CpG interval report generated on 20/05/20 with pycoMeth 0.4.6

Interval details
pvalue rank chromosome start end length number of samples number of CpGs pvalue adjusted pvalue
#11 17 72116370 72118672 2302 3 67 5.90379e-29 5.33756e-26
Methylation log-likelihood ratio by CpG position
Distribution of CpG methylation log-likelihood ratio by sample
Closest transcripts TSS
distance to tss transcript id gene id transcript name chromosome start end strand feature type transcript biotype
0 enst00000653248 sg00000234899 sox9-as1-220 17 72071057 72118432 - lnc_RNA lncrna
0 enst00000653391 sg00000234899 sox9-as1-221 17 72071042 72118299 - lnc_RNA lncrna
-354 enst00000434703 sg00000234899 sox9-as1-204 17 72071043 72116016 - lnc_RNA lncrna
776 enst00000440093 sg00000234899 sox9-as1-205 17 72071043 72119448 - lnc_RNA lncrna
786 enst00000662298 sg00000234899 sox9-as1-231 17 72075914 72119458 - lnc_RNA lncrna
821 enst00000529667 sg00000234899 sox9-as1-208 17 72071042 72119493 - lnc_RNA lncrna
851 enst00000533179 sg00000234899 sox9-as1-211 17 72090755 72119523 - lnc_RNA lncrna
1453 enst00000656124 sg00000234899 sox9-as1-224 17 72071042 72120125 - lnc_RNA lncrna
2112 enst00000671151 sg00000234899 sox9-as1-239 17 72075827 72120784 - lnc_RNA lncrna
2114 enst00000659228 sg00000234899 sox9-as1-228 17 72071057 72120786 - lnc_RNA lncrna
2121 enst00000533232 sg00000234899 sox9-as1-212 17 72079938 72120793 - lnc_RNA retained_intron
2122 enst00000670181 sg00000234899 sox9-as1-238 17 72080441 72120794 - lnc_RNA lncrna
2123 enst00000668847 sg00000234899 sox9-as1-236 17 72071052 72120795 - lnc_RNA lncrna
2123 enst00000659146 sg00000234899 sox9-as1-227 17 72087743 72120795 - lnc_RNA lncrna
2123 enst00000655689 sg00000234899 sox9-as1-223 17 72071042 72120795 - lnc_RNA lncrna
2126 enst00000668902 sg00000234899 sox9-as1-237 17 72075827 72120798 - lnc_RNA lncrna
2133 enst00000662263 sg00000234899 sox9-as1-230 17 72067099 72120805 - lnc_RNA lncrna
2135 enst00000656392 sg00000234899 sox9-as1-225 17 72075914 72120807 - lnc_RNA lncrna
2135 enst00000655414 sg00000234899 sox9-as1-222 17 72071044 72120807 - lnc_RNA lncrna
2138 enst00000659599 sg00000234899 sox9-as1-229 17 72075827 72120810 - lnc_RNA lncrna
2138 enst00000663438 sg00000234899 sox9-as1-232 17 72075914 72120810 - lnc_RNA lncrna
2138 enst00000668782 sg00000234899 sox9-as1-235 17 72079933 72120810 - lnc_RNA lncrna
2138 enst00000657467 sg00000234899 sox9-as1-226 17 72071042 72120810 - lnc_RNA lncrna
2348 enst00000245479 sg00000125398 sox9-201 17 72121020 72126416 + mRNA protein_coding
-4667 enst00000602213 sg00000234899 sox9-as1-216 17 72040714 72111703 - lnc_RNA lncrna
-5646 enst00000443037 sg00000234899 sox9-as1-206 17 72110178 72110724 - lnc_RNA lncrna
-5822 enst00000446332 sg00000234899 sox9-as1-207 17 72090821 72110548 - lnc_RNA lncrna
23108 enst00000414600 sg00000234899 sox9-as1-202 17 72090459 72141780 - lnc_RNA lncrna
-27022 enst00000654175 sg00000226101 linc02097-202 17 72089348 72100207 + lnc_RNA lncrna
-27041 enst00000665568 sg00000226101 linc02097-203 17 72089329 72103035 + lnc_RNA lncrna
