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CpG interval report generated on 20/05/20 with pycoMeth 0.4.6
Interval details
| pvalue rank | chromosome | start | end | length | number of samples | number of CpGs | pvalue | adjusted pvalue |
|---|---|---|---|---|---|---|---|---|
| #8 | 4 | 1001583 | 1003754 | 2171 | 3 | 74 | 1.55205e-30 | 1.9294e-27 |
Methylation log-likelihood ratio by CpG position
Distribution of CpG methylation log-likelihood ratio by sample
Closest transcripts TSS
| distance to tss | transcript id | gene id | transcript name | chromosome | start | end | strand | feature type | transcript biotype |
|---|---|---|---|---|---|---|---|---|---|
| 0 | enst00000514417 | sg00000127415 | idua-211 | 4 | 1003429 | 1003724 | + | lnc_RNA | retained_intron |
| 0 | enst00000502829 | sg00000127415 | idua-202 | 4 | 1002741 | 1003389 | + | lnc_RNA | retained_intron |
| -1873 | enst00000652070 | sg00000127415 | idua-213 | 4 | 999710 | 1004505 | + | lnc_RNA | processed_transcript |
| 6182 | enst00000512562 | sg00000127418 | fgfrl1-207 | 4 | 1009936 | 1011027 | + | lnc_RNA | processed_transcript |
| 6225 | enst00000398484 | sg00000127418 | fgfrl1-202 | 4 | 1009979 | 1026891 | + | mRNA | protein_coding |
| 7872 | enst00000510644 | sg00000127418 | fgfrl1-205 | 4 | 1011626 | 1026898 | + | mRNA | protein_coding |
| -8143 | enst00000622731 | sg00000145217 | slc26a1-205 | 4 | 979406 | 993440 | - | mRNA | protein_coding |
| -8147 | enst00000361661 | sg00000145217 | slc26a1-201 | 4 | 987657 | 993436 | - | mRNA | protein_coding |
| -8179 | enst00000398516 | sg00000145217 | slc26a1-202 | 4 | 987657 | 993404 | - | mRNA | protein_coding |
| -8207 | enst00000398520 | sg00000145217 | slc26a1-203 | 4 | 979073 | 993376 | - | mRNA | protein_coding |
| 8392 | enst00000504138 | sg00000127418 | fgfrl1-203 | 4 | 1012146 | 1025347 | + | mRNA | protein_coding |
| 8401 | enst00000512174 | sg00000127418 | fgfrl1-206 | 4 | 1012155 | 1022363 | + | mRNA | protein_coding |
| 8402 | enst00000507339 | sg00000127418 | fgfrl1-204 | 4 | 1012156 | 1023840 | + | mRNA | protein_coding |
| 8697 | enst00000264748 | sg00000127418 | fgfrl1-201 | 4 | 1012451 | 1026897 | + | mRNA | protein_coding |
| -9711 | enst00000509948 | sg00000127415 | idua-208 | 4 | 991872 | 1001825 | + | lnc_RNA | processed_transcript |
| -9758 | enst00000514192 | sg00000127415 | idua-209 | 4 | 991825 | 1002069 | + | lnc_RNA | processed_transcript |
| -10388 | enst00000513138 | sg00000145217 | slc26a1-204 | 4 | 990621 | 991195 | - | lnc_RNA | processed_transcript |
| -13668 | enst00000509744 | sg00000127415 | idua-207 | 4 | 987915 | 989623 | + | lnc_RNA | processed_transcript |
| -14496 | enst00000504568 | sg00000127415 | idua-204 | 4 | 987087 | 1001715 | + | mRNA | protein_coding |
| -14507 | enst00000506561 | sg00000127415 | idua-205 | 4 | 987076 | 1001179 | + | lnc_RNA | retained_intron |
| -14517 | enst00000508168 | sg00000127415 | idua-206 | 4 | 987066 | 1001138 | + | lnc_RNA | retained_intron |
| -14539 | enst00000514224 | sg00000127415 | idua-210 | 4 | 987044 | 1004564 | + | mRNA | protein_coding |
| -14539 | enst00000514698 | sg00000127415 | idua-212 | 4 | 987044 | 1004505 | + | lnc_RNA | retained_intron |
| -14539 | enst00000502910 | sg00000127415 | idua-203 | 4 | 987044 | 1002003 | + | mRNA | protein_coding |
| -14586 | enst00000247933 | sg00000127415 | idua-201 | 4 | 986997 | 1004529 | + | mRNA | protein_coding |
| -14688 | enst00000510286 | sg00000145214 | dgkq-204 | 4 | 968291 | 986895 | - | mRNA | protein_coding |
| 23924 | enst00000503095 | sg00000250259 | ac019103.1-201 | 4 | 1027678 | 1028972 | + | lnc_RNA | lncrna |
| -28014 | enst00000273814 | sg00000145214 | dgkq-201 | 4 | 958887 | 973569 | - | mRNA | protein_coding |
| -28261 | enst00000509465 | sg00000145214 | dgkq-203 | 4 | 958888 | 973322 | - | mRNA | protein_coding |
