00000103227 | lmf1-215 | 16 | 871317 | 981297 | - | mRNA | protein_coding |
| 285230 | enst00000563863 | sg00000260807 | cerox1-203 | 16 | 975764 | 981298 | - | lnc_RNA | lncrna |
| 285230 | enst00000565069 | sg00000260807 | cerox1-204 | 16 | 976521 | 981298 | - | lnc_RNA | lncrna |
| 285250 | enst00000545827 | sg00000103227 | lmf1-203 | 16 | 853638 | 981318 | - | mRNA | nonsense_mediated_decay |
| 285522 | enst00000568394 | sg00000260807 | cerox1-208 | 16 | 975761 | 981590 | - | lnc_RNA | lncrna |
| 285528 | enst00000565467 | sg00000260807 | cerox1-206 | 16 | 975761 | 981596 | - | lnc_RNA | lncrna |
| 285702 | enst00000293894 | sg00000005513 | sox8-201 | 16 | 981770 | 986979 | + | mRNA | protein_coding |
| 286018 | enst00000566034 | sg00000005513 | sox8-202 | 16 | 982086 | 986978 | + | lnc_RNA | retained_intron |
| -286380 | enst00000429116 | sg00000242612 | decr2-203 | 16 | 407427 | 411928 | + | mRNA | nonsense_mediated_decay |
| -286861 | enst00000465166 | sg00000242612 | decr2-210 | 16 | 406946 | 410295 | + | lnc_RNA | retained_intron |
| -286912 | enst00000461947 | sg00000242612 | decr2-209 | 16 | 406895 | 412487 | + | lnc_RNA | processed_transcript |
| -287103 | enst00000632744 | sg00000242612 | decr2-214 | 16 | 406704 | 407433 | + | lnc_RNA | processed_transcript |
| -291802 | enst00000461802 | sg00000242612 | decr2-208 | 16 | 402005 | 407171 | + | lnc_RNA | processed_transcript |
| -291846 | enst00000633025 | sg00000242612 | decr2-215 | 16 | 401961 | 407531 | + | mRNA | nonsense_mediated_decay |
| -291881 | enst00000445291 | sg00000242612 | decr2-206 | 16 | 401926 | 411471 | + | mRNA | nonsense_mediated_decay |
| -291890 | enst00000633348 | sg00000242612 | decr2-216 | 16 | 401917 | 411076 | + | mRNA | protein_coding |
| -291892 | enst00000437024 | sg00000242612 | decr2-204 | 16 | 401915 | 412487 | + | mRNA | nonsense_mediated_decay |
| -291914 | enst00000439661 | sg00000242612 | decr2-205 | 16 | 401893 | 412370 | + | mRNA | nonsense_mediated_decay |
| -291922 | enst00000631605 | sg00000242612 | decr2-213 | 16 | 401885 | 407069 | + | mRNA | nonsense_mediated_decay |
| -291922 | enst00000219481 | sg00000242612 | decr2-201 | 16 | 401885 | 412482 | + | mRNA | protein_coding |
| -291924 | enst00000633923 | sg00000242612 | decr2-217 | 16 | 401883 | 410306 | + | mRNA | protein_coding |
| -291925 | enst00000424398 | sg00000242612 | decr2-202 | 16 | 401882 | 411976 | + | mRNA | protein_coding |
| -291949 | enst00000627716 | sg00000242612 | decr2-212 | 16 | 401858 | 406729 | + | mRNA | protein_coding |
| -295397 | enst00000468031 | sg00000103202 | nme4-210 | 16 | 398410 | 400749 | + | lnc_RNA | retained_intron |
| -296065 | enst00000450036 | sg00000103202 | nme4-207 | 16 | 397742 | 400416 | + | mRNA | protein_coding |
| -296570 | enst00000433358 | sg00000103202 | nme4-204 | 16 | 397237 | 400648 | + | mRNA | protein_coding |
| -296598 | enst00000382940 | sg00000103202 | nme4-202 | 16 | 397209 | 400506 | + | mRNA | protein_coding |
| -296599 | enst00000460297 | sg00000103202 | nme4-209 | 16 | 397208 | 400633 | + | lnc_RNA | retained_intron |
| -296607 | enst00000444498 | sg00000103202 | nme4-205 | 16 | 397200 | 410367 | + | mRNA | nonsense_mediated_decay |
| -296608 | enst00000219479 | sg00000103202 | nme4-201 | 16 | 397199 | 400754 | + | mRNA | protein_coding |
