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CpG interval report generated on 20/05/20 with pycoMeth 0.4.6
Interval details
| pvalue rank | chromosome | start | end | length | number of samples | number of CpGs | pvalue | adjusted pvalue |
|---|---|---|---|---|---|---|---|---|
| #1 | 19 | 1465074 | 1471294 | 6220 | 3 | 214 | 5.02372e-60 | 4.99609e-56 |
Methylation log-likelihood ratio by CpG position
Distribution of CpG methylation log-likelihood ratio by sample
Closest transcripts TSS
| distance to tss | transcript id | gene id | transcript name | chromosome | start | end | strand | feature type | transcript biotype |
|---|---|---|---|---|---|---|---|---|---|
| 5191 | enst00000592486 | sg00000119559 | c19orf25-211 | 19 | 1474172 | 1476485 | - | lnc_RNA | retained_intron |
| -6494 | enst00000591252 | sg00000267317 | ac027307.2-201 | 19 | 1457670 | 1458580 | - | lnc_RNA | lncrna |
| 7603 | enst00000590621 | sg00000119559 | c19orf25-209 | 19 | 1474479 | 1478897 | - | mRNA | protein_coding |
| 7622 | enst00000588849 | sg00000119559 | c19orf25-206 | 19 | 1474186 | 1478916 | - | mRNA | protein_coding |
| 7824 | enst00000436106 | sg00000119559 | c19orf25-202 | 19 | 1473201 | 1479118 | - | mRNA | protein_coding |
| 7840 | enst00000589421 | sg00000119559 | c19orf25-208 | 19 | 1478435 | 1479134 | - | lnc_RNA | retained_intron |
| 7887 | enst00000586564 | sg00000119559 | c19orf25-204 | 19 | 1474168 | 1479181 | - | mRNA | protein_coding |
| 7889 | enst00000592872 | sg00000119559 | c19orf25-213 | 19 | 1474174 | 1479183 | - | mRNA | protein_coding |
| 7900 | enst00000588871 | sg00000119559 | c19orf25-207 | 19 | 1473204 | 1479194 | - | mRNA | protein_coding |
| 7907 | enst00000588427 | sg00000119559 | c19orf25-205 | 19 | 1461143 | 1479201 | - | mRNA | protein_coding |
| 7919 | enst00000591027 | sg00000119559 | c19orf25-210 | 19 | 1475904 | 1479213 | - | mRNA | protein_coding |
| 7921 | enst00000651077 | sg00000119559 | c19orf25-214 | 19 | 1474176 | 1479215 | - | mRNA | protein_coding |
| 7922 | enst00000427685 | sg00000119559 | c19orf25-201 | 19 | 1474155 | 1479216 | - | mRNA | protein_coding |
| 7925 | enst00000592605 | sg00000119559 | c19orf25-212 | 19 | 1478413 | 1479219 | - | lnc_RNA | processed_transcript |
| 8262 | enst00000585675 | sg00000119559 | c19orf25-203 | 19 | 1473948 | 1479556 | - | mRNA | protein_coding |
| 11373 | enst00000586074 | sg00000115257 | pcsk4-204 | 19 | 1481986 | 1482667 | - | lnc_RNA | retained_intron |
| -12274 | enst00000238483 | sg00000115266 | apc2-202 | 19 | 1452800 | 1465496 | + | mRNA | protein_coding |
| 12550 | enst00000591303 | sg00000115257 | pcsk4-211 | 19 | 1482439 | 1483844 | - | lnc_RNA | retained_intron |
| 12833 | enst00000586002 | sg00000115257 | pcsk4-203 | 19 | 1483498 | 1484127 | - | lnc_RNA | retained_intron |
| -12876 | enst00000587149 | sg00000115266 | apc2-204 | 19 | 1452198 | 1453614 | + | mRNA | protein_coding |
| -13785 | enst00000535453 | sg00000115266 | apc2-203 | 19 | 1451289 | 1473244 | + | mRNA | protein_coding |
| -14779 | enst00000593146 | sg00000115266 | apc2-208 | 19 | 1450295 | 1465418 | + | lnc_RNA | retained_intron |
| -14925 | enst00000233607 | sg00000115266 | apc2-201 | 19 | 1450149 | 1473244 | + | mRNA | protein_coding |
| -14925 | enst00000590877 | sg00000115266 | apc2-207 | 19 | 1450149 | 1455445 | + | mRNA | protein_coding |
| -14925 | enst00000590469 | sg00000115266 | apc2-206 | 19 | 1450149 | 1465409 | + | mRNA | protein_coding |
| -18772 | enst00000587869 | sg00000115266 | apc2-205 | 19 | 1446302 | 1455245 | + | mRNA | protein_coding |
| 18890 | enst00000614078 | sg00000115257 | pcsk4-213 | 19 | 1487848 | 1490184 | - | lnc_RNA | retained_intron |
| 19041 | enst00000591201 | sg00000115257 | pcsk4-210 | 19 | 1481428 | 1490335 | - | mRNA | nonsense_mediated_decay |
| 19048 | enst00000441747 | sg00000115257 | pcsk4-202 | 19 | 1481428 | 1490342 | - | lnc_RNA | retained_intron |
| 19083 | enst00000588671 | sg00000115257 | pcsk4-208 | 19 | 1487218 | 1490377 | - | mRNA | protein_coding |
| 19111 | enst00000588195 | sg00000115257 | pcsk4-207 | 19 | 1482411 | 1490405 | - | lnc_RNA | retained_intron |
| 19114 | enst00000300954 | sg00000115257 | pcsk4-201 | 19 | 1481428 | 1490408 | - | mRNA | protein_coding |
| 19117 | enst00000586616 | sg00000115257 | pcsk4-205 | 19 | 1481428 | 1490411 | - | lnc_RNA | retained_intron |
| 19152 | enst00000591687 | sg00000115257 | pcsk4-212 | 19 | 1487964 | 1490446 | - | lnc_RNA | processed_transcript |
| 19443 | enst00000590057 | sg00000115257 | pcsk4-209 | 19 | 1487293 | 1490737 | - | lnc_RNA | processed_transcript |
| 19458 | enst00000587784 | sg00000115257 | pcsk4-206 | 19 | 1487198 | 1490752 | - | lnc_RNA | processed_transcript |
| 19872 | enst00000591735 | sg00000115255 | reep6-204 | 19 | 1491166 | 1496181 | + | lnc_RNA | retained_intron |
| 19887 | enst00000233596 | sg00000115255 | reep6-201 | 19 | 1491181 | 1497927 | + | mRNA | protein_coding |
| 19976 | enst00000395479 | sg00000115255 | reep6-202 | 19 | 1491270 | 1497211 | + | mRNA | protein_coding |
| 24182 | enst00000395484 | sg00000115255 | reep6-203 | 19 | 1495476 | 1497721 | + | mRNA | nonsense_mediated_decay |
| -24235 | enst00000594262 | sg00000268798 | ac027307.3-201 | 19 | 1440839 | 1441938 | + | lnc_RNA | lncrna |
| -26652 | enst00000617694 | sg00000115268 | rps15-213 | 19 | 1438422 | 1440049 | + | mRNA | protein_coding |
| -26652 | enst00000585665 | sg00000115268 | rps15-202 | 19 | 1438422 | 1440494 | + | mRNA | protein_coding |
| -26653 | enst00000586096 | sg00000115268 | rps15-203 | 19 | 1438421 | 1440494 | + | mRNA | protein_coding |
| -26654 | enst00000592700 | sg00000115268 | rps15-211 | 19 | 1438420 | 1440494 | + | lnc_RNA | retained_intron |
| -26655 | enst00000593052 | sg00000115268 | rps15-212 | 19 | 1438419 | 1440494 | + | mRNA | protein_coding |
| -26668 | enst00000591804 | sg00000115268 | rps15-208 | 19 | 1438406 | 1440494 | + | mRNA | protein_coding |
| -26669 | enst00000586656 | sg00000115268 | rps15-204 | 19 | 1438405 | 1440233 | + | mRNA | protein_coding |
| -26669 | enst00000589656 | sg00000115268 | rps15-206 | 19 | 1438405 | 1440488 | + | mRNA | protein_coding |
| -26673 | enst00000592623 | sg00000115268 | rps15-210 | 19 | 1438401 | 1440494 | + | mRNA | protein_coding |
| -26674 | enst00000591032 | sg00000115268 | rps15-207 | 19 | 1438400 | 1440490 | + | mRNA | protein_coding |