| -34408 | enst00000502309 | sg00000145214 | dgkq-202 | 4 | 963142 | 967175 | - | lnc_RNA | processed_transcript |
| -39143 | enst00000515182 | sg00000145214 | dgkq-205 | 4 | 960615 | 962440 | - | mRNA | protein_coding |
| -49172 | enst00000506669 | sg00000127419 | tmem175-210 | 4 | 952411 | 955491 | + | lnc_RNA | retained_intron |
| -51132 | enst00000502513 | sg00000127419 | tmem175-204 | 4 | 950451 | 951973 | + | lnc_RNA | retained_intron |
| -53172 | enst00000504180 | sg00000127419 | tmem175-205 | 4 | 948411 | 953354 | + | lnc_RNA | processed_transcript |
| 54673 | enst00000514024 | sg00000178222 | rnf212-214 | 4 | 1056250 | 1058427 | - | lnc_RNA | retained_intron |
| -69066 | enst00000622959 | sg00000127419 | tmem175-222 | 4 | 932517 | 958652 | + | mRNA | protein_coding |
| -69096 | enst00000504850 | sg00000127419 | tmem175-208 | 4 | 932487 | 948510 | + | lnc_RNA | retained_intron |
| -69101 | enst00000514546 | sg00000127419 | tmem175-218 | 4 | 932482 | 952389 | + | mRNA | protein_coding |
| -69103 | enst00000510493 | sg00000127419 | tmem175-214 | 4 | 932480 | 958079 | + | mRNA | protein_coding |
| -69105 | enst00000508204 | sg00000127419 | tmem175-212 | 4 | 932478 | 958509 | + | mRNA | protein_coding |
| -69108 | enst00000504505 | sg00000127419 | tmem175-206 | 4 | 932475 | 950491 | + | lnc_RNA | retained_intron |
| -69111 | enst00000438836 | sg00000127419 | tmem175-202 | 4 | 932472 | 958656 | + | lnc_RNA | retained_intron |
| -69118 | enst00000515740 | sg00000127419 | tmem175-220 | 4 | 932465 | 958575 | + | mRNA | protein_coding |
| -69121 | enst00000513682 | sg00000127419 | tmem175-215 | 4 | 932462 | 951705 | + | mRNA | nonsense_mediated_decay |
| -69122 | enst00000515876 | sg00000127419 | tmem175-221 | 4 | 932461 | 955944 | + | lnc_RNA | retained_intron |
| -69123 | enst00000264771 | sg00000127419 | tmem175-201 | 4 | 932460 | 958656 | + | mRNA | protein_coding |
| -69123 | enst00000452360 | sg00000127419 | tmem175-203 | 4 | 932460 | 956892 | + | lnc_RNA | retained_intron |
| -69123 | enst00000509508 | sg00000127419 | tmem175-213 | 4 | 932460 | 955816 | + | mRNA | protein_coding |
| -69137 | enst00000504744 | sg00000127419 | tmem175-207 | 4 | 932446 | 952436 | + | mRNA | nonsense_mediated_decay |
| -69139 | enst00000515492 | sg00000127419 | tmem175-219 | 4 | 932444 | 957863 | + | mRNA | protein_coding |
| -69151 | enst00000505734 | sg00000127419 | tmem175-209 | 4 | 932432 | 948589 | + | lnc_RNA | retained_intron |
| -69157 | enst00000514453 | sg00000127419 | tmem175-217 | 4 | 932426 | 953303 | + | mRNA | protein_coding |
| -69179 | enst00000513952 | sg00000127419 | tmem175-216 | 4 | 932404 | 958656 | + | mRNA | nonsense_mediated_decay |
| -69196 | enst00000507319 | sg00000127419 | tmem175-211 | 4 | 932387 | 951259 | + | mRNA | protein_coding |
| -69210 | enst00000511163 | sg00000178950 | gak-214 | 4 | 849278 | 932373 | - | mRNA | protein_coding |
| -69218 | enst00000505819 | sg00000178950 | gak-207 | 4 | 893419 | 932365 | - | mRNA | nonsense_mediated_decay |
| -69256 | enst00000502656 | sg00000178950 | gak-202 | 4 | 896469 | 932327 | - | mRNA | protein_coding |
| -69256 | enst00000628912 | sg00000178950 | gak-223 | 4 | 912085 | 932327 | - | mRNA | protein_coding |
| -69266 | enst00000512325 | sg00000178950 | gak-219 | 4 | 898062 | 932317 | - | mRNA | nonsense_mediated_decay |
| -69266 | enst00000507580 | sg00000178950 | gak-209 | 4 | 893943 | 932317 | - | mRNA | nonsense_mediated_decay |
| -69267 | enst00000314167 | sg00000178950 | gak-201 | 4 | 849277 | 932316 | - | mRNA | protein_coding |
| -69363 | enst00000513935 | sg00000178950 | gak-220 | 4 | 912462 | 932220 | - | lnc_RNA | retained_intron |
| -69396 | enst00000618573 | sg00000178950 | gak-222 | 4 | 849676 | 932187 | - | mRNA | protein_coding |
| 70000 | enst00000508633 | sg00000178222 | rnf212-210 | 4 | 1056866 | 1073754 | - | lnc_RNA | retained_intron |