-27158 enst00000664713 sg00000234899 sox9-as1-233 17 72071042 72089212 - lnc_RNA lncrna
-27192 enst00000666904 sg00000234899 sox9-as1-234 17 72075824 72089178 - lnc_RNA lncrna
-27250 enst00000533039 sg00000234899 sox9-as1-210 17 72081921 72089120 - lnc_RNA lncrna
-27251 enst00000666489 sg00000226101 linc02097-204 17 72089119 72095055 + lnc_RNA lncrna
-30869 enst00000533996 sg00000234899 sox9-as1-213 17 72076486 72085501 - lnc_RNA retained_intron
-44037 enst00000419257 sg00000226101 linc02097-201 17 72072333 72093481 + lnc_RNA lncrna
54911 enst00000628742 sg00000234899 sox9-as1-218 17 72040732 72173583 - lnc_RNA lncrna
-58636 enst00000424417 sg00000234899 sox9-as1-203 17 72040647 72057734 - lnc_RNA lncrna
-58640 enst00000540802 sg00000234899 sox9-as1-214 17 72034107 72057730 - lnc_RNA lncrna
-58651 enst00000412640 sg00000234899 sox9-as1-201 17 72037314 72057719 - lnc_RNA lncrna
-70023 enst00000630770 sg00000234899 sox9-as1-219 17 72040809 72046347 - lnc_RNA lncrna
-82278 enst00000543512 sg00000228639 rocr-202 17 72021851 72034092 - lnc_RNA lncrna
-85673 enst00000656107 sg00000256124 linc01152-205 17 72030697 72038917 + lnc_RNA lncrna
-85769 enst00000655287 sg00000256124 linc01152-204 17 72030601 72039512 + lnc_RNA lncrna
-85787 enst00000430908 sg00000228639 rocr-201 17 72021851 72030583 - lnc_RNA lncrna
-85789 enst00000538810 sg00000256124 linc01152-203 17 72030581 72039595 + lnc_RNA lncrna
-85809 enst00000472655 sg00000256124 linc01152-201 17 72030561 72041310 + lnc_RNA lncrna
-86079 enst00000538693 sg00000256124 linc01152-202 17 72030291 72036316 + lnc_RNA lncrna
102046 enst00000532249 sg00000234899 sox9-as1-209 17 72141386 72220718 - lnc_RNA retained_intron
103164 enst00000588177 sg00000234899 sox9-as1-215 17 72221130 72221836 - lnc_RNA lncrna
118531 enst00000623935 sg00000234899 sox9-as1-217 17 72219946 72237203 - lnc_RNA lncrna
215695 enst00000650211 sg00000227036 linc00511-288 17 72323118 72334367 - lnc_RNA lncrna
220875 enst00000581183 sg00000227036 linc00511-212 17 72323139 72339547 - lnc_RNA lncrna
220889 enst00000648840 sg00000227036 linc00511-247 17 72323134 72339561 - lnc_RNA lncrna
220890 enst00000647611 sg00000227036 linc00511-219 17 72323123 72339562 - lnc_RNA lncrna
220890 enst00000648672 sg00000227036 linc00511-246 17 72323139 72339562 - lnc_RNA lncrna
220890 enst00000650191 sg00000227036 linc00511-286 17 72323158 72339562 - lnc_RNA lncrna
220890 enst00000648203 sg00000227036 linc00511-231 17 72323139 72339562 - lnc_RNA lncrna
220895 enst00000649440 sg00000227036 linc00511-265 17 72323139 72339567 - lnc_RNA lncrna
220896 enst00000647735 sg00000227036 linc00511-222 17 72323158 72339568 - lnc_RNA lncrna
220905 enst00000648104 sg00000227036 linc00511-229 17 72323139 72339577 - lnc_RNA lncrna
220905 enst00000649532 sg00000227036 linc00511-267 17 72323130 72339577 - lnc_RNA lncrna
220905 enst00000649197 sg00000227036 linc00511-254 17 72323134 72339577 - lnc_RNA lncrna
220905 enst00000650289 sg00000227036 linc00511-291 17 72323139 72339577 - lnc_RNA lncrna