| -26688 | enst00000592588 | sg00000115268 | rps15-209 | 19 | 1438386 | 1440494 | + | mRNA | protein_coding |
| -26689 | enst00000586686 | sg00000115268 | rps15-205 | 19 | 1438385 | 1440494 | + | mRNA | protein_coding |
| -26716 | enst00000233609 | sg00000115268 | rps15-201 | 19 | 1438358 | 1440494 | + | mRNA | protein_coding |
| -33031 | enst00000589874 | sg00000071626 | dazap1-208 | 19 | 1432043 | 1435684 | + | lnc_RNA | retained_intron |
| 34701 | enst00000591077 | sg00000185761 | adamtsl5-211 | 19 | 1505041 | 1505995 | - | lnc_RNA | processed_transcript |
| 36128 | enst00000590682 | sg00000185761 | adamtsl5-210 | 19 | 1506626 | 1507422 | - | lnc_RNA | retained_intron |
| 36302 | enst00000590090 | sg00000185761 | adamtsl5-207 | 19 | 1506739 | 1507596 | - | mRNA | protein_coding |
| 36729 | enst00000673796 | sg00000185988 | plk5-208 | 19 | 1508023 | 1535286 | + | mRNA | protein_coding |
| 37081 | enst00000590252 | sg00000267092 | ac027307.1-201 | 19 | 1508375 | 1508963 | + | lnc_RNA | lncrna |
| -38725 | enst00000585485 | sg00000071626 | dazap1-203 | 19 | 1426349 | 1435684 | + | lnc_RNA | retained_intron |
| 39842 | enst00000590440 | sg00000185761 | adamtsl5-208 | 19 | 1505867 | 1511136 | - | lnc_RNA | processed_transcript |
| 39842 | enst00000585700 | sg00000185761 | adamtsl5-203 | 19 | 1505867 | 1511136 | - | lnc_RNA | processed_transcript |
| 41725 | enst00000330475 | sg00000185761 | adamtsl5-201 | 19 | 1505022 | 1513019 | - | mRNA | protein_coding |
| 41725 | enst00000590562 | sg00000185761 | adamtsl5-209 | 19 | 1508538 | 1513019 | - | mRNA | protein_coding |
| 41725 | enst00000586272 | sg00000185761 | adamtsl5-205 | 19 | 1507998 | 1513019 | - | mRNA | protein_coding |
| 41895 | enst00000395467 | sg00000185761 | adamtsl5-202 | 19 | 1506262 | 1513189 | - | mRNA | protein_coding |
| 42262 | enst00000589839 | sg00000185761 | adamtsl5-206 | 19 | 1508813 | 1513556 | - | lnc_RNA | processed_transcript |
| 42310 | enst00000585804 | sg00000185761 | adamtsl5-204 | 19 | 1510150 | 1513604 | - | mRNA | protein_coding |
| -49104 | enst00000589484 | sg00000071626 | dazap1-207 | 19 | 1415970 | 1435687 | + | lnc_RNA | retained_intron |
| -49334 | enst00000587833 | sg00000071626 | dazap1-206 | 19 | 1415740 | 1421232 | + | lnc_RNA | processed_transcript |
| 52783 | enst00000588430 | sg00000185988 | plk5-204 | 19 | 1524077 | 1536046 | + | mRNA | protein_coding |
| 52783 | enst00000454744 | sg00000185988 | plk5-202 | 19 | 1524077 | 1536046 | + | mRNA | protein_coding |
| 52783 | enst00000642079 | sg00000185988 | plk5-205 | 19 | 1524077 | 1535457 | + | mRNA | protein_coding |
| 53593 | enst00000334770 | sg00000185988 | plk5-201 | 19 | 1524887 | 1535456 | + | mRNA | protein_coding |
| 54057 | enst00000673896 | sg00000185988 | plk5-210 | 19 | 1525351 | 1535296 | + | mRNA | protein_coding |
| 55165 | enst00000673674 | sg00000185988 | plk5-207 | 19 | 1526459 | 1535455 | + | lnc_RNA | processed_transcript |
| -55250 | enst00000590419 | sg00000071626 | dazap1-209 | 19 | 1409824 | 1418709 | + | lnc_RNA | processed_transcript |
| 57043 | enst00000588292 | sg00000185988 | plk5-203 | 19 | 1528337 | 1529048 | + | lnc_RNA | retained_intron |
| 57044 | enst00000673648 | sg00000185988 | plk5-206 | 19 | 1528338 | 1535107 | + | mRNA | protein_coding |
| 57075 | enst00000673829 | sg00000185988 | plk5-209 | 19 | 1528369 | 1531748 | + | lnc_RNA | retained_intron |
| -57339 | enst00000592453 | sg00000071626 | dazap1-210 | 19 | 1407735 | 1432690 | + | mRNA | protein_coding |
| -57394 | enst00000587079 | sg00000071626 | dazap1-205 | 19 | 1407680 | 1435683 | + | mRNA | protein_coding |
| -57397 | enst00000586579 | sg00000071626 | dazap1-204 | 19 | 1407677 | 1428903 | + | lnc_RNA | processed_transcript |
| -57461 | enst00000592522 | sg00000071626 | dazap1-211 | 19 | 1407613 | 1435687 | + | mRNA | protein_coding |
| -57461 | enst00000233078 | sg00000071626 | dazap1-201 | 19 | 1407613 | 1435687 | + | mRNA | protein_coding |
| -57505 | enst00000336761 | sg00000071626 | dazap1-202 | 19 | 1407569 | 1435684 | + | mRNA | protein_coding |
| -63504 | enst00000447102 | sg00000130005 | gamt-202 | 19 | 1397811 | 1401570 | - | mRNA | protein_coding |
| -63532 | enst00000252288 | sg00000130005 | gamt-201 | 19 | 1397026 | 1401542 | - | mRNA | protein_coding |
| -63580 | enst00000640762 | sg00000130005 | gamt-205 | 19 | 1397268 | 1401494 | - | mRNA | protein_coding |
| -65272 | enst00000591788 | sg00000130005 | gamt-203 | 19 | 1398600 | 1399802 | - | mRNA | protein_coding |
| -65327 | enst00000640164 | sg00000130005 | gamt-204 | 19 | 1397383 | 1399747 | - | lnc_RNA | retained_intron |
| -68607 | enst00000501448 | sg00000248015 | ac005329.1-201 | 19 | 1392170 | 1396467 | - | lnc_RNA | lncrna |
| -70189 | enst00000650765 | sg00000248015 | ac005329.1-202 | 19 | 1393350 | 1394885 | - | lnc_RNA | lncrna |
| -70196 | enst00000589734 | sg00000248015 | ac005329.1-204 | 19 | 1393578 | 1394878 | - | lnc_RNA | lncrna |
| -70207 | enst00000585596 | sg00000248015 | ac005329.1-203 | 19 | 1393566 | 1394867 | - | lnc_RNA | lncrna |
| -73232 | enst00000591358 | sg00000115286 | ndufs7-217 | 19 | 1391842 | 1395584 | + | lnc_RNA | retained_intron |
| -75409 | enst00000626781 | sg00000280486 | ac005329.3-201 | 19 | 1385473 | 1389665 | - | lnc_RNA | lncrna |
| -77049 | enst00000539882 | sg00000115286 | ndufs7-211 | 19 | 1388025 | 1388799 | + | lnc_RNA | retained_intron |
| -77074 | enst00000535382 | sg00000115286 | ndufs7-206 | 19 | 1388000 | 1395584 | + | lnc_RNA | retained_intron |
| -77270 | enst00000540530 | sg00000115286 | ndufs7-212 | 19 | 1387804 | 1395589 | + | lnc_RNA | retained_intron |
| -77335 | enst00000538523 | sg00000115286 | ndufs7-207 | 19 | 1387739 | 1393661 | + | lnc_RNA | retained_intron |
| -78446 | enst00000622587 | sg00000115286 | ndufs7-220 | 19 | 1386628 | 1395584 | + | lnc_RNA | retained_intron |
| -81023 | enst00000538929 | sg00000115286 | ndufs7-209 | 19 | 1384051 | 1393326 | + | lnc_RNA | processed_transcript |
| -81152 | enst00000414651 | sg00000115286 | ndufs7-203 | 19 | 1383922 | 1393532 | + | mRNA | protein_coding |
| -81156 | enst00000620479 | sg00000115286 | ndufs7-219 | 19 | 1383918 | 1395588 | + | mRNA | protein_coding |
| -81156 | enst00000546172 | sg00000115286 | ndufs7-215 | 19 | 1383918 | 1395584 | + | mRNA | nonsense_mediated_decay |
| -81167 | enst00000233627 | sg00000115286 | ndufs7-201 | 19 | 1383907 | 1395584 | + | mRNA | protein_coding |