| 77849 | enst00000503206 | sg00000178222 | rnf212-205 | 4 | 1056254 | 1081603 | - | lnc_RNA | processed_transcript |
| 78203 | enst00000514757 | sg00000178222 | rnf212-215 | 4 | 1056254 | 1081957 | - | lnc_RNA | retained_intron |
| 78203 | enst00000505693 | sg00000178222 | rnf212-206 | 4 | 1056254 | 1081957 | - | lnc_RNA | retained_intron |
| -85827 | enst00000510022 | sg00000178950 | gak-212 | 4 | 904653 | 915756 | - | lnc_RNA | processed_transcript |
| -85848 | enst00000511229 | sg00000178950 | gak-215 | 4 | 904687 | 915735 | - | mRNA | protein_coding |
| -85905 | enst00000511983 | sg00000178950 | gak-218 | 4 | 911673 | 915678 | - | lnc_RNA | processed_transcript |
| -87554 | enst00000507124 | sg00000178950 | gak-208 | 4 | 911719 | 914029 | - | lnc_RNA | retained_intron |
| 96106 | enst00000512552 | sg00000178222 | rnf212-213 | 4 | 1085710 | 1099860 | - | lnc_RNA | retained_intron |
| -96802 | enst00000507991 | sg00000178950 | gak-210 | 4 | 897976 | 904781 | - | lnc_RNA | retained_intron |
| 97804 | enst00000513176 | sg00000251639 | ac092535.3-201 | 4 | 1100016 | 1101558 | - | pseudogenic_transcript | processed_pseudogene |
| -106756 | enst00000504435 | sg00000178950 | gak-204 | 4 | 885783 | 894827 | - | lnc_RNA | retained_intron |
| 109761 | enst00000508428 | sg00000178222 | rnf212-209 | 4 | 1072851 | 1113515 | - | mRNA | nonsense_mediated_decay |
| 109772 | enst00000511620 | sg00000178222 | rnf212-212 | 4 | 1072756 | 1113526 | - | mRNA | nonsense_mediated_decay |
| 109776 | enst00000333673 | sg00000178222 | rnf212-201 | 4 | 1093308 | 1113530 | - | mRNA | protein_coding |
| 109777 | enst00000505730 | sg00000178222 | rnf212-207 | 4 | 1100913 | 1113531 | - | lnc_RNA | processed_transcript |
| 109786 | enst00000506730 | sg00000178222 | rnf212-208 | 4 | 1056913 | 1113540 | - | mRNA | nonsense_mediated_decay |
| 109787 | enst00000510715 | sg00000178222 | rnf212-211 | 4 | 1072922 | 1113541 | - | mRNA | nonsense_mediated_decay |
| 109793 | enst00000454487 | sg00000178222 | rnf212-204 | 4 | 1096463 | 1113547 | - | lnc_RNA | retained_intron |
| 109808 | enst00000382968 | sg00000178222 | rnf212-202 | 4 | 1071478 | 1113562 | - | mRNA | protein_coding |
| 109810 | enst00000433731 | sg00000178222 | rnf212-203 | 4 | 1071478 | 1113564 | - | mRNA | protein_coding |
| 109885 | enst00000504969 | sg00000251652 | ac092535.4-201 | 4 | 1113639 | 1132950 | + | lnc_RNA | lncrna |
| 115130 | enst00000391156 | sg00000212458 | ac092535.1-201 | 4 | 1118884 | 1119013 | + | snoRNA | snorna |
| -117193 | enst00000504947 | sg00000178950 | gak-206 | 4 | 882768 | 884390 | - | lnc_RNA | retained_intron |
| 119410 | enst00000502630 | sg00000215367 | tmed11p-203 | 4 | 1115197 | 1123164 | - | lnc_RNA | processed_transcript |
| 119420 | enst00000491822 | sg00000215367 | tmed11p-202 | 4 | 1116264 | 1123174 | - | lnc_RNA | processed_transcript |
| 128555 | enst00000510332 | sg00000251652 | ac092535.4-202 | 4 | 1132309 | 1132977 | + | lnc_RNA | lncrna |
| -128810 | enst00000509566 | sg00000178950 | gak-211 | 4 | 849278 | 872773 | - | lnc_RNA | processed_transcript |
| -131626 | enst00000515868 | sg00000178950 | gak-221 | 4 | 849278 | 869957 | - | lnc_RNA | retained_intron |
| -134365 | enst00000510799 | sg00000178950 | gak-213 | 4 | 851853 | 867218 | - | mRNA | protein_coding |
| -134421 | enst00000511980 | sg00000178950 | gak-217 | 4 | 849308 | 867162 | - | mRNA | protein_coding |
| 147618 | enst00000417557 | sg00000227189 | ac092535.2-201 | 4 | 1151372 | 1153701 | + | lnc_RNA | lncrna |
| -147755 | enst00000511345 | sg00000178950 | gak-216 | 4 | 849278 | 853828 | - | lnc_RNA | retained_intron |
| -149662 | enst00000504668 | sg00000178950 | gak-205 | 4 | 849277 | 851921 | - | mRNA | nonsense_mediated_decay |
| -149910 | enst00000502799 | sg00000178950 | gak-203 | 4 | 849276 | 851673 | - | lnc_RNA | retained_intron |
