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CpG interval report generated on 20/05/20 with pycoMeth 0.4.6
Interval details
| pvalue rank | chromosome | start | end | length | number of samples | number of CpGs | pvalue | adjusted pvalue |
|---|---|---|---|---|---|---|---|---|
| #7 | 7 | 149764357 | 149766480 | 2123 | 3 | 71 | 6.61629e-31 | 9.39986e-28 |
Methylation log-likelihood ratio by CpG position
Distribution of CpG methylation log-likelihood ratio by sample
Closest transcripts TSS
| distance to tss | transcript id | gene id | transcript name | chromosome | start | end | strand | feature type | transcript biotype |
|---|---|---|---|---|---|---|---|---|---|
| 6739 | enst00000484747 | sg00000181444 | znf467-202 | 7 | 149764182 | 149773219 | - | mRNA | protein_coding |
| 7108 | enst00000302017 | sg00000181444 | znf467-201 | 7 | 149764182 | 149773588 | - | mRNA | protein_coding |
| 9562 | enst00000378016 | sg00000197558 | sspo-201 | 7 | 149776042 | 149833829 | + | pseudogenic_transcript | transcribed_unitary_pseudogene |
| 9955 | enst00000486824 | sg00000197558 | sspo-207 | 7 | 149776435 | 149783291 | + | lnc_RNA | processed_transcript |
| 16791 | enst00000493502 | sg00000197558 | sspo-210 | 7 | 149783271 | 149784316 | + | lnc_RNA | retained_intron |
| 19740 | enst00000475488 | sg00000197558 | sspo-205 | 7 | 149786220 | 149799082 | + | lnc_RNA | retained_intron |
| -34317 | enst00000489951 | sg00000133619 | krba1-205 | 7 | 149730040 | 149730697 | + | lnc_RNA | retained_intron |
| -40796 | enst00000496080 | sg00000133619 | krba1-206 | 7 | 149723561 | 149725441 | + | lnc_RNA | retained_intron |
| -43407 | enst00000467333 | sg00000133619 | krba1-202 | 7 | 149720950 | 149722040 | + | mRNA | protein_coding |
| -44256 | enst00000621069 | sg00000133619 | krba1-209 | 7 | 149720101 | 149734571 | + | mRNA | nonsense_mediated_decay |
| 44435 | enst00000481772 | sg00000197558 | sspo-206 | 7 | 149810915 | 149812635 | + | lnc_RNA | processed_transcript |
| -44718 | enst00000485033 | sg00000133619 | krba1-203 | 7 | 149719639 | 149734571 | + | mRNA | protein_coding |
| -44935 | enst00000497895 | sg00000133619 | krba1-208 | 7 | 149719422 | 149720990 | + | mRNA | protein_coding |
| -49300 | enst00000319551 | sg00000133619 | krba1-201 | 7 | 149715057 | 149734575 | + | mRNA | protein_coding |
| -49346 | enst00000496259 | sg00000133619 | krba1-207 | 7 | 149715011 | 149734571 | + | mRNA | protein_coding |
| -49576 | enst00000486744 | sg00000133619 | krba1-204 | 7 | 149714781 | 149720124 | + | mRNA | protein_coding |
| 55664 | enst00000461331 | sg00000197558 | sspo-202 | 7 | 149822144 | 149827891 | + | lnc_RNA | processed_transcript |
| 55664 | enst00000488835 | sg00000197558 | sspo-208 | 7 | 149822144 | 149827891 | + | lnc_RNA | processed_transcript |
| 55664 | enst00000492965 | sg00000197558 | sspo-209 | 7 | 149822144 | 149827891 | + | lnc_RNA | processed_transcript |
| 57773 | enst00000465639 | sg00000197558 | sspo-203 | 7 | 149824253 | 149833979 | + | lnc_RNA | retained_intron |
| 58082 | enst00000472850 | sg00000197558 | sspo-204 | 7 | 149824562 | 149833978 | + | lnc_RNA | retained_intron |
| 71895 | enst00000489820 | sg00000106479 | znf862-206 | 7 | 149838375 | 149845091 | + | lnc_RNA | retained_intron |
| 71895 | enst00000460379 | sg00000106479 | znf862-202 | 7 | 149838375 | 149848024 | + | mRNA | protein_coding |
| 71895 | enst00000223210 | sg00000106479 | znf862-201 | 7 | 149838375 | 149867479 | + | mRNA | protein_coding |
| 81647 | enst00000488265 | sg00000106479 | znf862-205 | 7 | 149848127 | 149850887 | + | lnc_RNA | retained_intron |