| -81167 | enst00000534853 | sg00000115286 | ndufs7-205 | 19 | 1383907 | 1395576 | + | mRNA | nonsense_mediated_decay |
| -81170 | enst00000436115 | sg00000115286 | ndufs7-204 | 19 | 1383904 | 1393710 | + | lnc_RNA | retained_intron |
| -81170 | enst00000313408 | sg00000115286 | ndufs7-202 | 19 | 1383904 | 1395581 | + | mRNA | protein_coding |
| -81174 | enst00000538662 | sg00000115286 | ndufs7-208 | 19 | 1383900 | 1393877 | + | lnc_RNA | retained_intron |
| -81174 | enst00000539480 | sg00000115286 | ndufs7-210 | 19 | 1383900 | 1395589 | + | mRNA | protein_coding |
| -81184 | enst00000543289 | sg00000115286 | ndufs7-213 | 19 | 1383890 | 1395584 | + | lnc_RNA | retained_intron |
| -81190 | enst00000618074 | sg00000115286 | ndufs7-218 | 19 | 1383884 | 1395488 | + | mRNA | protein_coding |
| -81199 | enst00000545446 | sg00000115286 | ndufs7-214 | 19 | 1383875 | 1395584 | + | lnc_RNA | retained_intron |
| -81547 | enst00000546283 | sg00000115286 | ndufs7-216 | 19 | 1383527 | 1393545 | + | mRNA | protein_coding |
| -87554 | enst00000589673 | sg00000267755 | ac005329.2-202 | 19 | 1376773 | 1377520 | - | lnc_RNA | lncrna |
| -87836 | enst00000587059 | sg00000267755 | ac005329.2-201 | 19 | 1376773 | 1377238 | - | lnc_RNA | lncrna |
| -90710 | enst00000624592 | sg00000279488 | ac004623.1-201 | 19 | 1372238 | 1374364 | - | unconfirmed_transcript | tec |
| -91567 | enst00000591453 | sg00000160953 | pwwp3a-212 | 19 | 1373507 | 1378428 | + | lnc_RNA | processed_transcript |
| -91567 | enst00000588888 | sg00000160953 | pwwp3a-207 | 19 | 1373507 | 1376917 | + | lnc_RNA | processed_transcript |
| -92975 | enst00000591627 | sg00000160953 | pwwp3a-213 | 19 | 1372099 | 1376917 | + | lnc_RNA | retained_intron |
| -93751 | enst00000586067 | sg00000160953 | pwwp3a-203 | 19 | 1371323 | 1376865 | + | lnc_RNA | processed_transcript |
| -95970 | enst00000585399 | sg00000160953 | pwwp3a-202 | 19 | 1369104 | 1370778 | + | lnc_RNA | retained_intron |
| 96236 | enst00000605173 | sg00000181588 | mex3d-202 | 19 | 1554672 | 1567530 | - | mRNA | protein_coding |
| 96764 | enst00000402693 | sg00000181588 | mex3d-201 | 19 | 1554669 | 1568058 | - | mRNA | protein_coding |
| 99566 | enst00000488440 | sg00000239367 | rn7sl477p-201 | 19 | 1570575 | 1570860 | - | ncRNA | misc_rna |
| -103178 | enst00000586996 | sg00000160953 | pwwp3a-204 | 19 | 1361896 | 1366351 | + | lnc_RNA | retained_intron |
| 105645 | enst00000624421 | sg00000279009 | ac005943.2-201 | 19 | 1576939 | 1577086 | + | unconfirmed_transcript | tec |
| -108684 | enst00000627377 | sg00000160953 | pwwp3a-216 | 19 | 1356390 | 1373160 | + | mRNA | protein_coding |
| -108710 | enst00000415183 | sg00000160953 | pwwp3a-201 | 19 | 1356364 | 1377094 | + | mRNA | protein_coding |
| -108710 | enst00000587460 | sg00000160953 | pwwp3a-205 | 19 | 1356364 | 1377094 | + | mRNA | nonsense_mediated_decay |
| -108751 | enst00000652273 | sg00000160953 | pwwp3a-217 | 19 | 1356323 | 1378431 | + | mRNA | protein_coding |
| -108757 | enst00000588810 | sg00000160953 | pwwp3a-206 | 19 | 1356317 | 1360606 | + | mRNA | nonsense_mediated_decay |
| -108760 | enst00000591806 | sg00000160953 | pwwp3a-214 | 19 | 1356314 | 1378431 | + | mRNA | protein_coding |
| -108784 | enst00000591433 | sg00000160953 | pwwp3a-211 | 19 | 1356290 | 1371479 | + | mRNA | nonsense_mediated_decay |
| -110097 | enst00000591337 | sg00000160953 | pwwp3a-210 | 19 | 1354977 | 1360711 | + | mRNA | protein_coding |
| -110102 | enst00000590866 | sg00000160953 | pwwp3a-209 | 19 | 1354972 | 1359894 | + | lnc_RNA | retained_intron |
| -110152 | enst00000590695 | sg00000160953 | pwwp3a-208 | 19 | 1354922 | 1360631 | + | lnc_RNA | retained_intron |
| -110363 | enst00000592374 | sg00000160953 | pwwp3a-215 | 19 | 1354711 | 1357094 | + | mRNA | protein_coding |
| 110443 | enst00000589901 | sg00000071655 | mbd3-206 | 19 | 1578445 | 1581737 | - | lnc_RNA | retained_intron |
| 113279 | enst00000585903 | sg00000071655 | mbd3-203 | 19 | 1581108 | 1584573 | - | mRNA | nonsense_mediated_decay |
| 113660 | enst00000590830 | sg00000071655 | mbd3-208 | 19 | 1578012 | 1584954 | - | lnc_RNA | retained_intron |
| 114013 | enst00000592012 | sg00000071655 | mbd3-209 | 19 | 1576640 | 1585307 | - | mRNA | nonsense_mediated_decay |
| 114039 | enst00000589064 | sg00000071655 | mbd3-205 | 19 | 1577746 | 1585333 | - | lnc_RNA | processed_transcript |
| 114236 | enst00000590550 | sg00000071655 | mbd3-207 | 19 | 1576640 | 1585530 | - | mRNA | protein_coding |
| 115068 | enst00000592361 | sg00000071655 | mbd3-210 | 19 | 1581210 | 1586362 | - | mRNA | protein_coding |
| 121065 | enst00000585967 | sg00000071655 | mbd3-204 | 19 | 1581159 | 1592359 | - | mRNA | protein_coding |
| 121098 | enst00000592965 | sg00000071655 | mbd3-211 | 19 | 1585055 | 1592392 | - | mRNA | protein_coding |
| 121507 | enst00000156825 | sg00000071655 | mbd3-201 | 19 | 1573596 | 1592801 | - | mRNA | protein_coding |
| 121571 | enst00000434436 | sg00000071655 | mbd3-202 | 19 | 1573596 | 1592865 | - | mRNA | protein_coding |
| 130835 | enst00000593264 | sg00000127540 | uqcr11-205 | 19 | 1598049 | 1602129 | - | lnc_RNA | processed_transcript |
| 134142 | enst00000589880 | sg00000127540 | uqcr11-202 | 19 | 1598049 | 1605436 | - | mRNA | protein_coding |
| 134149 | enst00000593029 | sg00000127540 | uqcr11-204 | 19 | 1598049 | 1605443 | - | lnc_RNA | processed_transcript |
| 134151 | enst00000585937 | sg00000267059 | ac005943.1-201 | 19 | 1578339 | 1605445 | - | mRNA | nonsense_mediated_decay |
| 134168 | enst00000591899 | sg00000127540 | uqcr11-203 | 19 | 1597169 | 1605462 | - | mRNA | protein_coding |
| 134179 | enst00000585671 | sg00000127540 | uqcr11-201 | 19 | 1598922 | 1605473 | - | mRNA | protein_coding |
| -143849 | enst00000590086 | sg00000267372 | ac005330.1-201 | 19 | 1321225 | 1322846 | + | lnc_RNA | lncrna |
| 144504 | enst00000585731 | sg00000071564 | tcf3-205 | 19 | 1610965 | 1615798 | - | mRNA | protein_coding |
| 144504 | enst00000586164 | sg00000071564 | tcf3-207 | 19 | 1611755 | 1615798 | - | mRNA | nonsense_mediated_decay |
| 144504 | enst00000592395 | sg00000071564 | tcf3-216 | 19 | 1609291 | 1615798 | - | mRNA | nonsense_mediated_decay |
| 144510 | enst00000587425 | sg00000071564 | tcf3-211 | 19 | 1609472 | 1615804 | - | mRNA | protein_coding |
| 145301 | enst00000517124 | sg00000252933 | rnu6-1223p-201 | 19 | 1616492 | 1616595 | - | snRNA | snrna |