| 149972 | enst00000479478 | sg00000215367 | tmed11p-201 | 4 | 1115263 | 1153726 | - | pseudogenic_transcript | transcribed_unitary_pseudogene |
| -155289 | enst00000651141 | sg00000286205 | ac139887.5-201 | 4 | 843963 | 846294 | - | lnc_RNA | lncrna |
| 164024 | enst00000609548 | sg00000273179 | ac092535.5-201 | 4 | 1167778 | 1168174 | + | lnc_RNA | lncrna |
| -164359 | enst00000568585 | sg00000260262 | ac139887.3-201 | 4 | 836512 | 837224 | - | lnc_RNA | lncrna |
| 167316 | enst00000509697 | sg00000159674 | spon2-213 | 4 | 1169763 | 1171070 | - | lnc_RNA | retained_intron |
| 167871 | enst00000507466 | sg00000159674 | spon2-211 | 4 | 1171029 | 1171625 | - | lnc_RNA | retained_intron |
| 168544 | enst00000504909 | sg00000159674 | spon2-208 | 4 | 1171383 | 1172298 | - | lnc_RNA | retained_intron |
| 168829 | enst00000290902 | sg00000159674 | spon2-201 | 4 | 1166932 | 1172583 | - | mRNA | protein_coding |
| 169091 | enst00000512888 | sg00000159674 | spon2-218 | 4 | 1171526 | 1172845 | - | lnc_RNA | retained_intron |
| 169373 | enst00000512150 | sg00000159674 | spon2-217 | 4 | 1171754 | 1173127 | - | lnc_RNA | retained_intron |
| 169416 | enst00000514490 | sg00000159674 | spon2-219 | 4 | 1172000 | 1173170 | - | mRNA | protein_coding |
| 169457 | enst00000503765 | sg00000159674 | spon2-206 | 4 | 1171381 | 1173211 | - | mRNA | protein_coding |
| 169457 | enst00000431380 | sg00000159674 | spon2-203 | 4 | 1166937 | 1173211 | - | mRNA | protein_coding |
| -175454 | enst00000304062 | sg00000168993 | cplx1-201 | 4 | 784957 | 826129 | - | mRNA | protein_coding |
| -175491 | enst00000505203 | sg00000168993 | cplx1-203 | 4 | 784958 | 826092 | - | mRNA | protein_coding |
| 191380 | enst00000515004 | sg00000159674 | spon2-220 | 4 | 1171879 | 1195134 | - | mRNA | protein_coding |
| 191385 | enst00000502483 | sg00000159674 | spon2-204 | 4 | 1171889 | 1195139 | - | mRNA | protein_coding |
| -196675 | enst00000504062 | sg00000168993 | cplx1-202 | 4 | 786531 | 804908 | - | mRNA | protein_coding |
| 197603 | enst00000505653 | sg00000159674 | spon2-209 | 4 | 1199613 | 1201357 | - | lnc_RNA | processed_transcript |
| 201334 | enst00000511672 | sg00000159674 | spon2-215 | 4 | 1172049 | 1205088 | - | mRNA | protein_coding |
| 201340 | enst00000515553 | sg00000159674 | spon2-221 | 4 | 1199927 | 1205094 | - | lnc_RNA | processed_transcript |
| 204391 | enst00000509233 | sg00000159674 | spon2-212 | 4 | 1172022 | 1208145 | - | mRNA | protein_coding |
| 204613 | enst00000504871 | sg00000159674 | spon2-207 | 4 | 1172587 | 1208367 | - | lnc_RNA | processed_transcript |
| 204623 | enst00000510542 | sg00000159674 | spon2-214 | 4 | 1204982 | 1208377 | - | lnc_RNA | processed_transcript |
| 205074 | enst00000502657 | sg00000159674 | spon2-205 | 4 | 1196827 | 1208828 | - | lnc_RNA | processed_transcript |
| 205084 | enst00000506266 | sg00000159674 | spon2-210 | 4 | 1172575 | 1208838 | - | lnc_RNA | processed_transcript |
| 205092 | enst00000511679 | sg00000159674 | spon2-216 | 4 | 1172025 | 1208846 | - | mRNA | protein_coding |
| 205208 | enst00000400762 | sg00000159674 | spon2-202 | 4 | 1199028 | 1208962 | - | lnc_RNA | processed_transcript |
| 205208 | enst00000617421 | sg00000159674 | spon2-222 | 4 | 1166937 | 1208962 | - | mRNA | protein_coding |
| 206366 | enst00000625256 | sg00000280927 | ctbp1-as-201 | 4 | 1210120 | 1218591 | + | lnc_RNA | lncrna |
| -208891 | enst00000506404 | sg00000168993 | cplx1-204 | 4 | 786390 | 792692 | - | lnc_RNA | retained_intron |
| 209296 | enst00000514596 | sg00000159692 | ctbp1-215 | 4 | 1211914 | 1213050 | - | lnc_RNA | retained_intron |
| 210000 | enst00000382950 | sg00000159692 | ctbp1-202 | 4 | 1212275 | 1213754 | - | lnc_RNA | retained_intron |
| 210708 | enst00000503594 | sg00000159692 | ctbp1-204 | 4 | 1211685 | 1214462 | - | mRNA | protein_coding |
| 212653 | enst00000511907 | sg00000159692 | ctbp1-211 | 4 | 1213991 | 1216407 | - | lnc_RNA | retained_intron |