220925 enst00000579631 sg00000227036 linc00511-206 17 72323123 72339597 - lnc_RNA lncrna
220930 enst00000580199 sg00000227036 linc00511-208 17 72323118 72339602 - lnc_RNA lncrna
220930 enst00000650194 sg00000227036 linc00511-287 17 72323135 72339602 - lnc_RNA lncrna
221828 enst00000648220 sg00000227036 linc00511-232 17 72324570 72340500 - lnc_RNA lncrna
223884 enst00000649597 sg00000227036 linc00511-270 17 72323158 72342556 - lnc_RNA lncrna
223885 enst00000650083 sg00000227036 linc00511-281 17 72323159 72342557 - lnc_RNA lncrna
223898 enst00000650602 sg00000227036 linc00511-306 17 72323139 72342570 - lnc_RNA lncrna
223906 enst00000648667 sg00000227036 linc00511-245 17 72323165 72342578 - lnc_RNA lncrna
224020 enst00000656431 sg00000264026 linc02003-202 17 72342692 72344529 + lnc_RNA lncrna
224198 enst00000664653 sg00000264026 linc02003-204 17 72342870 72355103 + lnc_RNA lncrna
224229 enst00000663290 sg00000264026 linc02003-203 17 72342901 72353971 + lnc_RNA lncrna
224268 enst00000577573 sg00000264026 linc02003-201 17 72342940 72355136 + lnc_RNA lncrna
230812 enst00000649595 sg00000227036 linc00511-269 17 72323139 72349484 - lnc_RNA lncrna
-244620 enst00000637627 sg00000283517 ac005144.1-201 17 71829870 71871750 - lnc_RNA lncrna
266465 enst00000583460 sg00000227036 linc00511-216 17 72381948 72385137 - lnc_RNA lncrna
288896 enst00000650600 sg00000227036 linc00511-305 17 72404768 72407568 - lnc_RNA lncrna
302552 enst00000580948 sg00000227036 linc00511-211 17 72404660 72421224 - lnc_RNA lncrna
302632 enst00000650313 sg00000227036 linc00511-292 17 72403322 72421304 - lnc_RNA lncrna
302706 enst00000648411 sg00000227036 linc00511-237 17 72403365 72421378 - lnc_RNA lncrna
302715 enst00000649172 sg00000227036 linc00511-253 17 72403327 72421387 - lnc_RNA lncrna
304241 enst00000647652 sg00000227036 linc00511-220 17 72403331 72422913 - lnc_RNA lncrna
304354 enst00000578206 sg00000227036 linc00511-205 17 72403327 72423026 - lnc_RNA lncrna
304375 enst00000650371 sg00000227036 linc00511-294 17 72403322 72423047 - lnc_RNA lncrna
304407 enst00000648297 sg00000227036 linc00511-234 17 72403327 72423079 - lnc_RNA lncrna
304436 enst00000649433 sg00000227036 linc00511-264 17 72403570 72423108 - lnc_RNA lncrna
304516 enst00000650180 sg00000227036 linc00511-285 17 72420678 72423188 - lnc_RNA lncrna
304563 enst00000582712 sg00000227036 linc00511-215 17 72419226 72423235 - lnc_RNA lncrna
307267 enst00000577281 sg00000263680 ac007639.1-201 17 72425939 72428852 + lnc_RNA lncrna
309575 enst00000577773 sg00000227036 linc00511-203 17 72421829 72428247 - lnc_RNA lncrna
312007 enst00000650212 sg00000227036 linc00511-289 17 72403328 72430679 - lnc_RNA lncrna
312931 enst00000650016 sg00000227036 linc00511-278 17 72428267 72431603 - lnc_RNA retained_intron
313504 enst00000650357 sg00000227036 linc00511-293 17 72428267 72432176 - lnc_RNA lncrna
326447 enst00000580500 sg00000227036 linc00511-209 17 72404522 72445119 - lnc_RNA lncrna
347248 enst00000649733 sg00000227036 linc00511-273 17 72403328 72465920 - lnc_RNA lncrna