| 147822 | enst00000651991 | sg00000071564 | tcf3-221 | 19 | 1611170 | 1619116 | - | mRNA | nonsense_mediated_decay |
| 147841 | enst00000592628 | sg00000071564 | tcf3-217 | 19 | 1609293 | 1619135 | - | mRNA | protein_coding |
| 147856 | enst00000585855 | sg00000071564 | tcf3-206 | 19 | 1611314 | 1619150 | - | mRNA | nonsense_mediated_decay |
| 147915 | enst00000593064 | sg00000071564 | tcf3-218 | 19 | 1609293 | 1619209 | - | mRNA | protein_coding |
| 148053 | enst00000590684 | sg00000071564 | tcf3-215 | 19 | 1611056 | 1619347 | - | mRNA | protein_coding |
| 148559 | enst00000590436 | sg00000071564 | tcf3-213 | 19 | 1611168 | 1619853 | - | mRNA | protein_coding |
| 149752 | enst00000586410 | sg00000071564 | tcf3-209 | 19 | 1615811 | 1621046 | - | mRNA | protein_coding |
| 149912 | enst00000590605 | sg00000071564 | tcf3-214 | 19 | 1615791 | 1621206 | - | lnc_RNA | retained_intron |
| 150942 | enst00000610756 | sg00000071564 | tcf3-219 | 19 | 1611687 | 1622236 | - | lnc_RNA | retained_intron |
| -157355 | enst00000494093 | sg00000240846 | rps15p9-201 | 19 | 1307401 | 1307719 | - | pseudogenic_transcript | processed_pseudogene |
| 178993 | enst00000611869 | sg00000071564 | tcf3-220 | 19 | 1609290 | 1650287 | - | mRNA | protein_coding |
| -179201 | enst00000215368 | sg00000099617 | efna2-201 | 19 | 1285873 | 1301431 | + | mRNA | protein_coding |
| 179451 | enst00000587235 | sg00000071564 | tcf3-210 | 19 | 1625621 | 1650745 | - | mRNA | protein_coding |
| 180062 | enst00000586318 | sg00000071564 | tcf3-208 | 19 | 1632051 | 1651356 | - | mRNA | protein_coding |
| 181035 | enst00000344749 | sg00000071564 | tcf3-202 | 19 | 1609290 | 1652329 | - | mRNA | protein_coding |
| 181297 | enst00000453954 | sg00000071564 | tcf3-204 | 19 | 1609293 | 1652591 | - | mRNA | protein_coding |
| 181310 | enst00000395423 | sg00000071564 | tcf3-203 | 19 | 1611249 | 1652604 | - | mRNA | protein_coding |
| 181321 | enst00000262965 | sg00000071564 | tcf3-201 | 19 | 1609292 | 1652615 | - | mRNA | protein_coding |
| 181321 | enst00000588136 | sg00000071564 | tcf3-212 | 19 | 1609292 | 1652615 | - | mRNA | protein_coding |
| -188198 | enst00000585716 | sg00000228300 | fam174c-204 | 19 | 1276876 | 1279244 | + | lnc_RNA | processed_transcript |
| -188974 | enst00000590269 | sg00000228300 | fam174c-205 | 19 | 1276100 | 1278836 | + | lnc_RNA | processed_transcript |
| -188981 | enst00000485191 | sg00000228300 | fam174c-203 | 19 | 1276093 | 1279244 | + | lnc_RNA | retained_intron |
| -189053 | enst00000469144 | sg00000228300 | fam174c-202 | 19 | 1276021 | 1279244 | + | mRNA | protein_coding |
| -189544 | enst00000409293 | sg00000228300 | fam174c-201 | 19 | 1275530 | 1279228 | + | mRNA | protein_coding |
| -191520 | enst00000621399 | sg00000099622 | cirbp-245 | 19 | 1273554 | 1274805 | + | lnc_RNA | retained_intron |
| -191570 | enst00000586555 | sg00000099622 | cirbp-209 | 19 | 1273504 | 1274810 | + | lnc_RNA | retained_intron |
| -192149 | enst00000588917 | sg00000099622 | cirbp-220 | 19 | 1272925 | 1274810 | + | lnc_RNA | retained_intron |
| -192157 | enst00000590188 | sg00000099622 | cirbp-227 | 19 | 1272917 | 1274810 | + | lnc_RNA | processed_transcript |
| -193092 | enst00000444172 | sg00000099622 | cirbp-203 | 19 | 1271982 | 1274806 | + | mRNA | nonsense_mediated_decay |
| -194044 | enst00000592234 | sg00000099622 | cirbp-237 | 19 | 1271030 | 1274810 | + | mRNA | nonsense_mediated_decay |
| -194131 | enst00000588344 | sg00000099622 | cirbp-218 | 19 | 1270943 | 1273104 | + | mRNA | protein_coding |
| -194814 | enst00000585832 | sg00000267493 | cirbp-as1-201 | 19 | 1267471 | 1270260 | - | lnc_RNA | lncrna |
| -195718 | enst00000590171 | sg00000099622 | cirbp-226 | 19 | 1269356 | 1272374 | + | mRNA | nonsense_mediated_decay |
| -195722 | enst00000585914 | sg00000099622 | cirbp-206 | 19 | 1269352 | 1274773 | + | mRNA | nonsense_mediated_decay |
| -195723 | enst00000591659 | sg00000099622 | cirbp-234 | 19 | 1269351 | 1271639 | + | mRNA | protein_coding |
| -195724 | enst00000589235 | sg00000099622 | cirbp-222 | 19 | 1269350 | 1274810 | + | mRNA | protein_coding |
| -195726 | enst00000591376 | sg00000099622 | cirbp-232 | 19 | 1269348 | 1274880 | + | mRNA | nonsense_mediated_decay |
| -195726 | enst00000591055 | sg00000099622 | cirbp-230 | 19 | 1269348 | 1272803 | + | mRNA | nonsense_mediated_decay |
| -195727 | enst00000586636 | sg00000099622 | cirbp-210 | 19 | 1269347 | 1274880 | + | mRNA | nonsense_mediated_decay |
| -195737 | enst00000320936 | sg00000099622 | cirbp-201 | 19 | 1269337 | 1273172 | + | mRNA | protein_coding |
| -195738 | enst00000593048 | sg00000099622 | cirbp-241 | 19 | 1269336 | 1272600 | + | mRNA | nonsense_mediated_decay |
| -195739 | enst00000587169 | sg00000099622 | cirbp-212 | 19 | 1269335 | 1274810 | + | mRNA | nonsense_mediated_decay |
| -195741 | enst00000590347 | sg00000099622 | cirbp-228 | 19 | 1269333 | 1274810 | + | mRNA | nonsense_mediated_decay |
| -195742 | enst00000593283 | sg00000099622 | cirbp-244 | 19 | 1269332 | 1272057 | + | lnc_RNA | retained_intron |
| -195742 | enst00000588230 | sg00000099622 | cirbp-217 | 19 | 1269332 | 1272477 | + | mRNA | protein_coding |
| -195742 | enst00000591097 | sg00000099622 | cirbp-231 | 19 | 1269332 | 1272604 | + | mRNA | nonsense_mediated_decay |
| -195742 | enst00000413636 | sg00000099622 | cirbp-202 | 19 | 1269332 | 1273172 | + | mRNA | protein_coding |
| -195742 | enst00000593093 | sg00000099622 | cirbp-242 | 19 | 1269332 | 1274807 | + | lnc_RNA | retained_intron |
| -195742 | enst00000590704 | sg00000099622 | cirbp-229 | 19 | 1269332 | 1272777 | + | lnc_RNA | retained_intron |
| -195742 | enst00000587896 | sg00000099622 | cirbp-214 | 19 | 1269332 | 1274810 | + | mRNA | protein_coding |
| -195743 | enst00000593128 | sg00000099622 | cirbp-243 | 19 | 1269331 | 1272552 | + | lnc_RNA | retained_intron |
| -195743 | enst00000592412 | sg00000099622 | cirbp-238 | 19 | 1269331 | 1272041 | + | mRNA | nonsense_mediated_decay |
| -195743 | enst00000589686 | sg00000099622 | cirbp-224 | 19 | 1269331 | 1271995 | + | mRNA | protein_coding |
| -195744 | enst00000587323 | sg00000099622 | cirbp-213 | 19 | 1269330 | 1272550 | + | mRNA | protein_coding |
| -195747 | enst00000586773 | sg00000099622 | cirbp-211 | 19 | 1269327 | 1274595 | + | mRNA | protein_coding |
| -195806 | enst00000628979 | sg00000099622 | cirbp-246 | 19 | 1269268 | 1272443 | + | mRNA | protein_coding |
| -195808 | enst00000589710 | sg00000099622 | cirbp-225 | 19 | 1269266 | 1273172 | + | mRNA | protein_coding |