| -296608 | enst00000448828 | sg00000103202 | nme4-206 | 16 | 397199 | 400734 | + | mRNA | nonsense_mediated_decay |
| -296615 | enst00000620944 | sg00000103202 | nme4-211 | 16 | 397192 | 400753 | + | mRNA | protein_coding |
| -296615 | enst00000621774 | sg00000103202 | nme4-212 | 16 | 397192 | 400753 | + | mRNA | protein_coding |
| -297038 | enst00000454619 | sg00000103202 | nme4-208 | 16 | 396769 | 399474 | + | mRNA | protein_coding |
| -297082 | enst00000397722 | sg00000103202 | nme4-203 | 16 | 396725 | 400746 | + | mRNA | protein_coding |
| 301839 | enst00000565401 | sg00000260496 | ac009041.1-201 | 16 | 996319 | 997907 | - | lnc_RNA | lncrna |
| 304858 | enst00000599946 | sg00000260496 | ac009041.1-202 | 16 | 991151 | 1000926 | - | lnc_RNA | lncrna |
| -306694 | enst00000476735 | sg00000129925 | pgap6-208 | 16 | 377108 | 387113 | - | lnc_RNA | processed_transcript |
| -306808 | enst00000427313 | sg00000129925 | pgap6-203 | 16 | 376806 | 386999 | - | mRNA | protein_coding |
| -307044 | enst00000435229 | sg00000236829 | z97634.1-203 | 16 | 386763 | 387233 | + | pseudogenic_transcript | transcribed_processed_pseudogene |
| -311657 | enst00000457760 | sg00000236829 | z97634.1-202 | 16 | 382150 | 387242 | + | lnc_RNA | processed_transcript |
| -311710 | enst00000412293 | sg00000236829 | z97634.1-201 | 16 | 382097 | 392960 | + | lnc_RNA | processed_transcript |
| -311829 | enst00000250930 | sg00000129925 | pgap6-201 | 16 | 371864 | 381978 | - | mRNA | protein_coding |
| -311829 | enst00000431232 | sg00000129925 | pgap6-204 | 16 | 370788 | 381978 | - | mRNA | protein_coding |
| -317332 | enst00000475348 | sg00000129925 | pgap6-207 | 16 | 374809 | 376475 | - | lnc_RNA | retained_intron |
| -318592 | enst00000448854 | sg00000129925 | pgap6-205 | 16 | 372416 | 375215 | - | mRNA | protein_coding |
| -318732 | enst00000467452 | sg00000129925 | pgap6-206 | 16 | 374005 | 375075 | - | lnc_RNA | retained_intron |
| -318956 | enst00000424078 | sg00000129925 | pgap6-202 | 16 | 371862 | 374851 | - | mRNA | protein_coding |
| -322518 | enst00000648346 | sg00000086504 | mrpl28-211 | 16 | 366969 | 371289 | - | mRNA | protein_coding |
| -323269 | enst00000199706 | sg00000086504 | mrpl28-201 | 16 | 366969 | 370538 | - | mRNA | protein_coding |
| -323281 | enst00000481453 | sg00000086504 | mrpl28-209 | 16 | 367394 | 370526 | - | lnc_RNA | retained_intron |
| -323298 | enst00000389675 | sg00000086504 | mrpl28-202 | 16 | 367613 | 370509 | - | mRNA | protein_coding |
| -323298 | enst00000483764 | sg00000086504 | mrpl28-210 | 16 | 367384 | 370509 | - | lnc_RNA | retained_intron |
| -323305 | enst00000447696 | sg00000086504 | mrpl28-205 | 16 | 368335 | 370502 | - | mRNA | protein_coding |
| -323375 | enst00000441883 | sg00000086504 | mrpl28-204 | 16 | 367724 | 370432 | - | mRNA | protein_coding |
| -323469 | enst00000450882 | sg00000086504 | mrpl28-206 | 16 | 368408 | 370338 | - | mRNA | protein_coding |
| -323573 | enst00000469744 | sg00000086504 | mrpl28-208 | 16 | 367427 | 370234 | - | lnc_RNA | retained_intron |
| -323582 | enst00000461550 | sg00000086504 | mrpl28-207 | 16 | 367398 | 370225 | - | lnc_RNA | retained_intron |
| -324004 | enst00000429738 | sg00000086504 | mrpl28-203 | 16 | 367396 | 369803 | - | mRNA | protein_coding |
| -341084 | enst00000262320 | sg00000103126 | axin1-201 | 16 | 287440 | 352723 | - | mRNA | protein_coding |