| -219724 | enst00000665579 | sg00000249592 | ac139887.2-207 | 4 | 760487 | 781859 | - | lnc_RNA | lncrna |
| -219734 | enst00000503405 | sg00000249592 | ac139887.2-204 | 4 | 780246 | 781849 | - | lnc_RNA | lncrna |
| -219734 | enst00000503185 | sg00000249592 | ac139887.2-203 | 4 | 780149 | 781849 | - | lnc_RNA | lncrna |
| -219734 | enst00000503571 | sg00000249592 | ac139887.2-201 | 4 | 762387 | 781849 | - | lnc_RNA | lncrna |
| -219734 | enst00000660016 | sg00000249592 | ac139887.2-206 | 4 | 760202 | 781849 | - | lnc_RNA | lncrna |
| -219747 | enst00000652800 | sg00000249592 | ac139887.2-205 | 4 | 766240 | 781836 | - | lnc_RNA | lncrna |
| -219753 | enst00000507446 | sg00000249592 | ac139887.2-202 | 4 | 767141 | 781830 | - | lnc_RNA | lncrna |
| 221635 | enst00000510739 | sg00000159692 | ctbp1-210 | 4 | 1212913 | 1225389 | - | mRNA | nonsense_mediated_decay |
| 221641 | enst00000504784 | sg00000159692 | ctbp1-206 | 4 | 1221458 | 1225395 | - | mRNA | protein_coding |
| 224530 | enst00000504092 | sg00000159692 | ctbp1-205 | 4 | 1212182 | 1228284 | - | mRNA | protein_coding |
| 227390 | enst00000505826 | sg00000159692 | ctbp1-207 | 4 | 1214421 | 1231144 | - | lnc_RNA | processed_transcript |
| 229470 | enst00000514669 | sg00000159692 | ctbp1-216 | 4 | 1216086 | 1233224 | - | lnc_RNA | processed_transcript |
| -233394 | enst00000620529 | sg00000185619 | pcgf3-213 | 4 | 768189 | 770087 | + | mRNA | protein_coding |
| 233768 | enst00000629223 | sg00000159692 | ctbp1-219 | 4 | 1237103 | 1237522 | - | mRNA | protein_coding |
| -236509 | enst00000454037 | sg00000233799 | ac139887.1-201 | 4 | 764487 | 765074 | - | lnc_RNA | lncrna |
| 237709 | enst00000515690 | sg00000159692 | ctbp1-218 | 4 | 1235753 | 1241463 | - | lnc_RNA | processed_transcript |
| 238169 | enst00000510568 | sg00000159692 | ctbp1-209 | 4 | 1234687 | 1241923 | - | mRNA | protein_coding |
| -243843 | enst00000607877 | sg00000272588 | ac139887.4-201 | 4 | 757022 | 757740 | - | lnc_RNA | lncrna |
| 244986 | enst00000513420 | sg00000159692 | ctbp1-212 | 4 | 1225438 | 1248740 | - | mRNA | protein_coding |
| 245222 | enst00000514210 | sg00000159692 | ctbp1-213 | 4 | 1223420 | 1248976 | - | mRNA | protein_coding |
| 245358 | enst00000382952 | sg00000159692 | ctbp1-203 | 4 | 1211448 | 1249112 | - | mRNA | protein_coding |
| 245364 | enst00000514495 | sg00000159692 | ctbp1-214 | 4 | 1225351 | 1249118 | - | lnc_RNA | processed_transcript |
| 245383 | enst00000290921 | sg00000159692 | ctbp1-201 | 4 | 1211448 | 1249137 | - | mRNA | protein_coding |
| 245546 | enst00000507044 | sg00000196810 | ctbp1-dt-203 | 4 | 1249300 | 1250446 | + | lnc_RNA | lncrna |
| 245697 | enst00000578730 | sg00000196810 | ctbp1-dt-205 | 4 | 1249451 | 1288291 | + | lnc_RNA | lncrna |
| 246006 | enst00000670838 | sg00000196810 | ctbp1-dt-207 | 4 | 1249760 | 1265706 | + | lnc_RNA | lncrna |
| 246177 | enst00000515399 | sg00000159692 | ctbp1-217 | 4 | 1225360 | 1249931 | - | mRNA | protein_coding |
| 246199 | enst00000506180 | sg00000159692 | ctbp1-208 | 4 | 1216175 | 1249953 | - | mRNA | protein_coding |
| 246356 | enst00000514984 | sg00000196810 | ctbp1-dt-204 | 4 | 1250110 | 1251187 | + | lnc_RNA | lncrna |
| 246505 | enst00000581398 | sg00000196810 | ctbp1-dt-206 | 4 | 1250259 | 1255910 | + | lnc_RNA | lncrna |
| 246772 | enst00000357591 | sg00000196810 | ctbp1-dt-201 | 4 | 1250526 | 1251436 | + | lnc_RNA | lncrna |
| 249237 | enst00000505364 | sg00000196810 | ctbp1-dt-202 | 4 | 1252991 | 1266163 | + | lnc_RNA | lncrna |
| -257718 | enst00000488032 | sg00000185619 | pcgf3-212 | 4 | 743865 | 761364 | + | lnc_RNA | processed_transcript |
| -276476 | enst00000433814 | sg00000185619 | pcgf3-206 | 4 | 725107 | 743538 | + | mRNA | protein_coding |
| -277549 | enst00000502923 | sg00000248416 | ac107464.2-201 | 4 | 722275 | 724034 | - | lnc_RNA | lncrna |