| -195808 | enst00000585630 | sg00000099622 | cirbp-204 | 19 | 1269266 | 1272582 | + | mRNA | protein_coding |
| -197662 | enst00000585913 | sg00000099622 | cirbp-205 | 19 | 1267412 | 1274810 | + | mRNA | nonsense_mediated_decay |
| -197735 | enst00000586548 | sg00000099622 | cirbp-208 | 19 | 1267339 | 1273172 | + | mRNA | protein_coding |
| -197845 | enst00000591935 | sg00000099622 | cirbp-235 | 19 | 1267229 | 1274480 | + | mRNA | protein_coding |
| -197920 | enst00000592815 | sg00000099622 | cirbp-240 | 19 | 1267154 | 1271151 | + | mRNA | protein_coding |
| -197986 | enst00000588090 | sg00000099622 | cirbp-216 | 19 | 1267088 | 1273172 | + | mRNA | protein_coding |
| -198276 | enst00000589266 | sg00000099622 | cirbp-223 | 19 | 1266798 | 1271360 | + | mRNA | protein_coding |
| -198421 | enst00000586472 | sg00000099622 | cirbp-207 | 19 | 1266653 | 1273172 | + | mRNA | protein_coding |
| -203253 | enst00000589161 | sg00000099622 | cirbp-221 | 19 | 1261821 | 1264698 | + | lnc_RNA | retained_intron |
| -203692 | enst00000592051 | sg00000099622 | cirbp-236 | 19 | 1261382 | 1271029 | + | mRNA | protein_coding |
| -203732 | enst00000591622 | sg00000099622 | cirbp-233 | 19 | 1261342 | 1264572 | + | lnc_RNA | retained_intron |
| -203908 | enst00000592467 | sg00000099622 | cirbp-239 | 19 | 1261166 | 1264572 | + | lnc_RNA | retained_intron |
| -203918 | enst00000588411 | sg00000099622 | cirbp-219 | 19 | 1261156 | 1271433 | + | mRNA | protein_coding |
| -205690 | enst00000588030 | sg00000099622 | cirbp-215 | 19 | 1259384 | 1273172 | + | mRNA | protein_coding |
| -211390 | enst00000590136 | sg00000167470 | midn-204 | 19 | 1253684 | 1254303 | + | lnc_RNA | retained_intron |
| -213512 | enst00000586843 | sg00000167470 | midn-203 | 19 | 1251562 | 1254302 | + | mRNA | protein_coding |
| -213813 | enst00000591302 | sg00000167470 | midn-205 | 19 | 1251261 | 1254237 | + | lnc_RNA | retained_intron |
| -215186 | enst00000591446 | sg00000167470 | midn-206 | 19 | 1249888 | 1258699 | + | mRNA | protein_coding |
| -216521 | enst00000300952 | sg00000167470 | midn-201 | 19 | 1248553 | 1259140 | + | mRNA | protein_coding |
| -216521 | enst00000586757 | sg00000167470 | midn-202 | 19 | 1248553 | 1254430 | + | mRNA | protein_coding |
| -221016 | enst00000614837 | sg00000099624 | atp5f1d-209 | 19 | 1244058 | 1244825 | + | lnc_RNA | retained_intron |
| -221017 | enst00000589478 | sg00000099624 | atp5f1d-204 | 19 | 1244057 | 1244825 | + | lnc_RNA | retained_intron |
| -222569 | enst00000591249 | sg00000099624 | atp5f1d-206 | 19 | 1242505 | 1244825 | + | mRNA | protein_coding |
| -223254 | enst00000591660 | sg00000099624 | atp5f1d-207 | 19 | 1241820 | 1244786 | + | mRNA | protein_coding |
| -223257 | enst00000588538 | sg00000099624 | atp5f1d-203 | 19 | 1241817 | 1244825 | + | lnc_RNA | retained_intron |
| -223304 | enst00000590265 | sg00000099624 | atp5f1d-205 | 19 | 1241770 | 1244825 | + | lnc_RNA | retained_intron |
| -223306 | enst00000592624 | sg00000099624 | atp5f1d-208 | 19 | 1241768 | 1243354 | + | lnc_RNA | retained_intron |
| -223323 | enst00000215375 | sg00000099624 | atp5f1d-201 | 19 | 1241751 | 1244825 | + | mRNA | protein_coding |
| -223328 | enst00000395633 | sg00000099624 | atp5f1d-202 | 19 | 1241746 | 1244825 | + | mRNA | protein_coding |
| -226895 | enst00000592843 | sg00000267778 | ac004221.1-201 | 19 | 1238179 | 1239522 | + | lnc_RNA | lncrna |
| -227047 | enst00000650044 | sg00000099625 | cbarp-207 | 19 | 1228287 | 1238027 | - | mRNA | protein_coding |
| -227047 | enst00000648750 | sg00000099625 | cbarp-206 | 19 | 1228287 | 1238027 | - | mRNA | nonsense_mediated_decay |
| -227047 | enst00000590083 | sg00000099625 | cbarp-204 | 19 | 1228287 | 1238027 | - | mRNA | protein_coding |
| -227083 | enst00000382477 | sg00000099625 | cbarp-202 | 19 | 1229179 | 1237991 | - | mRNA | protein_coding |
| -227228 | enst00000589260 | sg00000099625 | cbarp-203 | 19 | 1234574 | 1237846 | - | lnc_RNA | retained_intron |
| -227254 | enst00000215376 | sg00000099625 | cbarp-201 | 19 | 1234647 | 1237820 | - | lnc_RNA | retained_intron |
| -229989 | enst00000591127 | sg00000099625 | cbarp-205 | 19 | 1229948 | 1235085 | - | mRNA | nonsense_mediated_decay |
| -241926 | enst00000585465 | sg00000118046 | stk11-202 | 19 | 1223148 | 1228095 | + | mRNA | protein_coding |
| -245061 | enst00000591133 | sg00000118046 | stk11-208 | 19 | 1220013 | 1223104 | + | lnc_RNA | retained_intron |
| 252821 | enst00000622745 | sg00000275642 | ac005619.1-201 | 19 | 1724115 | 1724395 | + | ncRNA | misc_rna |
| -257983 | enst00000586358 | sg00000118046 | stk11-206 | 19 | 1207091 | 1221958 | + | lnc_RNA | retained_intron |
| -258205 | enst00000585851 | sg00000118046 | stk11-204 | 19 | 1206869 | 1220617 | + | mRNA | protein_coding |
| -258250 | enst00000589152 | sg00000118046 | stk11-207 | 19 | 1206824 | 1228012 | + | lnc_RNA | retained_intron |
| -258258 | enst00000593219 | sg00000118046 | stk11-209 | 19 | 1206816 | 1219357 | + | mRNA | nonsense_mediated_decay |
| -258888 | enst00000652231 | sg00000118046 | stk11-210 | 19 | 1206186 | 1223873 | + | mRNA | protein_coding |
| -259269 | enst00000586243 | sg00000118046 | stk11-205 | 19 | 1205805 | 1228094 | + | mRNA | protein_coding |
| -259296 | enst00000326873 | sg00000118046 | stk11-201 | 19 | 1205778 | 1228431 | + | mRNA | protein_coding |
| -261865 | enst00000591146 | sg00000267736 | hmgb2p1-201 | 19 | 1203209 | 1203842 | + | pseudogenic_transcript | transcribed_processed_pseudogene |
| 276762 | enst00000586506 | sg00000267073 | ac005256.1-201 | 19 | 1748056 | 1748741 | + | lnc_RNA | lncrna |
| 276866 | enst00000592934 | sg00000267073 | ac005256.1-202 | 19 | 1748160 | 1748745 | + | lnc_RNA | lncrna |
| 282212 | enst00000382349 | sg00000205922 | onecut3-201 | 19 | 1753506 | 1780988 | + | mRNA | protein_coding |
| -287516 | enst00000585748 | sg00000118046 | stk11-203 | 19 | 1177558 | 1219386 | + | mRNA | protein_coding |
| -290806 | enst00000361757 | sg00000064932 | sbno2-201 | 19 | 1107638 | 1174268 | - | mRNA | protein_coding |
| -290818 | enst00000587024 | sg00000064932 | sbno2-204 | 19 | 1107641 | 1174256 | - | mRNA | protein_coding |
| -291300 | enst00000590176 | sg00000064932 | sbno2-207 | 19 | 1127661 | 1173774 | - | mRNA | protein_coding |
| -295928 | enst00000587655 | sg00000064932 | sbno2-205 | 19 | 1127710 | 1169146 | - | mRNA | protein_coding |