347950 enst00000650033 sg00000227036 linc00511-279 17 72462857 72466622 - lnc_RNA retained_intron
350946 enst00000584749 sg00000227036 linc00511-217 17 72428267 72469618 - lnc_RNA lncrna
351694 enst00000650051 sg00000227036 linc00511-280 17 72403343 72470366 - lnc_RNA lncrna
351700 enst00000648401 sg00000227036 linc00511-235 17 72403327 72470372 - lnc_RNA lncrna
351796 enst00000649647 sg00000227036 linc00511-272 17 72403327 72470468 - lnc_RNA lncrna
351911 enst00000649881 sg00000227036 linc00511-276 17 72403327 72470583 - lnc_RNA lncrna
364381 enst00000457958 sg00000227036 linc00511-202 17 72403327 72483053 - lnc_RNA lncrna
369643 enst00000650499 sg00000227036 linc00511-300 17 72428267 72488315 - lnc_RNA lncrna
370122 enst00000650121 sg00000227036 linc00511-282 17 72428267 72488794 - lnc_RNA lncrna
370125 enst00000580175 sg00000227036 linc00511-207 17 72428267 72488797 - lnc_RNA lncrna
-372902 enst00000670823 sg00000286387 ac007432.1-201 17 71678899 71743468 - lnc_RNA lncrna
383008 enst00000577828 sg00000227036 linc00511-204 17 72404558 72501680 - lnc_RNA lncrna
383172 enst00000650483 sg00000227036 linc00511-299 17 72403322 72501844 - lnc_RNA lncrna
383174 enst00000648500 sg00000227036 linc00511-239 17 72428267 72501846 - lnc_RNA lncrna
383184 enst00000648907 sg00000227036 linc00511-248 17 72323144 72501856 - lnc_RNA lncrna
383636 enst00000647850 sg00000227036 linc00511-223 17 72428267 72502308 - lnc_RNA lncrna
383662 enst00000649269 sg00000227036 linc00511-256 17 72404558 72502334 - lnc_RNA lncrna
398140 enst00000649013 sg00000227036 linc00511-251 17 72428267 72516812 - lnc_RNA lncrna
398280 enst00000648069 sg00000227036 linc00511-227 17 72403330 72516952 - lnc_RNA lncrna
398282 enst00000649311 sg00000227036 linc00511-257 17 72403327 72516954 - lnc_RNA lncrna
398420 enst00000648176 sg00000227036 linc00511-230 17 72403371 72517092 - lnc_RNA lncrna
400908 enst00000647593 sg00000227036 linc00511-218 17 72403327 72519580 - lnc_RNA lncrna
408363 enst00000650510 sg00000227036 linc00511-301 17 72428267 72527035 - lnc_RNA lncrna
456195 enst00000649332 sg00000227036 linc00511-259 17 72428267 72574867 - lnc_RNA lncrna
465087 enst00000648559 sg00000227036 linc00511-242 17 72428267 72583759 - lnc_RNA lncrna
468368 enst00000650554 sg00000227036 linc00511-303 17 72428267 72587040 - lnc_RNA lncrna
470645 enst00000648952 sg00000227036 linc00511-249 17 72403327 72589317 - lnc_RNA lncrna
473696 enst00000650482 sg00000227036 linc00511-298 17 72358070 72592368 - lnc_RNA lncrna
473764 enst00000648248 sg00000227036 linc00511-233 17 72290476 72592436 - lnc_RNA lncrna
474001 enst00000648428 sg00000227036 linc00511-238 17 72583002 72592673 - lnc_RNA lncrna
474020 enst00000650161 sg00000227036 linc00511-284 17 72428267 72592692 - lnc_RNA lncrna
474020 enst00000650570 sg00000227036 linc00511-304 17 72428267 72592692 - lnc_RNA lncrna
474020 enst00000649343 sg00000227036 linc00511-260 17 72427334 72592692 - lnc_RNA lncrna
474020 enst00000648954 sg00000227036 linc00511-250 17 72586627 72592692 - lnc_RNA lncrna