| 286133 | enst00000505177 | sg00000090316 | maea-207 | 4 | 1289887 | 1339177 | + | mRNA | protein_coding |
| 286136 | enst00000513301 | sg00000090316 | maea-218 | 4 | 1289890 | 1322418 | + | mRNA | nonsense_mediated_decay |
| 286137 | enst00000512308 | sg00000090316 | maea-216 | 4 | 1289891 | 1327703 | + | mRNA | nonsense_mediated_decay |
| 286137 | enst00000503653 | sg00000090316 | maea-205 | 4 | 1289891 | 1336994 | + | mRNA | protein_coding |
| 286137 | enst00000264750 | sg00000090316 | maea-201 | 4 | 1289891 | 1340136 | + | mRNA | protein_coding |
| 286137 | enst00000303400 | sg00000090316 | maea-202 | 4 | 1289891 | 1340137 | + | mRNA | protein_coding |
| 286140 | enst00000502558 | sg00000090316 | maea-203 | 4 | 1289894 | 1332854 | + | mRNA | protein_coding |
| 286140 | enst00000509254 | sg00000090316 | maea-211 | 4 | 1289894 | 1328682 | + | mRNA | nonsense_mediated_decay |
| 286141 | enst00000514708 | sg00000090316 | maea-219 | 4 | 1289895 | 1340108 | + | mRNA | protein_coding |
| 286143 | enst00000508634 | sg00000090316 | maea-210 | 4 | 1289897 | 1312586 | + | lnc_RNA | retained_intron |
| 286154 | enst00000503693 | sg00000090316 | maea-206 | 4 | 1289908 | 1329276 | + | lnc_RNA | processed_transcript |
| 286160 | enst00000509531 | sg00000090316 | maea-212 | 4 | 1289914 | 1339179 | + | mRNA | nonsense_mediated_decay |
| 294316 | enst00000510862 | sg00000090316 | maea-214 | 4 | 1298070 | 1299969 | + | lnc_RNA | processed_transcript |
| -295640 | enst00000440452 | sg00000185619 | pcgf3-207 | 4 | 705943 | 767864 | + | mRNA | nonsense_mediated_decay |
| -295708 | enst00000484141 | sg00000185619 | pcgf3-211 | 4 | 705875 | 737540 | + | lnc_RNA | retained_intron |
| -295751 | enst00000430644 | sg00000185619 | pcgf3-205 | 4 | 705832 | 766599 | + | mRNA | nonsense_mediated_decay |
| -295799 | enst00000400151 | sg00000185619 | pcgf3-202 | 4 | 705784 | 734479 | + | mRNA | protein_coding |
| -295799 | enst00000482726 | sg00000185619 | pcgf3-210 | 4 | 705784 | 734842 | + | lnc_RNA | processed_transcript |
| -295799 | enst00000427463 | sg00000185619 | pcgf3-204 | 4 | 705784 | 735009 | + | mRNA | protein_coding |
| -295799 | enst00000470161 | sg00000185619 | pcgf3-208 | 4 | 705784 | 766608 | + | mRNA | protein_coding |
| -295801 | enst00000475288 | sg00000185619 | pcgf3-209 | 4 | 705782 | 731345 | + | lnc_RNA | retained_intron |
| -295818 | enst00000362003 | sg00000185619 | pcgf3-201 | 4 | 705765 | 770640 | + | mRNA | protein_coding |
| -295835 | enst00000419774 | sg00000185619 | pcgf3-203 | 4 | 705748 | 734943 | + | mRNA | protein_coding |
| 305689 | enst00000510794 | sg00000090316 | maea-213 | 4 | 1309443 | 1339384 | + | mRNA | protein_coding |
| 305713 | enst00000512842 | sg00000090316 | maea-217 | 4 | 1309467 | 1322414 | + | mRNA | protein_coding |
| 306033 | enst00000505839 | sg00000090316 | maea-208 | 4 | 1309787 | 1339281 | + | mRNA | protein_coding |
| -312142 | enst00000322224 | sg00000169026 | slc49a3-201 | 4 | 681829 | 689441 | - | mRNA | protein_coding |
| -312312 | enst00000347950 | sg00000169026 | slc49a3-202 | 4 | 681829 | 689271 | - | mRNA | protein_coding |
| -312392 | enst00000515118 | sg00000169026 | slc49a3-209 | 4 | 681858 | 689191 | - | mRNA | protein_coding |
| -312400 | enst00000512249 | sg00000169026 | slc49a3-206 | 4 | 683218 | 689183 | - | mRNA | protein_coding |
| -312440 | enst00000404286 | sg00000169026 | slc49a3-203 | 4 | 681831 | 689143 | - | mRNA | protein_coding |
| -312560 | enst00000513740 | sg00000169026 | slc49a3-208 | 4 | 686089 | 689023 | - | lnc_RNA | processed_transcript |
| -312603 | enst00000507165 | sg00000169026 | slc49a3-205 | 4 | 684483 | 688980 | - | mRNA | protein_coding |
| -314258 | enst00000503156 | sg00000169026 | slc49a3-204 | 4 | 681862 | 687325 | - | mRNA | protein_coding |
| -316482 | enst00000512400 | sg00000169026 | slc49a3-207 | 4 | 681829 | 685101 | - | lnc_RNA | retained_intron |