| -341134 | enst00000481769 | sg00000103126 | axin1-205 | 16 | 297844 | 352673 | - | lnc_RNA | processed_transcript |
| -341358 | enst00000354866 | sg00000103126 | axin1-202 | 16 | 287441 | 352449 | - | mRNA | protein_coding |
| -347485 | enst00000461023 | sg00000103126 | axin1-204 | 16 | 287440 | 346322 | - | lnc_RNA | retained_intron |
| 369172 | enst00000564390 | sg00000261720 | ac009041.2-201 | 16 | 1065240 | 1066502 | + | lnc_RNA | lncrna |
| 371168 | enst00000569734 | sg00000261713 | sstr5-as1-203 | 16 | 1066376 | 1067236 | - | lnc_RNA | lncrna |
| 377535 | enst00000565992 | sg00000261713 | sstr5-as1-201 | 16 | 1066248 | 1073603 | - | lnc_RNA | lncrna |
| 382605 | enst00000569832 | sg00000261713 | sstr5-as1-204 | 16 | 1064093 | 1078673 | - | lnc_RNA | lncrna |
| 382639 | enst00000566499 | sg00000261713 | sstr5-as1-202 | 16 | 1066494 | 1078707 | - | lnc_RNA | lncrna |
| 382663 | enst00000624643 | sg00000261713 | sstr5-as1-205 | 16 | 1077722 | 1078731 | - | unconfirmed_transcript | tec |
| 382713 | enst00000293897 | sg00000162009 | sstr5-201 | 16 | 1078781 | 1080142 | + | mRNA | protein_coding |
| 399579 | enst00000621771 | sg00000184471 | c1qtnf8-202 | 16 | 1090517 | 1095647 | - | mRNA | protein_coding |
| 400176 | enst00000328449 | sg00000184471 | c1qtnf8-201 | 16 | 1088226 | 1096244 | - | mRNA | protein_coding |
| -400271 | enst00000457798 | sg00000103126 | axin1-203 | 16 | 288190 | 293536 | - | mRNA | protein_coding |
| -408127 | enst00000435833 | sg00000185615 | pdia2-203 | 16 | 285680 | 287215 | + | mRNA | protein_coding |
| -408932 | enst00000462950 | sg00000185615 | pdia2-205 | 16 | 284875 | 285576 | + | lnc_RNA | processed_transcript |
| 409393 | enst00000564813 | sg00000260702 | al031713.1-201 | 16 | 1101260 | 1105461 | - | pseudogenic_transcript | unprocessed_pseudogene |
| -409655 | enst00000482665 | sg00000185615 | pdia2-207 | 16 | 284152 | 287208 | + | lnc_RNA | retained_intron |
| -410627 | enst00000456379 | sg00000185615 | pdia2-204 | 16 | 283180 | 285140 | + | mRNA | protein_coding |
| -410642 | enst00000404312 | sg00000185615 | pdia2-202 | 16 | 283165 | 287114 | + | mRNA | protein_coding |
| -410643 | enst00000467212 | sg00000185615 | pdia2-206 | 16 | 283164 | 287214 | + | lnc_RNA | retained_intron |
| -410655 | enst00000219406 | sg00000185615 | pdia2-201 | 16 | 283152 | 287215 | + | mRNA | protein_coding |
| -412725 | enst00000477621 | sg00000242173 | arhgdig-204 | 16 | 281082 | 282840 | + | lnc_RNA | retained_intron |
| -412952 | enst00000414650 | sg00000242173 | arhgdig-202 | 16 | 280855 | 282810 | + | mRNA | protein_coding |
| -413216 | enst00000219409 | sg00000242173 | arhgdig-201 | 16 | 280591 | 283010 | + | mRNA | protein_coding |
| -413357 | enst00000447871 | sg00000242173 | arhgdig-203 | 16 | 280450 | 282688 | + | mRNA | protein_coding |
| 415559 | enst00000561511 | sg00000260532 | al031598.1-201 | 16 | 1111627 | 1113399 | + | lnc_RNA | lncrna |
| -417827 | enst00000493449 | sg00000076344 | rgs11-208 | 16 | 271827 | 275980 | - | lnc_RNA | retained_intron |
| -417863 | enst00000397770 | sg00000076344 | rgs11-204 | 16 | 268307 | 275944 | - | mRNA | protein_coding |
| -417867 | enst00000168869 | sg00000076344 | rgs11-201 | 16 | 268301 | 275940 | - | mRNA | nonsense_mediated_decay |
| -417893 | enst00000316163 | sg00000076344 | rgs11-202 | 16 | 268311 | 275914 | - | mRNA | protein_coding |