| -309938 | enst00000590998 | sg00000064932 | sbno2-209 | 19 | 1127660 | 1155136 | - | mRNA | protein_coding |
| 319523 | enst00000526847 | sg00000130270 | atp8b3-204 | 19 | 1785558 | 1790817 | - | mRNA | nonsense_mediated_decay |
| -332853 | enst00000592222 | sg00000064932 | sbno2-210 | 19 | 1115356 | 1132221 | - | lnc_RNA | retained_intron |
| -332853 | enst00000438103 | sg00000064932 | sbno2-202 | 19 | 1107637 | 1132221 | - | mRNA | protein_coding |
| 334866 | enst00000533107 | sg00000130270 | atp8b3-206 | 19 | 1798764 | 1806160 | - | lnc_RNA | retained_intron |
| 340330 | enst00000533993 | sg00000130270 | atp8b3-207 | 19 | 1805190 | 1811624 | - | lnc_RNA | processed_transcript |
| 340906 | enst00000525591 | sg00000130270 | atp8b3-202 | 19 | 1783028 | 1812200 | - | mRNA | protein_coding |
| 340943 | enst00000587160 | sg00000130270 | atp8b3-208 | 19 | 1807168 | 1812237 | - | mRNA | protein_coding |
| 340982 | enst00000310127 | sg00000130270 | atp8b3-201 | 19 | 1782075 | 1812276 | - | mRNA | protein_coding |
| 340982 | enst00000526092 | sg00000130270 | atp8b3-203 | 19 | 1798761 | 1812276 | - | mRNA | protein_coding |
| 340982 | enst00000531925 | sg00000130270 | atp8b3-205 | 19 | 1782077 | 1812276 | - | mRNA | nonsense_mediated_decay |
| 343955 | enst00000586259 | sg00000267007 | ac012615.2-201 | 19 | 1815249 | 1815873 | + | lnc_RNA | lncrna |
| 344944 | enst00000411312 | sg00000284216 | mir1909-201 | 19 | 1816159 | 1816238 | - | miRNA | mirna |
| -344946 | enst00000590446 | sg00000064932 | sbno2-208 | 19 | 1117396 | 1120128 | - | lnc_RNA | retained_intron |
| 345093 | enst00000587404 | sg00000079313 | rexo1-204 | 19 | 1816039 | 1816387 | - | lnc_RNA | retained_intron |
| 345471 | enst00000586291 | sg00000079313 | rexo1-202 | 19 | 1816094 | 1816765 | - | lnc_RNA | retained_intron |
| 347441 | enst00000588743 | sg00000079313 | rexo1-206 | 19 | 1817179 | 1818735 | - | lnc_RNA | retained_intron |
| 348669 | enst00000590936 | sg00000079313 | rexo1-207 | 19 | 1815970 | 1819963 | - | mRNA | nonsense_mediated_decay |
| 350273 | enst00000586343 | sg00000079313 | rexo1-203 | 19 | 1818558 | 1821567 | - | mRNA | nonsense_mediated_decay |
| 350750 | enst00000643515 | sg00000079313 | rexo1-208 | 19 | 1815970 | 1822044 | - | mRNA | protein_coding |
| 350795 | enst00000593201 | sg00000267244 | ac012615.6-201 | 19 | 1822089 | 1824542 | + | lnc_RNA | lncrna |
| 350852 | enst00000590823 | sg00000267244 | ac012615.6-202 | 19 | 1822146 | 1824542 | + | lnc_RNA | retained_intron |
| 351267 | enst00000590531 | sg00000267244 | ac012615.6-203 | 19 | 1822561 | 1823154 | + | lnc_RNA | lncrna |
| 351906 | enst00000587741 | sg00000267244 | ac012615.6-204 | 19 | 1823200 | 1824542 | + | lnc_RNA | lncrna |
| -353469 | enst00000587673 | sg00000064932 | sbno2-206 | 19 | 1108565 | 1111605 | - | lnc_RNA | retained_intron |
| -354012 | enst00000586109 | sg00000064932 | sbno2-203 | 19 | 1109501 | 1111062 | - | lnc_RNA | retained_intron |
| -359620 | enst00000585480 | sg00000167468 | gpx4-203 | 19 | 1105454 | 1106779 | + | mRNA | non_stop_decay |
| -359821 | enst00000587932 | sg00000167468 | gpx4-205 | 19 | 1105253 | 1105673 | + | lnc_RNA | retained_intron |
| -359918 | enst00000592940 | sg00000167468 | gpx4-208 | 19 | 1105156 | 1106791 | + | lnc_RNA | retained_intron |
| -359922 | enst00000587648 | sg00000167468 | gpx4-204 | 19 | 1105152 | 1106564 | + | mRNA | protein_coding |
| -360368 | enst00000614791 | sg00000167468 | gpx4-211 | 19 | 1104706 | 1105483 | + | mRNA | protein_coding |
| -360424 | enst00000622390 | sg00000167468 | gpx4-213 | 19 | 1104650 | 1106787 | + | mRNA | protein_coding |
| -360659 | enst00000585362 | sg00000167468 | gpx4-202 | 19 | 1104415 | 1105761 | + | mRNA | protein_coding |
| -361001 | enst00000588919 | sg00000167468 | gpx4-206 | 19 | 1104073 | 1106788 | + | mRNA | protein_coding |
| -361007 | enst00000593032 | sg00000167468 | gpx4-209 | 19 | 1104067 | 1106443 | + | mRNA | protein_coding |
| -361022 | enst00000611653 | sg00000167468 | gpx4-210 | 19 | 1104052 | 1106779 | + | mRNA | protein_coding |
| -361066 | enst00000589115 | sg00000167468 | gpx4-207 | 19 | 1104008 | 1106779 | + | mRNA | protein_coding |
| -361080 | enst00000354171 | sg00000167468 | gpx4-201 | 19 | 1103994 | 1106779 | + | mRNA | protein_coding |
| -361148 | enst00000616066 | sg00000167468 | gpx4-212 | 19 | 1103926 | 1106787 | + | mRNA | protein_coding |
| -369694 | enst00000612655 | sg00000099817 | polr2e-211 | 19 | 1087645 | 1095380 | - | mRNA | protein_coding |
| -369699 | enst00000586817 | sg00000099817 | polr2e-205 | 19 | 1088167 | 1095375 | - | lnc_RNA | retained_intron |
| -369699 | enst00000589737 | sg00000099817 | polr2e-206 | 19 | 1088148 | 1095375 | - | mRNA | nonsense_mediated_decay |
| -369699 | enst00000615234 | sg00000099817 | polr2e-213 | 19 | 1086574 | 1095375 | - | mRNA | protein_coding |
| -369700 | enst00000215587 | sg00000099817 | polr2e-201 | 19 | 1088163 | 1095374 | - | mRNA | nonsense_mediated_decay |
| -369708 | enst00000619917 | sg00000099817 | polr2e-214 | 19 | 1088388 | 1095366 | - | mRNA | protein_coding |
| -369713 | enst00000591709 | sg00000099817 | polr2e-208 | 19 | 1091501 | 1095361 | - | lnc_RNA | retained_intron |
| -369720 | enst00000614705 | sg00000099817 | polr2e-212 | 19 | 1089897 | 1095354 | - | lnc_RNA | processed_transcript |
| -369720 | enst00000586746 | sg00000099817 | polr2e-204 | 19 | 1086579 | 1095354 | - | mRNA | protein_coding |
| -369725 | enst00000592597 | sg00000099817 | polr2e-210 | 19 | 1093730 | 1095349 | - | lnc_RNA | retained_intron |
| -369738 | enst00000591767 | sg00000099817 | polr2e-209 | 19 | 1088148 | 1095336 | - | mRNA | nonsense_mediated_decay |
| -369813 | enst00000585838 | sg00000099817 | polr2e-202 | 19 | 1088645 | 1095261 | - | mRNA | protein_coding |
| -372728 | enst00000590060 | sg00000099817 | polr2e-207 | 19 | 1086595 | 1092346 | - | mRNA | nonsense_mediated_decay |
| -375144 | enst00000586215 | sg00000099817 | polr2e-203 | 19 | 1088424 | 1089930 | - | lnc_RNA | retained_intron |
| 377152 | enst00000587524 | sg00000079313 | rexo1-205 | 19 | 1827648 | 1848446 | - | lnc_RNA | processed_transcript |
| 377189 | enst00000170168 | sg00000079313 | rexo1-201 | 19 | 1815248 | 1848483 | - | mRNA | protein_coding |
| 381088 | enst00000592884 | sg00000267125 | ac012615.3-201 | 19 | 1852382 | 1853622 | + | lnc_RNA | lncrna |
| -382135 | enst00000591169 | sg00000180448 | ac004151.1-216 | 19 | 1082939 | 1086628 | + | mRNA | nonsense_mediated_decay |