| -320837 | enst00000503612 | sg00000215375 | myl5-204 | 4 | 680746 | 682028 | + | lnc_RNA | retained_intron |
| -323394 | enst00000507804 | sg00000215375 | myl5-207 | 4 | 678189 | 680579 | + | mRNA | protein_coding |
| -323629 | enst00000513662 | sg00000215375 | myl5-209 | 4 | 677954 | 681990 | + | mRNA | nonsense_mediated_decay |
| -323661 | enst00000400159 | sg00000215375 | myl5-201 | 4 | 677922 | 682033 | + | mRNA | protein_coding |
| 325303 | enst00000512289 | sg00000090316 | maea-215 | 4 | 1329057 | 1340113 | + | lnc_RNA | processed_transcript |
| 325590 | enst00000506530 | sg00000090316 | maea-209 | 4 | 1329344 | 1340136 | + | lnc_RNA | retained_intron |
| -327023 | enst00000511290 | sg00000215375 | myl5-208 | 4 | 674560 | 682028 | + | mRNA | protein_coding |
| -327041 | enst00000502720 | sg00000215375 | myl5-202 | 4 | 674542 | 676481 | + | lnc_RNA | retained_intron |
| -327080 | enst00000503300 | sg00000215375 | myl5-203 | 4 | 674503 | 682027 | + | mRNA | nonsense_mediated_decay |
| -327253 | enst00000505852 | sg00000169020 | atp5me-202 | 4 | 672438 | 674330 | - | lnc_RNA | processed_transcript |
| -327307 | enst00000304312 | sg00000169020 | atp5me-201 | 4 | 672436 | 674276 | - | mRNA | protein_coding |
| -327462 | enst00000515202 | sg00000169020 | atp5me-205 | 4 | 672436 | 674121 | - | lnc_RNA | retained_intron |
| -327642 | enst00000505477 | sg00000215375 | myl5-205 | 4 | 673941 | 682022 | + | mRNA | protein_coding |
| -327762 | enst00000506525 | sg00000169020 | atp5me-203 | 4 | 672438 | 673821 | - | lnc_RNA | processed_transcript |
| -328003 | enst00000506838 | sg00000215375 | myl5-206 | 4 | 673580 | 682027 | + | mRNA | protein_coding |
| -328060 | enst00000515116 | sg00000169020 | atp5me-204 | 4 | 672494 | 673523 | - | lnc_RNA | retained_intron |
| 328413 | enst00000503162 | sg00000090316 | maea-204 | 4 | 1332167 | 1340113 | + | lnc_RNA | retained_intron |
| 328807 | enst00000515766 | sg00000090316 | maea-220 | 4 | 1332561 | 1340147 | + | lnc_RNA | retained_intron |
| -336673 | enst00000461490 | sg00000133256 | pde6b-204 | 4 | 664910 | 670314 | + | mRNA | protein_coding |
| -337813 | enst00000471824 | sg00000133256 | pde6b-207 | 4 | 663770 | 670193 | + | mRNA | protein_coding |
| -337860 | enst00000460119 | sg00000133256 | pde6b-203 | 4 | 663723 | 664922 | + | lnc_RNA | retained_intron |
| -339638 | enst00000609172 | sg00000272927 | ac107464.3-201 | 4 | 661209 | 661945 | - | lnc_RNA | lncrna |
| 343454 | enst00000389851 | sg00000163945 | uvssa-201 | 4 | 1347208 | 1388049 | + | mRNA | protein_coding |
| 343512 | enst00000511216 | sg00000163945 | uvssa-206 | 4 | 1347266 | 1395989 | + | mRNA | protein_coding |
| 343952 | enst00000507531 | sg00000163945 | uvssa-205 | 4 | 1347706 | 1386244 | + | mRNA | protein_coding |
| -345370 | enst00000468356 | sg00000242686 | ac107464.1-203 | 4 | 653059 | 656213 | - | lnc_RNA | lncrna |
| -346106 | enst00000489312 | sg00000242686 | ac107464.1-204 | 4 | 653734 | 655477 | - | lnc_RNA | lncrna |
| -347794 | enst00000599030 | sg00000242686 | ac107464.1-202 | 4 | 652955 | 653789 | - | lnc_RNA | lncrna |
| -348323 | enst00000598370 | sg00000242686 | ac107464.1-201 | 4 | 652850 | 653260 | - | lnc_RNA | lncrna |
| -348372 | enst00000467152 | sg00000133256 | pde6b-206 | 4 | 653211 | 654374 | + | lnc_RNA | retained_intron |
| -348403 | enst00000429163 | sg00000133256 | pde6b-202 | 4 | 653180 | 670233 | + | mRNA | protein_coding |
| -348406 | enst00000488061 | sg00000133256 | pde6b-211 | 4 | 653177 | 654084 | + | mRNA | protein_coding |
| -349310 | enst00000476034 | sg00000133256 | pde6b-209 | 4 | 652273 | 654669 | + | lnc_RNA | retained_intron |
| -349598 | enst00000474251 | sg00000133256 | pde6b-208 | 4 | 651985 | 654288 | + | lnc_RNA | retained_intron |
| -349598 | enst00000487902 | sg00000133256 | pde6b-210 | 4 | 651985 | 656943 | + | mRNA | protein_coding |