| 83714 | enst00000466435 | sg00000106479 | znf862-203 | 7 | 149850194 | 149852742 | + | lnc_RNA | processed_transcript |
| 85092 | enst00000623941 | sg00000280149 | ac004877.2-201 | 7 | 149851572 | 149852170 | + | unconfirmed_transcript | tec |
| 89494 | enst00000478024 | sg00000106479 | znf862-204 | 7 | 149855974 | 149860450 | + | lnc_RNA | processed_transcript |
| 96012 | enst00000608963 | sg00000273419 | ac004877.1-201 | 7 | 149858400 | 149862492 | - | lnc_RNA | lncrna |
| 106488 | enst00000611515 | sg00000171130 | atp6v0e2-212 | 7 | 149872968 | 149880649 | + | mRNA | protein_coding |
| 106488 | enst00000421974 | sg00000171130 | atp6v0e2-201 | 7 | 149872968 | 149880689 | + | mRNA | protein_coding |
| 106488 | enst00000456496 | sg00000171130 | atp6v0e2-203 | 7 | 149872968 | 149880693 | + | mRNA | protein_coding |
| 106488 | enst00000615196 | sg00000171130 | atp6v0e2-213 | 7 | 149872968 | 149880698 | + | mRNA | protein_coding |
| 107121 | enst00000649866 | sg00000171130 | atp6v0e2-214 | 7 | 149873601 | 149891204 | + | mRNA | nonsense_mediated_decay |
| 107362 | enst00000488315 | sg00000204934 | atp6v0e2-as1-203 | 7 | 149867697 | 149873842 | - | lnc_RNA | lncrna |
| 107365 | enst00000461019 | sg00000204934 | atp6v0e2-as1-201 | 7 | 149867773 | 149873845 | - | lnc_RNA | lncrna |
| 107496 | enst00000479613 | sg00000171130 | atp6v0e2-207 | 7 | 149873976 | 149880689 | + | mRNA | protein_coding |
| 107496 | enst00000464683 | sg00000171130 | atp6v0e2-205 | 7 | 149873976 | 149879357 | + | mRNA | nonsense_mediated_decay |
| 107507 | enst00000606024 | sg00000171130 | atp6v0e2-211 | 7 | 149873987 | 149879996 | + | mRNA | protein_coding |
| 107507 | enst00000471877 | sg00000171130 | atp6v0e2-206 | 7 | 149873987 | 149880696 | + | mRNA | nonsense_mediated_decay |
| 107513 | enst00000464662 | sg00000171130 | atp6v0e2-204 | 7 | 149873993 | 149878965 | + | mRNA | protein_coding |
| 107563 | enst00000425642 | sg00000171130 | atp6v0e2-202 | 7 | 149874043 | 149880695 | + | mRNA | protein_coding |
| 108116 | enst00000483478 | sg00000171130 | atp6v0e2-208 | 7 | 149874596 | 149879622 | + | lnc_RNA | processed_transcript |
| 108324 | enst00000495408 | sg00000171130 | atp6v0e2-210 | 7 | 149874804 | 149879512 | + | lnc_RNA | processed_transcript |
| 108324 | enst00000490092 | sg00000171130 | atp6v0e2-209 | 7 | 149874804 | 149879542 | + | lnc_RNA | processed_transcript |
| 114130 | enst00000464939 | sg00000204934 | atp6v0e2-as1-202 | 7 | 149870298 | 149880610 | - | lnc_RNA | lncrna |
| 114997 | enst00000623150 | sg00000279536 | ac093458.2-201 | 7 | 149881477 | 149882105 | + | unconfirmed_transcript | tec |
| 115100 | enst00000608912 | sg00000273293 | ac093458.1-201 | 7 | 149881359 | 149881580 | - | lnc_RNA | lncrna |
| 124259 | enst00000609463 | sg00000273011 | ac092681.3-201 | 7 | 149890739 | 149891416 | + | lnc_RNA | lncrna |
| -139605 | enst00000472212 | sg00000133624 | znf767p-202 | 7 | 149547159 | 149624752 | - | lnc_RNA | processed_transcript |
| -139630 | enst00000463567 | sg00000133624 | znf767p-201 | 7 | 149547154 | 149624727 | - | lnc_RNA | processed_transcript |
| -139729 | enst00000486492 | sg00000133624 | znf767p-204 | 7 | 149549083 | 149624628 | - | lnc_RNA | processed_transcript |
| -139792 | enst00000513792 | sg00000133624 | znf767p-206 | 7 | 149619924 | 149624565 | - | pseudogenic_transcript | transcribed_unprocessed_pseudogene |
| -143013 | enst00000493198 | sg00000133624 | znf767p-205 | 7 | 149619749 | 149621344 | - | lnc_RNA | retained_intron |