474020 enst00000649936 sg00000227036 linc00511-277 17 72590444 72592692 - lnc_RNA lncrna
474020 enst00000650423 sg00000227036 linc00511-296 17 72427334 72592692 - lnc_RNA lncrna
474020 enst00000650419 sg00000227036 linc00511-295 17 72323118 72592692 - lnc_RNA lncrna
474020 enst00000647953 sg00000227036 linc00511-225 17 72403343 72592692 - lnc_RNA lncrna
474020 enst00000650476 sg00000227036 linc00511-297 17 72323139 72592692 - lnc_RNA lncrna
474020 enst00000649250 sg00000227036 linc00511-255 17 72403329 72592692 - lnc_RNA lncrna
474020 enst00000581801 sg00000227036 linc00511-214 17 72323125 72592692 - lnc_RNA lncrna
474020 enst00000648088 sg00000227036 linc00511-228 17 72323142 72592692 - lnc_RNA lncrna
474020 enst00000649407 sg00000227036 linc00511-263 17 72591500 72592692 - lnc_RNA lncrna
474020 enst00000650227 sg00000227036 linc00511-290 17 72400849 72592692 - lnc_RNA lncrna
474130 enst00000648054 sg00000227036 linc00511-226 17 72428236 72592802 - lnc_RNA lncrna
474132 enst00000649614 sg00000227036 linc00511-271 17 72323139 72592804 - lnc_RNA lncrna
474132 enst00000648631 sg00000227036 linc00511-244 17 72290091 72592804 - lnc_RNA lncrna
474132 enst00000453722 sg00000227036 linc00511-201 17 72384302 72592804 - lnc_RNA lncrna
474132 enst00000648623 sg00000227036 linc00511-243 17 72403322 72592804 - lnc_RNA lncrna
474132 enst00000649350 sg00000227036 linc00511-261 17 72403322 72592804 - lnc_RNA lncrna
474157 enst00000650131 sg00000227036 linc00511-283 17 72403322 72592829 - lnc_RNA lncrna
474180 enst00000649793 sg00000227036 linc00511-274 17 72403322 72592852 - lnc_RNA lncrna
484475 enst00000648403 sg00000227036 linc00511-236 17 72403836 72603147 - lnc_RNA lncrna
484475 enst00000649330 sg00000227036 linc00511-258 17 72428267 72603147 - lnc_RNA lncrna
484490 enst00000649833 sg00000227036 linc00511-275 17 72403327 72603162 - lnc_RNA lncrna
484498 enst00000648520 sg00000227036 linc00511-240 17 72403329 72603170 - lnc_RNA lncrna
484543 enst00000649366 sg00000227036 linc00511-262 17 72403327 72603215 - lnc_RNA lncrna
484559 enst00000649489 sg00000227036 linc00511-266 17 72403327 72603231 - lnc_RNA lncrna
484837 enst00000580861 sg00000227036 linc00511-210 17 72428267 72603509 - lnc_RNA lncrna
485553 enst00000647706 sg00000227036 linc00511-221 17 72403327 72604225 - lnc_RNA lncrna
486260 enst00000648522 sg00000227036 linc00511-241 17 72598559 72604932 - lnc_RNA lncrna
486439 enst00000650550 sg00000227036 linc00511-302 17 72598040 72605111 - lnc_RNA lncrna
-495392 enst00000412707 sg00000228118 myl6p5-201 17 71620978 71621436 + pseudogenic_transcript processed_pseudogene
496462 enst00000647871 sg00000227036 linc00511-224 17 72598071 72615134 - lnc_RNA lncrna
499729 enst00000649074 sg00000227036 linc00511-252 17 72598041 72618401 - lnc_RNA lncrna
499741 enst00000649553 sg00000227036 linc00511-268 17 72603088 72618413 - lnc_RNA lncrna

Source file: /hps/research1/birney/users/adrien/analyses/cancer_DNA_promethion/run_1_2_3_4/DNA_pipeline_2/results/methylation/pycometh_meth_comp_CGI_3/out.tsv.gz

MD5 hash: 9aa0e3f69cb4e12345c3758eb68a5efc