| -382233 | enst00000592297 | sg00000180448 | ac004151.1-215 | 19 | 1082841 | 1086600 | + | lnc_RNA | retained_intron |
| -382290 | enst00000586378 | sg00000180448 | ac004151.1-214 | 19 | 1082784 | 1085996 | + | lnc_RNA | retained_intron |
| -382553 | enst00000590512 | sg00000180448 | ac004151.1-213 | 19 | 1082521 | 1083329 | + | lnc_RNA | processed_transcript |
| -383659 | enst00000586937 | sg00000180448 | ac004151.1-212 | 19 | 1081415 | 1082956 | + | lnc_RNA | retained_intron |
| -387587 | enst00000590577 | sg00000180448 | ac004151.1-211 | 19 | 1077487 | 1086628 | + | mRNA | protein_coding |
| 388956 | enst00000586694 | sg00000267141 | ac012615.4-201 | 19 | 1860250 | 1862019 | + | lnc_RNA | lncrna |
| -391491 | enst00000586033 | sg00000180448 | ac004151.1-210 | 19 | 1073583 | 1074724 | + | lnc_RNA | retained_intron |
| 391564 | enst00000592313 | sg00000129911 | klf16-203 | 19 | 1854318 | 1862858 | - | mRNA | protein_coding |
| 392203 | enst00000617223 | sg00000129911 | klf16-204 | 19 | 1852400 | 1863497 | - | mRNA | protein_coding |
| 392203 | enst00000541015 | sg00000129911 | klf16-202 | 19 | 1852399 | 1863497 | - | mRNA | nonsense_mediated_decay |
| 392285 | enst00000250916 | sg00000129911 | klf16-201 | 19 | 1852399 | 1863579 | - | mRNA | protein_coding |
| -393561 | enst00000592335 | sg00000180448 | ac004151.1-209 | 19 | 1071513 | 1073549 | + | lnc_RNA | processed_transcript |
| -393853 | enst00000543365 | sg00000180448 | ac004151.1-208 | 19 | 1071221 | 1086628 | + | mRNA | protein_coding |
| -397576 | enst00000586866 | sg00000180448 | ac004151.1-207 | 19 | 1067498 | 1086628 | + | mRNA | protein_coding |
| -397747 | enst00000590214 | sg00000180448 | ac004151.1-206 | 19 | 1067327 | 1086626 | + | mRNA | protein_coding |
| -397755 | enst00000591293 | sg00000180448 | ac004151.1-205 | 19 | 1067319 | 1080961 | + | lnc_RNA | retained_intron |
| -397757 | enst00000587602 | sg00000180448 | ac004151.1-204 | 19 | 1067317 | 1086628 | + | mRNA | nonsense_mediated_decay |
| -397908 | enst00000313093 | sg00000180448 | ac004151.1-203 | 19 | 1067166 | 1086628 | + | mRNA | protein_coding |
| -398565 | enst00000587186 | sg00000180448 | ac004151.1-202 | 19 | 1066509 | 1073223 | + | mRNA | protein_coding |
| -399151 | enst00000539243 | sg00000180448 | ac004151.1-201 | 19 | 1065923 | 1086628 | + | mRNA | protein_coding |
| -400415 | enst00000524383 | sg00000064687 | abca7-204 | 19 | 1064659 | 1065328 | + | lnc_RNA | processed_transcript |
| -401022 | enst00000531478 | sg00000064687 | abca7-214 | 19 | 1064052 | 1065572 | + | lnc_RNA | retained_intron |
| -402895 | enst00000612569 | sg00000064687 | abca7-217 | 19 | 1062179 | 1065458 | + | mRNA | protein_coding |
| 403722 | enst00000592720 | sg00000267232 | ac012615.5-201 | 19 | 1875016 | 1875992 | + | lnc_RNA | lncrna |
| 404875 | enst00000565797 | sg00000261526 | ac012615.1-201 | 19 | 1874871 | 1876169 | - | lnc_RNA | lncrna |
| -407074 | enst00000532194 | sg00000064687 | abca7-215 | 19 | 1058000 | 1059263 | + | lnc_RNA | retained_intron |
| -408140 | enst00000525073 | sg00000064687 | abca7-206 | 19 | 1056934 | 1065569 | + | mRNA | protein_coding |
| -408146 | enst00000529442 | sg00000064687 | abca7-210 | 19 | 1056928 | 1058732 | + | mRNA | nonsense_mediated_decay |
| 408723 | enst00000592757 | sg00000129968 | abhd17a-206 | 19 | 1877204 | 1880017 | - | mRNA | nonsense_mediated_decay |
| -409089 | enst00000673773 | sg00000064687 | abca7-218 | 19 | 1055985 | 1065551 | + | lnc_RNA | retained_intron |
| 410291 | enst00000590661 | sg00000129968 | abhd17a-204 | 19 | 1876979 | 1881585 | - | mRNA | protein_coding |
| -410998 | enst00000530092 | sg00000064687 | abca7-211 | 19 | 1054076 | 1055939 | + | mRNA | nonsense_mediated_decay |
| 412308 | enst00000588598 | sg00000129968 | abhd17a-203 | 19 | 1876977 | 1883602 | - | lnc_RNA | retained_intron |
| 412506 | enst00000591351 | sg00000129968 | abhd17a-205 | 19 | 1876977 | 1883800 | - | lnc_RNA | retained_intron |
| 414139 | enst00000250974 | sg00000129968 | abhd17a-201 | 19 | 1876976 | 1885433 | - | mRNA | protein_coding |
| 414253 | enst00000292577 | sg00000129968 | abhd17a-202 | 19 | 1876810 | 1885547 | - | mRNA | protein_coding |
| -415659 | enst00000435683 | sg00000064687 | abca7-203 | 19 | 1049415 | 1065491 | + | mRNA | nonsense_mediated_decay |
| -419542 | enst00000533574 | sg00000064687 | abca7-216 | 19 | 1045532 | 1047554 | + | lnc_RNA | processed_transcript |
| -423869 | enst00000527496 | sg00000064687 | abca7-209 | 19 | 1041205 | 1042104 | + | lnc_RNA | retained_intron |
| -423872 | enst00000531467 | sg00000064687 | abca7-213 | 19 | 1041202 | 1042176 | + | mRNA | protein_coding |
| -424954 | enst00000524850 | sg00000064687 | abca7-205 | 19 | 1040120 | 1042391 | + | mRNA | protein_coding |
| -424956 | enst00000525238 | sg00000064687 | abca7-207 | 19 | 1040118 | 1042465 | + | lnc_RNA | retained_intron |
| -424958 | enst00000530703 | sg00000064687 | abca7-212 | 19 | 1040116 | 1041682 | + | lnc_RNA | retained_intron |
| -424967 | enst00000263094 | sg00000064687 | abca7-201 | 19 | 1040107 | 1065572 | + | mRNA | protein_coding |
| -424971 | enst00000526885 | sg00000064687 | abca7-208 | 19 | 1040103 | 1042744 | + | lnc_RNA | retained_intron |
| -425077 | enst00000433129 | sg00000064687 | abca7-202 | 19 | 1039997 | 1065567 | + | lnc_RNA | retained_intron |
| -426010 | enst00000623459 | sg00000279753 | ac011558.1-201 | 19 | 1038727 | 1039064 | - | unconfirmed_transcript | tec |
| -428275 | enst00000564572 | sg00000064666 | cnn2-206 | 19 | 1036799 | 1039064 | + | lnc_RNA | retained_intron |
| 434078 | enst00000452128 | sg00000227500 | scamp4-205 | 19 | 1905372 | 1919204 | + | lnc_RNA | retained_intron |
| 434084 | enst00000414057 | sg00000227500 | scamp4-204 | 19 | 1905378 | 1925016 | + | mRNA | protein_coding |
| 434097 | enst00000460767 | sg00000227500 | scamp4-206 | 19 | 1905391 | 1918961 | + | mRNA | nonsense_mediated_decay |
| 434105 | enst00000329478 | sg00000213638 | adat3-201 | 19 | 1905399 | 1913447 | + | mRNA | protein_coding |
| 434105 | enst00000489554 | sg00000227500 | scamp4-208 | 19 | 1905399 | 1920743 | + | lnc_RNA | processed_transcript |
| 434105 | enst00000316097 | sg00000227500 | scamp4-201 | 19 | 1905399 | 1926013 | + | mRNA | protein_coding |
| 434106 | enst00000588555 | sg00000227500 | scamp4-210 | 19 | 1905400 | 1907184 | + | lnc_RNA | retained_intron |