| -143207 | enst00000481762 | sg00000133624 | znf767p-203 | 7 | 149558786 | 149621150 | - | lnc_RNA | processed_transcript |
| 143224 | enst00000297369 | sg00000224016 | ac092681.1-201 | 7 | 149891191 | 149909704 | - | pseudogenic_transcript | unprocessed_pseudogene |
| 234272 | enst00000565102 | sg00000260555 | ac092681.2-201 | 7 | 150000752 | 150005124 | + | lnc_RNA | lncrna |
| -266540 | enst00000644635 | sg00000181220 | znf746-205 | 7 | 149472696 | 149497817 | - | mRNA | protein_coding |
| -266548 | enst00000340622 | sg00000181220 | znf746-201 | 7 | 149472793 | 149497809 | - | mRNA | protein_coding |
| -266550 | enst00000458143 | sg00000181220 | znf746-202 | 7 | 149472796 | 149497807 | - | mRNA | protein_coding |
| -266624 | enst00000461958 | sg00000181220 | znf746-203 | 7 | 149487620 | 149497733 | - | mRNA | protein_coding |
| 267173 | enst00000665116 | sg00000241449 | ac092666.1-215 | 7 | 150033653 | 150045092 | + | lnc_RNA | lncrna |
| 268039 | enst00000663788 | sg00000241449 | ac092666.1-202 | 7 | 150034519 | 150045092 | + | lnc_RNA | lncrna |
| 268039 | enst00000662318 | sg00000241449 | ac092666.1-229 | 7 | 150034519 | 150045092 | + | lnc_RNA | lncrna |
| 268053 | enst00000668040 | sg00000241449 | ac092666.1-220 | 7 | 150034533 | 150074374 | + | lnc_RNA | lncrna |
| 268068 | enst00000658636 | sg00000241449 | ac092666.1-228 | 7 | 150034548 | 150045092 | + | lnc_RNA | lncrna |
| 269458 | enst00000668562 | sg00000241449 | ac092666.1-204 | 7 | 150035938 | 150045092 | + | lnc_RNA | lncrna |
| 270638 | enst00000655967 | sg00000241449 | ac092666.1-219 | 7 | 150037118 | 150045088 | + | lnc_RNA | lncrna |
| 272007 | enst00000667397 | sg00000241449 | ac092666.1-226 | 7 | 150038487 | 150045262 | + | lnc_RNA | lncrna |
| 272018 | enst00000660975 | sg00000241449 | ac092666.1-213 | 7 | 150038498 | 150045092 | + | lnc_RNA | lncrna |
| 272029 | enst00000669999 | sg00000241449 | ac092666.1-222 | 7 | 150038509 | 150045092 | + | lnc_RNA | lncrna |
| 272073 | enst00000495144 | sg00000241449 | ac092666.1-203 | 7 | 150038553 | 150074377 | + | lnc_RNA | lncrna |
| 272975 | enst00000653061 | sg00000241449 | ac092666.1-233 | 7 | 150039455 | 150045092 | + | lnc_RNA | lncrna |
| 273064 | enst00000670266 | sg00000241449 | ac092666.1-224 | 7 | 150039544 | 150045092 | + | lnc_RNA | lncrna |
| 274020 | enst00000653977 | sg00000241449 | ac092666.1-211 | 7 | 150040500 | 150045111 | + | lnc_RNA | lncrna |
| 274027 | enst00000659144 | sg00000241449 | ac092666.1-205 | 7 | 150040507 | 150045195 | + | lnc_RNA | lncrna |
| 274034 | enst00000655742 | sg00000241449 | ac092666.1-208 | 7 | 150040514 | 150045092 | + | lnc_RNA | lncrna |
| 274036 | enst00000667040 | sg00000241449 | ac092666.1-230 | 7 | 150040516 | 150045241 | + | lnc_RNA | lncrna |
| 274036 | enst00000668432 | sg00000241449 | ac092666.1-231 | 7 | 150040516 | 150045117 | + | lnc_RNA | lncrna |
| 274036 | enst00000663310 | sg00000241449 | ac092666.1-214 | 7 | 150040516 | 150045088 | + | lnc_RNA | lncrna |
| 274036 | enst00000659501 | sg00000241449 | ac092666.1-212 | 7 | 150040516 | 150045092 | + | lnc_RNA | lncrna |
| 274041 | enst00000492054 | sg00000241449 | ac092666.1-201 | 7 | 150040521 | 150076655 | + | lnc_RNA | lncrna |
| 274051 | enst00000663223 | sg00000241449 | ac092666.1-232 | 7 | 150040531 | 150074244 | + | lnc_RNA | lncrna |
| 274051 | enst00000668935 | sg00000241449 | ac092666.1-209 | 7 | 150040531 | 150045101 | + | lnc_RNA | lncrna |
| 274070 | enst00000656368 | sg00000241449 | ac092666.1-223 | 7 | 150040550 | 150045092 | + | lnc_RNA | lncrna |