| -350024 | enst00000465426 | sg00000133256 | pde6b-205 | 4 | 651559 | 654858 | + | mRNA | protein_coding |
| 350753 | enst00000505716 | sg00000163945 | uvssa-203 | 4 | 1354507 | 1355214 | + | lnc_RNA | retained_intron |
| 352827 | enst00000504748 | sg00000254094 | ac078852.2-201 | 4 | 1356581 | 1358075 | + | lnc_RNA | lncrna |
| 354725 | enst00000515842 | sg00000253399 | ac078852.1-201 | 4 | 1358479 | 1359461 | + | lnc_RNA | lncrna |
| 362323 | enst00000511563 | sg00000163945 | uvssa-207 | 4 | 1366077 | 1386258 | + | mRNA | protein_coding |
| 371153 | enst00000512728 | sg00000163945 | uvssa-208 | 4 | 1374907 | 1386414 | + | mRNA | protein_coding |
| 372280 | enst00000503548 | sg00000163945 | uvssa-202 | 4 | 1376034 | 1388049 | + | mRNA | nonsense_mediated_decay |
| -375977 | enst00000496514 | sg00000133256 | pde6b-212 | 4 | 625606 | 670753 | + | mRNA | protein_coding |
| -375999 | enst00000255622 | sg00000133256 | pde6b-201 | 4 | 625584 | 670782 | + | mRNA | protein_coding |
| 381058 | enst00000507422 | sg00000163945 | uvssa-204 | 4 | 1384812 | 1385909 | + | lnc_RNA | processed_transcript |
| 387798 | enst00000324803 | sg00000288380 | ac118281.1-201 | 4 | 1391552 | 1395992 | + | mRNA | protein_coding |
| 402577 | enst00000422806 | sg00000235608 | nkx1-1-201 | 4 | 1402932 | 1406331 | - | mRNA | protein_coding |
| -422276 | enst00000670371 | sg00000283183 | ac116565.1-205 | 4 | 579307 | 584677 | + | lnc_RNA | lncrna |
| -423969 | enst00000666138 | sg00000283183 | ac116565.1-204 | 4 | 577614 | 584726 | + | lnc_RNA | lncrna |
| -424064 | enst00000665587 | sg00000283183 | ac116565.1-203 | 4 | 577519 | 618076 | + | lnc_RNA | lncrna |
| -424124 | enst00000663081 | sg00000283183 | ac116565.1-202 | 4 | 577459 | 584993 | + | lnc_RNA | lncrna |
| -424415 | enst00000637674 | sg00000283183 | ac116565.1-201 | 4 | 577168 | 584866 | + | lnc_RNA | lncrna |
| -425288 | enst00000610212 | sg00000273238 | tmem271-201 | 4 | 573880 | 576295 | - | mRNA | protein_coding |
| -464292 | enst00000505800 | sg00000174227 | pigg-210 | 4 | 537291 | 539523 | + | lnc_RNA | processed_transcript |
| -464878 | enst00000515237 | sg00000174227 | pigg-226 | 4 | 536705 | 539529 | + | lnc_RNA | processed_transcript |
| -467951 | enst00000508144 | sg00000174227 | pigg-214 | 4 | 533632 | 540196 | + | lnc_RNA | retained_intron |
| -468869 | enst00000504879 | sg00000174227 | pigg-209 | 4 | 532714 | 536314 | + | lnc_RNA | processed_transcript |
| -469469 | enst00000513192 | sg00000174227 | pigg-222 | 4 | 532114 | 539525 | + | lnc_RNA | retained_intron |
| -470743 | enst00000513239 | sg00000174227 | pigg-223 | 4 | 530840 | 539529 | + | lnc_RNA | retained_intron |
| -474633 | enst00000511666 | sg00000174227 | pigg-221 | 4 | 526950 | 539365 | + | lnc_RNA | retained_intron |
| -476015 | enst00000510235 | sg00000174227 | pigg-218 | 4 | 525568 | 530725 | + | mRNA | protein_coding |
| -476218 | enst00000503261 | sg00000174227 | pigg-206 | 4 | 525365 | 533981 | + | lnc_RNA | processed_transcript |
| -477751 | enst00000508669 | sg00000174227 | pigg-216 | 4 | 523832 | 527540 | + | lnc_RNA | retained_intron |
| -478063 | enst00000511247 | sg00000174227 | pigg-219 | 4 | 523520 | 524911 | + | lnc_RNA | processed_transcript |
| -479693 | enst00000508562 | sg00000174227 | pigg-215 | 4 | 521890 | 530498 | + | lnc_RNA | processed_transcript |
| -479826 | enst00000513679 | sg00000174227 | pigg-224 | 4 | 521757 | 522365 | + | lnc_RNA | processed_transcript |
| -480532 | enst00000507493 | sg00000174227 | pigg-213 | 4 | 521051 | 522313 | + | lnc_RNA | processed_transcript |
| -485513 | enst00000506898 | sg00000174227 | pigg-212 | 4 | 516070 | 522223 | + | lnc_RNA | processed_transcript |
Source file: /hps/research1/birney/users/adrien/analyses/cancer_DNA_promethion/run_1_2_3_4/DNA_pipeline_2/results/methylation/pycometh_meth_comp_CGI_3/out.tsv.gz
MD5 hash: 9aa0e3f69cb4e12345c3758eb68a5efc