| 434110 | enst00000409472 | sg00000227500 | scamp4-202 | 19 | 1905404 | 1926013 | + | mRNA | protein_coding |
| -434131 | enst00000566695 | sg00000064666 | cnn2-208 | 19 | 1030943 | 1037733 | + | mRNA | protein_coding |
| 436725 | enst00000454697 | sg00000213638 | adat3-202 | 19 | 1908019 | 1912255 | + | mRNA | protein_coding |
| 436970 | enst00000411971 | sg00000227500 | scamp4-203 | 19 | 1908264 | 1918965 | + | mRNA | protein_coding |
| 436987 | enst00000588907 | sg00000227500 | scamp4-211 | 19 | 1908281 | 1918189 | + | mRNA | protein_coding |
| -438383 | enst00000562075 | sg00000064666 | cnn2-204 | 19 | 1026691 | 1036677 | + | mRNA | protein_coding |
| -438383 | enst00000607102 | sg00000064666 | cnn2-212 | 19 | 1026691 | 1036688 | + | mRNA | protein_coding |
| -438412 | enst00000606983 | sg00000064666 | cnn2-211 | 19 | 1026662 | 1036472 | + | mRNA | protein_coding |
| -438443 | enst00000568865 | sg00000064666 | cnn2-209 | 19 | 1026631 | 1038309 | + | mRNA | protein_coding |
| -438445 | enst00000569352 | sg00000064666 | cnn2-210 | 19 | 1026629 | 1037632 | + | mRNA | nonsense_mediated_decay |
| -438445 | enst00000562958 | sg00000064666 | cnn2-205 | 19 | 1026629 | 1039068 | + | mRNA | protein_coding |
| -438456 | enst00000565096 | sg00000064666 | cnn2-207 | 19 | 1026618 | 1039068 | + | mRNA | protein_coding |
| -438464 | enst00000348419 | sg00000064666 | cnn2-202 | 19 | 1026610 | 1039068 | + | mRNA | protein_coding |
| -438466 | enst00000263097 | sg00000064666 | cnn2-201 | 19 | 1026608 | 1039065 | + | mRNA | protein_coding |
| -438488 | enst00000562015 | sg00000064666 | cnn2-203 | 19 | 1026586 | 1032695 | + | mRNA | protein_coding |
| 441796 | enst00000590266 | sg00000227500 | scamp4-212 | 19 | 1913090 | 1918161 | + | mRNA | protein_coding |
| 443227 | enst00000621748 | sg00000227500 | scamp4-213 | 19 | 1914521 | 1924701 | + | mRNA | protein_coding |
| -443552 | enst00000384627 | sg00000207357 | rnu6-2-201 | 19 | 1021522 | 1021628 | + | snRNA | snrna |
| -443895 | enst00000593068 | sg00000182087 | tmem259-211 | 19 | 1009648 | 1021179 | - | mRNA | nonsense_mediated_decay |
| -443951 | enst00000356663 | sg00000182087 | tmem259-202 | 19 | 1009653 | 1021123 | - | mRNA | protein_coding |
| -443959 | enst00000333175 | sg00000182087 | tmem259-201 | 19 | 1009651 | 1021115 | - | mRNA | protein_coding |
| -444223 | enst00000586704 | sg00000182087 | tmem259-205 | 19 | 1009653 | 1020851 | - | lnc_RNA | retained_intron |
| 447350 | enst00000585335 | sg00000227500 | scamp4-209 | 19 | 1918644 | 1922156 | + | lnc_RNA | processed_transcript |
| -447654 | enst00000592590 | sg00000182087 | tmem259-209 | 19 | 1009650 | 1017420 | - | mRNA | protein_coding |
| -450770 | enst00000586250 | sg00000182087 | tmem259-203 | 19 | 1012113 | 1014304 | - | mRNA | protein_coding |
| 450819 | enst00000472442 | sg00000227500 | scamp4-207 | 19 | 1922113 | 1926005 | + | lnc_RNA | retained_intron |
| -450827 | enst00000589055 | sg00000182087 | tmem259-206 | 19 | 1011866 | 1014247 | - | lnc_RNA | retained_intron |
| -451435 | enst00000589831 | sg00000182087 | tmem259-207 | 19 | 1012541 | 1013639 | - | lnc_RNA | retained_intron |
| -451732 | enst00000607316 | sg00000182087 | tmem259-212 | 19 | 1011852 | 1013342 | - | lnc_RNA | retained_intron |
| -452785 | enst00000592618 | sg00000182087 | tmem259-210 | 19 | 1009652 | 1012289 | - | lnc_RNA | retained_intron |
| -453082 | enst00000586285 | sg00000182087 | tmem259-204 | 19 | 1010695 | 1011992 | - | mRNA | protein_coding |
| -453718 | enst00000592052 | sg00000182087 | tmem259-208 | 19 | 1009720 | 1011356 | - | lnc_RNA | retained_intron |
| -454853 | enst00000610701 | sg00000274177 | ac004528.2-201 | 19 | 1010221 | 1010907 | + | lnc_RNA | lncrna |
| -460539 | enst00000588335 | sg00000116032 | grin3b-202 | 19 | 1004535 | 1005279 | + | lnc_RNA | processed_transcript |
| -462317 | enst00000588380 | sg00000266990 | ac004528.1-201 | 19 | 999796 | 1002757 | - | lnc_RNA | lncrna |
| -464655 | enst00000234389 | sg00000116032 | grin3b-201 | 19 | 1000419 | 1009732 | + | mRNA | protein_coding |
| 469878 | enst00000255641 | sg00000133275 | csnk1g2-201 | 19 | 1941172 | 1981338 | + | mRNA | protein_coding |
| -471060 | enst00000591155 | sg00000065268 | wdr18-207 | 19 | 994014 | 994554 | + | lnc_RNA | retained_intron |
| 471165 | enst00000591752 | sg00000133275 | csnk1g2-209 | 19 | 1942459 | 1978345 | + | mRNA | protein_coding |
| -473940 | enst00000590354 | sg00000065268 | wdr18-205 | 19 | 991134 | 994557 | + | mRNA | nonsense_mediated_decay |
| -474427 | enst00000591276 | sg00000065268 | wdr18-208 | 19 | 990647 | 991334 | + | lnc_RNA | retained_intron |
| -480696 | enst00000591997 | sg00000065268 | wdr18-210 | 19 | 984378 | 998438 | + | mRNA | protein_coding |
| -480716 | enst00000591985 | sg00000065268 | wdr18-209 | 19 | 984358 | 994554 | + | mRNA | nonsense_mediated_decay |
| -480716 | enst00000251289 | sg00000065268 | wdr18-201 | 19 | 984358 | 994556 | + | mRNA | protein_coding |
| -480716 | enst00000607440 | sg00000065268 | wdr18-211 | 19 | 984358 | 994557 | + | mRNA | protein_coding |
| -480729 | enst00000590397 | sg00000065268 | wdr18-206 | 19 | 984345 | 991286 | + | mRNA | nonsense_mediated_decay |
| -480733 | enst00000586317 | sg00000065268 | wdr18-203 | 19 | 984341 | 990258 | + | lnc_RNA | retained_intron |
| -480742 | enst00000587001 | sg00000065268 | wdr18-204 | 19 | 984332 | 994557 | + | mRNA | protein_coding |
| -480803 | enst00000585809 | sg00000065268 | wdr18-202 | 19 | 984271 | 994570 | + | mRNA | protein_coding |
| 483255 | enst00000314315 | sg00000180846 | csnk1g2-as1-201 | 19 | 1952531 | 1954549 | - | lnc_RNA | lncrna |
| 483292 | enst00000586395 | sg00000180846 | csnk1g2-as1-202 | 19 | 1952589 | 1954586 | - | lnc_RNA | lncrna |
| 483327 | enst00000614707 | sg00000133275 | csnk1g2-210 | 19 | 1954621 | 1969661 | + | lnc_RNA | processed_transcript |
| 483339 | enst00000589350 | sg00000133275 | csnk1g2-204 | 19 | 1954633 | 1974751 | + | mRNA | protein_coding |
| -498287 | enst00000590749 | sg00000116017 | arid3a-206 | 19 | 966787 | 968795 | + | lnc_RNA | retained_intron |
| 498532 | enst00000589385 | sg00000133275 | csnk1g2-205 | 19 | 1969826 | 1979403 | + | mRNA | protein_coding |
Source file: /hps/research1/birney/users/adrien/analyses/cancer_DNA_promethion/run_1_2_3_4/DNA_pipeline_2/results/methylation/pycometh_meth_comp_CGI_3/out.tsv.gz
MD5 hash: 9aa0e3f69cb4e12345c3758eb68a5efc