| 274130 | enst00000656296 | sg00000241449 | ac092666.1-207 | 7 | 150040610 | 150045092 | + | lnc_RNA | lncrna |
| 274206 | enst00000668792 | sg00000241449 | ac092666.1-210 | 7 | 150040686 | 150045643 | + | lnc_RNA | lncrna |
| 274353 | enst00000493400 | sg00000241449 | ac092666.1-217 | 7 | 150040833 | 150045092 | + | lnc_RNA | lncrna |
| 274782 | enst00000666892 | sg00000241449 | ac092666.1-227 | 7 | 150041262 | 150045092 | + | lnc_RNA | lncrna |
| 275091 | enst00000653035 | sg00000241449 | ac092666.1-218 | 7 | 150041571 | 150045092 | + | lnc_RNA | lncrna |
| 276025 | enst00000664046 | sg00000241449 | ac092666.1-216 | 7 | 150042505 | 150045092 | + | lnc_RNA | lncrna |
| 276139 | enst00000670616 | sg00000241449 | ac092666.1-206 | 7 | 150042619 | 150045096 | + | lnc_RNA | lncrna |
| 276538 | enst00000670350 | sg00000241449 | ac092666.1-225 | 7 | 150043018 | 150045092 | + | lnc_RNA | lncrna |
| 277107 | enst00000666469 | sg00000241449 | ac092666.1-221 | 7 | 150043587 | 150045088 | + | lnc_RNA | lncrna |
| 281374 | enst00000613287 | sg00000276538 | ac092666.2-201 | 7 | 150047609 | 150047854 | - | pseudogenic_transcript | unprocessed_pseudogene |
| -286485 | enst00000471735 | sg00000181220 | znf746-204 | 7 | 149475378 | 149477872 | - | lnc_RNA | retained_intron |
| -303295 | enst00000247930 | sg00000196453 | znf777-201 | 7 | 149431363 | 149461062 | - | mRNA | protein_coding |
| -341682 | enst00000568729 | sg00000261842 | ac073314.1-201 | 7 | 149422675 | 149424890 | + | lnc_RNA | lncrna |
| -366153 | enst00000417506 | sg00000228151 | ac004941.1-201 | 7 | 149398204 | 149401456 | + | lnc_RNA | lncrna |
| -430333 | enst00000423757 | sg00000215311 | npm1p12-201 | 7 | 149334024 | 149334857 | + | pseudogenic_transcript | processed_pseudogene |
| -442265 | enst00000427009 | sg00000231397 | ac004941.2-201 | 7 | 149321865 | 149322092 | - | pseudogenic_transcript | processed_pseudogene |
| -470268 | enst00000480864 | sg00000244560 | ac004890.2-206 | 7 | 149294089 | 149297302 | + | lnc_RNA | processed_transcript |
| 471128 | enst00000653791 | sg00000286912 | ac006008.1-201 | 7 | 150234194 | 150237608 | - | lnc_RNA | lncrna |
| -476658 | enst00000416232 | sg00000244560 | ac004890.2-205 | 7 | 149287699 | 149297312 | + | lnc_RNA | processed_transcript |
| -476743 | enst00000481968 | sg00000244560 | ac004890.2-204 | 7 | 149287614 | 149295201 | + | pseudogenic_transcript | transcribed_unprocessed_pseudogene |
| -479046 | enst00000481817 | sg00000244560 | ac004890.2-203 | 7 | 149285311 | 149293823 | + | lnc_RNA | processed_transcript |
| -479076 | enst00000426347 | sg00000244560 | ac004890.2-201 | 7 | 149285281 | 149293762 | + | lnc_RNA | processed_transcript |
| -479076 | enst00000463462 | sg00000244560 | ac004890.2-202 | 7 | 149285281 | 149294053 | + | lnc_RNA | processed_transcript |
| 482580 | enst00000613959 | sg00000106526 | actr3c-206 | 7 | 150243919 | 150249060 | - | mRNA | protein_coding |
| -486219 | enst00000489518 | sg00000204946 | znf783-205 | 7 | 149278138 | 149293488 | + | lnc_RNA | processed_transcript |
| -486225 | enst00000481519 | sg00000204946 | znf783-204 | 7 | 149278132 | 149297302 | + | lnc_RNA | processed_transcript |
| -486365 | enst00000605566 | sg00000271664 | ac004890.3-201 | 7 | 149275619 | 149277992 | - | pseudogenic_transcript | unprocessed_pseudogene |
Source file: /hps/research1/birney/users/adrien/analyses/cancer_DNA_promethion/run_1_2_3_4/DNA_pipeline_2/results/methylation/pycometh_meth_comp_CGI_3/out.tsv.gz
MD5 hash: 9aa0e3f69cb4e12345c3758eb68a5efc