| -417896 | enst00000359740 | sg00000076344 | rgs11-203 | 16 | 269269 | 275911 | - | mRNA | protein_coding |
| -418240 | enst00000472466 | sg00000076344 | rgs11-205 | 16 | 274939 | 275567 | - | lnc_RNA | retained_intron |
| -418851 | enst00000477143 | sg00000076344 | rgs11-206 | 16 | 268319 | 274956 | - | lnc_RNA | retained_intron |
| -419534 | enst00000481672 | sg00000076344 | rgs11-207 | 16 | 270647 | 274273 | - | lnc_RNA | retained_intron |
| -425080 | enst00000412541 | sg00000286901 | z69667.1-202 | 16 | 268727 | 282084 | + | lnc_RNA | lncrna |
| -425080 | enst00000435035 | sg00000286901 | z69667.1-201 | 16 | 268727 | 282084 | + | lnc_RNA | lncrna |
| -431299 | enst00000424016 | sg00000167930 | fam234a-209 | 16 | 262508 | 265090 | + | mRNA | protein_coding |
| -432602 | enst00000468354 | sg00000167930 | fam234a-215 | 16 | 261205 | 262244 | + | lnc_RNA | retained_intron |
| -439179 | enst00000421000 | sg00000167930 | fam234a-208 | 16 | 254628 | 260788 | + | mRNA | protein_coding |
| -439685 | enst00000496874 | sg00000167930 | fam234a-216 | 16 | 254122 | 259520 | + | lnc_RNA | retained_intron |
| -444260 | enst00000600536 | sg00000167930 | fam234a-217 | 16 | 249547 | 269943 | + | mRNA | nonsense_mediated_decay |
| 452686 | enst00000614275 | sg00000273551 | ac120498.8-201 | 16 | 1148224 | 1148754 | - | lnc_RNA | lncrna |
| -453619 | enst00000417499 | sg00000167930 | fam234a-204 | 16 | 240188 | 254619 | + | mRNA | protein_coding |
| 457038 | enst00000348261 | sg00000196557 | cacna1h-201 | 16 | 1153106 | 1221768 | + | mRNA | protein_coding |
| 457173 | enst00000640028 | sg00000196557 | cacna1h-212 | 16 | 1153241 | 1221771 | + | mRNA | nonsense_mediated_decay |
| 457173 | enst00000639478 | sg00000196557 | cacna1h-211 | 16 | 1153241 | 1221771 | + | mRNA | nonsense_mediated_decay |
| 457173 | enst00000638323 | sg00000196557 | cacna1h-210 | 16 | 1153241 | 1221771 | + | mRNA | protein_coding |
| 457173 | enst00000358590 | sg00000196557 | cacna1h-202 | 16 | 1153241 | 1221771 | + | mRNA | protein_coding |
| 457670 | enst00000565831 | sg00000196557 | cacna1h-206 | 16 | 1153738 | 1221765 | + | mRNA | protein_coding |
| -458960 | enst00000420500 | sg00000167930 | fam234a-207 | 16 | 234847 | 260009 | + | mRNA | protein_coding |
| -458961 | enst00000301678 | sg00000167930 | fam234a-201 | 16 | 234846 | 266120 | + | mRNA | protein_coding |
| -458963 | enst00000420046 | sg00000167930 | fam234a-206 | 16 | 234844 | 261505 | + | mRNA | protein_coding |
| -458969 | enst00000449945 | sg00000167930 | fam234a-213 | 16 | 234838 | 262139 | + | mRNA | protein_coding |
| -458973 | enst00000453430 | sg00000167930 | fam234a-214 | 16 | 234834 | 261514 | + | mRNA | protein_coding |
| -458977 | enst00000447499 | sg00000167930 | fam234a-212 | 16 | 234830 | 254674 | + | mRNA | protein_coding |
| -458978 | enst00000438220 | sg00000167930 | fam234a-211 | 16 | 234829 | 260003 | + | mRNA | protein_coding |
| -458980 | enst00000426695 | sg00000167930 | fam234a-210 | 16 | 234827 | 254565 | + | mRNA | protein_coding |
| -458986 | enst00000399932 | sg00000167930 | fam234a-203 | 16 | 234821 | 266096 | + | mRNA | protein_coding |
| -458989 | enst00000419173 | sg00000167930 | fam234a-205 | 16 | 234818 | 259521 | + | mRNA | protein_coding |
| -459005 | enst00000659283 | sg00000167930 | fam234a-220 | 16 | 234802 | 272183 | + | mRNA | nonsense_mediated_decay |
| -459005 | enst00000654053 | sg00000167930 | fam234a-219 | 16 | 234802 | 269898 | + | mRNA | nonsense_mediated_decay |
| -459286 | enst00000653392 | sg00000167930 | fam234a-218 | 16 | 234521 | 269836 | + | mRNA | nonsense_mediated_decay |
| -459286 | enst00000301679 | sg00000167930 | fam234a-202 | 16 | 234521 | 270080 | + | mRNA | protein_coding |
| -459286 | enst00000666018 | sg00000167930 | fam234a-221 | 16 | 234521 | 269955 | + | mRNA | nonsense_mediated_decay |
| 461906 | enst00000568884 | sg00000260403 | ac120498.3-201 | 16 | 1156976 | 1157974 | - | lnc_RNA | lncrna |
| -462673 | enst00000382990 | sg00000206168 | z69890.1-201 | 16 | 231134 | 231472 | + | pseudogenic_transcript | processed_pseudogene |
| 464108 | enst00000563593 | sg00000259910 | ac120498.1-201 | 16 | 1159548 | 1160176 | - | lnc_RNA | lncrna |
| -464344 | enst00000397783 | sg00000007392 | luc7l-204 | 16 | 188971 | 229463 | - | mRNA | protein_coding |
| -464344 | enst00000337351 | sg00000007392 | luc7l-202 | 16 | 188969 | 229463 | - | mRNA | protein_coding |
| -464356 | enst00000490762 | sg00000007392 | luc7l-217 | 16 | 188990 | 229451 | - | lnc_RNA | retained_intron |
| -464357 | enst00000293872 | sg00000007392 | luc7l-201 | 16 | 188969 | 229450 | - | mRNA | protein_coding |
| -464357 | enst00000629543 | sg00000007392 | luc7l-221 | 16 | 188975 | 229450 | - | mRNA | protein_coding |
| -464368 | enst00000426094 | sg00000007392 | luc7l-207 | 16 | 188969 | 229439 | - | mRNA | nonsense_mediated_decay |
| -464373 | enst00000419516 | sg00000007392 | luc7l-206 | 16 | 189896 | 229434 | - | mRNA | nonsense_mediated_decay |
| -464385 | enst00000430864 | sg00000007392 | luc7l-210 | 16 | 190541 | 229422 | - | mRNA | protein_coding |
| -464433 | enst00000418978 | sg00000007392 | luc7l-205 | 16 | 190122 | 229374 | - | mRNA | nonsense_mediated_decay |
| -464467 | enst00000494545 | sg00000007392 | luc7l-219 | 16 | 228229 | 229340 | - | lnc_RNA | retained_intron |
| -464665 | enst00000494366 | sg00000007392 | luc7l-218 | 16 | 208633 | 229142 | - | lnc_RNA | processed_transcript |
| -464817 | enst00000467552 | sg00000007392 | luc7l-214 | 16 | 228124 | 228990 | - | lnc_RNA | retained_intron |
| -465085 | enst00000428363 | sg00000007392 | luc7l-208 | 16 | 220649 | 228722 | - | mRNA | protein_coding |
| -466121 | enst00000397780 | sg00000007392 | luc7l-203 | 16 | 189896 | 227686 | - | mRNA | protein_coding |
| -466151 | enst00000443357 | sg00000007392 | luc7l-212 | 16 | 206004 | 227656 | - | mRNA | protein_coding |
| -466193 | enst00000469109 | sg00000007392 | luc7l-216 | 16 | 220171 | 227614 | - | lnc_RNA | retained_intron |
| -484034 | enst00000464711 | sg00000007392 | luc7l-213 | 16 | 189098 | 209773 | - | lnc_RNA | retained_intron |
| -485299 | enst00000495349 | sg00000007392 | luc7l-220 | 16 | 190001 | 208508 | - | lnc_RNA | retained_intron |
| -487720 | enst00000429378 | sg00000007392 | luc7l-209 | 16 | 188990 | 206087 | - | mRNA | protein_coding |
| 498961 | enst00000564954 | sg00000196557 | cacna1h-205 | 16 | 1195029 | 1198934 | + | lnc_RNA | retained_intron |
Source file: /hps/research1/birney/users/adrien/analyses/cancer_DNA_promethion/run_1_2_3_4/DNA_pipeline_2/results/methylation/pycometh_meth_comp_CGI_3/out.tsv.gz
MD5 hash: 9aa0e3f69cb4e12345c3758eb68a5efc